https://launchpad.net/ubuntu/+source/toppic/1.5.3+dfsg1-1build3/+build/28014020 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux lcy02-amd64-070 5.4.0-173-generic #191-Ubuntu SMP Fri Feb 2 13:55:07 UTC 2024 x86_64 Buildd toolchain package versions: launchpad-buildd_236~650~ubuntu20.04.1 python3-lpbuildd_236~650~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.11 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1.1. Syncing the system clock with the buildd NTP service... 1 Apr 11:47:15 ntpdate[1855]: adjust time server 10.131.248.1 offset 0.000166 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=noble --arch=amd64 PACKAGEBUILD-28014020 --image-type chroot /home/buildd/filecache-default/1fe94ca8758119221c8de2550665a1bb335bd6a9 Creating target for build PACKAGEBUILD-28014020 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=noble --arch=amd64 PACKAGEBUILD-28014020 Starting target for build PACKAGEBUILD-28014020 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=noble --arch=amd64 PACKAGEBUILD-28014020 'deb http://ftpmaster.internal/ubuntu noble main universe' 'deb http://ftpmaster.internal/ubuntu noble-security main universe' 'deb http://ftpmaster.internal/ubuntu noble-updates main universe' 'deb http://ftpmaster.internal/ubuntu noble-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-28014020 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=noble --arch=amd64 PACKAGEBUILD-28014020 Updating target for build PACKAGEBUILD-28014020 Get:1 http://ftpmaster.internal/ubuntu noble InRelease [255 kB] Get:2 http://ftpmaster.internal/ubuntu noble-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu noble-updates InRelease [89.7 kB] Get:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 Packages [867 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main Translation-en [512 kB] Get:7 http://ftpmaster.internal/ubuntu noble/universe amd64 Packages [11.4 MB] Get:8 http://ftpmaster.internal/ubuntu noble/universe Translation-en [6118 kB] Get:9 http://ftpmaster.internal/ubuntu noble-updates/main amd64 Packages [705 kB] Get:10 http://ftpmaster.internal/ubuntu noble-updates/main Translation-en [242 kB] Get:11 http://ftpmaster.internal/ubuntu noble-updates/universe amd64 Packages [4722 kB] Get:12 http://ftpmaster.internal/ubuntu noble-updates/universe Translation-en [1693 kB] Get:13 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [671 kB] Get:14 http://ftpmaster.internal/ubuntu noble-proposed/main Translation-en [239 kB] Get:15 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4231 kB] Get:16 http://ftpmaster.internal/ubuntu noble-proposed/universe Translation-en [1505 kB] Fetched 33.4 MB in 4s (8333 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libnsl-dev libperl5.36 libtirpc-dev libunistring2 perl-modules-5.36 Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: libapt-pkg6.0* libdb5.3* libext2fs2* libgnutls30* libhogweed6* libnettle8* libpng16-16* libssl3* libtirpc3* usrmerge* The following NEW packages will be installed: cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc-13-x86-64-linux-gnu gcc-14-base gcc-x86-64-linux-gnu libapt-pkg6.0t64 libdb5.3t64 libext2fs2t64 libgnutls30t64 libhogweed6t64 libnettle8t64 libperl5.38t64 libpng16-16t64 libssl3t64 libtirpc3t64 libunistring5 perl-modules-5.38 The following packages will be upgraded: apt apt-utils base-files base-passwd bash bash-completion binutils binutils-common binutils-x86-64-linux-gnu bsdextrautils bsdutils bzip2 ca-certificates coreutils cpp cpp-13 dash debconf debconf-i18n debianutils diffutils dpkg dpkg-dev e2fsprogs fakeroot g++ g++-13 gcc gcc-13 gcc-13-base gpg gpg-agent gpgconf gpgv grep gzip hostname init init-system-helpers krb5-locales libacl1 libapparmor1 libargon2-1 libasan8 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libfakeroot libfdisk1 libffi8 libgcc-13-dev libgcc-s1 libgcrypt20 libgdbm-compat4 libgdbm6 libgomp1 libgpg-error-l10n libgpg-error0 libgpm2 libgprofng0 libgssapi-krb5-2 libhwasan0 libidn2-0 libip4tc2 libitm1 libjansson4 libk5crypto3 libkeyutils1 libkmod2 libkrb5-3 libkrb5support0 liblocale-gettext-perl liblsan0 liblzma5 libmd0 libmount1 libncursesw6 libnsl-dev libnsl2 libnss-nisplus libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libproc2-0 libquadmath0 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage2 libsepol2 libsframe1 libsmartcols1 libsqlite3-0 libss2 libstdc++-13-dev libstdc++6 libsystemd-shared libsystemd0 libtext-charwidth-perl libtext-iconv-perl libtinfo6 libtirpc-common libtirpc-dev libtsan2 libubsan1 libudev1 libuuid1 libxxhash0 libzstd1 linux-libc-dev login logsave lto-disabled-list mawk mount ncurses-base ncurses-bin openssl optipng passwd perl perl-base pinentry-curses procps psmisc readline-common sed sensible-utils systemd systemd-dev systemd-sysv sysvinit-utils tar tzdata ubuntu-keyring util-linux uuid-runtime xz-utils zlib1g 163 upgraded, 19 newly installed, 10 to remove and 0 not upgraded. Need to get 119 MB of archives. After this operation, 78.3 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libnsl-dev amd64 1.3.0-3build3 [70.5 kB] Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB] Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libc6-dev amd64 2.39-0ubuntu8 [2124 kB] Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libc-dev-bin amd64 2.39-0ubuntu8 [20.4 kB] Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libtirpc-common all 1.3.4+ds-1.1build1 [8094 B] Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libtirpc-dev amd64 1.3.4+ds-1.1build1 [193 kB] Get:7 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 libnss-nisplus amd64 1.3-5build1 [22.4 kB] Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.1build1 [82.6 kB] Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libgssapi-krb5-2 amd64 1.20.1-6ubuntu2 [142 kB] Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libkrb5-3 amd64 1.20.1-6ubuntu2 [347 kB] Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libk5crypto3 amd64 1.20.1-6ubuntu2 [81.7 kB] Get:12 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libkrb5support0 amd64 1.20.1-6ubuntu2 [33.5 kB] Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 libacl1 amd64 2.3.2-1 [16.7 kB] Get:14 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libapparmor1 amd64 4.0.0-beta3-0ubuntu3 [49.5 kB] Get:15 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libaudit-common all 1:3.1.2-2.1build1 [5736 B] Get:16 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libcap-ng0 amd64 0.8.4-2build2 [15.2 kB] Get:17 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libaudit1 amd64 1:3.1.2-2.1build1 [46.9 kB] Get:18 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libblkid1 amd64 2.39.3-9ubuntu4 [122 kB] Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 libcap2 amd64 1:2.66-5ubuntu1 [29.9 kB] Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt1 amd64 1:4.4.36-4 [95.3 kB] Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libgpg-error-l10n all 1.47-3build1 [8024 B] Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libgpg-error0 amd64 1.47-3build1 [70.0 kB] Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libgcrypt20 amd64 1.10.3-2 [532 kB] Get:24 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 liblzma5 amd64 5.6.1+really5.4.5-1build1 [127 kB] Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 libzstd1 amd64 1.5.5+dfsg2-2 [297 kB] Get:26 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libkmod2 amd64 31+20240202-2ubuntu5 [51.5 kB] Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-8-0 amd64 10.42-4ubuntu1 [228 kB] Get:28 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libselinux1 amd64 3.5-2ubuntu2 [79.6 kB] Get:29 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libmount1 amd64 2.39.3-9ubuntu4 [134 kB] Get:30 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 perl-modules-5.38 all 5.38.2-3.2build1 [3110 kB] Get:31 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libperl5.38t64 amd64 5.38.2-3.2build1 [4870 kB] Get:32 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 perl amd64 5.38.2-3.2build1 [231 kB] Get:33 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 perl-base amd64 5.38.2-3.2build1 [1823 kB] Get:34 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 liblocale-gettext-perl amd64 1.07-6ubuntu5 [15.8 kB] Get:35 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libtext-iconv-perl amd64 1.7-8build3 [13.5 kB] Get:36 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libtext-charwidth-perl amd64 0.04-11build3 [9358 B] Get:37 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 bzip2 amd64 1.0.8-5.1 [34.5 kB] Get:38 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libbz2-1.0 amd64 1.0.8-5.1 [34.3 kB] Get:39 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libc6 amd64 2.39-0ubuntu8 [3265 kB] Get:40 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libc-bin amd64 2.39-0ubuntu8 [682 kB] Get:41 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libsystemd-shared amd64 255.4-1ubuntu6 [2070 kB] Get:42 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 systemd-dev all 255.4-1ubuntu6 [104 kB] Get:43 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 systemd-sysv amd64 255.4-1ubuntu6 [11.9 kB] Get:44 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 systemd amd64 255.4-1ubuntu6 [3471 kB] Get:45 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libsystemd0 amd64 255.4-1ubuntu6 [432 kB] Get:46 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libpam-modules-bin amd64 1.5.3-5ubuntu4 [51.9 kB] Get:47 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libpam-modules amd64 1.5.3-5ubuntu4 [279 kB] Get:48 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libnettle8t64 amd64 3.9.1-2.2build1 [182 kB] Get:49 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libhogweed6t64 amd64 3.9.1-2.2build1 [199 kB] Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 libp11-kit0 amd64 0.25.3-4ubuntu1 [299 kB] Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 libunistring5 amd64 1.1-2 [537 kB] Get:52 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libgnutls30t64 amd64 3.8.3-1.1ubuntu3 [998 kB] Get:53 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libapt-pkg6.0t64 amd64 2.7.14build2 [985 kB] Get:54 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 gcc-14-base amd64 14-20240330-1ubuntu2 [47.5 kB] Get:55 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libgcc-s1 amd64 14-20240330-1ubuntu2 [77.7 kB] Get:56 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libstdc++6 amd64 14-20240330-1ubuntu2 [795 kB] Get:57 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libudev1 amd64 255.4-1ubuntu6 [174 kB] Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libxxhash0 amd64 0.8.2-2 [25.5 kB] Get:59 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 zlib1g amd64 1:1.3.dfsg-3.1ubuntu2 [62.8 kB] Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 libffi8 amd64 3.4.6-1 [24.7 kB] Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 libidn2-0 amd64 2.3.7-2 [66.0 kB] Get:62 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libdebconfclient0 amd64 0.271ubuntu3 [11.4 kB] Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 base-passwd amd64 3.6.3 [51.2 kB] Get:64 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 gpgv amd64 2.4.4-2ubuntu16 [157 kB] Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 ubuntu-keyring all 2023.11.28.1 [11.1 kB] Get:66 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libseccomp2 amd64 2.5.5-1ubuntu3 [50.3 kB] Get:67 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libdb5.3t64 amd64 5.3.28+dfsg2-6build1 [734 kB] Get:68 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 apt-utils amd64 2.7.14build2 [217 kB] Get:69 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 apt amd64 2.7.14build2 [1375 kB] Get:70 http://ftpmaster.internal/ubuntu noble-updates/main amd64 libgdbm6 amd64 1.23-5 [33.3 kB] Get:71 http://ftpmaster.internal/ubuntu noble-updates/main amd64 libgdbm-compat4 amd64 1.23-5 [6498 B] Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 debconf-i18n all 1.5.86 [205 kB] Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 debconf all 1.5.86 [124 kB] Get:74 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libpam0g amd64 1.5.3-5ubuntu4 [67.6 kB] Get:75 http://ftpmaster.internal/ubuntu noble/main amd64 libargon2-1 amd64 0~20190702+dfsg-4 [21.4 kB] Get:76 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libdevmapper1.02.1 amd64 2:1.02.185-3ubuntu3 [139 kB] Get:77 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libuuid1 amd64 2.39.3-9ubuntu4 [35.1 kB] Get:78 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libcryptsetup12 amd64 2:2.7.0-1ubuntu3 [266 kB] Get:79 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libfdisk1 amd64 2.39.3-9ubuntu4 [146 kB] Get:80 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 mount amd64 2.39.3-9ubuntu4 [118 kB] Get:81 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 openssl amd64 3.0.13-0ubuntu3 [1002 kB] Get:82 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libssl3t64 amd64 3.0.13-0ubuntu3 [1936 kB] Get:83 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libcom-err2 amd64 1.47.0-2.4~exp1ubuntu3 [22.7 kB] Get:84 http://ftpmaster.internal/ubuntu noble/main amd64 libkeyutils1 amd64 1.6.3-3 [9386 B] Get:85 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libnsl2 amd64 1.3.0-3build3 [41.4 kB] Get:86 http://ftpmaster.internal/ubuntu noble-updates/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB] Get:87 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 base-files amd64 13ubuntu9 [73.7 kB] Get:88 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 debianutils amd64 5.17build1 [89.9 kB] Get:89 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 bash amd64 5.2.21-2ubuntu4 [794 kB] Get:90 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 bsdutils amd64 1:2.39.3-9ubuntu4 [95.2 kB] Get:91 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 coreutils amd64 9.4-3ubuntu5 [1412 kB] Get:92 http://ftpmaster.internal/ubuntu noble/main amd64 tar amd64 1.35+dfsg-3 [253 kB] Get:93 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 dpkg amd64 1.22.6ubuntu6 [1283 kB] Get:94 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 dash amd64 0.5.12-6ubuntu5 [89.8 kB] Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 diffutils amd64 1:3.10-1 [176 kB] Get:96 http://ftpmaster.internal/ubuntu noble/main amd64 grep amd64 3.11-4 [176 kB] Get:97 http://ftpmaster.internal/ubuntu noble/main amd64 gzip amd64 1.12-1ubuntu2 [98.8 kB] Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 hostname amd64 3.23+nmu2ubuntu1 [11.0 kB] Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 login amd64 1:4.13+dfsg1-4ubuntu1 [201 kB] Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 ncurses-bin amd64 6.4+20240113-1ubuntu1 [188 kB] Get:101 http://ftpmaster.internal/ubuntu noble/main amd64 sed amd64 4.9-2 [204 kB] Get:102 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 util-linux amd64 2.39.3-9ubuntu4 [1127 kB] Get:103 http://ftpmaster.internal/ubuntu noble/main amd64 init-system-helpers all 1.66ubuntu1 [39.4 kB] Get:104 http://ftpmaster.internal/ubuntu noble/main amd64 ncurses-base all 6.4+20240113-1ubuntu1 [25.4 kB] Get:105 http://ftpmaster.internal/ubuntu noble/main amd64 sysvinit-utils amd64 3.08-6ubuntu2 [34.1 kB] Get:106 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 logsave amd64 1.47.0-2.4~exp1ubuntu3 [22.5 kB] Get:107 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libext2fs2t64 amd64 1.47.0-2.4~exp1ubuntu3 [222 kB] Get:108 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 e2fsprogs amd64 1.47.0-2.4~exp1ubuntu3 [601 kB] Get:109 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 optipng amd64 0.7.8+ds-1build2 [110 kB] Get:110 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libpng16-16t64 amd64 1.6.43-5build1 [187 kB] Get:111 http://ftpmaster.internal/ubuntu noble/main amd64 init amd64 1.66ubuntu1 [6186 B] Get:112 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libsmartcols1 amd64 2.39.3-9ubuntu4 [64.7 kB] Get:113 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 uuid-runtime amd64 2.39.3-9ubuntu4 [33.1 kB] Get:114 http://ftpmaster.internal/ubuntu noble/main amd64 libattr1 amd64 1:2.5.2-1 [11.4 kB] Get:115 http://ftpmaster.internal/ubuntu noble/main amd64 libmd0 amd64 1.1.0-2 [27.1 kB] Get:116 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libpam-runtime all 1.5.3-5ubuntu4 [40.8 kB] Get:117 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libsemanage-common all 3.5-1build5 [10.1 kB] Get:118 http://ftpmaster.internal/ubuntu noble/main amd64 libsepol2 amd64 3.5-2 [300 kB] Get:119 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libsemanage2 amd64 3.5-1build5 [93.2 kB] Get:120 http://ftpmaster.internal/ubuntu noble/main amd64 libncursesw6 amd64 6.4+20240113-1ubuntu1 [148 kB] Get:121 http://ftpmaster.internal/ubuntu noble/main amd64 libtinfo6 amd64 6.4+20240113-1ubuntu1 [108 kB] Get:122 http://ftpmaster.internal/ubuntu noble/main amd64 passwd amd64 1:4.13+dfsg1-4ubuntu1 [844 kB] Get:123 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libproc2-0 amd64 2:4.0.4-4ubuntu3 [59.1 kB] Get:124 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libss2 amd64 1.47.0-2.4~exp1ubuntu3 [17.0 kB] Get:125 http://ftpmaster.internal/ubuntu noble/main amd64 mawk amd64 1.3.4.20240123-1 [127 kB] Get:126 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 procps amd64 2:4.0.4-4ubuntu3 [708 kB] Get:127 http://ftpmaster.internal/ubuntu noble/main amd64 sensible-utils all 0.0.22 [22.5 kB] Get:128 http://ftpmaster.internal/ubuntu noble/main amd64 ca-certificates all 20240203 [159 kB] Get:129 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 krb5-locales all 1.20.1-6ubuntu2 [13.8 kB] Get:130 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libsqlite3-0 amd64 3.45.1-1ubuntu2 [701 kB] Get:131 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 readline-common all 8.2-4build1 [56.5 kB] Get:132 http://ftpmaster.internal/ubuntu noble/main amd64 tzdata all 2024a-1ubuntu1 [273 kB] Get:133 http://ftpmaster.internal/ubuntu noble/main amd64 bash-completion all 1:2.11-8 [180 kB] Get:134 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 bsdextrautils amd64 2.39.3-9ubuntu4 [73.9 kB] Get:135 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libgpm2 amd64 1.20.7-11 [14.1 kB] Get:136 http://ftpmaster.internal/ubuntu noble/main amd64 libip4tc2 amd64 1.8.10-3ubuntu1 [23.3 kB] Get:137 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libjansson4 amd64 2.14-2build2 [32.8 kB] Get:138 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 psmisc amd64 23.7-1build1 [179 kB] Get:139 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 xz-utils amd64 5.6.1+really5.4.5-1build1 [267 kB] Get:140 http://ftpmaster.internal/ubuntu noble/main amd64 libgprofng0 amd64 2.42-4ubuntu2 [851 kB] Get:141 http://ftpmaster.internal/ubuntu noble/main amd64 libctf0 amd64 2.42-4ubuntu2 [94.5 kB] Get:142 http://ftpmaster.internal/ubuntu noble/main amd64 libctf-nobfd0 amd64 2.42-4ubuntu2 [97.1 kB] Get:143 http://ftpmaster.internal/ubuntu noble/main amd64 binutils-x86-64-linux-gnu amd64 2.42-4ubuntu2 [2469 kB] Get:144 http://ftpmaster.internal/ubuntu noble/main amd64 libbinutils amd64 2.42-4ubuntu2 [572 kB] Get:145 http://ftpmaster.internal/ubuntu noble/main amd64 binutils amd64 2.42-4ubuntu2 [18.0 kB] Get:146 http://ftpmaster.internal/ubuntu noble/main amd64 binutils-common amd64 2.42-4ubuntu2 [239 kB] Get:147 http://ftpmaster.internal/ubuntu noble/main amd64 libsframe1 amd64 2.42-4ubuntu2 [14.8 kB] Get:148 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libubsan1 amd64 14-20240330-1ubuntu2 [1172 kB] Get:149 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 g++-13 amd64 13.2.0-23ubuntu3 [14.5 kB] Get:150 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libstdc++-13-dev amd64 13.2.0-23ubuntu3 [2398 kB] Get:151 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libgomp1 amd64 14-20240330-1ubuntu2 [147 kB] Get:152 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libitm1 amd64 14-20240330-1ubuntu2 [29.1 kB] Get:153 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libatomic1 amd64 14-20240330-1ubuntu2 [10.4 kB] Get:154 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libasan8 amd64 14-20240330-1ubuntu2 [3020 kB] Get:155 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 liblsan0 amd64 14-20240330-1ubuntu2 [1310 kB] Get:156 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libhwasan0 amd64 14-20240330-1ubuntu2 [1629 kB] Get:157 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libquadmath0 amd64 14-20240330-1ubuntu2 [155 kB] Get:158 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 gcc-13 amd64 13.2.0-23ubuntu3 [479 kB] Get:159 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libgcc-13-dev amd64 13.2.0-23ubuntu3 [2687 kB] Get:160 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libtsan2 amd64 14-20240330-1ubuntu2 [2731 kB] Get:161 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libcc1-0 amd64 14-20240330-1ubuntu2 [47.7 kB] Get:162 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 cpp-13 amd64 13.2.0-23ubuntu3 [1034 B] Get:163 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 gcc-13-base amd64 13.2.0-23ubuntu3 [48.6 kB] Get:164 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-23ubuntu3 [21.9 MB] Get:165 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-23ubuntu3 [12.5 MB] Get:166 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-23ubuntu3 [11.2 MB] Get:167 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] Get:168 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] Get:169 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] Get:170 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] Get:171 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] Get:172 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] Get:173 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 dpkg-dev all 1.22.6ubuntu6 [1074 kB] Get:174 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libdpkg-perl all 1.22.6ubuntu6 [268 kB] Get:175 http://ftpmaster.internal/ubuntu noble/main amd64 lto-disabled-list all 47 [12.4 kB] Get:176 http://ftpmaster.internal/ubuntu noble/main amd64 libfakeroot amd64 1.33-1 [32.4 kB] Get:177 http://ftpmaster.internal/ubuntu noble/main amd64 fakeroot amd64 1.33-1 [67.2 kB] Get:178 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 pinentry-curses amd64 1.2.1-3ubuntu5 [35.2 kB] Get:179 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 gpg amd64 2.4.4-2ubuntu16 [565 kB] Get:180 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 gpgconf amd64 2.4.4-2ubuntu16 [103 kB] Get:181 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 gpg-agent amd64 2.4.4-2ubuntu16 [227 kB] Get:182 http://ftpmaster.internal/ubuntu noble-updates/universe amd64 libreadline8 amd64 8.2-3 [152 kB] Preconfiguring packages ... 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(both '/usr/bin/bzcat' and '/usr/bin/bzip2') dpkg: warning: old file '/bin/bzcat' is the same as several new files! (both '/usr/bin/bunzip2' and '/usr/bin/bzcat') dpkg: warning: old file '/bin/bzcat' is the same as several new files! (both '/usr/bin/bzcat' and '/usr/bin/bzip2') dpkg: warning: old file '/bin/bunzip2' is the same as several new files! (both '/usr/bin/bunzip2' and '/usr/bin/bzcat') dpkg: warning: old file '/bin/bunzip2' is the same as several new files! (both '/usr/bin/bzcat' and '/usr/bin/bzip2') Preparing to unpack .../libbz2-1.0_1.0.8-5.1_amd64.deb ... Unpacking libbz2-1.0:amd64 (1.0.8-5.1) over (1.0.8-5build1) ... Setting up libbz2-1.0:amd64 (1.0.8-5.1) ... (Reading database ... 15595 files and directories currently installed.) Preparing to unpack .../libc6_2.39-0ubuntu8_amd64.deb ... Unpacking libc6:amd64 (2.39-0ubuntu8) over (2.38-1ubuntu6) ... Setting up libc6:amd64 (2.39-0ubuntu8) ... (Reading database ... 15599 files and directories currently installed.) 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Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-28014020 amd64 noble-proposed -c chroot:build-PACKAGEBUILD-28014020 --arch=amd64 --dist=noble-proposed --nolog -A toppic_1.5.3+dfsg1-1build3.dsc Initiating build PACKAGEBUILD-28014020 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-173-generic #191-Ubuntu SMP Fri Feb 2 13:55:07 UTC 2024 x86_64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on lcy02-amd64-070.buildd +==============================================================================+ | toppic 1.5.3+dfsg1-1build3 (amd64) Mon, 01 Apr 2024 11:47:47 +0000 | +==============================================================================+ Package: toppic Version: 1.5.3+dfsg1-1build3 Source Version: 1.5.3+dfsg1-1build3 Distribution: noble-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: binary I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-28014020/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/toppic-rlLsv5/resolver-4wt5MV' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- toppic_1.5.3+dfsg1-1build3.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/toppic-rlLsv5/toppic-1.5.3+dfsg1' with '<>' I: NOTICE: Log filtering will replace 'build/toppic-rlLsv5' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), cmake, pkg-config, libhts-dev, libboost-dev, libboost-filesystem-dev, libboost-program-options-dev, libboost-thread-dev, libboost-system-dev, libboost-iostreams-dev, libboost-chrono-dev, libeigen3-dev, libxerces-c-dev, qtbase5-dev, libpwizlite-dev, nlohmann-json3-dev, zlib1g-dev, python3-docutils, libjs-filesaver, fonts-font-awesome, fonts-freefont-ttf, libjs-bootstrap4, libjs-popper.js, libjs-jquery-ui, node-jquery, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), cmake, pkg-config, libhts-dev, libboost-dev, libboost-filesystem-dev, libboost-program-options-dev, libboost-thread-dev, libboost-system-dev, libboost-iostreams-dev, libboost-chrono-dev, libeigen3-dev, libxerces-c-dev, qtbase5-dev, libpwizlite-dev, nlohmann-json3-dev, zlib1g-dev, python3-docutils, libjs-filesaver, fonts-font-awesome, fonts-freefont-ttf, libjs-bootstrap4, libjs-popper.js, libjs-jquery-ui, node-jquery, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [549 B] Get:5 copy:/<>/apt_archive ./ Packages [632 B] Fetched 2144 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: apt-utils bash-completion ca-certificates debconf-i18n krb5-locales libgpg-error-l10n libgpm2 libip4tc2 liblocale-gettext-perl libnsl-dev libnsl2 libnss-nis libnss-nisplus libperl5.36 libtext-charwidth-perl libtext-iconv-perl libtext-wrapi18n-perl libtirpc-common libtirpc-dev libtirpc3t64 libunistring2 openssl perl-modules-5.36 psmisc uuid-runtime Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev cmake cmake-data debhelper debugedit dh-autoreconf dh-strip-nondeterminism docutils-common dwz file fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome fonts-freefont-ttf gettext gettext-base groff-base icu-devtools intltool-debian javascript-common libarchive-zip-perl libarchive13t64 libavahi-client3 libavahi-common-data libavahi-common3 libboost-atomic1.83-dev libboost-atomic1.83.0 libboost-chrono-dev libboost-chrono1.83-dev libboost-chrono1.83.0t64 libboost-date-time1.83-dev libboost-date-time1.83.0 libboost-dev libboost-filesystem-dev libboost-filesystem1.83-dev libboost-filesystem1.83.0 libboost-iostreams-dev libboost-iostreams1.83-dev libboost-iostreams1.83.0 libboost-program-options-dev libboost-program-options1.83-dev libboost-program-options1.83.0 libboost-regex1.83-dev libboost-regex1.83.0 libboost-serialization1.83-dev libboost-serialization1.83.0 libboost-system-dev libboost-system1.83-dev libboost-system1.83.0 libboost-thread-dev libboost-thread1.83-dev libboost-thread1.83.0 libboost1.83-dev libbrotli1 libbsd0 libcups2t64 libcurl3t64-gnutls libcurl4-gnutls-dev libcurl4t64 libdbus-1-3 libdebhelper-perl libdeflate-dev libdeflate0 libdouble-conversion3 libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libdw1t64 libedit2 libegl-dev libegl-mesa0 libegl1 libeigen3-dev libelf1t64 libevdev2 libexpat1 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgbm1 libgl-dev libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0t64 libglu1-mesa libglu1-mesa-dev libglvnd0 libglx-dev libglx-mesa0 libglx0 libgraphite2-3 libgudev-1.0-0 libharfbuzz0b libhts-dev libhts3t64 libhtscodecs2 libice6 libicu-dev libicu74 libinput-bin libinput10 libjpeg-turbo8 libjpeg8 libjs-bootstrap4 libjs-filesaver libjs-jquery libjs-jquery-ui libjs-popper.js libjsoncpp25 libldap2 libllvm17 liblzma-dev libmagic-mgc libmagic1t64 libmd4c0 libmtdev1t64 libnghttp2-14 libopengl-dev libopengl0 libpciaccess0 libpcre2-16-0 libpipeline1 libpkgconf3 libpsl5 libpthread-stubs0-dev libpwizlite-dev libpwizlite3t64 libpython3-stdlib libpython3.12-minimal libpython3.12-stdlib libqt5concurrent5t64 libqt5core5t64 libqt5dbus5t64 libqt5gui5t64 libqt5network5t64 libqt5printsupport5t64 libqt5sql5t64 libqt5test5t64 libqt5widgets5t64 libqt5xml5t64 libreadline8t64 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsensors-config libsensors5 libsm6 libssh-4 libsub-override-perl libtool libuchardet0 libuv1t64 libvulkan-dev libvulkan1 libwacom-common libwacom9 libwayland-client0 libwayland-server0 libx11-6 libx11-data libx11-dev libx11-xcb1 libxau-dev libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0 libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxerces-c-dev libxerces-c3.2t64 libxext-dev libxext6 libxfixes3 libxkbcommon-x11-0 libxkbcommon0 libxml2 libxrender1 libxshmfence1 libxxf86vm1 m4 man-db media-types netbase nlohmann-json3-dev node-jquery pkg-config pkgconf pkgconf-bin po-debconf python3 python3-docutils python3-minimal python3-roman python3.12 python3.12-minimal qt5-qmake qt5-qmake-bin qtbase5-dev qtbase5-dev-tools qtchooser sgml-base shared-mime-info x11-common x11proto-dev xkb-data xml-core xorg-sgml-doctools xtrans-dev zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc cmake-doc cmake-format elpa-cmake-mode ninja-build dh-make gettext-doc libasprintf-dev libgettextpo-dev groff apache2 | lighttpd | httpd lrzip libboost-doc libboost1.83-doc libboost-container1.83-dev libboost-context1.83-dev libboost-contract1.83-dev libboost-coroutine1.83-dev libboost-exception1.83-dev libboost-fiber1.83-dev libboost-graph-parallel1.83-dev libboost-graph1.83-dev libboost-json1.83-dev libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev libboost-numpy1.83-dev libboost-python1.83-dev libboost-random1.83-dev libboost-stacktrace1.83-dev libboost-test1.83-dev libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev cups-common libcurl4-doc libgnutls28-dev libidn-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev libeigen3-doc low-memory-monitor icu-doc libjs-jquery-ui-docs liblzma-doc pciutils libthai0 qgnomeplatform-qt5 qt5-image-formats-plugins lm-sensors libtool-doc gfortran | fortran95-compiler gcj-jdk libwacom-bin libx11-doc libxcb-doc libxerces-c-doc libxext-doc m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv docutils-doc fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french texlive-latex-base texlive-latex-recommended python3.12-venv python3.12-doc binfmt-support default-libmysqlclient-dev firebird-dev libpq-dev libsqlite3-dev unixodbc-dev sgml-base-doc Recommended packages: curl | wget | lynx dbus libarchive-cpio-perl libgl1-amber-dri libglib2.0-data xdg-user-dirs libldap-common publicsuffix qttranslations5-l10n libqt5svg5 qt5-gtk-platformtheme qtwayland5 libqt5sql5-sqlite | libqt5sql5-mysql | libqt5sql5-odbc | libqt5sql5-psql | libqt5sql5-tds | libqt5sql5-ibase libsasl2-modules libltdl-dev mesa-vulkan-drivers | vulkan-icd libjs-sizzle libmail-sendmail-perl libpaper-utils python3-pil python3-pygments