Ubuntu
trimmomatic package

trimmomatic 0.39+dfsg-2 source package in Ubuntu

Changelog

trimmomatic (0.39+dfsg-2) unstable; urgency=medium

  * Standards-Version: 4.5.1 (routine-update)
  * debhelper-compat 13 (routine-update)
  * autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g (routine-update)
  * Add salsa-ci file (routine-update)
  * Rules-Requires-Root: no (routine-update)
  * Trim trailing whitespace.
  * watch file standard 4 (routine-update)

 -- Andreas Tille <email address hidden>  Thu, 17 Dec 2020 14:57:35 +0100

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
all
Section:
science
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Oracular release universe science
Noble release universe science
Mantic release universe science
Lunar release universe science
Jammy release universe science

Builds

Hirsute: [FULLYBUILT] amd64

Downloads

File Size SHA-256 Checksum
trimmomatic_0.39+dfsg-2.dsc 2.1 KiB aabef67cc385b08c9f5ac78e4371608552005bbded198566b87fee709790762e
trimmomatic_0.39+dfsg.orig.tar.xz 32.2 KiB a9ac64994dace27d58942689b493677b8fd2cf3337d7d5c0a7071a6b9f2b06e3
trimmomatic_0.39+dfsg-2.debian.tar.xz 530.2 KiB 5ca0545a1e00d44e703a234a11272636369dee15800b1e988da3837c418ed3be

Available diffs

No changes file available.

Binary packages built by this source

trimmomatic: flexible read trimming tool for Illumina NGS data

 Trimmomatic performs a variety of useful trimming tasks for illumina
 paired-end and single ended data.The selection of trimming steps and
 their associated parameters are supplied on the command line.
 .
 The current trimming steps are:
  * ILLUMINACLIP: Cut adapter and other illumina-specific sequences from
    the read.
  * SLIDINGWINDOW: Perform a sliding window trimming, cutting once thes
    average quality within the window falls below a threshold.
  * LEADING: Cut bases off the start of a read, if below a threshold quality
  * TRAILING: Cut bases off the end of a read, if below a threshold quality
  * CROP: Cut the read to a specified length
  * HEADCROP: Cut the specified number of bases from the start of the read
  * MINLENGTH: Drop the read if it is below a specified length
  * TOPHRED33: Convert quality scores to Phred-33
  * TOPHRED64: Convert quality scores to Phred-64
 It works with FASTQ (using phred + 33 or phred + 64 quality scores,
 depending on the Illumina pipeline used), either uncompressed or
 gzipp'ed FASTQ. Use of gzip format is determined based on the .gz
 extension.