transdecoder 5.0.1-2 source package in Ubuntu
Changelog
transdecoder (5.0.1-2) unstable; urgency=medium * Point Vcs fields to salsa.debian.org * Standards-Version: 4.2.1 * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target * Remove trailing whitespace in debian/changelog * Remove trailing whitespace in debian/copyright * Fix Perl path -- Andreas Tille <email address hidden> Tue, 30 Oct 2018 14:25:40 +0100
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- all
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section |
|---|
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| transdecoder_5.0.1-2.dsc | 2.1 KiB | 2de53638f2ee9934b09b12d2171d034adcfec0e7155a5d4ecae97480f68b4da4 |
| transdecoder_5.0.1.orig.tar.gz | 12.5 MiB | 7b8295557cd6a59eb34e84ea97409293e4c894157d29e9a50e11110ec6752a39 |
| transdecoder_5.0.1-2.debian.tar.xz | 4.8 KiB | 537591e8edbc14237e1a845bea9e8ad3727b0ef113c07d1fff4eff85d223338a |
Available diffs
- diff from 5.0.1-1 to 5.0.1-2 (1.9 KiB)
No changes file available.
Binary packages built by this source
- transdecoder: No summary available for transdecoder in ubuntu eoan.
No description available for transdecoder in ubuntu eoan.
- transdecoder-doc: find coding regions within transcripts
TransDecoder identifies candidate coding regions within transcript sequences,
such as those generated by de novo RNA-Seq transcript assembly using Trinity,
or constructed based on RNA-Seq alignments to the genome using Tophat and
Cufflinks.
.
TransDecoder identifies likely coding sequences based on the following
criteria:
* a minimum length open reading frame (ORF) is found in a transcript sequence
* a log-likelihood score similar to what is computed by the GeneID software
is > 0.
* the above coding score is greatest when the ORF is scored in the 1st
reading frame as compared to scores in the other 5 reading frames.
* if a candidate ORF is found fully encapsulated by the coordinates of
another candidate ORF, the longer one is reported. However, a single
transcript can report multiple ORFs (allowing for operons, chimeras, etc).
* optional the putative peptide has a match to a Pfam domain above the noise
cutoff score.
.
This package contains the documentation and sample data.