libqt5opengl5-dev The following packages will be REMOVED: libreadline8* The following NEW packages will be installed: autoconf automake autopoint autotools-dev cmake cmake-data debhelper debugedit dh-autoreconf dh-strip-nondeterminism docutils-common dwz file fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome fonts-freefont-ttf gettext gettext-base groff-base icu-devtools intltool-debian javascript-common libarchive-zip-perl libarchive13t64 libavahi-client3 libavahi-common-data libavahi-common3 libboost-atomic1.83-dev libboost-atomic1.83.0 libboost-chrono-dev libboost-chrono1.83-dev libboost-chrono1.83.0t64 libboost-date-time1.83-dev libboost-date-time1.83.0 libboost-dev libboost-filesystem-dev libboost-filesystem1.83-dev libboost-filesystem1.83.0 libboost-iostreams-dev libboost-iostreams1.83-dev libboost-iostreams1.83.0 libboost-program-options-dev libboost-program-options1.83-dev libboost-program-options1.83.0 libboost-regex1.83-dev libboost-regex1.83.0 libboost-serialization1.83-dev libboost-serialization1.83.0 libboost-system-dev libboost-system1.83-dev libboost-system1.83.0 libboost-thread-dev libboost-thread1.83-dev libboost-thread1.83.0 libboost1.83-dev libbrotli1 libbsd0 libcups2t64 libcurl3t64-gnutls libcurl4-gnutls-dev libcurl4t64 libdbus-1-3 libdebhelper-perl libdeflate-dev libdeflate0 libdouble-conversion3 libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libdw1t64 libedit2 libegl-dev libegl-mesa0 libegl1 libeigen3-dev libelf1t64 libevdev2 libexpat1 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgbm1 libgl-dev libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0t64 libglu1-mesa libglu1-mesa-dev libglvnd0 libglx-dev libglx-mesa0 libglx0 libgraphite2-3 libgudev-1.0-0 libharfbuzz0b libhts-dev libhts3t64 libhtscodecs2 libice6 libicu-dev libicu74 libinput-bin libinput10 libjpeg-turbo8 libjpeg8 libjs-bootstrap4 libjs-filesaver libjs-jquery libjs-jquery-ui libjs-popper.js libjsoncpp25 libldap2 libllvm17 liblzma-dev libmagic-mgc libmagic1t64 libmd4c0 libmtdev1t64 libnghttp2-14 libopengl-dev libopengl0 libpciaccess0 libpcre2-16-0 libpipeline1 libpkgconf3 libpsl5 libpthread-stubs0-dev libpwizlite-dev libpwizlite3t64 libpython3-stdlib libpython3.12-minimal libpython3.12-stdlib libqt5concurrent5t64 libqt5core5t64 libqt5dbus5t64 libqt5gui5t64 libqt5network5t64 libqt5printsupport5t64 libqt5sql5t64 libqt5test5t64 libqt5widgets5t64 libqt5xml5t64 libreadline8t64 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsensors-config libsensors5 libsm6 libssh-4 libsub-override-perl libtool libuchardet0 libuv1t64 libvulkan-dev libvulkan1 libwacom-common libwacom9 libwayland-client0 libwayland-server0 libx11-6 libx11-data libx11-dev libx11-xcb1 libxau-dev libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0 libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxerces-c-dev libxerces-c3.2t64 libxext-dev libxext6 libxfixes3 libxkbcommon-x11-0 libxkbcommon0 libxml2 libxrender1 libxshmfence1 libxxf86vm1 m4 man-db media-types netbase nlohmann-json3-dev node-jquery pkg-config pkgconf pkgconf-bin po-debconf python3 python3-docutils python3-minimal python3-roman python3.12 python3.12-minimal qt5-qmake qt5-qmake-bin qtbase5-dev qtbase5-dev-tools qtchooser sbuild-build-depends-main-dummy sgml-base shared-mime-info x11-common x11proto-dev xkb-data xml-core xorg-sgml-doctools xtrans-dev zlib1g-dev 0 upgraded, 238 newly installed, 1 to remove and 0 not upgraded. Need to get 152 MB of archives. After this operation, 785 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [848 B] Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libreadline8t64 amd64 8.2-4build1 [153 kB] Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libpython3.12-minimal amd64 3.12.2-4build4 [830 kB] Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libexpat1 amd64 2.6.1-2build1 [87.0 kB] Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 python3.12-minimal amd64 3.12.2-4build4 [2201 kB] Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 python3-minimal amd64 3.12.2-0ubuntu2 [27.1 kB] Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 media-types all 10.1.0 [27.5 kB] Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 netbase all 6.4 [13.1 kB] Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libpython3.12-stdlib amd64 3.12.2-4build4 [2001 kB] Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 python3.12 amd64 3.12.2-4build4 [645 kB] Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libpython3-stdlib amd64 3.12.2-0ubuntu2 [9848 B] Get:12 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 python3 amd64 3.12.2-0ubuntu2 [24.1 kB] Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 sgml-base all 1.31 [11.4 kB] Get:14 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libbsd0 amd64 0.12.1-1build1 [41.2 kB] Get:15 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libdbus-1-3 amd64 1.14.10-4ubuntu3 [210 kB] Get:16 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libelf1t64 amd64 0.190-1.1build3 [57.6 kB] Get:17 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libglib2.0-0t64 amd64 2.80.0-6build1 [1311 kB] Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libicu74 amd64 74.2-1ubuntu1 [10.9 MB] Get:19 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libxml2 amd64 2.9.14+dfsg-1.3ubuntu3 [762 kB] Get:20 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Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 libedit2 amd64 3.1-20230828-1 [95.8 kB] Get:31 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libnghttp2-14 amd64 1.59.0-1build2 [73.8 kB] Get:32 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libpipeline1 amd64 1.5.7-2 [23.6 kB] Get:33 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libuv1t64 amd64 1.48.0-1.1build1 [97.3 kB] Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 libxau6 amd64 1:1.0.9-1build5 [7634 B] Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 libxdmcp6 amd64 1:1.1.3-0ubuntu5 [10.9 kB] Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb1 amd64 1.15-1 [48.0 kB] Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 libx11-data all 2:1.8.7-1 [115 kB] Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 libx11-6 amd64 2:1.8.7-1 [642 kB] Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 libxext6 amd64 2:1.3.4-1build1 [31.8 kB] Get:40 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 man-db amd64 2.12.0-4build1 [1237 kB] Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 m4 amd64 1.4.19-4 [243 kB] Get:42 http://ftpmaster.internal/ubuntu noble/main amd64 autoconf all 2.71-3 [339 kB] Get:43 http://ftpmaster.internal/ubuntu noble/main amd64 autotools-dev all 20220109.1 [44.9 kB] Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 automake all 1:1.16.5-1.3ubuntu1 [558 kB] Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 autopoint all 0.21-14ubuntu1 [422 kB] Get:46 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libarchive13t64 amd64 3.7.2-1.1ubuntu3 [382 kB] Get:47 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libbrotli1 amd64 1.1.0-2build2 [331 kB] Get:48 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-5ubuntu2 [20.2 kB] Get:49 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-5ubuntu2 [53.2 kB] Get:50 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libldap2 amd64 2.6.7+dfsg-1~exp1ubuntu7 [195 kB] Get:51 http://ftpmaster.internal/ubuntu noble-updates/main amd64 libpsl5 amd64 0.21.2-1build1 [56.8 kB] Get:52 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2build7 [56.3 kB] Get:53 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libssh-4 amd64 0.10.6-2build2 [188 kB] Get:54 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libcurl4t64 amd64 8.5.0-2ubuntu9 [340 kB] Get:55 http://ftpmaster.internal/ubuntu noble/main amd64 libjsoncpp25 amd64 1.9.5-6 [82.3 kB] Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 librhash0 amd64 1.4.3-3 [128 kB] Get:57 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 cmake-data all 3.28.3-1build6 [2155 kB] Get:58 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 cmake amd64 3.28.3-1build6 [11.2 MB] Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libdebhelper-perl all 13.14.1ubuntu5 [89.8 kB] Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 libtool all 2.4.7-7 [166 kB] Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 dh-autoreconf all 20 [16.1 kB] Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB] Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libsub-override-perl all 0.10-1 [10.0 kB] Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [18.1 kB] Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 dh-strip-nondeterminism all 1.13.1-1 [5362 B] Get:66 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libdw1t64 amd64 0.190-1.1build3 [261 kB] Get:67 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 debugedit amd64 1:5.0-5build1 [46.1 kB] Get:68 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 dwz amd64 0.15-1build6 [115 kB] Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 gettext amd64 0.21-14ubuntu1 [864 kB] Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 po-debconf all 1.0.21+nmu1 [233 kB] Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 debhelper all 13.14.1ubuntu5 [869 kB] Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 xml-core all 0.19 [20.3 kB] Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 docutils-common all 0.20.1+dfsg-3 [132 kB] Get:75 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libfreetype6 amd64 2.13.2+dfsg-1build3 [402 kB] Get:76 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] Get:77 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] Get:78 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-freefont-ttf all 20211204+svn4273-2 [5641 kB] Get:79 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 fontconfig-config amd64 2.15.0-1.1ubuntu2 [37.3 kB] Get:80 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libfontconfig1 amd64 2.15.0-1.1ubuntu2 [139 kB] Get:81 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 fontconfig amd64 2.15.0-1.1ubuntu2 [180 kB] Get:82 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] Get:83 http://ftpmaster.internal/ubuntu noble/main amd64 icu-devtools amd64 74.2-1ubuntu1 [212 kB] Get:84 http://ftpmaster.internal/ubuntu noble/main amd64 javascript-common all 11+nmu1 [5936 B] Get:85 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libavahi-common-data amd64 0.8-13ubuntu5 [29.6 kB] Get:86 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libavahi-common3 amd64 0.8-13ubuntu5 [23.3 kB] Get:87 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libavahi-client3 amd64 0.8-13ubuntu5 [26.8 kB] Get:88 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libboost1.83-dev amd64 1.83.0-2.1ubuntu3 [10.7 MB] Get:89 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libboost-atomic1.83.0 amd64 1.83.0-2.1ubuntu3 [240 kB] Get:90 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libboost-atomic1.83-dev amd64 1.83.0-2.1ubuntu3 [235 kB] Get:91 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libboost-chrono1.83.0t64 amd64 1.83.0-2.1ubuntu3 [245 kB] Get:92 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libboost-chrono1.83-dev amd64 1.83.0-2.1ubuntu3 [246 kB] Get:93 http://ftpmaster.internal/ubuntu noble/universe amd64 libboost-chrono-dev amd64 1.83.0.1ubuntu2 [4672 B] Get:94 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libboost-date-time1.83.0 amd64 1.83.0-2.1ubuntu3 [236 kB] Get:95 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libboost-serialization1.83.0 amd64 1.83.0-2.1ubuntu3 [341 kB] Get:96 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libboost-serialization1.83-dev amd64 1.83.0-2.1ubuntu3 [387 kB] Get:97 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libboost-date-time1.83-dev amd64 1.83.0-2.1ubuntu3 [239 kB] Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 libboost-dev amd64 1.83.0.1ubuntu2 [4308 B] Get:99 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libboost-filesystem1.83.0 amd64 1.83.0-2.1ubuntu3 [283 kB] Get:100 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libboost-system1.83.0 amd64 1.83.0-2.1ubuntu3 [236 kB] Get:101 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libboost-system1.83-dev amd64 1.83.0-2.1ubuntu3 [231 kB] Get:102 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 libboost-filesystem1.83-dev amd64 1.83.0-2.1ubuntu3 [301 kB] Get:103 http://ftpmaster.internal/ubuntu noble/universe amd64 libboost-filesystem-dev amd64 1.83.0.1ubuntu2 [4096 B] Get:104 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libboost-regex1.83.0 amd64 1.83.0-2.1ubuntu3 [339 kB] Get:105 http://ftpmaster.internal/ubuntu noble/main amd64 libicu-dev amd64 74.2-1ubuntu1 [11.9 MB] Get:106 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libboost-regex1.83-dev amd64 1.83.0-2.1ubuntu3 [355 kB] Get:107 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libboost-iostreams1.83.0 amd64 1.83.0-2.1ubuntu3 [259 kB] Get:108 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 libboost-iostreams1.83-dev amd64 1.83.0-2.1ubuntu3 [264 kB] Get:109 http://ftpmaster.internal/ubuntu noble/universe amd64 libboost-iostreams-dev amd64 1.83.0.1ubuntu2 [4046 B] Get:110 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libboost-program-options1.83.0 amd64 1.83.0-2.1ubuntu3 [320 kB] Get:111 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libboost-program-options1.83-dev amd64 1.83.0-2.1ubuntu3 [388 kB] Get:112 http://ftpmaster.internal/ubuntu noble/main amd64 libboost-program-options-dev amd64 1.83.0.1ubuntu2 [4086 B] Get:113 http://ftpmaster.internal/ubuntu noble/universe amd64 libboost-system-dev amd64 1.83.0.1ubuntu2 [4206 B] Get:114 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libboost-thread1.83.0 amd64 1.83.0-2.1ubuntu3 [276 kB] Get:115 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libboost-thread1.83-dev amd64 1.83.0-2.1ubuntu3 [282 kB] Get:116 http://ftpmaster.internal/ubuntu noble/main amd64 libboost-thread-dev amd64 1.83.0.1ubuntu2 [4088 B] Get:117 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libcups2t64 amd64 2.4.7-1.2ubuntu3 [269 kB] Get:118 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libcurl3t64-gnutls amd64 8.5.0-2ubuntu9 [333 kB] Get:119 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libcurl4-gnutls-dev amd64 8.5.0-2ubuntu9 [438 kB] Get:120 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB] Get:121 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate-dev amd64 1.19-1 [50.9 kB] Get:122 http://ftpmaster.internal/ubuntu noble/universe amd64 libdouble-conversion3 amd64 3.3.0-1 [39.9 kB] Get:123 http://ftpmaster.internal/ubuntu noble/main amd64 libdrm-amdgpu1 amd64 2.4.120-2 [20.4 kB] Get:124 http://ftpmaster.internal/ubuntu noble/main amd64 libpciaccess0 amd64 0.17-3 [18.9 kB] Get:125 http://ftpmaster.internal/ubuntu noble/main amd64 libdrm-intel1 amd64 2.4.120-2 [63.8 kB] Get:126 http://ftpmaster.internal/ubuntu noble/main amd64 libdrm-nouveau2 amd64 2.4.120-2 [17.6 kB] Get:127 http://ftpmaster.internal/ubuntu noble/main amd64 libdrm-radeon1 amd64 2.4.120-2 [20.7 kB] Get:128 http://ftpmaster.internal/ubuntu noble/main amd64 libglvnd0 amd64 1.7.0-1 [69.5 kB] Get:129 http://ftpmaster.internal/ubuntu noble/main amd64 libwayland-server0 amd64 1.22.0-2.1 [33.7 kB] Get:130 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-randr0 amd64 1.15-1 [18.1 kB] Get:131 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libgbm1 amd64 24.0.3-1ubuntu4 [42.3 kB] Get:132 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libglapi-mesa amd64 24.0.3-1ubuntu4 [40.8 kB] Get:133 http://ftpmaster.internal/ubuntu noble/main amd64 libwayland-client0 amd64 1.22.0-2.1 [26.2 kB] Get:134 http://ftpmaster.internal/ubuntu noble/main amd64 libx11-xcb1 amd64 2:1.8.7-1 [7798 B] Get:135 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-dri2-0 amd64 1.15-1 [7276 B] Get:136 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-dri3-0 amd64 1.15-1 [7174 B] Get:137 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-present0 amd64 1.15-1 [5708 B] Get:138 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-sync1 amd64 1.15-1 [9358 B] Get:139 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-xfixes0 amd64 1.15-1 [10.2 kB] Get:140 http://ftpmaster.internal/ubuntu noble/main amd64 libxshmfence1 amd64 1.3-1build4 [5394 B] Get:141 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libegl-mesa0 amd64 24.0.3-1ubuntu4 [115 kB] Get:142 http://ftpmaster.internal/ubuntu noble/main amd64 libegl1 amd64 1.7.0-1 [28.5 kB] Get:143 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-glx0 amd64 1.15-1 [24.6 kB] Get:144 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B] Get:145 http://ftpmaster.internal/ubuntu noble/main amd64 libxfixes3 amd64 1:6.0.0-2 [10.9 kB] Get:146 http://ftpmaster.internal/ubuntu noble/main amd64 libxxf86vm1 amd64 1:1.1.4-1build3 [10.4 kB] Get:147 http://ftpmaster.internal/ubuntu noble/main amd64 libvulkan1 amd64 1.3.275.0-1 [142 kB] Get:148 http://ftpmaster.internal/ubuntu noble-updates/main amd64 libllvm17 amd64 1:17.0.6-5build1 [26.2 MB] Get:149 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libsensors-config all 1:3.6.0-9build1 [5546 B] Get:150 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libsensors5 amd64 1:3.6.0-9build1 [26.6 kB] Get:151 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libgl1-mesa-dri amd64 24.0.3-1ubuntu4 [8942 kB] Get:152 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libglx-mesa0 amd64 24.0.3-1ubuntu4 [154 kB] Get:153 http://ftpmaster.internal/ubuntu noble/main amd64 libglx0 amd64 1.7.0-1 [38.7 kB] Get:154 http://ftpmaster.internal/ubuntu noble/main amd64 libgl1 amd64 1.7.0-1 [103 kB] Get:155 http://ftpmaster.internal/ubuntu noble/main amd64 xorg-sgml-doctools all 1:1.11-1.1 [10.9 kB] Get:156 http://ftpmaster.internal/ubuntu noble/main amd64 x11proto-dev all 2023.2-1 [602 kB] Get:157 http://ftpmaster.internal/ubuntu noble/main amd64 libxau-dev amd64 1:1.0.9-1build5 [9724 B] Get:158 http://ftpmaster.internal/ubuntu noble/main amd64 libxdmcp-dev amd64 1:1.1.3-0ubuntu5 [26.5 kB] Get:159 http://ftpmaster.internal/ubuntu noble/main amd64 xtrans-dev all 1.4.0-1 [68.9 kB] Get:160 http://ftpmaster.internal/ubuntu noble/main amd64 libpthread-stubs0-dev amd64 0.4-1build2 [5516 B] Get:161 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb1-dev amd64 1.15-1 [85.8 kB] Get:162 http://ftpmaster.internal/ubuntu noble/main amd64 libx11-dev amd64 2:1.8.7-1 [731 kB] Get:163 http://ftpmaster.internal/ubuntu noble/main amd64 libglx-dev amd64 1.7.0-1 [14.2 kB] Get:164 http://ftpmaster.internal/ubuntu noble/main amd64 libgl-dev amd64 1.7.0-1 [102 kB] Get:165 http://ftpmaster.internal/ubuntu noble/main amd64 libegl-dev amd64 1.7.0-1 [18.2 kB] Get:166 http://ftpmaster.internal/ubuntu noble/main amd64 libopengl0 amd64 1.7.0-1 [33.0 kB] Get:167 http://ftpmaster.internal/ubuntu noble/main amd64 libglu1-mesa amd64 9.0.2-1.1 [151 kB] Get:168 http://ftpmaster.internal/ubuntu noble/main amd64 libopengl-dev amd64 1.7.0-1 [3440 B] Get:169 http://ftpmaster.internal/ubuntu noble/main amd64 libglu1-mesa-dev amd64 9.0.2-1.1 [237 kB] Get:170 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB] Get:171 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libgudev-1.0-0 amd64 1:238-5ubuntu1 [15.9 kB] Get:172 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libharfbuzz0b amd64 8.3.0-2build2 [469 kB] Get:173 http://ftpmaster.internal/ubuntu noble/universe amd64 libhtscodecs2 amd64 1.6.0-1 [98.9 kB] Get:174 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 libhts3t64 amd64 1.19+ds-1.1build3 [437 kB] Get:175 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 liblzma-dev amd64 5.6.1+really5.4.5-1build1 [176 kB] Get:176 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3.1ubuntu2 [894 kB] Get:177 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 libhts-dev amd64 1.19+ds-1.1build3 [5916 kB] Get:178 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] Get:179 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB] Get:180 http://ftpmaster.internal/ubuntu noble/main amd64 libevdev2 amd64 1.13.1+dfsg-1 [37.2 kB] Get:181 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libwacom-common all 2.10.0-2 [63.4 kB] Get:182 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libwacom9 amd64 2.10.0-2 [23.9 kB] Get:183 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libinput-bin amd64 1.25.0-1ubuntu2 [22.2 kB] Get:184 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libmtdev1t64 amd64 1.1.6-1.1build1 [14.4 kB] Get:185 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libinput10 amd64 1.25.0-1ubuntu2 [133 kB] Get:186 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB] Get:187 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] Get:188 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] Get:189 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] Get:190 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-filesaver all 2.0.4+dfsg+~2.0.5-2 [8804 B] Get:191 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] Get:192 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] Get:193 http://ftpmaster.internal/ubuntu noble/universe amd64 libmd4c0 amd64 0.4.8-1 [42.0 kB] Get:194 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu1 [211 kB] Get:195 http://ftpmaster.internal/ubuntu noble/main amd64 libpkgconf3 amd64 1.8.1-2 [31.1 kB] Get:196 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 libpwizlite3t64 amd64 3.0.5-2.1build2 [795 kB] Get:197 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 libpwizlite-dev amd64 3.0.5-2.1build2 [1333 kB] Get:198 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 libqt5core5t64 amd64 5.15.12+dfsg-3ubuntu7 [2009 kB] Get:199 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 libqt5concurrent5t64 amd64 5.15.12+dfsg-3ubuntu7 [35.7 kB] Get:200 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 libqt5dbus5t64 amd64 5.15.12+dfsg-3ubuntu7 [220 kB] Get:201 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 libqt5network5t64 amd64 5.15.12+dfsg-3ubuntu7 [723 kB] Get:202 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB] Get:203 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-icccm4 amd64 0.4.1-1.1build2 [11.5 kB] Get:204 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-util1 amd64 0.4.0-1build2 [11.4 kB] Get:205 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-image0 amd64 0.4.0-2 [11.5 kB] Get:206 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-keysyms1 amd64 0.4.0-1build3 [8746 B] Get:207 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB] Get:208 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render-util0 amd64 0.3.9-1build3 [10.3 kB] Get:209 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shape0 amd64 1.15-1 [6106 B] Get:210 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-xinerama0 amd64 1.15-1 [5376 B] Get:211 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-xinput0 amd64 1.15-1 [33.5 kB] Get:212 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-xkb1 amd64 1.15-1 [32.1 kB] Get:213 http://ftpmaster.internal/ubuntu noble/main amd64 libxkbcommon0 amd64 1.6.0-1 [123 kB] Get:214 http://ftpmaster.internal/ubuntu noble/main amd64 libxkbcommon-x11-0 amd64 1.6.0-1 [14.4 kB] Get:215 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB] Get:216 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 libqt5gui5t64 amd64 5.15.12+dfsg-3ubuntu7 [3747 kB] Get:217 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 libqt5widgets5t64 amd64 5.15.12+dfsg-3ubuntu7 [2561 kB] Get:218 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 libqt5printsupport5t64 amd64 5.15.12+dfsg-3ubuntu7 [208 kB] Get:219 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 libqt5sql5t64 amd64 5.15.12+dfsg-3ubuntu7 [122 kB] Get:220 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 libqt5test5t64 amd64 5.15.12+dfsg-3ubuntu7 [148 kB] Get:221 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 libqt5xml5t64 amd64 5.15.12+dfsg-3ubuntu7 [123 kB] Get:222 http://ftpmaster.internal/ubuntu noble/main amd64 libvulkan-dev amd64 1.3.275.0-1 [1239 kB] Get:223 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 libxerces-c3.2t64 amd64 3.2.4+debian-1.2ubuntu2 [919 kB] Get:224 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 libxerces-c-dev amd64 3.2.4+debian-1.2ubuntu2 [1815 kB] Get:225 http://ftpmaster.internal/ubuntu noble/main amd64 libxext-dev amd64 2:1.3.4-1build1 [84.7 kB] Get:226 http://ftpmaster.internal/ubuntu noble/universe amd64 nlohmann-json3-dev all 3.11.3-1 [190 kB] Get:227 http://ftpmaster.internal/ubuntu noble/universe amd64 node-jquery all 3.6.1+dfsg+~3.5.14-1 [160 kB] Get:228 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf-bin amd64 1.8.1-2 [20.7 kB] Get:229 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf amd64 1.8.1-2 [16.8 kB] Get:230 http://ftpmaster.internal/ubuntu noble/main amd64 pkg-config amd64 1.8.1-2 [7170 B] Get:231 http://ftpmaster.internal/ubuntu noble/main amd64 python3-roman all 3.3-3 [9632 B] Get:232 http://ftpmaster.internal/ubuntu noble/main amd64 python3-docutils all 0.20.1+dfsg-3 [393 kB] Get:233 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 qt5-qmake-bin amd64 5.15.12+dfsg-3ubuntu7 [1140 kB] Get:234 http://ftpmaster.internal/ubuntu noble/universe amd64 qtchooser amd64 66-2build1 [24.7 kB] Get:235 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 qt5-qmake amd64 5.15.12+dfsg-3ubuntu7 [209 kB] Get:236 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 qtbase5-dev-tools amd64 5.15.12+dfsg-3ubuntu7 [822 kB] Get:237 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 qtbase5-dev amd64 5.15.12+dfsg-3ubuntu7 [1125 kB] Get:238 http://ftpmaster.internal/ubuntu noble/universe amd64 libeigen3-dev all 3.4.0-4 [1056 kB] Preconfiguring packages ... Fetched 152 MB in 1s (102 MB/s) dpkg: libreadline8:amd64: dependency problems, but removing anyway as you requested: gpgconf depends on libreadline8 (>= 6.0). gpg depends on libreadline8 (>= 6.0). (Reading database ... 15814 files and directories currently installed.) Removing libreadline8:amd64 (8.2-3) ... Selecting previously unselected package libreadline8t64:amd64. (Reading database ... 15802 files and directories currently installed.) Preparing to unpack .../libreadline8t64_8.2-4build1_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-4build1) ... Selecting previously unselected package libpython3.12-minimal:amd64. Preparing to unpack .../libpython3.12-minimal_3.12.2-4build4_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.2-4build4) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.1-2build1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.1-2build1) ... 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Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-173-generic #191-Ubuntu SMP Fri Feb 2 13:55:07 UTC 2024 amd64 (x86_64) Toolchain package versions: binutils_2.42-4ubuntu2 dpkg-dev_1.22.6ubuntu6 g++-13_13.2.0-23ubuntu3 gcc-13_13.2.0-23ubuntu3 libc6-dev_2.39-0ubuntu8 libstdc++-13-dev_13.2.0-23ubuntu3 libstdc++6_14-20240330-1ubuntu2 linux-libc-dev_6.8.0-11.11 Package versions: adduser_3.137ubuntu1 advancecomp_2.5-1 apt_2.7.14build2 apt-utils_2.7.14build2 autoconf_2.71-3 automake_1:1.16.5-1.3ubuntu1 autopoint_0.21-14ubuntu1 autotools-dev_20220109.1 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uuid-runtime_2.39.3-9ubuntu4 x11-common_1:7.7+23ubuntu2 x11proto-dev_2023.2-1 xkb-data_2.41-2 xml-core_0.19 xorg-sgml-doctools_1:1.11-1.1 xtrans-dev_1.4.0-1 xz-utils_5.6.1+really5.4.5-1build1 zlib1g_1:1.3.dfsg-3.1ubuntu2 zlib1g-dev_1:1.3.dfsg-3.1ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: toppic Binary: toppic, toppic-common Architecture: any all Version: 1.5.3+dfsg1-1build3 Maintainer: Ubuntu Developers Uploaders: Filippo Rusconi Homepage: http://proteomics.informatics.iupui.edu/software/toppic/index.html Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/debichem-team/toppic Vcs-Git: https://salsa.debian.org/debichem-team/toppic.git Build-Depends: debhelper-compat (= 13), cmake, pkg-config, libhts-dev, libboost-dev, libboost-filesystem-dev, libboost-program-options-dev, libboost-thread-dev, libboost-system-dev, libboost-iostreams-dev, libboost-chrono-dev, libeigen3-dev, libxerces-c-dev, qtbase5-dev, libpwizlite-dev, nlohmann-json3-dev, zlib1g-dev, python3-docutils, libjs-filesaver, fonts-font-awesome, fonts-freefont-ttf, libjs-bootstrap4, libjs-popper.js, libjs-jquery-ui, node-jquery Package-List: toppic deb science optional arch=any toppic-common deb science optional arch=all Checksums-Sha1: 0308e54adcd49c048ce1d88530a9d4c386582708 27017512 toppic_1.5.3+dfsg1.orig.tar.gz ccc5b40b6158fb52fc88488890e0de347d610001 136580 toppic_1.5.3+dfsg1-1build3.debian.tar.xz Checksums-Sha256: 74e305fc0ee99c6b268b042587adaca1f775c4e7c87249692dbee3e44c564ae7 27017512 toppic_1.5.3+dfsg1.orig.tar.gz 079cee9d6fa882b522b6fb41e8227d33610af176911a72976d89d094c03d21ac 136580 toppic_1.5.3+dfsg1-1build3.debian.tar.xz Files: 0f1e142722fc75a2d52deed09297da51 27017512 toppic_1.5.3+dfsg1.orig.tar.gz b8043e20a8bd2dff6bc20b6253eab284 136580 toppic_1.5.3+dfsg1-1build3.debian.tar.xz Original-Maintainer: The Debichem Group -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEoIn7Nqr72tWswTJQafeQFxohCYQFAmYKcAQACgkQafeQFxoh CYTouA/+PfOdyS4uS0cVTDZA+zcnUpoykHAOUN0ieJZKvg+FhpgStbjNyB1eN7Th kG9dVMGlyXWJjFgTT4GV0U5zdAxdArYJn8XwsXs9CWhryOwH6I4+B9K+UN7cjWOj HZUOjb0dEPFPxYL19cDys3dZe4Df3i5lpszLVKORYLOeeviJW2S18G6Ssts44RKu tn1AsB5kHYDNta6BHbpodhAtqIBuzZTxQpMZiz1UNu5nnJgv1cjx37LiKhBdmOjC BJH+NDJSH2fVVDeao+BRnGFx/NCA5JqudpoZ16QivQLigApmUOVpo5h7RhLuZQzb RUcBKvKiKKddWoc3+xcDT+rdPfH5KojOfWijO0PNW6aJjqDSpKk3JehkzcsX44Uo 2uFiPDY1b1/5r1B5ky0jxH6ufYMUULbX31oLXF/u4CaPRvcGfIyljd/01lR0lorz +/bC77ydTNUVKDVk8/CoY3jd0zTPC8yU/WsYZPRsi/WIs+s4v7VcbWLevPoIIWbK Cn2WA9BLVxh0UZ8W3MtnH78xgZWbbm3yG8zoPHBM/CyYskeWdK3FtgXWUkoNR80Y 7LvPoO5JxakyyfDg7uBLCe77Gu5sxzQzErJroYA5DatCnLanShL55X5P7u9JOnAs dpC0nO6IIIGXR0m9ivbHQer54P9wHURnm8NQ7XJ2eIAM2U79L2I= =4oeN -----END PGP SIGNATURE----- gpgv: Signature made Mon Apr 1 08:27:48 2024 UTC gpgv: using RSA key A089FB36AAFBDAD5ACC1325069F790171A210984 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./toppic_1.5.3+dfsg1-1build3.dsc: no acceptable signature found dpkg-source: info: extracting toppic in /<> dpkg-source: info: unpacking toppic_1.5.3+dfsg1.orig.tar.gz dpkg-source: info: unpacking toppic_1.5.3+dfsg1-1build3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0001-Use-the-CMake-build-system-to-configure-the-DATADIR.patch dpkg-source: info: applying 0002-Fix-the-erroneous-bin-install-directory.patch dpkg-source: info: applying 0003-Ensure-the-GUI-variants-are-installed-and-shipped.patch dpkg-source: info: applying 0004-Patch-to-use-libpwizlite-and-libhts-from-the-system.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-28014020 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-28014020 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-28014020 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -b -rfakeroot dpkg-buildpackage: info: source package toppic dpkg-buildpackage: info: source version 1.5.3+dfsg1-1build3 dpkg-buildpackage: info: source distribution noble dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=cmake debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' rm -f debian/topfd.1 rm -f debian/toppic.1 rm -f debian/topmg.1 rm -f debian/topdiff.1 dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/toppic.substvars debian/toppic-common.substvars debian/files rm -fr -- debian/toppic/ debian/tmp/ debian/toppic-common/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) make[1]: Leaving directory '/<>' dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/toppic.substvars debian/toppic-common.substvars debian/files rm -fr -- debian/toppic/ debian/tmp/ debian/toppic-common/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary dh binary --buildsystem=cmake dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' rst2man debian/topfd.1.rst > debian/topfd.1 rst2man debian/toppic.1.rst > debian/toppic.1 rst2man debian/topmg.1.rst > debian/topmg.1 rst2man debian/topdiff.1.rst > debian/topdiff.1 dh_auto_configure -- \ -DCMAKE_INSTALL_PREFIX="/" \ -DCMAKE_BUILD_TYPE=release cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DCMAKE_INSTALL_PREFIX=/ -DCMAKE_BUILD_TYPE=release .. CMake Deprecation Warning at CMakeLists.txt:2 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The C compiler identification is GNU 13.2.0 -- The CXX compiler identification is GNU 13.