Ubuntu
trnascan-se package

trnascan-se 2.0.12+ds-1 source package in Ubuntu

Changelog

trnascan-se (2.0.12+ds-1) unstable; urgency=medium

  * Team upload.
  * New upstream version
  * Standards-Version: 4.6.2 (routine-update)

 -- Andreas Tille <email address hidden>  Thu, 13 Jul 2023 15:39:15 +0200

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any all
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Oracular release multiverse misc
Noble release multiverse misc
Mantic release multiverse misc

Downloads

File Size SHA-256 Checksum
trnascan-se_2.0.12+ds-1.dsc 2.1 KiB 30e38a718b83184f89ae5dc4a4aff8b4378db91ad99b75828119b0a48a050ace
trnascan-se_2.0.12+ds.orig.tar.gz 4.1 MiB 35a51645ec004087f81620be918b4ff55733f333769f100b14c0ebff40b19719
trnascan-se_2.0.12+ds-1.debian.tar.xz 11.1 KiB dd146973a320f63ef326e8fa317e9a139be6c94cb6c01b76843cb321a6494c4e

Available diffs

No changes file available.

Binary packages built by this source

trnascan-se: detection of transfer RNA genes in genomic sequence

 tRNAscan-SE identifies 99-100% of transfer RNA genes in DNA sequence while
 giving less than one false positive per 15 gigabases. Two previously described
 tRNA detection programs are used as fast, first-pass prefilters to identify
 candidate tRNAs, which are then analyzed by a highly selective tRNA covariance
 model. This work represents a practical application of RNA covariance models,
 which are general, probabilistic secondary structure profiles based on
 stochastic context-free grammars. tRNAscan-SE searches at ~ 30 000 bp/s.
 Additional extensions to tRNAscan-SE detect unusual tRNA homologues such as
 selenocysteine tRNAs, tRNA-derived repetitive elements and tRNA pseudogenes.

trnascan-se-common: detection of transfer RNA genes in genomic sequence (common files)

 tRNAscan-SE identifies 99-100% of transfer RNA genes in DNA sequence while
 giving less than one false positive per 15 gigabases. Two previously described
 tRNA detection programs are used as fast, first-pass prefilters to identify
 candidate tRNAs, which are then analyzed by a highly selective tRNA covariance
 model. This work represents a practical application of RNA covariance models,
 which are general, probabilistic secondary structure profiles based on
 stochastic context-free grammars. tRNAscan-SE searches at ~ 30 000 bp/s.
 Additional extensions to tRNAscan-SE detect unusual tRNA homologues such as
 selenocysteine tRNAs, tRNA-derived repetitive elements and tRNA pseudogenes.
 .
 This package contains the architecture-independent common files.

trnascan-se-dbgsym: debug symbols for trnascan-se