transdecoder 5.0.1-5 source package in Ubuntu
Changelog
transdecoder (5.0.1-5) unstable; urgency=medium
* Team upload.
* d/control: Suggests: transdecoder-doc.
Thanks to Andreas Beckmann <email address hidden> (Closes: #988852)
-- Étienne Mollier <email address hidden> Mon, 13 Dec 2021 21:25:21 +0100
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- all
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section | |
|---|---|---|---|---|
| Mantic | release | universe | misc | |
| Lunar | release | universe | misc | |
| Jammy | release | universe | misc |
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| transdecoder_5.0.1-5.dsc | 2.1 KiB | 88d7ff2be0d8ecd6dc0c610723d2f21a6e99bebb2e1c503b249db5161fe9eff7 |
| transdecoder_5.0.1.orig.tar.gz | 12.5 MiB | 7b8295557cd6a59eb34e84ea97409293e4c894157d29e9a50e11110ec6752a39 |
| transdecoder_5.0.1-5.debian.tar.xz | 5.5 KiB | 3e4f0691cf04b45fffbbab0215126c372ed7cd60906fdf8ae4663211ff142ba4 |
Available diffs
- diff from 5.0.1-4 to 5.0.1-5 (567 bytes)
No changes file available.
Binary packages built by this source
- transdecoder: find coding regions within RNA transcript sequences
TransDecoder identifies candidate coding regions within transcript sequences,
such as those generated by de novo RNA-Seq transcript assembly using Trinity,
or constructed based on RNA-Seq alignments to the genome using Tophat and
Cufflinks.
.
TransDecoder identifies likely coding sequences based on the following
criteria:
* a minimum length open reading frame (ORF) is found in a transcript sequence
* a log-likelihood score similar to what is computed by the GeneID software
is > 0.
* the above coding score is greatest when the ORF is scored in the 1st
reading frame as compared to scores in the other 5 reading frames.
* if a candidate ORF is found fully encapsulated by the coordinates of
another candidate ORF, the longer one is reported. However, a single
transcript can report multiple ORFs (allowing for operons, chimeras, etc).
* optional the putative peptide has a match to a Pfam domain above the noise
cutoff score.
- transdecoder-doc: No summary available for transdecoder-doc in ubuntu kinetic.
No description available for transdecoder-doc in ubuntu kinetic.