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- system name Linux -- PwizLite_INCLUDE_DIRS: /usr/include/pwizlite -- PwizLite_LIBRARIES: /usr/lib/x86_64-linux-gnu/libpwizlite.so.3.0.5 -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") The PkgConfig package was found. -- Checking for one of the modules 'htslib;libhts;hts' -- HtsLib_INCLUDE_DIRS: /usr/include -- HtsLib_LIBRARIES: hts -- cmake cxx flags -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=$ORIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -- Configuring done (0.6s) -- Generating done (0.3s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /<>/obj-x86_64-linux-gnu make[1]: Leaving directory '/<>' dh_auto_build -O--buildsystem=cmake cd obj-x86_64-linux-gnu && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/CMakeFiles /<>/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/obj-x86_64-linux-gnu' make -f CMakeFiles/topfd_autogen_timestamp_deps.dir/build.make CMakeFiles/topfd_autogen_timestamp_deps.dir/depend make -f CMakeFiles/topfd_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topfd_gui_autogen_timestamp_deps.dir/depend make -f CMakeFiles/topindex_autogen_timestamp_deps.dir/build.make CMakeFiles/topindex_autogen_timestamp_deps.dir/depend make -f CMakeFiles/topindex_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topindex_gui_autogen_timestamp_deps.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-x86_64-linux-gnu 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topdiff_autogen_timestamp_deps make -f CMakeFiles/topconvert_autogen_timestamp_deps.dir/build.make CMakeFiles/topconvert_autogen_timestamp_deps.dir/depend make -f CMakeFiles/topfd_autogen.dir/build.make CMakeFiles/topfd_autogen.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/CMakeFiles/topconvert_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/CMakeFiles/topfd_autogen.dir/DependInfo.cmake "--color=" [ 0%] Built target topmerge_autogen_timestamp_deps make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f CMakeFiles/topmerge_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topmerge_gui_autogen_timestamp_deps.dir/build make -f CMakeFiles/topfd_gui_autogen.dir/build.make CMakeFiles/topfd_gui_autogen.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'CMakeFiles/topmerge_gui_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/CMakeFiles/topfd_gui_autogen.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f CMakeFiles/topconvert_autogen_timestamp_deps.dir/build.make CMakeFiles/topconvert_autogen_timestamp_deps.dir/build make -f CMakeFiles/topfd_autogen.dir/build.make CMakeFiles/topfd_autogen.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'CMakeFiles/topconvert_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 0%] Built target topmerge_gui_autogen_timestamp_deps make -f CMakeFiles/topindex_autogen.dir/build.make CMakeFiles/topindex_autogen.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f CMakeFiles/topfd_gui_autogen.dir/build.make CMakeFiles/topfd_gui_autogen.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/CMakeFiles/topindex_autogen.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 0%] Built target topconvert_autogen_timestamp_deps make -f CMakeFiles/topindex_gui_autogen.dir/build.make CMakeFiles/topindex_gui_autogen.dir/depend [ 0%] Automatic MOC and UIC for target topfd /usr/bin/cmake -E cmake_autogen /<>/obj-x86_64-linux-gnu/CMakeFiles/topfd_autogen.dir/AutogenInfo.json release make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/CMakeFiles/topindex_gui_autogen.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f CMakeFiles/topindex_autogen.dir/build.make CMakeFiles/topindex_autogen.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 0%] Automatic MOC and UIC for target topfd_gui /usr/bin/cmake -E cmake_autogen /<>/obj-x86_64-linux-gnu/CMakeFiles/topfd_gui_autogen.dir/AutogenInfo.json release AutoGen: Refreshing parse cache because it doesn't exist. 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AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topfd_gui_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -dM -E -c /usr/share/cmake-3.28/Modules/CMakeCXXCompilerABI.cpp -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topindex_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -dM -E -c /usr/share/cmake-3.28/Modules/CMakeCXXCompilerABI.cpp -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu AutoGen: Parsing "SRC:/src/common/base/activation.hpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" AutoGen: Parsing "SRC:/src/common/base/ion.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" AutoGen: Parsing "SRC:/src/common/base/mod.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" AutoGen: Parsing "SRC:/src/common/base/residue.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" AutoGen: Parsing "SRC:/src/common/util/logger.hpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" AutoGen: Parsing "SRC:/src/console/topfd_argument.hpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.hpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.hpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.hpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" AutoGen: 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"SRC:/src/topfd/msreader/pw_ms_reader.hpp" AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_group_reader.hpp" AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_reader.hpp" AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_writer.hpp" AutoGen: Parsing "SRC:/src/topfd/spec/deconv_data.hpp" AutoGen: Parsing "SRC:/src/topfd/spec/deconv_data_util.hpp" AutoGen: Parsing "SRC:/src/common/base/activation.cpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" AutoGen: Parsing "SRC:/src/common/base/ion.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" AutoGen: Parsing "SRC:/src/common/base/mod.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" AutoGen: Parsing "SRC:/src/common/base/residue.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" AutoGen: Parsing "SRC:/src/common/util/logger.cpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" AutoGen: Parsing "SRC:/src/console/topfd.cpp" AutoGen: Parsing "SRC:/src/console/topfd_argument.cpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" AutoGen: Parsing "SRC:/src/para/sp_para.cpp" AutoGen: Parsing "SRC:/src/topfd/common/topfd_para.cpp" AutoGen: Parsing "SRC:/src/topfd/common/topfd_process.cpp" AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_one_sp.cpp" AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_process.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/co_table.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/dp.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/dp_a.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/dp_b.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/vertex.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/vertex_a.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/vertex_b.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/vertex_util.cpp" AutoGen: Parsing "SRC:/src/topfd/envcnn/env_cnn.cpp" AutoGen: Parsing "SRC:/src/topfd/feature_detect/feature_detect.cpp" AutoGen: Parsing "SRC:/src/topfd/feature_detect/feature_para.cpp" AutoGen: Parsing "SRC:/src/topfd/msreader/pw_ms_reader.cpp" AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_group_reader.cpp" AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_reader.cpp" AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_writer.cpp" AutoGen: Parsing "SRC:/src/topfd/spec/deconv_data.cpp" AutoGen: Parsing "SRC:/src/topfd/spec/deconv_data_util.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/topfd_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/topfd_autogen/deps" AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topfd_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topfd_autogen.dir/AutogenUsed.txt" /usr/bin/cmake -E touch /<>/obj-x86_64-linux-gnu/topfd_autogen/timestamp [ 0%] Automatic MOC and UIC for target topindex_gui /usr/bin/cmake -E cmake_autogen /<>/obj-x86_64-linux-gnu/CMakeFiles/topindex_gui_autogen.dir/AutogenInfo.json release AutoGen: Parsing "SRC:/src/common/base/activation.hpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" AutoGen: Parsing "SRC:/src/common/base/ion.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" AutoGen: Parsing "SRC:/src/common/base/mod.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" AutoGen: Parsing "SRC:/src/common/base/residue.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" AutoGen: Parsing "SRC:/src/common/util/logger.hpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" AutoGen: Parsing "SRC:/src/gui/topfd/threadtopfd.hpp" AutoGen: Parsing "SRC:/src/gui/topfd/topfddialog.hpp" AutoGen: Parsing "SRC:/src/gui/util/run_exe.h" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.hpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" AutoGen: Parsing "SRC:/src/common/base/activation.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.hpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" AutoGen: Parsing "SRC:/src/common/base/ion.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" AutoGen: Parsing "SRC:/src/common/base/mod.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" AutoGen: Parsing "SRC:/src/para/sp_para.hpp" AutoGen: Parsing "SRC:/src/topfd/common/topfd_para.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" AutoGen: Parsing "SRC:/src/topfd/common/topfd_process.hpp" AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_one_sp.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_process.hpp" AutoGen: Parsing "SRC:/src/common/base/residue.hpp" AutoGen: Parsing "SRC:/src/topfd/dp/co_table.hpp" AutoGen: Parsing "SRC:/src/topfd/dp/dp.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" AutoGen: Parsing "SRC:/src/topfd/dp/dp_a.hpp" AutoGen: Parsing "SRC:/src/topfd/dp/dp_b.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" AutoGen: Parsing "SRC:/src/topfd/dp/vertex.hpp" AutoGen: Parsing "SRC:/src/topfd/dp/vertex_a.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" AutoGen: Parsing "SRC:/src/topfd/dp/vertex_b.hpp" AutoGen: Parsing "SRC:/src/topfd/dp/vertex_util.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" AutoGen: Parsing "SRC:/src/topfd/envcnn/env_cnn.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" AutoGen: Parsing "SRC:/src/topfd/feature_detect/feature_detect.hpp" AutoGen: Parsing "SRC:/src/topfd/feature_detect/feature_para.hpp" AutoGen: Parsing "SRC:/src/topfd/msreader/pw_ms_reader.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_group_reader.hpp" AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_reader.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_writer.hpp" AutoGen: Parsing "SRC:/src/topfd/spec/deconv_data.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" AutoGen: Parsing "SRC:/src/topfd/spec/deconv_data_util.hpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" AutoGen: Parsing "SRC:/src/common/base/activation.cpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" AutoGen: Parsing "SRC:/src/common/util/logger.hpp" AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" AutoGen: Parsing "SRC:/src/common/base/ion.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" AutoGen: Parsing "SRC:/src/common/base/mod.cpp" AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" AutoGen: Parsing "SRC:/src/console/topindex_argument.hpp" AutoGen: Parsing "SRC:/src/common/base/residue.cpp" AutoGen: Parsing "SRC:/src/console/topindex_process.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" AutoGen: Parsing "SRC:/src/filter/index/diag_index.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.hpp" AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.hpp" AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.hpp" AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.hpp" AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.hpp" AutoGen: Parsing "SRC:/src/common/util/logger.cpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" AutoGen: Parsing "SRC:/src/para/sp_para.hpp" AutoGen: Parsing "SRC:/src/seq/alter.hpp" AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" AutoGen: Parsing "SRC:/src/seq/break_point.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" AutoGen: Parsing "SRC:/src/seq/db_block.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" AutoGen: Parsing "SRC:/src/gui/topfd/threadtopfd.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" AutoGen: Parsing "SRC:/src/gui/topfd/topfd_gui.cpp" AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" AutoGen: Parsing "SRC:/src/gui/topfd/topfddialog.cpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" AutoGen: Parsing "SRC:/src/gui/util/run_exe.cpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" AutoGen: Parsing "SRC:/src/common/base/activation.cpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" AutoGen: Parsing "SRC:/src/common/base/ion.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" AutoGen: Parsing "SRC:/src/common/base/mod.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" AutoGen: Parsing "SRC:/src/common/base/residue.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" AutoGen: Parsing "SRC:/src/common/util/logger.cpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" AutoGen: Parsing "SRC:/src/console/topindex.cpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" AutoGen: Parsing "SRC:/src/console/topindex_argument.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" AutoGen: Parsing "SRC:/src/console/topindex_process.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" AutoGen: Parsing "SRC:/src/filter/index/diag_index.cpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.cpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" AutoGen: Parsing "SRC:/src/para/sp_para.cpp" AutoGen: Parsing "SRC:/src/topfd/common/topfd_para.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.cpp" AutoGen: Parsing "SRC:/src/topfd/common/topfd_process.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.cpp" AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_one_sp.cpp" AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_process.cpp" AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/co_table.cpp" AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/dp.cpp" AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.cpp" AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/dp_a.cpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/dp_b.cpp" AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/vertex.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/vertex_a.cpp" AutoGen: Parsing "SRC:/src/para/sp_para.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/vertex_b.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" AutoGen: Parsing "SRC:/src/topfd/envcnn/env_cnn.cpp" AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" AutoGen: Parsing "SRC:/src/topfd/feature_detect/feature_detect.cpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" AutoGen: Parsing "SRC:/src/topfd/feature_detect/feature_para.cpp" AutoGen: Parsing "SRC:/src/topfd/msreader/pw_ms_reader.cpp" AutoGen: Parsing "SRC:/src/seq/break_point.cpp" AutoGen: Parsing "SRC:/src/seq/db_block.cpp" AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_group_reader.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_reader.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_writer.cpp" AutoGen: Parsing "SRC:/src/topfd/spec/deconv_data.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" AutoGen: Parsing "SRC:/src/topfd/spec/deconv_data_util.cpp" AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" AutoGen: Parsing "SRC:/src/topfd/dp/vertex_util.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" AutoGen: Parsing "SRC:/src/seq/alter.cpp" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/topindex_autogen/mocs_compilation.cpp" AutoUic: Generating "SRC:/obj-x86_64-linux-gnu/topfd_gui_autogen/include/ui_topfddialog.h", because it doesn't exist, from "SRC:/src/gui/topfd/topfddialog.ui" /usr/lib/qt5/bin/uic -o /<>/obj-x86_64-linux-gnu/topfd_gui_autogen/include/ui_topfddialog.h /<>/src/gui/topfd/topfddialog.ui AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topfd_gui_autogen/HZKSH7CGSX/moc_threadtopfd.cpp", because it doesn't exist, from "SRC:/src/gui/topfd/threadtopfd.hpp" /usr/lib/qt5/bin/moc -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --include /<>/obj-x86_64-linux-gnu/topfd_gui_autogen/moc_predefs.h --output-dep-file -o /<>/obj-x86_64-linux-gnu/topfd_gui_autogen/HZKSH7CGSX/moc_threadtopfd.cpp /<>/src/gui/topfd/threadtopfd.hpp AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topfd_gui_autogen/HZKSH7CGSX/moc_topfddialog.cpp", because it doesn't exist, from "SRC:/src/gui/topfd/topfddialog.hpp" /usr/lib/qt5/bin/moc -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --include /<>/obj-x86_64-linux-gnu/topfd_gui_autogen/moc_predefs.h --output-dep-file -o /<>/obj-x86_64-linux-gnu/topfd_gui_autogen/HZKSH7CGSX/moc_topfddialog.cpp /<>/src/gui/topfd/topfddialog.hpp AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/topindex_autogen/deps" AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topindex_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topindex_autogen.dir/AutogenUsed.txt" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -E touch /<>/obj-x86_64-linux-gnu/topindex_autogen/timestamp AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topindex_gui_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -dM -E -c /usr/share/cmake-3.28/Modules/CMakeCXXCompilerABI.cpp -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu [ 0%] Built target topfd_autogen make -f CMakeFiles/toppic_autogen.dir/build.make CMakeFiles/toppic_autogen.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/CMakeFiles/toppic_autogen.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' AutoGen: Parsing "SRC:/src/common/base/activation.hpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" AutoGen: Parsing "SRC:/src/common/base/ion.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" AutoGen: Parsing "SRC:/src/common/base/mod.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" [ 0%] Built target topindex_autogen AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" AutoGen: Parsing "SRC:/src/common/base/residue.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" AutoGen: Parsing "SRC:/src/common/util/logger.hpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" AutoGen: Parsing "SRC:/src/console/topindex_argument.hpp" AutoGen: Parsing "SRC:/src/console/topindex_process.hpp" AutoGen: Parsing "SRC:/src/filter/index/diag_index.hpp" AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.hpp" AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.hpp" AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.hpp" AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.hpp" AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.hpp" AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.hpp" AutoGen: Parsing "SRC:/src/gui/topindex/threadtopindex.h" AutoGen: Parsing "SRC:/src/gui/topindex/topindexdialog.h" AutoGen: Parsing "SRC:/src/gui/util/run_exe.h" AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" AutoGen: Parsing "SRC:/src/para/sp_para.hpp" AutoGen: Parsing "SRC:/src/seq/alter.hpp" AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" AutoGen: Parsing "SRC:/src/seq/break_point.hpp" AutoGen: Parsing "SRC:/src/seq/db_block.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" AutoGen: Parsing "SRC:/src/common/base/activation.cpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" AutoGen: Parsing "SRC:/src/common/base/ion.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" AutoGen: Parsing "SRC:/src/common/base/mod.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" AutoGen: Parsing "SRC:/src/common/base/residue.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" AutoGen: Parsing "SRC:/src/common/util/logger.cpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" AutoGen: Parsing "SRC:/src/console/topindex_argument.cpp" AutoGen: Parsing "SRC:/src/console/topindex_process.cpp" AutoGen: Parsing "SRC:/src/filter/index/diag_index.cpp" AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.cpp" AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.cpp" AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.cpp" AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.cpp" AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.cpp" AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.cpp" AutoGen: Parsing "SRC:/src/gui/topindex/threadtopindex.cpp" AutoGen: Parsing "SRC:/src/gui/topindex/topindex_gui.cpp" AutoGen: Parsing "SRC:/src/gui/topindex/topindexdialog.cpp" AutoGen: Parsing "SRC:/src/gui/util/run_exe.cpp" make -f CMakeFiles/toppic_gui_autogen.dir/build.make CMakeFiles/toppic_gui_autogen.dir/depend AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" AutoGen: Parsing "SRC:/src/para/sp_para.cpp" AutoGen: Parsing "SRC:/src/seq/alter.cpp" AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" AutoGen: Parsing "SRC:/src/seq/break_point.cpp" AutoGen: Parsing "SRC:/src/seq/db_block.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topindex_gui_autogen/PJRF6ORA5X/moc_threadtopindex.cpp", because it doesn't exist, from "SRC:/src/gui/topindex/threadtopindex.h" /usr/lib/qt5/bin/moc -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --include /<>/obj-x86_64-linux-gnu/topindex_gui_autogen/moc_predefs.h --output-dep-file -o /<>/obj-x86_64-linux-gnu/topindex_gui_autogen/PJRF6ORA5X/moc_threadtopindex.cpp /<>/src/gui/topindex/threadtopindex.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topindex_gui_autogen/PJRF6ORA5X/moc_topindexdialog.cpp", because it doesn't exist, from "SRC:/src/gui/topindex/topindexdialog.h" /usr/lib/qt5/bin/moc -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --include /<>/obj-x86_64-linux-gnu/topindex_gui_autogen/moc_predefs.h --output-dep-file -o /<>/obj-x86_64-linux-gnu/topindex_gui_autogen/PJRF6ORA5X/moc_topindexdialog.cpp /<>/src/gui/topindex/topindexdialog.h AutoUic: Generating "SRC:/obj-x86_64-linux-gnu/topindex_gui_autogen/include/gui/topindex/ui_topindexdialog.h", because it doesn't exist, from "SRC:/src/gui/topindex/topindexdialog.ui" /usr/lib/qt5/bin/uic -o /<>/obj-x86_64-linux-gnu/topindex_gui_autogen/include/gui/topindex/ui_topindexdialog.h /<>/src/gui/topindex/topindexdialog.ui make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f CMakeFiles/toppic_autogen.dir/build.make CMakeFiles/toppic_autogen.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/CMakeFiles/toppic_gui_autogen.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f CMakeFiles/toppic_gui_autogen.dir/build.make CMakeFiles/toppic_gui_autogen.dir/build [ 0%] Automatic MOC and UIC for target toppic /usr/bin/cmake -E cmake_autogen /<>/obj-x86_64-linux-gnu/CMakeFiles/toppic_autogen.dir/AutogenInfo.json release make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/toppic_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -dM -E -c /usr/share/cmake-3.28/Modules/CMakeCXXCompilerABI.cpp -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu [ 1%] Automatic MOC and UIC for target toppic_gui /usr/bin/cmake -E cmake_autogen /<>/obj-x86_64-linux-gnu/CMakeFiles/toppic_gui_autogen.dir/AutogenInfo.json release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/toppic_gui_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -dM -E -c /usr/share/cmake-3.28/Modules/CMakeCXXCompilerABI.cpp -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/topfd_gui_autogen/HZKSH7CGSX/moc_topfddialog.cpp.d" AutoGen: Parsing "SRC:/src/common/base/activation.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" AutoGen: Parsing "SRC:/src/common/base/ion.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" AutoGen: Parsing "SRC:/src/common/base/mod.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" AutoGen: Parsing "SRC:/src/common/util/logger.hpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" AutoGen: Parsing "SRC:/src/console/toppic_argument.hpp" AutoGen: Parsing "SRC:/src/console/toppic_process.hpp" AutoGen: Parsing "SRC:/src/filter/diag/diag_filter.hpp" AutoGen: Parsing "SRC:/src/filter/diag/diag_filter_processor.hpp" AutoGen: Parsing "SRC:/src/filter/index/diag_index.hpp" AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.hpp" AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.hpp" AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.hpp" AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.hpp" AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.hpp" AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.hpp" AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter.hpp" AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter_processor.hpp" AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter.hpp" AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter_processor.hpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" AutoGen: Parsing "SRC:/src/common/base/residue.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.hpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.hpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.hpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" AutoGen: Parsing "SRC:/src/para/sp_para.hpp" AutoGen: Parsing "SRC:/src/prsm/expected_value.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.hpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.hpp" AutoGen: Parsing "SRC:/src/search/diag/diag_header.hpp" AutoGen: Parsing "SRC:/src/search/diag/diag_header_util.hpp" AutoGen: Parsing "SRC:/src/search/diag/diag_pair_util.hpp" AutoGen: Parsing "SRC:/src/search/diag/diagonal_util.hpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/dp_pair.hpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/one_ptm_search_processor.hpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/one_ptm_slow_match.hpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/path_type.hpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/ps_align.hpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/ptm_search_mng.hpp" AutoGen: Parsing "SRC:/src/search/ptmsearch/comp_shift_low_mem.hpp" AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_search_processor.hpp" AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_search_slow_filter.hpp" AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_slow_match.hpp" AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_fast_match.hpp" AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_fast_search.hpp" AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_search_processor.hpp" AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_util.hpp" AutoGen: Parsing "SRC:/src/seq/alter.hpp" AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" AutoGen: Parsing "SRC:/src/seq/break_point.hpp" AutoGen: Parsing "SRC:/src/seq/db_block.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" AutoGen: Parsing "SRC:/src/stat/count/count_test_num.hpp" AutoGen: Parsing "SRC:/src/stat/count/count_util.hpp" AutoGen: Parsing "SRC:/src/stat/local/local_mng.hpp" AutoGen: Parsing "SRC:/src/stat/local/local_processor.hpp" AutoGen: Parsing "SRC:/src/stat/local/local_proteoform.hpp" AutoGen: Parsing "SRC:/src/stat/local/local_util.hpp" AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value.hpp" AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value_array.hpp" AutoGen: Parsing "SRC:/src/stat/tdgf/comp_pvalue_array.hpp" AutoGen: Parsing "SRC:/src/stat/tdgf/comp_pvalue_lookup_table.hpp" AutoGen: Parsing "SRC:/src/stat/tdgf/evalue_processor.hpp" AutoGen: Parsing "SRC:/src/stat/tdgf/prob_peak.hpp" AutoGen: Parsing "SRC:/src/stat/tdgf/tdgf_mng.hpp" AutoGen: Parsing "SRC:/src/visual/anno_cleavage.hpp" AutoGen: Parsing "SRC:/src/visual/anno_file_list.hpp" AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.hpp" AutoGen: Parsing "SRC:/src/visual/anno_proteoform.hpp" AutoGen: Parsing "SRC:/src/visual/anno_prsm.hpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm.hpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.hpp" AutoGen: Parsing "SRC:/src/visual/anno_residue.hpp" AutoGen: Parsing "SRC:/src/visual/anno_xml_util.hpp" AutoGen: Parsing "SRC:/src/visual/json_transformer.hpp" AutoGen: Parsing "SRC:/src/visual/xml_generator.hpp" AutoGen: Parsing "SRC:/src/common/base/activation.cpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" AutoGen: Parsing "SRC:/src/common/base/ion.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" AutoGen: Parsing "SRC:/src/common/base/mod.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" AutoGen: Parsing "SRC:/src/common/base/residue.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" AutoGen: Parsing "SRC:/src/common/util/logger.cpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" AutoGen: Parsing "SRC:/src/console/toppic.cpp" AutoGen: Parsing "SRC:/src/console/toppic_argument.cpp" AutoGen: Parsing "SRC:/src/console/toppic_process.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" AutoGen: Parsing "SRC:/src/filter/diag/diag_filter.cpp" AutoGen: Parsing "SRC:/src/filter/diag/diag_filter_processor.cpp" AutoGen: Parsing "SRC:/src/filter/index/diag_index.cpp" AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.cpp" AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.cpp" AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.cpp" AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.cpp" AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.cpp" AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.cpp" AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter.cpp" AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter_processor.cpp" AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter.cpp" AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter_processor.cpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" AutoGen: Parsing "SRC:/src/para/sp_para.cpp" AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp" AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.cpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.cpp" AutoGen: Parsing "SRC:/src/search/diag/diag_header.cpp" AutoGen: Parsing "SRC:/src/search/diag/diag_header_util.cpp" AutoGen: Parsing "SRC:/src/search/diag/diag_pair_util.cpp" AutoGen: Parsing "SRC:/src/search/diag/diagonal_util.cpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/dp_pair.cpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/one_ptm_search_processor.cpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/one_ptm_slow_match.cpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/path_type.cpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/ps_align.cpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/ptm_search_mng.cpp" AutoGen: Parsing "SRC:/src/search/ptmsearch/comp_shift_low_mem.cpp" AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_search_processor.cpp" AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_search_slow_filter.cpp" AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_slow_match.cpp" AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_fast_match.cpp" AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_fast_search.cpp" AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_search_processor.cpp" AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_util.cpp" AutoGen: Parsing "SRC:/src/seq/alter.cpp" AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" AutoGen: Parsing "SRC:/src/seq/break_point.cpp" AutoGen: Parsing "SRC:/src/seq/db_block.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" AutoGen: Parsing "SRC:/src/stat/count/count_test_num.cpp" AutoGen: Parsing "SRC:/src/stat/count/count_util.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_mng.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_processor.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_proteoform.cpp" AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value.cpp" AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value_array.cpp" AutoGen: Parsing "SRC:/src/stat/tdgf/comp_pvalue_array.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" AutoGen: Parsing "SRC:/src/stat/tdgf/comp_pvalue_lookup_table.cpp" AutoGen: Parsing "SRC:/src/stat/tdgf/evalue_processor.cpp" AutoGen: Parsing "SRC:/src/stat/tdgf/prob_peak.cpp" AutoGen: Parsing "SRC:/src/stat/tdgf/tdgf_mng.cpp" AutoGen: Parsing "SRC:/src/visual/anno_cleavage.cpp" AutoGen: Parsing "SRC:/src/visual/anno_file_list.cpp" AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.cpp" AutoGen: Parsing "SRC:/src/visual/anno_proteoform.cpp" AutoGen: Parsing "SRC:/src/visual/anno_prsm.cpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm.cpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.cpp" AutoGen: Parsing "SRC:/src/visual/anno_residue.cpp" AutoGen: Parsing "SRC:/src/visual/anno_xml_util.cpp" AutoGen: Parsing "SRC:/src/visual/json_transformer.cpp" AutoGen: Parsing "SRC:/src/visual/xml_generator.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_util.cpp" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/toppic_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/toppic_autogen/deps" AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/toppic_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/toppic_autogen.dir/AutogenUsed.txt" /usr/bin/cmake -E touch /<>/obj-x86_64-linux-gnu/toppic_autogen/timestamp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' AutoGen: Parsing "SRC:/src/common/base/activation.hpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" AutoGen: Parsing "SRC:/src/common/base/ion.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" AutoGen: Parsing "SRC:/src/common/base/mod.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" AutoGen: Parsing "SRC:/src/common/base/residue.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" AutoGen: Parsing "SRC:/src/common/util/logger.hpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" AutoGen: Parsing "SRC:/src/console/toppic_argument.hpp" AutoGen: Parsing "SRC:/src/console/toppic_process.hpp" AutoGen: Parsing "SRC:/src/filter/diag/diag_filter.hpp" AutoGen: Parsing "SRC:/src/filter/diag/diag_filter_processor.hpp" AutoGen: Parsing "SRC:/src/filter/index/diag_index.hpp" AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.hpp" AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.hpp" AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.hpp" AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.hpp" AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.hpp" AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.hpp" AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter.hpp" AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter_processor.hpp" AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter.hpp" AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter_processor.hpp" AutoGen: Parsing "SRC:/src/gui/toppic/threadtoppic.h" AutoGen: Parsing "SRC:/src/gui/toppic/toppicwindow.h" AutoGen: Parsing "SRC:/src/gui/util/run_exe.h" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.hpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.hpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.hpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" AutoGen: Parsing "SRC:/src/para/sp_para.hpp" AutoGen: Parsing "SRC:/src/prsm/expected_value.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.hpp" AutoGen: Parsing "SRC:/src/search/diag/diag_header.hpp" AutoGen: Parsing "SRC:/src/search/diag/diag_header_util.hpp" AutoGen: Parsing "SRC:/src/search/diag/diag_pair_util.hpp" AutoGen: Parsing "SRC:/src/search/diag/diagonal_util.hpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/dp_pair.hpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/one_ptm_search_processor.hpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/one_ptm_slow_match.hpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/path_type.hpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/ps_align.hpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/ptm_search_mng.hpp" AutoGen: Parsing "SRC:/src/search/ptmsearch/comp_shift_low_mem.hpp" AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_search_processor.hpp" AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_search_slow_filter.hpp" AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_slow_match.hpp" AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_fast_match.hpp" AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_fast_search.hpp" AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_search_processor.hpp" AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_util.hpp" AutoGen: Parsing "SRC:/src/seq/alter.hpp" AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" AutoGen: Parsing "SRC:/src/seq/break_point.hpp" AutoGen: Parsing "SRC:/src/seq/db_block.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" AutoGen: Parsing "SRC:/src/stat/count/count_test_num.hpp" AutoGen: Parsing "SRC:/src/stat/count/count_util.hpp" AutoGen: Parsing "SRC:/src/stat/local/local_mng.hpp" AutoGen: Parsing "SRC:/src/stat/local/local_processor.hpp" AutoGen: Parsing "SRC:/src/stat/local/local_proteoform.hpp" AutoGen: Parsing "SRC:/src/stat/local/local_util.hpp" AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value.hpp" AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value_array.hpp" AutoGen: Parsing "SRC:/src/stat/tdgf/comp_pvalue_array.hpp" AutoGen: Parsing "SRC:/src/stat/tdgf/comp_pvalue_lookup_table.hpp" AutoGen: Parsing "SRC:/src/stat/tdgf/evalue_processor.hpp" AutoGen: Parsing "SRC:/src/stat/tdgf/prob_peak.hpp" AutoGen: Parsing "SRC:/src/stat/tdgf/tdgf_mng.hpp" AutoGen: Parsing "SRC:/src/visual/anno_cleavage.hpp" AutoGen: Parsing "SRC:/src/visual/anno_file_list.hpp" AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.hpp" AutoGen: Parsing "SRC:/src/visual/anno_proteoform.hpp" AutoGen: Parsing "SRC:/src/visual/anno_prsm.hpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm.hpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.hpp" AutoGen: Parsing "SRC:/src/visual/anno_residue.hpp" AutoGen: Parsing "SRC:/src/visual/anno_xml_util.hpp" AutoGen: Parsing "SRC:/src/visual/json_transformer.hpp" AutoGen: Parsing "SRC:/src/visual/xml_generator.hpp" AutoGen: Parsing "SRC:/src/common/base/activation.cpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" AutoGen: Parsing "SRC:/src/common/base/ion.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" AutoGen: Parsing "SRC:/src/common/base/mod.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" AutoGen: Parsing "SRC:/src/common/base/residue.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" AutoGen: Parsing "SRC:/src/common/util/logger.cpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" AutoGen: Parsing "SRC:/src/console/toppic_argument.cpp" AutoGen: Parsing "SRC:/src/console/toppic_process.cpp" AutoGen: Parsing "SRC:/src/filter/diag/diag_filter.cpp" AutoGen: Parsing "SRC:/src/filter/diag/diag_filter_processor.cpp" AutoGen: Parsing "SRC:/src/filter/index/diag_index.cpp" AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.cpp" AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.cpp" AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.cpp" AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.cpp" AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.cpp" AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.cpp" AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter.cpp" AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter_processor.cpp" AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter.cpp" AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter_processor.cpp" AutoGen: Parsing "SRC:/src/gui/toppic/threadtoppic.cpp" AutoGen: Parsing "SRC:/src/gui/toppic/toppic_gui.cpp" AutoGen: Parsing "SRC:/src/gui/toppic/toppicwindow.cpp" AutoGen: Parsing "SRC:/src/gui/util/run_exe.cpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" AutoGen: Parsing "SRC:/src/para/sp_para.cpp" AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.cpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.cpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.cpp" AutoGen: Parsing "SRC:/src/search/diag/diag_header.cpp" AutoGen: Parsing "SRC:/src/search/diag/diag_header_util.cpp" AutoGen: Parsing "SRC:/src/search/diag/diag_pair_util.cpp" AutoGen: Parsing "SRC:/src/search/diag/diagonal_util.cpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/dp_pair.cpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/one_ptm_search_processor.cpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/one_ptm_slow_match.cpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/path_type.cpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/ps_align.cpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/ptm_search_mng.cpp" AutoGen: Parsing "SRC:/src/search/ptmsearch/comp_shift_low_mem.cpp" AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_search_processor.cpp" AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_search_slow_filter.cpp" AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_slow_match.cpp" AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_fast_match.cpp" AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_fast_search.cpp" AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_search_processor.cpp" AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_util.cpp" AutoGen: Parsing "SRC:/src/seq/alter.cpp" AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" AutoGen: Parsing "SRC:/src/seq/break_point.cpp" AutoGen: Parsing "SRC:/src/seq/db_block.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" AutoGen: Parsing "SRC:/src/stat/count/count_test_num.cpp" AutoGen: Parsing "SRC:/src/stat/count/count_util.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_mng.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_processor.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_proteoform.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_util.cpp" AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value.cpp" AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value_array.cpp" AutoGen: Parsing "SRC:/src/stat/tdgf/comp_pvalue_array.cpp" AutoGen: Parsing "SRC:/src/stat/tdgf/comp_pvalue_lookup_table.cpp" AutoGen: Parsing "SRC:/src/stat/tdgf/evalue_processor.cpp" AutoGen: Parsing "SRC:/src/stat/tdgf/prob_peak.cpp" AutoGen: Parsing "SRC:/src/stat/tdgf/tdgf_mng.cpp" AutoGen: Parsing "SRC:/src/visual/anno_cleavage.cpp" AutoGen: Parsing "SRC:/src/visual/anno_file_list.cpp" AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.cpp" AutoGen: Parsing "SRC:/src/visual/anno_proteoform.cpp" AutoGen: Parsing "SRC:/src/visual/anno_prsm.cpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm.cpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.cpp" AutoGen: Parsing "SRC:/src/visual/anno_residue.cpp" AutoGen: Parsing "SRC:/src/visual/anno_xml_util.cpp" AutoGen: Parsing "SRC:/src/visual/json_transformer.cpp" AutoGen: Parsing "SRC:/src/visual/xml_generator.cpp" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/toppic_gui_autogen/23BTPJIYMA/moc_threadtoppic.cpp", because it doesn't exist, from "SRC:/src/gui/toppic/threadtoppic.h" /usr/lib/qt5/bin/moc -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --include /<>/obj-x86_64-linux-gnu/toppic_gui_autogen/moc_predefs.h --output-dep-file -o /<>/obj-x86_64-linux-gnu/toppic_gui_autogen/23BTPJIYMA/moc_threadtoppic.cpp /<>/src/gui/toppic/threadtoppic.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/toppic_gui_autogen/23BTPJIYMA/moc_toppicwindow.cpp", because it doesn't exist, from "SRC:/src/gui/toppic/toppicwindow.h" /usr/lib/qt5/bin/moc -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --include /<>/obj-x86_64-linux-gnu/toppic_gui_autogen/moc_predefs.h --output-dep-file -o /<>/obj-x86_64-linux-gnu/toppic_gui_autogen/23BTPJIYMA/moc_toppicwindow.cpp /<>/src/gui/toppic/toppicwindow.h AutoUic: Generating "SRC:/obj-x86_64-linux-gnu/toppic_gui_autogen/include/ui_toppicwindow.h", because it doesn't exist, from "SRC:/src/gui/toppic/toppicwindow.ui" /usr/lib/qt5/bin/uic -o /<>/obj-x86_64-linux-gnu/toppic_gui_autogen/include/ui_toppicwindow.h /<>/src/gui/toppic/toppicwindow.ui AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/topfd_gui_autogen/HZKSH7CGSX/moc_threadtopfd.cpp.d" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/topfd_gui_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/topfd_gui_autogen/deps" AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topfd_gui_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topfd_gui_autogen.dir/AutogenUsed.txt" /usr/bin/cmake -E touch /<>/obj-x86_64-linux-gnu/topfd_gui_autogen/timestamp AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/topindex_gui_autogen/PJRF6ORA5X/moc_threadtopindex.cpp.d" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/topindex_gui_autogen/PJRF6ORA5X/moc_topindexdialog.cpp.d" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/topindex_gui_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/topindex_gui_autogen/deps" [ 1%] Built target toppic_autogen AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topindex_gui_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topindex_gui_autogen.dir/AutogenUsed.txt" make -f CMakeFiles/topmg_autogen.dir/build.make CMakeFiles/topmg_autogen.dir/depend /usr/bin/cmake -E touch /<>/obj-x86_64-linux-gnu/topindex_gui_autogen/timestamp make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/CMakeFiles/topmg_autogen.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 1%] Built target topindex_gui_autogen make -f CMakeFiles/topmg_gui_autogen.dir/build.make CMakeFiles/topmg_gui_autogen.dir/depend [ 1%] Built target topfd_gui_autogen make -f CMakeFiles/topdiff_autogen.dir/build.make CMakeFiles/topdiff_autogen.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/CMakeFiles/topmg_gui_autogen.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/CMakeFiles/topdiff_autogen.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f CMakeFiles/topmg_autogen.dir/build.make CMakeFiles/topmg_autogen.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f CMakeFiles/topmg_gui_autogen.dir/build.make CMakeFiles/topmg_gui_autogen.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f CMakeFiles/topdiff_autogen.dir/build.make CMakeFiles/topdiff_autogen.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 1%] Automatic MOC and UIC for target topmg_gui /usr/bin/cmake -E cmake_autogen /<>/obj-x86_64-linux-gnu/CMakeFiles/topmg_gui_autogen.dir/AutogenInfo.json release [ 1%] Automatic MOC and UIC for target topmg /usr/bin/cmake -E cmake_autogen /<>/obj-x86_64-linux-gnu/CMakeFiles/topmg_autogen.dir/AutogenInfo.json release AutoGen: Refreshing parse cache because it doesn't exist. AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topmg_gui_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -dM -E -c /usr/share/cmake-3.28/Modules/CMakeCXXCompilerABI.cpp -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topmg_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -dM -E -c /usr/share/cmake-3.28/Modules/CMakeCXXCompilerABI.cpp -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu [ 1%] Automatic MOC and UIC for target topdiff /usr/bin/cmake -E cmake_autogen /<>/obj-x86_64-linux-gnu/CMakeFiles/topdiff_autogen.dir/AutogenInfo.json release AutoGen: Parsing "SRC:/src/common/base/activation.hpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" AutoGen: Parsing "SRC:/src/common/base/ion.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" AutoGen: Parsing "SRC:/src/common/base/mod.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" AutoGen: Parsing "SRC:/src/common/base/residue.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" AutoGen: Parsing "SRC:/src/common/util/logger.hpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" AutoGen: Parsing "SRC:/src/console/topmg_argument.hpp" AutoGen: Parsing "SRC:/src/filter/diag/diag_filter.hpp" AutoGen: Parsing "SRC:/src/filter/diag/diag_filter_processor.hpp" AutoGen: Parsing "SRC:/src/filter/index/diag_index.hpp" AutoGen: Parsing "SRC:/src/console/topmg_process.hpp" AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.hpp" AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.hpp" AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.hpp" AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.hpp" AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.hpp" AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter.hpp" AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter_processor.hpp" AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter.hpp" AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter_processor.hpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.hpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" AutoGen: Refreshing parse cache because it doesn't exist. AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.hpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.hpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.hpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" AutoGen: Parsing "SRC:/src/para/sp_para.hpp" AutoGen: Parsing "SRC:/src/prsm/expected_value.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.hpp" AutoGen: Parsing "SRC:/src/search/diag/diag_header.hpp" AutoGen: Parsing "SRC:/src/search/diag/diag_header_util.hpp" AutoGen: Parsing "SRC:/src/search/diag/diag_pair_util.hpp" AutoGen: Parsing "SRC:/src/search/diag/diagonal_util.hpp" AutoGen: Parsing "SRC:/src/search/graph/dist.hpp" AutoGen: Parsing "SRC:/src/search/graph/proteo_anno.hpp" AutoGen: Parsing "SRC:/src/search/graph/proteo_graph.hpp" AutoGen: Parsing "SRC:/src/search/graph/proteo_graph_reader.hpp" AutoGen: Parsing "SRC:/src/search/graph/spec_graph.hpp" AutoGen: Parsing "SRC:/src/search/graph/spec_graph_reader.hpp" AutoGen: Parsing "SRC:/src/search/graphalign/graph_align.hpp" AutoGen: Parsing "SRC:/src/search/graphalign/graph_align_processor.hpp" AutoGen: Parsing "SRC:/src/search/graphalign/graph_dp_node.hpp" AutoGen: Parsing "SRC:/src/search/graphalign/graph_post_processor.hpp" AutoGen: Parsing "SRC:/src/seq/alter.hpp" AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" AutoGen: Parsing "SRC:/src/seq/break_point.hpp" AutoGen: Parsing "SRC:/src/seq/db_block.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" AutoGen: Parsing "SRC:/src/stat/count/count_test_num.hpp" AutoGen: Parsing "SRC:/src/stat/count/count_util.hpp" AutoGen: Parsing "SRC:/src/stat/mcmc/comp_pvalue_mcmc.hpp" AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_dpr_processor.hpp" AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_mass_table_util.hpp" AutoGen: Parsing "SRC:/src/visual/anno_cleavage.hpp" AutoGen: Parsing "SRC:/src/visual/anno_file_list.hpp" AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.hpp" AutoGen: Parsing "SRC:/src/visual/anno_proteoform.hpp" AutoGen: Parsing "SRC:/src/visual/anno_prsm.hpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm.hpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.hpp" AutoGen: Parsing "SRC:/src/visual/anno_residue.hpp" AutoGen: Parsing "SRC:/src/visual/anno_xml_util.hpp" AutoGen: Parsing "SRC:/src/visual/json_transformer.hpp" AutoGen: Parsing "SRC:/src/visual/xml_generator.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" AutoGen: Parsing "SRC:/src/common/base/ion.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" AutoGen: Parsing "SRC:/src/common/base/mod.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" AutoGen: Parsing "SRC:/src/common/base/residue.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" AutoGen: Parsing "SRC:/src/common/util/logger.cpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" AutoGen: Parsing "SRC:/src/console/topmg.cpp" AutoGen: Parsing "SRC:/src/console/topmg_argument.cpp" AutoGen: Parsing "SRC:/src/console/topmg_process.cpp" AutoGen: Parsing "SRC:/src/filter/diag/diag_filter.cpp" AutoGen: Parsing "SRC:/src/filter/diag/diag_filter_processor.cpp" AutoGen: Parsing "SRC:/src/filter/index/diag_index.cpp" AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.cpp" AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.cpp" AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.cpp" AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.cpp" AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.cpp" AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.cpp" AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter.cpp" AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter_processor.cpp" AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter.cpp" AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter_processor.cpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topdiff_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -dM -E -c /usr/share/cmake-3.28/Modules/CMakeCXXCompilerABI.cpp -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" AutoGen: Parsing "SRC:/src/common/base/activation.cpp" AutoGen: Parsing "SRC:/src/common/base/activation.hpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" AutoGen: Parsing "SRC:/src/common/base/ion.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" AutoGen: Parsing "SRC:/src/common/base/mod.hpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" AutoGen: Parsing "SRC:/src/common/base/residue.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" AutoGen: Parsing "SRC:/src/common/util/logger.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" AutoGen: Parsing "SRC:/src/console/topmg_argument.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" AutoGen: Parsing "SRC:/src/console/topmg_process.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" AutoGen: Parsing "SRC:/src/filter/diag/diag_filter.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" AutoGen: Parsing "SRC:/src/filter/diag/diag_filter_processor.hpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" AutoGen: Parsing "SRC:/src/filter/index/diag_index.hpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.hpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.hpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" AutoGen: Parsing "SRC:/src/para/sp_para.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.hpp" AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp" AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm.cpp" AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.hpp" AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp" AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.hpp" AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp" AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter_processor.hpp" AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter_processor.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" AutoGen: Parsing "SRC:/src/gui/topmg/threadtopmg.h" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp" AutoGen: Parsing "SRC:/src/gui/topmg/topmgwindow.h" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp" AutoGen: Parsing "SRC:/src/gui/util/run_exe.h" AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.cpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.cpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" AutoGen: Parsing "SRC:/src/search/diag/diag_header.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" AutoGen: Parsing "SRC:/src/search/diag/diag_header_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" AutoGen: Parsing "SRC:/src/search/diag/diag_pair_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" AutoGen: Parsing "SRC:/src/search/diag/diagonal_util.cpp" AutoGen: Parsing "SRC:/src/search/graph/dist.cpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" AutoGen: Parsing "SRC:/src/search/graph/proteo_anno.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" AutoGen: Parsing "SRC:/src/search/graph/proteo_graph.cpp" AutoGen: Parsing "SRC:/src/search/graph/proteo_graph_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" AutoGen: Parsing "SRC:/src/search/graph/spec_graph.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" AutoGen: Parsing "SRC:/src/search/graph/spec_graph_reader.cpp" AutoGen: Parsing "SRC:/src/search/graphalign/graph_align.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.hpp" AutoGen: Parsing "SRC:/src/search/graphalign/graph_align_processor.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.hpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" AutoGen: Parsing "SRC:/src/search/graphalign/graph_dp_node.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" AutoGen: Parsing "SRC:/src/search/graphalign/graph_post_processor.cpp" AutoGen: Parsing "SRC:/src/seq/alter.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" AutoGen: Parsing "SRC:/src/seq/break_point.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" AutoGen: Parsing "SRC:/src/seq/db_block.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.hpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.hpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" AutoGen: Parsing "SRC:/src/stat/count/count_test_num.cpp" AutoGen: Parsing "SRC:/src/stat/count/count_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" AutoGen: Parsing "SRC:/src/stat/mcmc/comp_pvalue_mcmc.cpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_dpr_processor.cpp" AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" AutoGen: Parsing "SRC:/src/para/sp_para.hpp" AutoGen: Parsing "SRC:/src/prsm/expected_value.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.hpp" AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_mass_table_util.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm.hpp" AutoGen: Parsing "SRC:/src/visual/anno_file_list.cpp" AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.hpp" AutoGen: Parsing "SRC:/src/visual/anno_proteoform.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.hpp" AutoGen: Parsing "SRC:/src/visual/anno_prsm.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.hpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm.cpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/visual/anno_residue.cpp" AutoGen: Parsing "SRC:/src/visual/anno_xml_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.hpp" AutoGen: Parsing "SRC:/src/visual/json_transformer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.hpp" AutoGen: Parsing "SRC:/src/visual/xml_generator.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.hpp" AutoGen: Parsing "SRC:/src/visual/anno_cleavage.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.hpp" AutoGen: Parsing "SRC:/src/search/diag/diag_header.hpp" AutoGen: Parsing "SRC:/src/search/diag/diag_header_util.hpp" AutoGen: Parsing "SRC:/src/search/diag/diag_pair_util.hpp" AutoGen: Parsing "SRC:/src/search/diag/diagonal_util.hpp" AutoGen: Parsing "SRC:/src/search/graph/dist.hpp" AutoGen: Parsing "SRC:/src/search/graph/proteo_anno.hpp" AutoGen: Parsing "SRC:/src/search/graph/proteo_graph.hpp" AutoGen: Parsing "SRC:/src/search/graph/proteo_graph_reader.hpp" AutoGen: Parsing "SRC:/src/search/graph/spec_graph.hpp" AutoGen: Parsing "SRC:/src/search/graph/spec_graph_reader.hpp" AutoGen: Parsing "SRC:/src/search/graphalign/graph_align.hpp" AutoGen: Parsing "SRC:/src/search/graphalign/graph_align_processor.hpp" AutoGen: Parsing "SRC:/src/search/graphalign/graph_dp_node.hpp" AutoGen: Parsing "SRC:/src/search/graphalign/graph_post_processor.hpp" AutoGen: Parsing "SRC:/src/seq/alter.hpp" AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" AutoGen: Parsing "SRC:/src/seq/break_point.hpp" AutoGen: Parsing "SRC:/src/seq/db_block.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" AutoGen: Parsing "SRC:/src/stat/count/count_test_num.hpp" AutoGen: Parsing "SRC:/src/stat/count/count_util.hpp" AutoGen: Parsing "SRC:/src/stat/mcmc/comp_pvalue_mcmc.hpp" AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_dpr_processor.hpp" AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_mass_table_util.hpp" AutoGen: Parsing "SRC:/src/visual/anno_cleavage.hpp" AutoGen: Parsing "SRC:/src/visual/anno_file_list.hpp" AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.hpp" AutoGen: Parsing "SRC:/src/visual/anno_proteoform.hpp" AutoGen: Parsing "SRC:/src/visual/anno_prsm.hpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm.hpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.hpp" AutoGen: Parsing "SRC:/src/visual/anno_residue.hpp" AutoGen: Parsing "SRC:/src/visual/anno_xml_util.hpp" AutoGen: Parsing "SRC:/src/visual/json_transformer.hpp" AutoGen: Parsing "SRC:/src/visual/xml_generator.hpp" AutoGen: Parsing "SRC:/src/common/base/activation.cpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" AutoGen: Parsing "SRC:/src/common/base/ion.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" AutoGen: Parsing "SRC:/src/common/base/mod.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" AutoGen: Parsing "SRC:/src/common/base/residue.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" AutoGen: Parsing "SRC:/src/common/util/logger.cpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" AutoGen: Parsing "SRC:/src/console/topmg_argument.cpp" AutoGen: Parsing "SRC:/src/console/topmg_process.cpp" AutoGen: Parsing "SRC:/src/filter/diag/diag_filter.cpp" AutoGen: Parsing "SRC:/src/filter/diag/diag_filter_processor.cpp" AutoGen: Parsing "SRC:/src/filter/index/diag_index.cpp" AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.cpp" AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.cpp" AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.cpp" AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.cpp" AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.cpp" AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.cpp" AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter.cpp" AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter_processor.cpp" AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter.cpp" AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter_processor.cpp" AutoGen: Parsing "SRC:/src/gui/topmg/threadtopmg.cpp" AutoGen: Parsing "SRC:/src/gui/topmg/topmg_gui.cpp" AutoGen: Parsing "SRC:/src/gui/topmg/topmgwindow.cpp" AutoGen: Parsing "SRC:/src/gui/util/run_exe.cpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" AutoGen: Parsing "SRC:/src/para/sp_para.cpp" AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.cpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.cpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.cpp" AutoGen: Parsing "SRC:/src/search/diag/diag_header.cpp" AutoGen: Parsing "SRC:/src/search/diag/diag_header_util.cpp" AutoGen: Parsing "SRC:/src/search/diag/diag_pair_util.cpp" AutoGen: Parsing "SRC:/src/search/diag/diagonal_util.cpp" AutoGen: Parsing "SRC:/src/search/graph/dist.cpp" AutoGen: Parsing "SRC:/src/search/graph/proteo_anno.cpp" AutoGen: Parsing "SRC:/src/search/graph/proteo_graph.cpp" AutoGen: Parsing "SRC:/src/search/graph/proteo_graph_reader.cpp" AutoGen: Parsing "SRC:/src/search/graph/spec_graph.cpp" AutoGen: Parsing "SRC:/src/search/graph/spec_graph_reader.cpp" AutoGen: Parsing "SRC:/src/search/graphalign/graph_align.cpp" AutoGen: Parsing "SRC:/src/search/graphalign/graph_align_processor.cpp" AutoGen: Parsing "SRC:/src/search/graphalign/graph_dp_node.cpp" AutoGen: Parsing "SRC:/src/search/graphalign/graph_post_processor.cpp" AutoGen: Parsing "SRC:/src/seq/alter.cpp" AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" AutoGen: Parsing "SRC:/src/seq/break_point.cpp" AutoGen: Parsing "SRC:/src/seq/db_block.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" AutoGen: Parsing "SRC:/src/stat/count/count_test_num.cpp" AutoGen: Parsing "SRC:/src/stat/count/count_util.cpp" AutoGen: Parsing "SRC:/src/stat/mcmc/comp_pvalue_mcmc.cpp" AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_dpr_processor.cpp" AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_mass_table_util.cpp" AutoGen: Parsing "SRC:/src/visual/anno_cleavage.cpp" AutoGen: Parsing "SRC:/src/visual/anno_file_list.cpp" AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.cpp" AutoGen: Parsing "SRC:/src/visual/anno_proteoform.cpp" AutoGen: Parsing "SRC:/src/visual/anno_prsm.cpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm.cpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.cpp" AutoGen: Parsing "SRC:/src/visual/anno_residue.cpp" AutoGen: Parsing "SRC:/src/visual/anno_xml_util.cpp" AutoGen: Parsing "SRC:/src/visual/json_transformer.cpp" AutoGen: Parsing "SRC:/src/visual/xml_generator.cpp" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/topmg_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/topmg_autogen/deps" AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topmg_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topmg_autogen.dir/AutogenUsed.txt" /usr/bin/cmake -E touch /<>/obj-x86_64-linux-gnu/topmg_autogen/timestamp AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topmg_gui_autogen/OBJ2MOUSMQ/moc_threadtopmg.cpp", because it doesn't exist, from "SRC:/src/gui/topmg/threadtopmg.h" /usr/lib/qt5/bin/moc -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --include /<>/obj-x86_64-linux-gnu/topmg_gui_autogen/moc_predefs.h --output-dep-file -o /<>/obj-x86_64-linux-gnu/topmg_gui_autogen/OBJ2MOUSMQ/moc_threadtopmg.cpp /<>/src/gui/topmg/threadtopmg.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topmg_gui_autogen/OBJ2MOUSMQ/moc_topmgwindow.cpp", because it doesn't exist, from "SRC:/src/gui/topmg/topmgwindow.h" /usr/lib/qt5/bin/moc -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --include /<>/obj-x86_64-linux-gnu/topmg_gui_autogen/moc_predefs.h --output-dep-file -o /<>/obj-x86_64-linux-gnu/topmg_gui_autogen/OBJ2MOUSMQ/moc_topmgwindow.cpp /<>/src/gui/topmg/topmgwindow.h AutoUic: Generating "SRC:/obj-x86_64-linux-gnu/topmg_gui_autogen/include/ui_topmgwindow.h", because it doesn't exist, from "SRC:/src/gui/topmg/topmgwindow.ui" /usr/lib/qt5/bin/uic -o /<>/obj-x86_64-linux-gnu/topmg_gui_autogen/include/ui_topmgwindow.h /<>/src/gui/topmg/topmgwindow.ui make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' AutoGen: Parsing "SRC:/src/common/base/activation.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" AutoGen: Parsing "SRC:/src/common/base/ion.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" AutoGen: Parsing "SRC:/src/common/base/mod.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" AutoGen: Parsing "SRC:/src/common/base/residue.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" AutoGen: Parsing "SRC:/src/common/util/logger.hpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" AutoGen: Parsing "SRC:/src/console/topdiff_argument.hpp" AutoGen: Parsing "SRC:/src/console/topdiff_process.hpp" AutoGen: Parsing "SRC:/src/merge/feature_prsm.hpp" AutoGen: Parsing "SRC:/src/merge/feature_prsm_reader.hpp" AutoGen: Parsing "SRC:/src/merge/feature_sample_merge.hpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.hpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.hpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.hpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" AutoGen: Parsing "SRC:/src/para/sp_para.hpp" AutoGen: Parsing "SRC:/src/prsm/expected_value.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.hpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.hpp" AutoGen: Parsing "SRC:/src/seq/alter.hpp" AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" AutoGen: Parsing "SRC:/src/seq/break_point.hpp" AutoGen: Parsing "SRC:/src/seq/db_block.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" AutoGen: Parsing "SRC:/src/common/base/activation.cpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" AutoGen: Parsing "SRC:/src/common/base/ion.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" AutoGen: Parsing "SRC:/src/common/base/mod.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" AutoGen: Parsing "SRC:/src/common/base/residue.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" AutoGen: Parsing "SRC:/src/common/util/logger.cpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" AutoGen: Parsing "SRC:/src/console/topdiff.cpp" AutoGen: Parsing "SRC:/src/console/topdiff_argument.cpp" AutoGen: Parsing "SRC:/src/console/topdiff_process.cpp" AutoGen: Parsing "SRC:/src/merge/feature_prsm.cpp" AutoGen: Parsing "SRC:/src/merge/feature_prsm_reader.cpp" AutoGen: Parsing "SRC:/src/merge/feature_sample_merge.cpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" AutoGen: Parsing "SRC:/src/para/sp_para.cpp" AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.cpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.cpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.cpp" AutoGen: Parsing "SRC:/src/seq/alter.cpp" AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" AutoGen: Parsing "SRC:/src/seq/break_point.cpp" AutoGen: Parsing "SRC:/src/seq/db_block.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/topdiff_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/topdiff_autogen/deps" AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topdiff_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topdiff_autogen.dir/AutogenUsed.txt" /usr/bin/cmake -E touch /<>/obj-x86_64-linux-gnu/topdiff_autogen/timestamp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 1%] Built target topmg_autogen make -f CMakeFiles/topdiff_gui_autogen.dir/build.make CMakeFiles/topdiff_gui_autogen.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/CMakeFiles/topdiff_gui_autogen.dir/DependInfo.cmake "--color=" [ 1%] Built target topdiff_autogen make -f CMakeFiles/topmerge_autogen.dir/build.make CMakeFiles/topmerge_autogen.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/CMakeFiles/topmerge_autogen.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f CMakeFiles/topdiff_gui_autogen.dir/build.make CMakeFiles/topdiff_gui_autogen.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f CMakeFiles/topmerge_autogen.dir/build.make CMakeFiles/topmerge_autogen.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 1%] Automatic MOC and UIC for target topdiff_gui /usr/bin/cmake -E cmake_autogen /<>/obj-x86_64-linux-gnu/CMakeFiles/topdiff_gui_autogen.dir/AutogenInfo.json release [ 1%] Automatic MOC and UIC for target topmerge /usr/bin/cmake -E cmake_autogen /<>/obj-x86_64-linux-gnu/CMakeFiles/topmerge_autogen.dir/AutogenInfo.json release AutoGen: 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AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topmerge_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -dM -E -c /usr/share/cmake-3.28/Modules/CMakeCXXCompilerABI.cpp -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu AutoGen: Parsing "SRC:/src/common/base/activation.hpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" AutoGen: Parsing "SRC:/src/common/base/ion.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" AutoGen: Parsing "SRC:/src/common/base/mod.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" AutoGen: Parsing "SRC:/src/common/base/residue.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" AutoGen: Parsing "SRC:/src/common/util/logger.hpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" AutoGen: Parsing "SRC:/src/console/topdiff_argument.hpp" AutoGen: Parsing "SRC:/src/console/topdiff_process.hpp" AutoGen: Parsing "SRC:/src/gui/topdiff/threadtopdiff.h" AutoGen: Parsing "SRC:/src/gui/topdiff/topdiffdialog.h" AutoGen: Parsing "SRC:/src/gui/util/run_exe.h" AutoGen: Parsing "SRC:/src/merge/feature_prsm.hpp" AutoGen: Parsing "SRC:/src/merge/feature_prsm_reader.hpp" AutoGen: Parsing "SRC:/src/merge/feature_sample_merge.hpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.hpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.hpp" AutoGen: Parsing "SRC:/src/common/base/activation.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" AutoGen: 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"SRC:/src/prsm/peak_ion_pair_util.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.hpp" AutoGen: Parsing "SRC:/src/common/base/residue.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.hpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.hpp" AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" AutoGen: Parsing "SRC:/src/common/util/logger.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.hpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.hpp" AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.hpp" AutoGen: 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"SRC:/src/common/xml/xml_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.hpp" AutoGen: Parsing "SRC:/src/console/topmerge_argument.hpp" AutoGen: Parsing "SRC:/src/seq/alter.hpp" AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" AutoGen: Parsing "SRC:/src/console/topmerge_process.hpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" AutoGen: Parsing "SRC:/src/seq/break_point.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" AutoGen: Parsing "SRC:/src/seq/db_block.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.hpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" AutoGen: Parsing "SRC:/src/common/base/activation.cpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" AutoGen: Parsing "SRC:/src/common/base/ion.cpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" AutoGen: Parsing "SRC:/src/common/base/mod.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" AutoGen: Parsing "SRC:/src/common/base/residue.cpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.hpp" AutoGen: Parsing "SRC:/src/common/util/logger.cpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.hpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" AutoGen: Parsing "SRC:/src/para/sp_para.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" AutoGen: Parsing "SRC:/src/prsm/expected_value.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm.hpp" AutoGen: Parsing "SRC:/src/console/topdiff_argument.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.hpp" AutoGen: Parsing "SRC:/src/console/topdiff_process.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.hpp" AutoGen: Parsing "SRC:/src/gui/topdiff/threadtopdiff.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.hpp" AutoGen: Parsing "SRC:/src/gui/topdiff/topdiff_gui.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.hpp" AutoGen: Parsing "SRC:/src/gui/topdiff/topdiffdialog.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.hpp" AutoGen: Parsing "SRC:/src/seq/alter.hpp" AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" AutoGen: Parsing "SRC:/src/seq/break_point.hpp" AutoGen: Parsing "SRC:/src/seq/db_block.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" AutoGen: Parsing "SRC:/src/gui/util/run_exe.cpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" AutoGen: Parsing "SRC:/src/stat/local/local_mng.hpp" AutoGen: Parsing "SRC:/src/stat/local/local_processor.hpp" AutoGen: Parsing "SRC:/src/merge/feature_prsm.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_proteoform.hpp" AutoGen: Parsing "SRC:/src/merge/feature_prsm_reader.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_util.hpp" AutoGen: Parsing "SRC:/src/merge/feature_sample_merge.cpp" AutoGen: Parsing "SRC:/src/visual/anno_cleavage.hpp" AutoGen: Parsing "SRC:/src/visual/anno_file_list.hpp" AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.hpp" AutoGen: Parsing "SRC:/src/visual/anno_proteoform.hpp" AutoGen: Parsing "SRC:/src/visual/anno_prsm.hpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm.hpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.hpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" AutoGen: Parsing "SRC:/src/visual/anno_residue.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" AutoGen: Parsing "SRC:/src/visual/anno_xml_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" AutoGen: Parsing "SRC:/src/visual/json_transformer.hpp" AutoGen: Parsing "SRC:/src/visual/xml_generator.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" AutoGen: Parsing "SRC:/src/common/base/activation.cpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" AutoGen: Parsing "SRC:/src/common/base/ion.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" AutoGen: Parsing "SRC:/src/common/base/mod.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" AutoGen: Parsing "SRC:/src/common/base/residue.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" AutoGen: Parsing "SRC:/src/common/util/logger.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" AutoGen: Parsing "SRC:/src/console/topmerge.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" AutoGen: Parsing "SRC:/src/console/topmerge_argument.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" AutoGen: Parsing "SRC:/src/console/topmerge_process.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" AutoGen: Parsing "SRC:/src/para/sp_para.cpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.cpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" AutoGen: Parsing "SRC:/src/seq/alter.cpp" AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" AutoGen: Parsing "SRC:/src/para/sp_para.cpp" AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp" AutoGen: Parsing "SRC:/src/seq/break_point.cpp" AutoGen: Parsing "SRC:/src/seq/db_block.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp" AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.cpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.cpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.cpp" AutoGen: Parsing "SRC:/src/seq/alter.cpp" AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.hpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" AutoGen: Parsing "SRC:/src/seq/break_point.cpp" AutoGen: Parsing "SRC:/src/seq/db_block.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" AutoUic: Generating "SRC:/obj-x86_64-linux-gnu/topdiff_gui_autogen/include/gui/topdiff/ui_topdiffdialog.h", because it doesn't exist, from "SRC:/src/gui/topdiff/topdiffdialog.ui" /usr/lib/qt5/bin/uic -o /<>/obj-x86_64-linux-gnu/topdiff_gui_autogen/include/gui/topdiff/ui_topdiffdialog.h /<>/src/gui/topdiff/topdiffdialog.ui AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topdiff_gui_autogen/4YKSSMFELI/moc_threadtopdiff.cpp", because it doesn't exist, from "SRC:/src/gui/topdiff/threadtopdiff.h" /usr/lib/qt5/bin/moc -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --include /<>/obj-x86_64-linux-gnu/topdiff_gui_autogen/moc_predefs.h --output-dep-file -o /<>/obj-x86_64-linux-gnu/topdiff_gui_autogen/4YKSSMFELI/moc_threadtopdiff.cpp /<>/src/gui/topdiff/threadtopdiff.h AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_mng.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_processor.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_proteoform.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_util.cpp" AutoGen: Parsing "SRC:/src/visual/anno_cleavage.cpp" AutoGen: Parsing "SRC:/src/visual/anno_file_list.cpp" AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.cpp" AutoGen: Parsing "SRC:/src/visual/anno_proteoform.cpp" AutoGen: Parsing "SRC:/src/visual/anno_prsm.cpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm.cpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.cpp" AutoGen: Parsing "SRC:/src/visual/anno_residue.cpp" AutoGen: Parsing "SRC:/src/visual/anno_xml_util.cpp" AutoGen: Parsing "SRC:/src/visual/json_transformer.cpp" AutoGen: Parsing "SRC:/src/visual/xml_generator.cpp" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/topmerge_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/topmerge_autogen/deps" AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topmerge_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topmerge_autogen.dir/AutogenUsed.txt" /usr/bin/cmake -E touch /<>/obj-x86_64-linux-gnu/topmerge_autogen/timestamp AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topdiff_gui_autogen/4YKSSMFELI/moc_topdiffdialog.cpp", because it doesn't exist, from "SRC:/src/gui/topdiff/topdiffdialog.h" /usr/lib/qt5/bin/moc -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --include /<>/obj-x86_64-linux-gnu/topdiff_gui_autogen/moc_predefs.h --output-dep-file -o /<>/obj-x86_64-linux-gnu/topdiff_gui_autogen/4YKSSMFELI/moc_topdiffdialog.cpp /<>/src/gui/topdiff/topdiffdialog.h make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 1%] Built target topmerge_autogen make -f CMakeFiles/topmerge_gui_autogen.dir/build.make CMakeFiles/topmerge_gui_autogen.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/CMakeFiles/topmerge_gui_autogen.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f CMakeFiles/topmerge_gui_autogen.dir/build.make CMakeFiles/topmerge_gui_autogen.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 1%] Automatic MOC and UIC for target topmerge_gui /usr/bin/cmake -E cmake_autogen /<>/obj-x86_64-linux-gnu/CMakeFiles/topmerge_gui_autogen.dir/AutogenInfo.json release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topmerge_gui_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -dM -E -c /usr/share/cmake-3.28/Modules/CMakeCXXCompilerABI.cpp -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu AutoGen: Parsing "SRC:/src/common/base/activation.hpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" AutoGen: Parsing "SRC:/src/common/base/ion.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" AutoGen: Parsing "SRC:/src/common/base/mod.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" AutoGen: Parsing "SRC:/src/common/base/residue.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" AutoGen: Parsing "SRC:/src/common/util/logger.hpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" AutoGen: Parsing "SRC:/src/console/topmerge_argument.hpp" AutoGen: Parsing "SRC:/src/console/topmerge_process.hpp" AutoGen: Parsing "SRC:/src/gui/topmerge/threadtopmerge.h" AutoGen: Parsing "SRC:/src/gui/topmerge/topmergedialog.h" AutoGen: Parsing "SRC:/src/gui/util/run_exe.h" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.hpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.hpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.hpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" AutoGen: Parsing "SRC:/src/para/sp_para.hpp" AutoGen: Parsing "SRC:/src/prsm/expected_value.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.hpp" AutoGen: Parsing "SRC:/src/seq/alter.hpp" AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" AutoGen: Parsing "SRC:/src/seq/break_point.hpp" AutoGen: Parsing "SRC:/src/seq/db_block.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" AutoGen: Parsing "SRC:/src/stat/local/local_mng.hpp" AutoGen: Parsing "SRC:/src/stat/local/local_processor.hpp" AutoGen: Parsing "SRC:/src/stat/local/local_proteoform.hpp" AutoGen: Parsing "SRC:/src/stat/local/local_util.hpp" AutoGen: Parsing "SRC:/src/visual/anno_cleavage.hpp" AutoGen: Parsing "SRC:/src/visual/anno_file_list.hpp" AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.hpp" AutoGen: Parsing "SRC:/src/visual/anno_proteoform.hpp" AutoGen: Parsing "SRC:/src/visual/anno_prsm.hpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm.hpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.hpp" AutoGen: Parsing "SRC:/src/visual/anno_residue.hpp" AutoGen: Parsing "SRC:/src/visual/anno_xml_util.hpp" AutoGen: Parsing "SRC:/src/visual/json_transformer.hpp" AutoGen: Parsing "SRC:/src/visual/xml_generator.hpp" AutoGen: Parsing "SRC:/src/common/base/activation.cpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" AutoGen: Parsing "SRC:/src/common/base/ion.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" AutoGen: Parsing "SRC:/src/common/base/mod.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" AutoGen: Parsing "SRC:/src/common/base/residue.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" AutoGen: Parsing "SRC:/src/common/util/logger.cpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" AutoGen: Parsing "SRC:/src/console/topmerge_argument.cpp" AutoGen: Parsing "SRC:/src/console/topmerge_process.cpp" AutoGen: Parsing "SRC:/src/gui/topmerge/threadtopmerge.cpp" AutoGen: Parsing "SRC:/src/gui/topmerge/topmerge_gui.cpp" AutoGen: Parsing "SRC:/src/gui/topmerge/topmergedialog.cpp" AutoGen: Parsing "SRC:/src/gui/util/run_exe.cpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" AutoGen: Parsing "SRC:/src/para/sp_para.cpp" AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.cpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.cpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.cpp" AutoGen: Parsing "SRC:/src/seq/alter.cpp" AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" AutoGen: Parsing "SRC:/src/seq/break_point.cpp" AutoGen: Parsing "SRC:/src/seq/db_block.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_mng.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_processor.cpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_proteoform.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_util.cpp" AutoGen: Parsing "SRC:/src/visual/anno_cleavage.cpp" AutoGen: Parsing "SRC:/src/visual/anno_file_list.cpp" AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.cpp" AutoGen: Parsing "SRC:/src/visual/anno_proteoform.cpp" AutoGen: Parsing "SRC:/src/visual/anno_prsm.cpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm.cpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.cpp" AutoGen: Parsing "SRC:/src/visual/anno_residue.cpp" AutoGen: Parsing "SRC:/src/visual/anno_xml_util.cpp" AutoGen: Parsing "SRC:/src/visual/json_transformer.cpp" AutoGen: Parsing "SRC:/src/visual/xml_generator.cpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp" AutoUic: Generating "SRC:/obj-x86_64-linux-gnu/topmerge_gui_autogen/include/gui/topmerge/ui_topmergedialog.h", because it doesn't exist, from "SRC:/src/gui/topmerge/topmergedialog.ui" /usr/lib/qt5/bin/uic -o /<>/obj-x86_64-linux-gnu/topmerge_gui_autogen/include/gui/topmerge/ui_topmergedialog.h /<>/src/gui/topmerge/topmergedialog.ui AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topmerge_gui_autogen/FNASZ5VCWY/moc_topmergedialog.cpp", because it doesn't exist, from "SRC:/src/gui/topmerge/topmergedialog.h" /usr/lib/qt5/bin/moc -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --include /<>/obj-x86_64-linux-gnu/topmerge_gui_autogen/moc_predefs.h --output-dep-file -o /<>/obj-x86_64-linux-gnu/topmerge_gui_autogen/FNASZ5VCWY/moc_topmergedialog.cpp /<>/src/gui/topmerge/topmergedialog.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topmerge_gui_autogen/FNASZ5VCWY/moc_threadtopmerge.cpp", because it doesn't exist, from "SRC:/src/gui/topmerge/threadtopmerge.h" /usr/lib/qt5/bin/moc -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --include /<>/obj-x86_64-linux-gnu/topmerge_gui_autogen/moc_predefs.h --output-dep-file -o /<>/obj-x86_64-linux-gnu/topmerge_gui_autogen/FNASZ5VCWY/moc_threadtopmerge.cpp /<>/src/gui/topmerge/threadtopmerge.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/topdiff_gui_autogen/4YKSSMFELI/moc_threadtopdiff.cpp.d" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/topdiff_gui_autogen/4YKSSMFELI/moc_topdiffdialog.cpp.d" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/topdiff_gui_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/topdiff_gui_autogen/deps" AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topdiff_gui_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topdiff_gui_autogen.dir/AutogenUsed.txt" /usr/bin/cmake -E touch /<>/obj-x86_64-linux-gnu/topdiff_gui_autogen/timestamp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/toppic_gui_autogen/23BTPJIYMA/moc_threadtoppic.cpp.d" [ 1%] Built target topdiff_gui_autogen make -f CMakeFiles/topconvert_autogen.dir/build.make CMakeFiles/topconvert_autogen.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/CMakeFiles/topconvert_autogen.dir/DependInfo.cmake "--color=" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/topmerge_gui_autogen/FNASZ5VCWY/moc_threadtopmerge.cpp.d" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f CMakeFiles/topconvert_autogen.dir/build.make CMakeFiles/topconvert_autogen.dir/build AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/topmerge_gui_autogen/FNASZ5VCWY/moc_topmergedialog.cpp.d" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/topmerge_gui_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/topmerge_gui_autogen/deps" make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topmerge_gui_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topmerge_gui_autogen.dir/AutogenUsed.txt" /usr/bin/cmake -E touch /<>/obj-x86_64-linux-gnu/topmerge_gui_autogen/timestamp [ 1%] Automatic MOC and UIC for target topconvert /usr/bin/cmake -E cmake_autogen /<>/obj-x86_64-linux-gnu/CMakeFiles/topconvert_autogen.dir/AutogenInfo.json release AutoGen: Refreshing parse cache because it doesn't exist. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topconvert_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -dM -E -c /usr/share/cmake-3.28/Modules/CMakeCXXCompilerABI.cpp -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu [ 1%] Built target topmerge_gui_autogen AutoGen: Parsing "SRC:/src/common/base/activation.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" AutoGen: Parsing "SRC:/src/common/base/ion.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" AutoGen: Parsing "SRC:/src/common/base/mod.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" AutoGen: Parsing "SRC:/src/common/base/residue.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" AutoGen: Parsing "SRC:/src/common/util/logger.hpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" AutoGen: Parsing "SRC:/src/console/topconvert_process.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.hpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.hpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp" AutoGen: Parsing "SRC:/src/console/toppic_argument.hpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.hpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" AutoGen: Parsing "SRC:/src/para/sp_para.hpp" AutoGen: Parsing "SRC:/src/prsm/expected_value.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.hpp" make -f CMakeFiles/topfd.dir/build.make CMakeFiles/topfd.dir/depend AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.hpp" AutoGen: Parsing "SRC:/src/seq/alter.hpp" AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" AutoGen: Parsing "SRC:/src/seq/break_point.hpp" AutoGen: Parsing "SRC:/src/seq/db_block.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" AutoGen: Parsing "SRC:/src/common/base/activation.cpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" AutoGen: Parsing "SRC:/src/common/base/ion.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" AutoGen: Parsing "SRC:/src/common/base/mod.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" AutoGen: Parsing "SRC:/src/common/base/residue.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" AutoGen: Parsing "SRC:/src/common/util/logger.cpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" AutoGen: Parsing "SRC:/src/console/topconvert.cpp" AutoGen: Parsing "SRC:/src/console/topconvert_process.cpp" AutoGen: Parsing "SRC:/src/console/toppic_argument.cpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" AutoGen: Parsing "SRC:/src/para/sp_para.cpp" AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.cpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.cpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" AutoGen: Parsing "SRC:/src/seq/alter.cpp" AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" AutoGen: Parsing "SRC:/src/seq/break_point.cpp" AutoGen: Parsing "SRC:/src/seq/db_block.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/topconvert_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/topconvert_autogen/deps" AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topconvert_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topconvert_autogen.dir/AutogenUsed.txt" /usr/bin/cmake -E touch /<>/obj-x86_64-linux-gnu/topconvert_autogen/timestamp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu 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target toppic_gui_autogen [ 1%] Building CXX object CMakeFiles/topfd_gui.dir/topfd_gui_autogen/mocs_compilation.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/topfd_gui_autogen/mocs_compilation.cpp.o -MF 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-Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/common/topfd_process.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/common/topfd_process.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/common/topfd_process.cpp.o -c /<>/src/topfd/common/topfd_process.cpp [ 1%] Building CXX object CMakeFiles/topfd_gui.dir/src/gui/topfd/threadtopfd.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/gui/topfd/threadtopfd.cpp.o -MF CMakeFiles/topfd_gui.dir/src/gui/topfd/threadtopfd.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/gui/topfd/threadtopfd.cpp.o -c /<>/src/gui/topfd/threadtopfd.cpp In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/pwizlite/pwiz/utility/misc/IterationListener.hpp:29, from /usr/include/pwizlite/pwiz/data/msdata/Reader.hpp:28, from /usr/include/pwizlite/pwiz/data/msdata/DefaultReaderList.hpp:29, from /<>/src/topfd/common/topfd_process.hpp:23, from /<>/src/console/topfd.cpp:16: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma 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Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 1%] Building CXX object CMakeFiles/topfd.dir/src/topfd/deconv/deconv_one_sp.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topfd_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/deconv/deconv_one_sp.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/deconv/deconv_one_sp.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/deconv/deconv_one_sp.cpp.o -c /<>/src/topfd/deconv/deconv_one_sp.cpp In file included from /usr/include/boost/system/detail/requires_cxx11.hpp:9, from /usr/include/boost/system/detail/config.hpp:11, from /usr/include/boost/system/detail/error_category.hpp:13, from /usr/include/boost/system/detail/error_code.hpp:14, from /usr/include/boost/system/errc.hpp:14, from /usr/include/boost/system/system_error.hpp:9, from /usr/include/boost/thread/exceptions.hpp:22, from /usr/include/boost/thread/pthread/thread_data.hpp:10, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from /<>/src/common/thread/simple_thread_pool.hpp:21, from /<>/src/topfd/deconv/deconv_process.hpp:21, from /<>/src/topfd/common/topfd_process.cpp:24: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/pwizlite/pwiz/utility/misc/IterationListener.hpp:29, from /usr/include/pwizlite/pwiz/data/msdata/Reader.hpp:28, from /usr/include/pwizlite/pwiz/data/msdata/DefaultReaderList.hpp:29, from /<>/src/topfd/common/topfd_process.hpp:23, from /<>/src/gui/topfd/threadtopfd.cpp:16: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. 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/usr/include/x86_64-linux-gnu/qt5/QtWidgets/qdesktopwidget.h:88:67: note: declared here 88 | QT_DEPRECATED_X("Use QGuiApplication::screens()") const QRect availableGeometry(int screen = -1) const; | ^~~~~~~~~~~~~~~~~ [ 1%] Building CXX object CMakeFiles/topfd.dir/src/topfd/dp/dp_b.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topfd_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 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-I/<>/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/topfd/common/topfd_process.cpp.o -MF CMakeFiles/topfd_gui.dir/src/topfd/common/topfd_process.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/topfd/common/topfd_process.cpp.o -c /<>/src/topfd/common/topfd_process.cpp [ 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Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/typeof/detail/requires_cxx11.hpp:9, from /usr/include/boost/typeof/typeof.hpp:16, from /usr/include/boost/numeric/ublas/traits.hpp:29, from /usr/include/boost/numeric/ublas/storage.hpp:27, from /usr/include/boost/numeric/ublas/vector.hpp:21, from /usr/include/boost/numeric/ublas/matrix.hpp:18, from /<>/src/ms/feature/savitzky_golay.hpp:19, from /<>/src/ms/feature/peak_cluster.hpp:27, from /<>/src/topfd/feature_detect/feature_detect.cpp:37: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 2%] Building CXX object CMakeFiles/topfd_gui.dir/src/topfd/deconv/deconv_one_sp.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/topfd/deconv/deconv_one_sp.cpp.o -MF CMakeFiles/topfd_gui.dir/src/topfd/deconv/deconv_one_sp.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/topfd/deconv/deconv_one_sp.cpp.o -c /<>/src/topfd/deconv/deconv_one_sp.cpp [ 2%] Building CXX object CMakeFiles/topindex.dir/src/console/topindex_process.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topindex_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/console/topindex_process.cpp.o -MF CMakeFiles/topindex.dir/src/console/topindex_process.cpp.o.d -o CMakeFiles/topindex.dir/src/console/topindex_process.cpp.o -c /<>/src/console/topindex_process.cpp [ 2%] Building CXX object CMakeFiles/topfd_gui.dir/src/topfd/deconv/deconv_process.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/topfd/deconv/deconv_process.cpp.o -MF CMakeFiles/topfd_gui.dir/src/topfd/deconv/deconv_process.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/topfd/deconv/deconv_process.cpp.o -c /<>/src/topfd/deconv/deconv_process.cpp [ 2%] Building CXX object CMakeFiles/topfd.dir/src/topfd/feature_detect/feature_para.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topfd_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -fno-omit-frame-pointer 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/usr/include/boost/filesystem/path.hpp:21, from /usr/include/boost/filesystem.hpp:16, from /<>/src/topfd/deconv/deconv_process.cpp:17: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 2%] Building CXX object CMakeFiles/topfd.dir/src/topfd/msreader/pw_ms_reader.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topfd_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/msreader/pw_ms_reader.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/msreader/pw_ms_reader.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/msreader/pw_ms_reader.cpp.o -c /<>/src/topfd/msreader/pw_ms_reader.cpp In file included from /usr/include/boost/lexical_cast.hpp:26, from /usr/include/pwizlite/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /usr/include/pwizlite/pwiz/data/common/ParamTypes.hpp:29, from /usr/include/pwizlite/pwiz/data/msdata/MSData.hpp:30, from /usr/include/pwizlite/pwiz/data/msdata/SpectrumInfo.hpp:29, from /<>/src/topfd/msreader/pw_ms_reader.cpp:15: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. 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-I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/topfd/dp/co_table.cpp.o -MF CMakeFiles/topfd_gui.dir/src/topfd/dp/co_table.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/topfd/dp/co_table.cpp.o -c /<>/src/topfd/dp/co_table.cpp In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/pwizlite/pwiz/utility/misc/IterationListener.hpp:29, from /usr/include/pwizlite/pwiz/data/msdata/Reader.hpp:28, from /usr/include/pwizlite/pwiz/data/msdata/DefaultReaderList.hpp:29, from /<>/src/topfd/msreader/pw_ms_reader.hpp:22, from /<>/src/topfd/msreader/raw_ms_group_reader.hpp:19, from /<>/src/topfd/msreader/raw_ms_group_reader.cpp:19: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. 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-fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/base/ion_type.cpp.o -MF CMakeFiles/topindex.dir/src/common/base/ion_type.cpp.o.d -o CMakeFiles/topindex.dir/src/common/base/ion_type.cpp.o -c /<>/src/common/base/ion_type.cpp [ 2%] Building CXX object CMakeFiles/topindex.dir/src/common/base/ion_type_base.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topindex_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto 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-I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/base/mod.cpp.o -MF CMakeFiles/topindex.dir/src/common/base/mod.cpp.o.d -o CMakeFiles/topindex.dir/src/common/base/mod.cpp.o -c /<>/src/common/base/mod.cpp [ 2%] Building CXX object CMakeFiles/topindex.dir/src/common/base/mod_base.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> 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/usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/pwizlite/pwiz/utility/misc/IterationListener.hpp:29, from /usr/include/pwizlite/pwiz/data/msdata/Reader.hpp:28, from /usr/include/pwizlite/pwiz/data/msdata/DefaultReaderList.hpp:29, from /<>/src/topfd/msreader/pw_ms_reader.hpp:22, from /<>/src/topfd/msreader/raw_ms_reader.hpp:20, from /<>/src/topfd/msreader/raw_ms_reader.cpp:19: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. 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-std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/base/ptm_base.cpp.o -MF CMakeFiles/topfd.dir/src/common/base/ptm_base.cpp.o.d -o CMakeFiles/topfd.dir/src/common/base/ptm_base.cpp.o -c /<>/src/common/base/ptm_base.cpp /<>/src/common/util/file_util.cpp: In function ‘void toppic::file_util::copyFile(const std::string&, const std::string&, bool)’: /<>/src/common/util/file_util.cpp:165:18: warning: ‘bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)’ is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/filesystem.hpp:19, from /<>/src/common/util/file_util.cpp:24: /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline 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-Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/alter_type.cpp.o -MF CMakeFiles/topindex.dir/src/seq/alter_type.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/alter_type.cpp.o -c /<>/src/seq/alter_type.cpp /<>/src/gui/topindex/topindex_gui.cpp: In function ‘int main(int, char**)’: /<>/src/gui/topindex/topindex_gui.cpp:40:43: warning: ‘const QRect QDesktopWidget::availableGeometry(int) const’ is deprecated: Use QGuiApplication::screens() [-Wdeprecated-declarations] 40 | QRect deskRect = desk->availableGeometry(); | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QDesktopWidget:1, from /<>/src/gui/topindex/topindex_gui.cpp:19: /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qdesktopwidget.h:88:67: note: declared here 88 | QT_DEPRECATED_X("Use QGuiApplication::screens()") const QRect availableGeometry(int screen = -1) const; | ^~~~~~~~~~~~~~~~~ [ 7%] Building CXX object CMakeFiles/topindex_gui.dir/src/gui/topindex/topindexdialog.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topindex_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/gui/topindex/topindexdialog.cpp.o -MF 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-O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/amino_acid_replace.cpp.o -MF CMakeFiles/topindex.dir/src/seq/amino_acid_replace.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/amino_acid_replace.cpp.o -c /<>/src/seq/amino_acid_replace.cpp [ 7%] Building CXX object CMakeFiles/topindex.dir/src/seq/bp_spec.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topindex_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/bp_spec.cpp.o -MF CMakeFiles/topindex.dir/src/seq/bp_spec.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/bp_spec.cpp.o -c /<>/src/seq/bp_spec.cpp [ 7%] Building CXX object CMakeFiles/topfd.dir/src/common/util/file_util.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topfd_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/util/file_util.cpp.o -MF CMakeFiles/topfd.dir/src/common/util/file_util.cpp.o.d -o CMakeFiles/topfd.dir/src/common/util/file_util.cpp.o -c /<>/src/common/util/file_util.cpp /<>/src/common/util/file_util.cpp: In function ‘void toppic::file_util::copyFile(const std::string&, const std::string&, bool)’: /<>/src/common/util/file_util.cpp:165:18: warning: ‘bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)’ is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/filesystem.hpp:19, from /<>/src/common/util/file_util.cpp:24: /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ /<>/src/common/util/file_util.cpp:168:18: warning: ‘bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)’ is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 168 | fs::copy_file(from_path, to_path, fs::copy_option::fail_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ [ 7%] Building CXX object CMakeFiles/topindex.dir/src/seq/break_point.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topindex_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 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-fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/filter/index/one_ptm_index.cpp.o -MF CMakeFiles/topindex.dir/src/filter/index/one_ptm_index.cpp.o.d -o CMakeFiles/topindex.dir/src/filter/index/one_ptm_index.cpp.o -c /<>/src/filter/index/one_ptm_index.cpp [ 10%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/real_env.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topfd_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto 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/usr/include/pwizlite/pwiz/data/msdata/MSData.hpp:30, from /usr/include/pwizlite/pwiz/data/msdata/SpectrumInfo.hpp:29, from /<>/src/topfd/msreader/pw_ms_reader.cpp:15: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. 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-I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_group_reader.cpp.o -MF CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_group_reader.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_group_reader.cpp.o -c /<>/src/topfd/msreader/raw_ms_group_reader.cpp [ 11%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/ptm_util.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu 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CXX object CMakeFiles/topindex_gui.dir/src/common/base/residue.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topindex_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/residue.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/residue.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/residue.cpp.o -c /<>/src/common/base/residue.cpp In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/pwizlite/pwiz/utility/misc/IterationListener.hpp:29, from /usr/include/pwizlite/pwiz/data/msdata/Reader.hpp:28, from /usr/include/pwizlite/pwiz/data/msdata/DefaultReaderList.hpp:29, from /<>/src/topfd/msreader/pw_ms_reader.hpp:22, from /<>/src/topfd/msreader/raw_ms_group_reader.hpp:19, from /<>/src/topfd/msreader/raw_ms_group_reader.cpp:19: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. 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CMakeFiles/topindex_gui.dir/src/common/base/residue_base.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/residue_base.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/residue_base.cpp.o -c /<>/src/common/base/residue_base.cpp [ 11%] Building CXX object CMakeFiles/topindex.dir/src/filter/index/zero_ptm_index.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topindex_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall 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-I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_reader.cpp.o -MF CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_reader.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_reader.cpp.o -c /<>/src/topfd/msreader/raw_ms_reader.cpp [ 11%] Building CXX object CMakeFiles/topfd.dir/src/ms/factory/prm_peak_factory.cpp.o /usr/bin/c++ 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/<>/src/topfd/msreader/raw_ms_reader.hpp:20, from /<>/src/topfd/msreader/raw_ms_reader.cpp:19: /usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. 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/<>/src/common/util/file_util.cpp [ 11%] Building CXX object CMakeFiles/topindex.dir/src/filter/massmatch/mass_match_factory.cpp.o [ 11%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/activation_base.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topindex_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 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-Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/base/activation_base.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/activation_base.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/activation_base.cpp.o -c /<>/src/common/base/activation_base.cpp [ 11%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/frac_feature_writer.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topfd_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/frac_feature_writer.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/frac_feature_writer.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/frac_feature_writer.cpp.o -c /<>/src/ms/feature/frac_feature_writer.cpp /<>/src/common/util/file_util.cpp: In function ‘void toppic::file_util::copyFile(const std::string&, const std::string&, bool)’: /<>/src/common/util/file_util.cpp:165:18: warning: ‘bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)’ is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/filesystem.hpp:19, from /<>/src/common/util/file_util.cpp:24: /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ /<>/src/common/util/file_util.cpp:168:18: warning: ‘bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)’ is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 168 | fs::copy_file(from_path, to_path, fs::copy_option::fail_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ [ 11%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/amino_acid.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/<>/src -I/<>/ext 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-I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/spec_feature.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/spec_feature.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/spec_feature.cpp.o -c /<>/src/ms/feature/spec_feature.cpp [ 13%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/ptm_util.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topfd_gui_autogen/include 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-I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/base_peak_type.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/base_peak_type.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/base_peak_type.cpp.o -c /<>/src/ms/spec/base_peak_type.cpp [ 14%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/fasta_util.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topindex_gui_autogen/include -I/<>/src -I/<>/ext 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CMakeFiles/topfd_gui.dir/src/common/base/residue_freq.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/base/residue_freq.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/residue_freq.cpp.o.d -o 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-I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/extend_peak.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/extend_peak.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/extend_peak.cpp.o -c /<>/src/ms/spec/extend_peak.cpp [ 14%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/ms_header.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> 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-D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/msalign_frac_merge.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/msalign_frac_merge.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/msalign_frac_merge.cpp.o -c /<>/src/ms/spec/msalign_frac_merge.cpp [ 14%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/msalign_thread_merge.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topfd_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection 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-I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/util/file_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/util/file_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/util/file_util.cpp.o -c /<>/src/common/util/file_util.cpp [ 14%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/msalign_util.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topfd_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/msalign_util.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/msalign_util.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/msalign_util.cpp.o -c /<>/src/ms/spec/msalign_util.cpp /<>/src/common/util/file_util.cpp: In function ‘void toppic::file_util::copyFile(const std::string&, const std::string&, bool)’: /<>/src/common/util/file_util.cpp:165:18: warning: ‘bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)’ is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/filesystem.hpp:19, from /<>/src/common/util/file_util.cpp:24: /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ /<>/src/common/util/file_util.cpp:168:18: warning: ‘bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)’ is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 168 | fs::copy_file(from_path, to_path, fs::copy_option::fail_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ [ 14%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/msalign_writer.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topfd_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall 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/<>/src/gui/toppic/toppic_gui.cpp:36:43: warning: ‘const QRect QDesktopWidget::availableGeometry(int) const’ is deprecated: Use QGuiApplication::screens() [-Wdeprecated-declarations] 36 | QRect deskRect = desk->availableGeometry(); | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QDesktopWidget:1, from /<>/src/gui/toppic/toppic_gui.cpp:18: /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qdesktopwidget.h:88:67: note: declared here 88 | QT_DEPRECATED_X("Use QGuiApplication::screens()") const QRect availableGeometry(int screen = -1) const; | ^~~~~~~~~~~~~~~~~ [ 19%] Building CXX object CMakeFiles/toppic_gui.dir/src/gui/toppic/toppicwindow.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore 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-I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/factory/prm_ms_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/factory/prm_ms_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/factory/prm_ms_util.cpp.o -c /<>/src/ms/factory/prm_ms_util.cpp [ 19%] Building CXX object CMakeFiles/toppic.dir/src/common/util/file_util.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/toppic_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/util/file_util.cpp.o -MF CMakeFiles/toppic.dir/src/common/util/file_util.cpp.o.d -o CMakeFiles/toppic.dir/src/common/util/file_util.cpp.o -c /<>/src/common/util/file_util.cpp /<>/src/common/util/file_util.cpp: In function ‘void toppic::file_util::copyFile(const std::string&, const std::string&, bool)’: /<>/src/common/util/file_util.cpp:165:18: warning: ‘bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)’ is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/filesystem.hpp:19, from /<>/src/common/util/file_util.cpp:24: /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ /<>/src/common/util/file_util.cpp:168:18: warning: ‘bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)’ is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 168 | fs::copy_file(from_path, to_path, fs::copy_option::fail_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ [ 19%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/factory/prm_peak_factory.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 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-Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/topmg_autogen/mocs_compilation.cpp.o -MF CMakeFiles/topmg.dir/topmg_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/topmg.dir/topmg_autogen/mocs_compilation.cpp.o -c /<>/obj-x86_64-linux-gnu/topmg_autogen/mocs_compilation.cpp [ 20%] Building CXX object CMakeFiles/topmg.dir/src/console/topmg.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmg_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/console/topmg.cpp.o -MF CMakeFiles/topmg.dir/src/console/topmg.cpp.o.d -o CMakeFiles/topmg.dir/src/console/topmg.cpp.o -c /<>/src/console/topmg.cpp [ 20%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/peak_cluster_score.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/feature/peak_cluster_score.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/feature/peak_cluster_score.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/feature/peak_cluster_score.cpp.o -c /<>/src/ms/feature/peak_cluster_score.cpp [ 20%] Building CXX object CMakeFiles/toppic.dir/src/seq/fasta_sub_seq.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/toppic_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/fasta_sub_seq.cpp.o -MF CMakeFiles/toppic.dir/src/seq/fasta_sub_seq.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/fasta_sub_seq.cpp.o -c /<>/src/seq/fasta_sub_seq.cpp [ 20%] Building CXX object CMakeFiles/toppic.dir/src/seq/fasta_sub_util.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/toppic_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/fasta_sub_util.cpp.o -MF CMakeFiles/toppic.dir/src/seq/fasta_sub_util.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/fasta_sub_util.cpp.o -c /<>/src/seq/fasta_sub_util.cpp [ 20%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/sample_feature.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/feature/sample_feature.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/feature/sample_feature.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/feature/sample_feature.cpp.o -c /<>/src/ms/feature/sample_feature.cpp [ 20%] Building CXX object CMakeFiles/topmg.dir/src/console/topmg_argument.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmg_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/console/topmg_argument.cpp.o -MF CMakeFiles/topmg.dir/src/console/topmg_argument.cpp.o.d -o CMakeFiles/topmg.dir/src/console/topmg_argument.cpp.o -c /<>/src/console/topmg_argument.cpp [ 20%] Building CXX object CMakeFiles/toppic.dir/src/seq/fasta_util.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/toppic_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/toppic.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/fasta_util.cpp.o -c /<>/src/seq/fasta_util.cpp /<>/src/seq/fasta_util.cpp: In function ‘void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)’: /<>/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of ‘int fai_build(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 154 | fai_build(db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /<>/src/seq/fasta_util.cpp: In function ‘void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)’: /<>/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of ‘int fai_build(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 202 | fai_build(new_db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 20%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/sample_feature_reader.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> 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/<>/src/ms/feature/sample_feature_reader.cpp [ 20%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/activation.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/activation.cpp.o -MF 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-fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/local_anno.cpp.o -MF CMakeFiles/toppic.dir/src/seq/local_anno.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/local_anno.cpp.o -c /<>/src/seq/local_anno.cpp [ 20%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/activation_base.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong 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-DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/base/neutral_loss_base.cpp.o -MF CMakeFiles/topmg.dir/src/common/base/neutral_loss_base.cpp.o.d -o CMakeFiles/topmg.dir/src/common/base/neutral_loss_base.cpp.o -c /<>/src/common/base/neutral_loss_base.cpp [ 26%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/match_env_filter.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/toppic_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/env/match_env_filter.cpp.o -MF CMakeFiles/toppic.dir/src/ms/env/match_env_filter.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/env/match_env_filter.cpp.o -c /<>/src/ms/env/match_env_filter.cpp [ 26%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/util/file_util.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/util/file_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/util/file_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/util/file_util.cpp.o -c /<>/src/common/util/file_util.cpp [ 26%] Building CXX object CMakeFiles/topmg.dir/src/common/base/prot_mod.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmg_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/base/prot_mod.cpp.o -MF CMakeFiles/topmg.dir/src/common/base/prot_mod.cpp.o.d -o CMakeFiles/topmg.dir/src/common/base/prot_mod.cpp.o -c /<>/src/common/base/prot_mod.cpp [ 26%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/match_env_refine.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/toppic_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/env/match_env_refine.cpp.o -MF CMakeFiles/toppic.dir/src/ms/env/match_env_refine.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/env/match_env_refine.cpp.o -c /<>/src/ms/env/match_env_refine.cpp /<>/src/common/util/file_util.cpp: In function ‘void toppic::file_util::copyFile(const std::string&, const std::string&, bool)’: /<>/src/common/util/file_util.cpp:165:18: warning: ‘bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)’ is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/filesystem.hpp:19, from /<>/src/common/util/file_util.cpp:24: /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ /<>/src/common/util/file_util.cpp:168:18: warning: ‘bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)’ is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 168 | fs::copy_file(from_path, to_path, fs::copy_option::fail_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ [ 26%] Building CXX object CMakeFiles/topmg.dir/src/common/base/prot_mod_base.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmg_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/base/prot_mod_base.cpp.o -MF 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-D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/factory/prm_peak_factory.cpp.o -MF CMakeFiles/toppic.dir/src/ms/factory/prm_peak_factory.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/factory/prm_peak_factory.cpp.o -c /<>/src/ms/factory/prm_peak_factory.cpp [ 28%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/db_block.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat 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-I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/seq/fasta_index_reader.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/fasta_index_reader.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/fasta_index_reader.cpp.o -c /<>/src/seq/fasta_index_reader.cpp [ 29%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/fasta_reader.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/seq/fasta_reader.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/fasta_reader.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/fasta_reader.cpp.o -c /<>/src/seq/fasta_reader.cpp [ 29%] Building CXX object CMakeFiles/toppic.dir/src/ms/feature/feature_merge.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/toppic_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/feature/feature_merge.cpp.o -MF CMakeFiles/toppic.dir/src/ms/feature/feature_merge.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/feature/feature_merge.cpp.o -c /<>/src/ms/feature/feature_merge.cpp [ 29%] Building CXX object CMakeFiles/topmg.dir/src/common/util/file_util.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmg_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/util/file_util.cpp.o -MF CMakeFiles/topmg.dir/src/common/util/file_util.cpp.o.d -o CMakeFiles/topmg.dir/src/common/util/file_util.cpp.o -c /<>/src/common/util/file_util.cpp [ 29%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/fasta_seq.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/seq/fasta_seq.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/fasta_seq.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/fasta_seq.cpp.o -c /<>/src/seq/fasta_seq.cpp /<>/src/common/util/file_util.cpp: In function ‘void toppic::file_util::copyFile(const std::string&, const std::string&, bool)’: /<>/src/common/util/file_util.cpp:165:18: warning: ‘bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)’ is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/filesystem.hpp:19, from /<>/src/common/util/file_util.cpp:24: /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ /<>/src/common/util/file_util.cpp:168:18: warning: ‘bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)’ is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 168 | fs::copy_file(from_path, to_path, fs::copy_option::fail_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 29%] Built target topfd_gui make -f CMakeFiles/topmg_gui.dir/build.make CMakeFiles/topmg_gui.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 29%] Automatic RCC for src/gui/topmg/icon.qrc /usr/bin/cmake -E cmake_autorcc /<>/obj-x86_64-linux-gnu/CMakeFiles/topmg_gui_autogen.dir/AutoRcc_icon_OBJ2MOUSMQ_Info.json release AutoRcc: Generating 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-I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/seq/fasta_sub_seq.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/fasta_sub_seq.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/fasta_sub_seq.cpp.o -c /<>/src/seq/fasta_sub_seq.cpp [ 29%] Building CXX object CMakeFiles/topmg.dir/src/common/util/mem_check.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmg_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/util/mem_check.cpp.o -MF CMakeFiles/topmg.dir/src/common/util/mem_check.cpp.o.d -o CMakeFiles/topmg.dir/src/common/util/mem_check.cpp.o -c /<>/src/common/util/mem_check.cpp [ 29%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/fasta_sub_util.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/seq/fasta_sub_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/fasta_sub_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/fasta_sub_util.cpp.o -c /<>/src/seq/fasta_sub_util.cpp [ 29%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/fasta_util.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/fasta_util.cpp.o -c /<>/src/seq/fasta_util.cpp [ 29%] Building CXX object CMakeFiles/toppic.dir/src/ms/feature/frac_feature_cluster.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/toppic_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/feature/frac_feature_cluster.cpp.o -MF CMakeFiles/toppic.dir/src/ms/feature/frac_feature_cluster.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/feature/frac_feature_cluster.cpp.o -c /<>/src/ms/feature/frac_feature_cluster.cpp [ 29%] Building CXX object CMakeFiles/topmg.dir/src/common/util/str_util.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmg_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT 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CMakeFiles/topmg.dir/src/seq/fasta_sub_util.cpp.o -c /<>/src/seq/fasta_sub_util.cpp [ 30%] Building CXX object CMakeFiles/toppic.dir/src/ms/feature/sample_feature_writer.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/toppic_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT 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-Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/seq/residue_seq.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/residue_seq.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/residue_seq.cpp.o -c /<>/src/seq/residue_seq.cpp [ 30%] Building CXX object CMakeFiles/topmg.dir/src/seq/fasta_util.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmg_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/topmg.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/fasta_util.cpp.o -c /<>/src/seq/fasta_util.cpp [ 30%] Building CXX object CMakeFiles/toppic.dir/src/ms/feature/savitzky_golay.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/toppic_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/feature/savitzky_golay.cpp.o -MF CMakeFiles/toppic.dir/src/ms/feature/savitzky_golay.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/feature/savitzky_golay.cpp.o -c /<>/src/ms/feature/savitzky_golay.cpp [ 30%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/seq_segment.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/seq/seq_segment.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/seq_segment.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/seq_segment.cpp.o -c /<>/src/seq/seq_segment.cpp [ 30%] Building CXX object CMakeFiles/toppic_gui.dir/src/para/peak_tolerance.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/para/peak_tolerance.cpp.o -MF CMakeFiles/toppic_gui.dir/src/para/peak_tolerance.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/para/peak_tolerance.cpp.o -c /<>/src/para/peak_tolerance.cpp /<>/src/seq/fasta_util.cpp: In function ‘void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)’: /<>/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of ‘int fai_build(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 154 | fai_build(db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /<>/src/seq/fasta_util.cpp: In function ‘void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)’: /<>/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of ‘int fai_build(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 202 | fai_build(new_db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 30%] Building CXX object CMakeFiles/toppic_gui.dir/src/para/prsm_para.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/console/topmg_argument.cpp.o -MF CMakeFiles/topmg_gui.dir/src/console/topmg_argument.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/console/topmg_argument.cpp.o -c /<>/src/console/topmg_argument.cpp [ 30%] Building CXX object CMakeFiles/topmg.dir/src/seq/local_anno.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmg_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/local_anno.cpp.o -MF CMakeFiles/topmg.dir/src/seq/local_anno.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/local_anno.cpp.o -c /<>/src/seq/local_anno.cpp [ 30%] Building CXX object CMakeFiles/toppic.dir/src/ms/feature/single_charge_feature.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/toppic_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/feature/single_charge_feature.cpp.o -MF CMakeFiles/toppic.dir/src/ms/feature/single_charge_feature.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/feature/single_charge_feature.cpp.o -c /<>/src/ms/feature/single_charge_feature.cpp [ 30%] Building CXX object CMakeFiles/topmg.dir/src/seq/mass_shift.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmg_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/mass_shift.cpp.o -MF CMakeFiles/topmg.dir/src/seq/mass_shift.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/mass_shift.cpp.o -c /<>/src/seq/mass_shift.cpp [ 30%] Building CXX object CMakeFiles/toppic.dir/src/ms/feature/spec_feature.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/toppic_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/feature/spec_feature.cpp.o -MF CMakeFiles/toppic.dir/src/ms/feature/spec_feature.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/feature/spec_feature.cpp.o -c /<>/src/ms/feature/spec_feature.cpp [ 30%] Building CXX object CMakeFiles/toppic_gui.dir/src/para/sp_para.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT 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[ 35%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_algo.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/toppic_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_algo.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_algo.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_algo.cpp.o -c /<>/src/prsm/prsm_algo.cpp [ 35%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/match_env_refine.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmg_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT 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-I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/thread/simple_thread_pool.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/thread/simple_thread_pool.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/thread/simple_thread_pool.cpp.o -c /<>/src/common/thread/simple_thread_pool.cpp [ 36%] Building CXX object CMakeFiles/topmg.dir/src/ms/factory/spectrum_set_factory.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmg_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/factory/spectrum_set_factory.cpp.o -MF CMakeFiles/topmg.dir/src/ms/factory/spectrum_set_factory.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/factory/spectrum_set_factory.cpp.o -c /<>/src/ms/factory/spectrum_set_factory.cpp [ 36%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/peak_cluster_score.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/feature/peak_cluster_score.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/feature/peak_cluster_score.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/feature/peak_cluster_score.cpp.o -c /<>/src/ms/feature/peak_cluster_score.cpp [ 36%] Building CXX object CMakeFiles/topmg.dir/src/ms/feature/feature_merge.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmg_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/feature/feature_merge.cpp.o -MF CMakeFiles/topmg.dir/src/ms/feature/feature_merge.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/feature/feature_merge.cpp.o -c /<>/src/ms/feature/feature_merge.cpp [ 36%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_form_filter.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/toppic_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_form_filter.cpp.o -c /<>/src/prsm/prsm_form_filter.cpp [ 37%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/util/file_util.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/util/file_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/util/file_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/util/file_util.cpp.o -c /<>/src/common/util/file_util.cpp [ 37%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature.cpp.o -c /<>/src/ms/feature/sample_feature.cpp /<>/src/common/util/file_util.cpp: In function ‘void toppic::file_util::copyFile(const std::string&, const std::string&, bool)’: /<>/src/common/util/file_util.cpp:165:18: warning: ‘bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)’ is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/filesystem.hpp:19, from /<>/src/common/util/file_util.cpp:24: /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ /<>/src/common/util/file_util.cpp:168:18: warning: ‘bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)’ is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 168 | fs::copy_file(from_path, to_path, fs::copy_option::fail_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ [ 37%] Building CXX object CMakeFiles/topmg.dir/src/ms/feature/frac_feature.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmg_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/feature/frac_feature.cpp.o -MF CMakeFiles/topmg.dir/src/ms/feature/frac_feature.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/feature/frac_feature.cpp.o -c /<>/src/ms/feature/frac_feature.cpp [ 37%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_match_table_writer.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/toppic_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_match_table_writer.cpp.o -c /<>/src/prsm/prsm_match_table_writer.cpp [ 37%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature_reader.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature_reader.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature_reader.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature_reader.cpp.o -c /<>/src/ms/feature/sample_feature_reader.cpp In file included from /<>/src/prsm/prsm_match_table_writer.cpp:23: /<>/src/prsm/prsm_match_table_writer.hpp: In constructor ‘toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)’: /<>/src/prsm/prsm_match_table_writer.hpp:51:8: warning: ‘toppic::PrsmMatchTableWriter::write_multiple_matches_’ will be initialized after [-Wreorder] 51 | bool write_multiple_matches_; | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/src/prsm/prsm_match_table_writer.hpp:47:15: warning: ‘std::string toppic::PrsmMatchTableWriter::output_file_ext_’ [-Wreorder] 47 | std::string output_file_ext_; | ^~~~~~~~~~~~~~~~ /<>/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, | ^~~~~~~~~~~~~~~~~~~~ [ 37%] Building CXX object CMakeFiles/topmg.dir/src/ms/feature/frac_feature_cluster.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmg_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/feature/frac_feature_cluster.cpp.o -MF CMakeFiles/topmg.dir/src/ms/feature/frac_feature_cluster.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/feature/frac_feature_cluster.cpp.o -c /<>/src/ms/feature/frac_feature_cluster.cpp [ 37%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/util/logger.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/util/logger.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/util/logger.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/util/logger.cpp.o -c /<>/src/common/util/logger.cpp [ 37%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature_writer.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature_writer.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature_writer.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature_writer.cpp.o -c /<>/src/ms/feature/sample_feature_writer.cpp [ 37%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/util/mem_check.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/util/mem_check.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/util/mem_check.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/util/mem_check.cpp.o -c /<>/src/common/util/mem_check.cpp [ 37%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/savitzky_golay.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/<>/src -I/<>/ext 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Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/spec_feature_writer.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/feature/spec_feature_writer.cpp.o -MF 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Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_simple_cluster.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/toppic_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_simple_cluster.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_simple_cluster.cpp.o.d -o 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-I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/feature/sample_feature_reader.cpp.o -MF CMakeFiles/topmg.dir/src/ms/feature/sample_feature_reader.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/feature/sample_feature_reader.cpp.o -c /<>/src/ms/feature/sample_feature_reader.cpp [ 38%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_frac_merge.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_frac_merge.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_frac_merge.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_frac_merge.cpp.o -c /<>/src/ms/spec/msalign_frac_merge.cpp [ 38%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/fasta_seq.cpp.o 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CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_thread_merge.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_thread_merge.cpp.o -MF 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-mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/fasta_sub_seq.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/fasta_sub_seq.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/fasta_sub_seq.cpp.o -c /<>/src/seq/fasta_sub_seq.cpp [ 38%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_util.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_util.cpp.o -c /<>/src/ms/spec/msalign_util.cpp [ 38%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/fasta_sub_util.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/fasta_sub_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/fasta_sub_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/fasta_sub_util.cpp.o -c /<>/src/seq/fasta_sub_util.cpp [ 38%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_writer.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_writer.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_writer.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_writer.cpp.o -c /<>/src/ms/spec/msalign_writer.cpp [ 39%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/fasta_util.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/fasta_util.cpp.o.d -o 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-I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_coverage.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_coverage.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_coverage.cpp.o -c /<>/src/prsm/prsm_coverage.cpp [ 43%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/match_env_util.cpp.o [ 44%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_match_table_writer.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/env/match_env_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/env/match_env_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/env/match_env_util.cpp.o -c /<>/src/ms/env/match_env_util.cpp /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_match_table_writer.cpp.o -c /<>/src/prsm/prsm_match_table_writer.cpp In file included from /<>/src/prsm/prsm_match_table_writer.cpp:23: /<>/src/prsm/prsm_match_table_writer.hpp: In constructor ‘toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)’: /<>/src/prsm/prsm_match_table_writer.hpp:51:8: warning: ‘toppic::PrsmMatchTableWriter::write_multiple_matches_’ will be initialized after [-Wreorder] 51 | bool write_multiple_matches_; | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/src/prsm/prsm_match_table_writer.hpp:47:15: warning: ‘std::string toppic::PrsmMatchTableWriter::output_file_ext_’ [-Wreorder] 47 | std::string output_file_ext_; | ^~~~~~~~~~~~~~~~ /<>/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, | ^~~~~~~~~~~~~~~~~~~~ [ 44%] Building CXX object CMakeFiles/toppic.dir/src/filter/diag/diag_filter.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/toppic_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/diag/diag_filter.cpp.o -MF 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-fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/env/match_env_writer.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/env/match_env_writer.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/env/match_env_writer.cpp.o -c /<>/src/ms/env/match_env_writer.cpp [ 44%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/prec_env.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/env/prec_env.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/env/prec_env.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/env/prec_env.cpp.o -c /<>/src/ms/env/prec_env.cpp [ 44%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_prob.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_prob.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_prob.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_prob.cpp.o -c /<>/src/prsm/prsm_prob.cpp [ 44%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_cutoff_selector.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmg_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_cutoff_selector.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_cutoff_selector.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_cutoff_selector.cpp.o -c /<>/src/prsm/prsm_cutoff_selector.cpp [ 44%] Building CXX object CMakeFiles/toppic.dir/src/filter/diag/diag_filter_processor.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/toppic_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/diag/diag_filter_processor.cpp.o -MF CMakeFiles/toppic.dir/src/filter/diag/diag_filter_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/diag/diag_filter_processor.cpp.o -c /<>/src/filter/diag/diag_filter_processor.cpp [ 44%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/real_env.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/env/real_env.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/env/real_env.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/env/real_env.cpp.o -c /<>/src/ms/env/real_env.cpp [ 44%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_reader.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_reader.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_reader.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_reader.cpp.o -c /<>/src/prsm/prsm_reader.cpp [ 44%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_dia_selector.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmg_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_dia_selector.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_dia_selector.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_dia_selector.cpp.o -c /<>/src/prsm/prsm_dia_selector.cpp [ 44%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/factory/extend_ms_factory.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/factory/extend_ms_factory.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/factory/extend_ms_factory.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/factory/extend_ms_factory.cpp.o -c /<>/src/ms/factory/extend_ms_factory.cpp [ 44%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_reader_util.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_reader_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_reader_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_reader_util.cpp.o -c /<>/src/prsm/prsm_reader_util.cpp [ 44%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/factory/extend_ms_util.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/factory/extend_ms_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/factory/extend_ms_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/factory/extend_ms_util.cpp.o -c /<>/src/ms/factory/extend_ms_util.cpp [ 44%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_fdr.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmg_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_fdr.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_fdr.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_fdr.cpp.o -c /<>/src/prsm/prsm_fdr.cpp [ 44%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_sample_merge.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_sample_merge.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_sample_merge.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_sample_merge.cpp.o -c /<>/src/prsm/prsm_sample_merge.cpp [ 44%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/factory/prm_ms_factory.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/factory/prm_ms_factory.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/factory/prm_ms_factory.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/factory/prm_ms_factory.cpp.o -c /<>/src/ms/factory/prm_ms_factory.cpp [ 44%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_feature_cluster.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmg_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_feature_cluster.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_feature_cluster.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_feature_cluster.cpp.o -c /<>/src/prsm/prsm_feature_cluster.cpp [ 44%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_simple_cluster.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_simple_cluster.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_simple_cluster.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_simple_cluster.cpp.o -c /<>/src/prsm/prsm_simple_cluster.cpp [ 44%] Building CXX object CMakeFiles/toppic.dir/src/filter/index/diag_index.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/toppic_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/index/diag_index.cpp.o -MF CMakeFiles/toppic.dir/src/filter/index/diag_index.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/index/diag_index.cpp.o -c /<>/src/filter/index/diag_index.cpp [ 44%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/factory/prm_ms_util.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/factory/prm_ms_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/factory/prm_ms_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/factory/prm_ms_util.cpp.o -c /<>/src/ms/factory/prm_ms_util.cpp [ 44%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_form_filter.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmg_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_form_filter.cpp.o -c /<>/src/prsm/prsm_form_filter.cpp [ 44%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_stat.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_stat.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_stat.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_stat.cpp.o -c /<>/src/prsm/prsm_stat.cpp [ 44%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/factory/prm_peak_factory.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/factory/prm_peak_factory.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/factory/prm_peak_factory.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/factory/prm_peak_factory.cpp.o -c /<>/src/ms/factory/prm_peak_factory.cpp [ 44%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o -c /<>/src/ms/factory/spectrum_set_factory.cpp [ 44%] Building CXX object CMakeFiles/toppic.dir/src/filter/index/one_ptm_index.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/toppic_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/index/one_ptm_index.cpp.o -MF CMakeFiles/toppic.dir/src/filter/index/one_ptm_index.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/index/one_ptm_index.cpp.o -c /<>/src/filter/index/one_ptm_index.cpp [ 44%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_match_table_writer.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmg_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_match_table_writer.cpp.o -c /<>/src/prsm/prsm_match_table_writer.cpp In file included from /<>/src/prsm/prsm_match_table_writer.cpp:23: /<>/src/prsm/prsm_match_table_writer.hpp: In constructor ‘toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)’: /<>/src/prsm/prsm_match_table_writer.hpp:51:8: warning: ‘toppic::PrsmMatchTableWriter::write_multiple_matches_’ will be initialized after [-Wreorder] 51 | bool write_multiple_matches_; | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/src/prsm/prsm_match_table_writer.hpp:47:15: warning: ‘std::string toppic::PrsmMatchTableWriter::output_file_ext_’ [-Wreorder] 47 | std::string output_file_ext_; | ^~~~~~~~~~~~~~~~ /<>/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, | ^~~~~~~~~~~~~~~~~~~~ [ 44%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/feature_merge.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/feature/feature_merge.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/feature/feature_merge.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/feature/feature_merge.cpp.o -c /<>/src/ms/feature/feature_merge.cpp [ 44%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_str.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_str.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_str.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_str.cpp.o -c /<>/src/prsm/prsm_str.cpp [ 44%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature.cpp.o -c /<>/src/ms/feature/frac_feature.cpp [ 44%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_prob.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmg_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_prob.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_prob.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_prob.cpp.o -c /<>/src/prsm/prsm_prob.cpp [ 44%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o -c /<>/src/ms/feature/frac_feature_cluster.cpp [ 45%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_reader.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmg_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_reader.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_reader.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_reader.cpp.o -c /<>/src/prsm/prsm_reader.cpp [ 45%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature_reader.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature_reader.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature_reader.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature_reader.cpp.o -c /<>/src/ms/feature/frac_feature_reader.cpp [ 45%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_str_merge.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_str_merge.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_str_merge.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_str_merge.cpp.o -c /<>/src/prsm/prsm_str_merge.cpp [ 45%] Building CXX object CMakeFiles/toppic.dir/src/filter/index/zero_ptm_index.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/toppic_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/index/zero_ptm_index.cpp.o -MF CMakeFiles/toppic.dir/src/filter/index/zero_ptm_index.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/index/zero_ptm_index.cpp.o -c /<>/src/filter/index/zero_ptm_index.cpp [ 45%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_reader_util.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmg_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_reader_util.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_reader_util.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_reader_util.cpp.o -c /<>/src/prsm/prsm_reader_util.cpp [ 45%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature_writer.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature_writer.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature_writer.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature_writer.cpp.o -c /<>/src/ms/feature/frac_feature_writer.cpp [ 45%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_sample_merge.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmg_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_sample_merge.cpp.o -MF 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[ 50%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/index/zero_ptm_index.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/index/zero_ptm_index.cpp.o -MF 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-flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_form_filter.cpp.o -c /<>/src/prsm/prsm_form_filter.cpp [ 50%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/massmatch/mass_match_factory.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/massmatch/mass_match_factory.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/massmatch/mass_match_factory.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/massmatch/mass_match_factory.cpp.o -c /<>/src/filter/massmatch/mass_match_factory.cpp [ 50%] Building CXX object CMakeFiles/toppic.dir/src/search/oneptmsearch/dp_pair.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/toppic_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/oneptmsearch/dp_pair.cpp.o -MF CMakeFiles/toppic.dir/src/search/oneptmsearch/dp_pair.cpp.o.d -o CMakeFiles/toppic.dir/src/search/oneptmsearch/dp_pair.cpp.o -c /<>/src/search/oneptmsearch/dp_pair.cpp [ 50%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_match_table_writer.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_match_table_writer.cpp.o -c /<>/src/prsm/prsm_match_table_writer.cpp In file included from /<>/src/prsm/prsm_match_table_writer.cpp:23: /<>/src/prsm/prsm_match_table_writer.hpp: In constructor ‘toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)’: /<>/src/prsm/prsm_match_table_writer.hpp:51:8: warning: ‘toppic::PrsmMatchTableWriter::write_multiple_matches_’ will be initialized after [-Wreorder] 51 | bool write_multiple_matches_; | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/src/prsm/prsm_match_table_writer.hpp:47:15: warning: ‘std::string toppic::PrsmMatchTableWriter::output_file_ext_’ [-Wreorder] 47 | std::string output_file_ext_; | ^~~~~~~~~~~~~~~~ /<>/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, | ^~~~~~~~~~~~~~~~~~~~ [ 50%] Building CXX object CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_search_processor.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/toppic_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_search_processor.cpp.o -MF CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_search_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_search_processor.cpp.o -c /<>/src/search/oneptmsearch/one_ptm_search_processor.cpp [ 50%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/massmatch/mass_match_util.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/massmatch/mass_match_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/massmatch/mass_match_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/massmatch/mass_match_util.cpp.o -c /<>/src/filter/massmatch/mass_match_util.cpp [ 50%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/massmatch/prot_candidate.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/massmatch/prot_candidate.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/massmatch/prot_candidate.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/massmatch/prot_candidate.cpp.o -c /<>/src/filter/massmatch/prot_candidate.cpp [ 50%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_prob.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_prob.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_prob.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_prob.cpp.o -c /<>/src/prsm/prsm_prob.cpp [ 50%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/mng/diag_filter_mng.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/mng/diag_filter_mng.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/mng/diag_filter_mng.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/mng/diag_filter_mng.cpp.o -c /<>/src/filter/mng/diag_filter_mng.cpp [ 50%] Building CXX object CMakeFiles/topmg.dir/src/filter/index/zero_ptm_index.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmg_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/index/zero_ptm_index.cpp.o -MF CMakeFiles/topmg.dir/src/filter/index/zero_ptm_index.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/index/zero_ptm_index.cpp.o -c /<>/src/filter/index/zero_ptm_index.cpp [ 50%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/mng/index_file_name.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/mng/index_file_name.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/mng/index_file_name.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/mng/index_file_name.cpp.o -c /<>/src/filter/mng/index_file_name.cpp [ 50%] Building CXX object CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_slow_match.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/toppic_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_slow_match.cpp.o -MF CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_slow_match.cpp.o.d -o CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_slow_match.cpp.o -c /<>/src/search/oneptmsearch/one_ptm_slow_match.cpp [ 50%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_reader.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_reader.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_reader.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_reader.cpp.o -c /<>/src/prsm/prsm_reader.cpp [ 50%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/mng/one_ptm_filter_mng.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/mng/one_ptm_filter_mng.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/mng/one_ptm_filter_mng.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/mng/one_ptm_filter_mng.cpp.o -c /<>/src/filter/mng/one_ptm_filter_mng.cpp [ 50%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_reader_util.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer 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-I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/oneptmsearch/ps_align.cpp.o -MF CMakeFiles/toppic.dir/src/search/oneptmsearch/ps_align.cpp.o.d -o CMakeFiles/toppic.dir/src/search/oneptmsearch/ps_align.cpp.o -c /<>/src/search/oneptmsearch/ps_align.cpp [ 50%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_sample_merge.cpp.o /usr/bin/c++ 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-I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/mng/diag_filter_mng.cpp.o -MF CMakeFiles/topmg.dir/src/filter/mng/diag_filter_mng.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/mng/diag_filter_mng.cpp.o -c /<>/src/filter/mng/diag_filter_mng.cpp [ 52%] Building CXX object CMakeFiles/topmg.dir/src/filter/mng/index_file_name.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> 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std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 77 | std::random_shuffle(ori_res.begin(), ori_res.end()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/stat/mcmc/comp_pvalue_mcmc.cpp:17: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/stat/mcmc/comp_pvalue_mcmc.cpp:86:24: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 86 | std::random_shuffle(res_seq.begin(), res_seq.end()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, 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-fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/common/util/file_util.cpp.o -MF CMakeFiles/topdiff.dir/src/common/util/file_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/common/util/file_util.cpp.o -c /<>/src/common/util/file_util.cpp [ 61%] Building CXX object CMakeFiles/topmg_gui.dir/src/search/graph/spec_graph.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/search/graph/spec_graph.cpp.o -MF CMakeFiles/topmg_gui.dir/src/search/graph/spec_graph.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/search/graph/spec_graph.cpp.o -c /<>/src/search/graph/spec_graph.cpp /<>/src/common/util/file_util.cpp: In function ‘void toppic::file_util::copyFile(const std::string&, const std::string&, bool)’: /<>/src/common/util/file_util.cpp:165:18: warning: ‘bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)’ is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/filesystem.hpp:19, from /<>/src/common/util/file_util.cpp:24: /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ /<>/src/common/util/file_util.cpp:168:18: warning: ‘bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)’ is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 168 | fs::copy_file(from_path, to_path, fs::copy_option::fail_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ [ 61%] Building CXX object CMakeFiles/topmg.dir/src/visual/json_transformer.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> 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-I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/db_block.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/db_block.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/db_block.cpp.o -c /<>/src/seq/db_block.cpp [ 61%] Building CXX object CMakeFiles/topdiff.dir/src/seq/fasta_index_reader.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topdiff_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/fasta_index_reader.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/fasta_index_reader.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/fasta_index_reader.cpp.o -c /<>/src/seq/fasta_index_reader.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 61%] Built target toppic_gui make -f CMakeFiles/topdiff_gui.dir/build.make 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-I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/fasta_sub_seq.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/fasta_sub_seq.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/fasta_sub_seq.cpp.o -c /<>/src/seq/fasta_sub_seq.cpp [ 62%] Building CXX object CMakeFiles/topdiff.dir/src/seq/fasta_sub_util.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topdiff_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/fasta_sub_util.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/fasta_sub_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/fasta_sub_util.cpp.o -c /<>/src/seq/fasta_sub_util.cpp [ 62%] Building CXX object CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_align_processor.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_align_processor.cpp.o -MF 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-Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/fasta_util.cpp.o -c /<>/src/seq/fasta_util.cpp [ 62%] Building CXX object CMakeFiles/topdiff_gui.dir/src/gui/topdiff/topdiff_gui.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/gui/topdiff/topdiff_gui.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/gui/topdiff/topdiff_gui.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/gui/topdiff/topdiff_gui.cpp.o -c /<>/src/gui/topdiff/topdiff_gui.cpp /<>/src/seq/fasta_util.cpp: In function ‘void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)’: /<>/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of ‘int fai_build(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 154 | fai_build(db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /<>/src/seq/fasta_util.cpp: In function ‘void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)’: /<>/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of ‘int fai_build(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 202 | fai_build(new_db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gui/topdiff/topdiff_gui.cpp: In function ‘int main(int, char**)’: /<>/src/gui/topdiff/topdiff_gui.cpp:40:43: warning: ‘const QRect QDesktopWidget::availableGeometry(int) const’ is deprecated: Use QGuiApplication::screens() [-Wdeprecated-declarations] 40 | QRect deskRect = desk->availableGeometry(); | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QDesktopWidget:1, from /<>/src/gui/topdiff/topdiff_gui.cpp:19: /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qdesktopwidget.h:88:67: note: declared here 88 | QT_DEPRECATED_X("Use QGuiApplication::screens()") const QRect availableGeometry(int screen = -1) const; | ^~~~~~~~~~~~~~~~~ [ 62%] Building CXX object CMakeFiles/topdiff.dir/src/seq/local_anno.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topdiff_autogen/include 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-I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/stat/mcmc/comp_pvalue_mcmc.cpp.o -MF CMakeFiles/topmg_gui.dir/src/stat/mcmc/comp_pvalue_mcmc.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/stat/mcmc/comp_pvalue_mcmc.cpp.o -c /<>/src/stat/mcmc/comp_pvalue_mcmc.cpp [ 62%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/base/ion.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> 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CMakeFiles/topdiff_gui.dir/src/common/base/ion_type.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/base/ion_type.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/base/ion_type.cpp.o.d -o 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fs::copy_option::overwrite_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/filesystem.hpp:19, from /<>/src/common/util/file_util.cpp:24: /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ /<>/src/common/util/file_util.cpp:168:18: warning: ‘bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)’ is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 168 | fs::copy_file(from_path, to_path, fs::copy_option::fail_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ [ 66%] Building CXX object CMakeFiles/topmg_gui.dir/src/visual/anno_xml_util.cpp.o 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CMakeFiles/topmg_gui.dir/src/search/graph/proteo_graph_reader.cpp.o CMakeFiles/topmg_gui.dir/src/search/graph/spec_graph.cpp.o CMakeFiles/topmg_gui.dir/src/search/graph/spec_graph_reader.cpp.o CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_align.cpp.o CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_align_processor.cpp.o CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_dp_node.cpp.o CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_post_processor.cpp.o CMakeFiles/topmg_gui.dir/src/stat/count/count_test_num.cpp.o CMakeFiles/topmg_gui.dir/src/stat/count/count_util.cpp.o CMakeFiles/topmg_gui.dir/src/stat/mcmc/comp_pvalue_mcmc.cpp.o CMakeFiles/topmg_gui.dir/src/stat/mcmc/mcmc_dpr_processor.cpp.o CMakeFiles/topmg_gui.dir/src/stat/mcmc/mcmc_mass_table_util.cpp.o CMakeFiles/topmg_gui.dir/src/visual/anno_cleavage.cpp.o CMakeFiles/topmg_gui.dir/src/visual/anno_file_list.cpp.o CMakeFiles/topmg_gui.dir/src/visual/anno_mass_shift.cpp.o CMakeFiles/topmg_gui.dir/src/visual/anno_proteoform.cpp.o CMakeFiles/topmg_gui.dir/src/visual/anno_prsm.cpp.o CMakeFiles/topmg_gui.dir/src/visual/anno_ptm.cpp.o CMakeFiles/topmg_gui.dir/src/visual/anno_ptm_position.cpp.o CMakeFiles/topmg_gui.dir/src/visual/anno_residue.cpp.o CMakeFiles/topmg_gui.dir/src/visual/anno_xml_util.cpp.o CMakeFiles/topmg_gui.dir/src/visual/json_transformer.cpp.o CMakeFiles/topmg_gui.dir/src/visual/xml_generator.cpp.o CMakeFiles/topmg_gui.dir/src/gui/util/run_exe.cpp.o CMakeFiles/topmg_gui.dir/topmg_gui_autogen/OBJ2MOUSMQ/qrc_icon.cpp.o -o /<>/bin/topmg_gui -lQt5Widgets -lQt5Core -lQt5Gui -lxerces-c -lboost_program_options -lboost_filesystem -lboost_system -lboost_serialization -lboost_thread -lpthread -lz -lhts [ 69%] Building CXX object CMakeFiles/topdiff.dir/src/ms/feature/sample_feature_reader.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topdiff_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/feature/sample_feature_reader.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/feature/sample_feature_reader.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/feature/sample_feature_reader.cpp.o -c /<>/src/ms/feature/sample_feature_reader.cpp [ 69%] Building CXX object CMakeFiles/topmerge.dir/src/common/util/file_util.cpp.o /usr/bin/c++ 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69%] Building CXX object CMakeFiles/topdiff.dir/src/ms/feature/sample_feature_writer.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topdiff_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/feature/sample_feature_writer.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/feature/sample_feature_writer.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/feature/sample_feature_writer.cpp.o -c /<>/src/ms/feature/sample_feature_writer.cpp [ 69%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/fasta_sub_seq.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/fasta_sub_seq.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/fasta_sub_seq.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/fasta_sub_seq.cpp.o -c /<>/src/seq/fasta_sub_seq.cpp /<>/src/common/util/file_util.cpp: In function ‘void toppic::file_util::copyFile(const std::string&, const std::string&, bool)’: /<>/src/common/util/file_util.cpp:165:18: warning: ‘bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)’ is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/filesystem.hpp:19, from /<>/src/common/util/file_util.cpp:24: /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ /<>/src/common/util/file_util.cpp:168:18: warning: ‘bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)’ is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 168 | fs::copy_file(from_path, to_path, fs::copy_option::fail_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ [ 70%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/fasta_sub_util.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/fasta_sub_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/fasta_sub_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/fasta_sub_util.cpp.o -c /<>/src/seq/fasta_sub_util.cpp [ 70%] Building CXX object CMakeFiles/topdiff.dir/src/ms/feature/savitzky_golay.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topdiff_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/feature/savitzky_golay.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/feature/savitzky_golay.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/feature/savitzky_golay.cpp.o -c /<>/src/ms/feature/savitzky_golay.cpp [ 70%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/fasta_util.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/fasta_util.cpp.o -c /<>/src/seq/fasta_util.cpp /<>/src/seq/fasta_util.cpp: In function ‘void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)’: /<>/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of ‘int fai_build(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 154 | fai_build(db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /<>/src/seq/fasta_util.cpp: In function ‘void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)’: /<>/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of ‘int fai_build(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 202 | fai_build(new_db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 70%] Building CXX object CMakeFiles/topmerge.dir/src/common/util/logger.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmerge_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets 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-I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/para/prsm_para.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/para/prsm_para.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/para/prsm_para.cpp.o -c /<>/src/para/prsm_para.cpp [ 71%] Building CXX object CMakeFiles/topmerge.dir/src/seq/fasta_sub_util.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmerge_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/seq/fasta_sub_util.cpp.o -MF CMakeFiles/topmerge.dir/src/seq/fasta_sub_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/seq/fasta_sub_util.cpp.o -c /<>/src/seq/fasta_sub_util.cpp [ 71%] Building CXX object CMakeFiles/topdiff.dir/src/ms/spec/peak.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topdiff_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/spec/peak.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/spec/peak.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/spec/peak.cpp.o -c /<>/src/ms/spec/peak.cpp [ 71%] Building CXX object CMakeFiles/topmerge.dir/src/seq/fasta_util.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmerge_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/topmerge.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/seq/fasta_util.cpp.o -c /<>/src/seq/fasta_util.cpp [ 72%] Building CXX object CMakeFiles/topdiff.dir/src/ms/spec/peak_util.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topdiff_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/spec/peak_util.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/spec/peak_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/spec/peak_util.cpp.o -c /<>/src/ms/spec/peak_util.cpp [ 72%] Building CXX object CMakeFiles/topdiff.dir/src/ms/spec/prm_peak.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topdiff_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/spec/prm_peak.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/spec/prm_peak.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/spec/prm_peak.cpp.o -c /<>/src/ms/spec/prm_peak.cpp /<>/src/seq/fasta_util.cpp: In function ‘void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)’: /<>/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of ‘int fai_build(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 154 | fai_build(db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /<>/src/seq/fasta_util.cpp: In function ‘void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)’: /<>/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of ‘int fai_build(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 202 | fai_build(new_db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 72%] Building CXX object 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-I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/peak_ion_pair_util.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/peak_ion_pair_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/peak_ion_pair_util.cpp.o -c /<>/src/prsm/peak_ion_pair_util.cpp [ 72%] Building CXX object CMakeFiles/topmerge_gui.dir/src/gui/topmerge/topmerge_gui.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> 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-I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/base/base_data.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/base/base_data.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/base/base_data.cpp.o -c /<>/src/common/base/base_data.cpp [ 74%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_match_table_writer.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu 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74%] Building CXX object CMakeFiles/topmerge.dir/src/ms/env/match_env_util.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmerge_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/env/match_env_util.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/env/match_env_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/env/match_env_util.cpp.o -c /<>/src/ms/env/match_env_util.cpp [ 74%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/ion.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/base/ion.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/base/ion.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/base/ion.cpp.o -c /<>/src/common/base/ion.cpp In file included from /<>/src/prsm/prsm_match_table_writer.cpp:23: /<>/src/prsm/prsm_match_table_writer.hpp: In constructor ‘toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)’: /<>/src/prsm/prsm_match_table_writer.hpp:51:8: warning: ‘toppic::PrsmMatchTableWriter::write_multiple_matches_’ will be initialized after [-Wreorder] 51 | bool write_multiple_matches_; | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/src/prsm/prsm_match_table_writer.hpp:47:15: warning: ‘std::string toppic::PrsmMatchTableWriter::output_file_ext_’ [-Wreorder] 47 | std::string output_file_ext_; | ^~~~~~~~~~~~~~~~ /<>/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, | ^~~~~~~~~~~~~~~~~~~~ [ 74%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/ion_type.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT 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-Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/base/ion_type_base.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/base/ion_type_base.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/base/ion_type_base.cpp.o -c /<>/src/common/base/ion_type_base.cpp [ 74%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/feature/frac_feature.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/feature/frac_feature.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/feature/frac_feature.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/feature/frac_feature.cpp.o -c /<>/src/ms/feature/frac_feature.cpp [ 74%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/mod.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer 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-I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o -c /<>/src/ms/feature/frac_feature_cluster.cpp [ 74%] Building CXX object CMakeFiles/topmerge.dir/src/ms/env/match_env_writer.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmerge_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/env/match_env_writer.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/env/match_env_writer.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/env/match_env_writer.cpp.o -c /<>/src/ms/env/match_env_writer.cpp [ 74%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/mod_base.cpp.o /usr/bin/c++ 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CMakeFiles/topmerge_gui.dir/src/common/util/file_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/util/file_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/util/file_util.cpp.o -c /<>/src/common/util/file_util.cpp [ 78%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/deconv_json_merge.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/deconv_json_merge.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/deconv_json_merge.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/deconv_json_merge.cpp.o -c /<>/src/ms/spec/deconv_json_merge.cpp /<>/src/common/util/file_util.cpp: In function ‘void toppic::file_util::copyFile(const std::string&, const std::string&, bool)’: /<>/src/common/util/file_util.cpp:165:18: warning: ‘bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)’ is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/filesystem.hpp:19, from /<>/src/common/util/file_util.cpp:24: /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ /<>/src/common/util/file_util.cpp:168:18: warning: ‘bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)’ is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 168 | fs::copy_file(from_path, to_path, fs::copy_option::fail_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ [ 78%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_util.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topdiff_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets 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-I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/theo_peak.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/theo_peak.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/theo_peak.cpp.o -c /<>/src/ms/spec/theo_peak.cpp [ 80%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/expected_value.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/expected_value.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/expected_value.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/expected_value.cpp.o -c /<>/src/prsm/expected_value.cpp [ 80%] Building CXX object CMakeFiles/topmerge.dir/src/ms/spec/deconv_json_merge.cpp.o 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/<>/src/ms/spec/deconv_json_merge.cpp [ 80%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/peak_ion_pair.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/peak_ion_pair.cpp.o -MF 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-I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/fasta_util.cpp.o -c /<>/src/seq/fasta_util.cpp [ 80%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/peak_ion_pair_util.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/peak_ion_pair_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/peak_ion_pair_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/peak_ion_pair_util.cpp.o -c /<>/src/prsm/peak_ion_pair_util.cpp [ 80%] Building CXX object CMakeFiles/topmerge.dir/src/ms/spec/deconv_peak.cpp.o /<>/src/seq/fasta_util.cpp: In function ‘void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)’: /<>/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of ‘int fai_build(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 154 | fai_build(db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmerge_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 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-I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/simple_prsm_util.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/simple_prsm_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_util.cpp.o -c /<>/src/prsm/simple_prsm_util.cpp [ 80%] Building CXX object CMakeFiles/topmerge.dir/src/ms/spec/env_peak.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmerge_autogen/include -I/<>/src 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-I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_form_filter.cpp.o -c /<>/src/prsm/prsm_form_filter.cpp [ 83%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/env/env_base.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/env/env_base.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/env/env_base.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/env/env_base.cpp.o -c /<>/src/ms/env/env_base.cpp [ 83%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_match_table_writer.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_match_table_writer.cpp.o -c /<>/src/prsm/prsm_match_table_writer.cpp [ 83%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/env/env_detect.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/env/env_detect.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/env/env_detect.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/env/env_detect.cpp.o -c /<>/src/ms/env/env_detect.cpp In file included from /<>/src/prsm/prsm_match_table_writer.cpp:23: /<>/src/prsm/prsm_match_table_writer.hpp: In constructor ‘toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)’: /<>/src/prsm/prsm_match_table_writer.hpp:51:8: warning: ‘toppic::PrsmMatchTableWriter::write_multiple_matches_’ will be initialized after [-Wreorder] 51 | bool write_multiple_matches_; | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/src/prsm/prsm_match_table_writer.hpp:47:15: warning: ‘std::string toppic::PrsmMatchTableWriter::output_file_ext_’ [-Wreorder] 47 | std::string output_file_ext_; | ^~~~~~~~~~~~~~~~ /<>/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, | ^~~~~~~~~~~~~~~~~~~~ [ 83%] Building CXX object CMakeFiles/topmerge.dir/src/stat/local/local_util.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmerge_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/stat/local/local_util.cpp.o -MF CMakeFiles/topmerge.dir/src/stat/local/local_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/stat/local/local_util.cpp.o -c /<>/src/stat/local/local_util.cpp [ 83%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/env/env_filter.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/env/env_filter.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/env/env_filter.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/env/env_filter.cpp.o -c /<>/src/ms/env/env_filter.cpp [ 83%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/env/env_para.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 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-fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/env/env_peak_pair.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/env/env_peak_pair.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/env/env_peak_pair.cpp.o -c /<>/src/ms/env/env_peak_pair.cpp [ 83%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/expected_value.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmerge_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/expected_value.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/expected_value.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/expected_value.cpp.o -c /<>/src/prsm/expected_value.cpp [ 83%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_prob.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_prob.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_prob.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_prob.cpp.o -c /<>/src/prsm/prsm_prob.cpp [ 83%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/env/env_rescore.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/env/env_rescore.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/env/env_rescore.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/env/env_rescore.cpp.o -c /<>/src/ms/env/env_rescore.cpp [ 83%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/peak_ion_pair.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmerge_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/peak_ion_pair.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/peak_ion_pair.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/peak_ion_pair.cpp.o -c /<>/src/prsm/peak_ion_pair.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 83%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/env/envelope.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/env/envelope.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/env/envelope.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/env/envelope.cpp.o -c /<>/src/ms/env/envelope.cpp [ 83%] Built target topdiff [ 83%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/env/match_env.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/env/match_env.cpp.o -MF 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-I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_feature.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_feature.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_feature.cpp.o -c /<>/src/ms/feature/frac_feature.cpp [ 86%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_form_filter.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmerge_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_form_filter.cpp.o -c /<>/src/prsm/prsm_form_filter.cpp [ 86%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_str_merge.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_str_merge.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_str_merge.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_str_merge.cpp.o -c /<>/src/prsm/prsm_str_merge.cpp [ 86%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o -c /<>/src/ms/feature/frac_feature_cluster.cpp [ 86%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_match_table_writer.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmerge_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_match_table_writer.cpp.o -c /<>/src/prsm/prsm_match_table_writer.cpp make -f CMakeFiles/topconvert.dir/build.make CMakeFiles/topconvert.dir/depend In file included from /<>/src/prsm/prsm_match_table_writer.cpp:23: /<>/src/prsm/prsm_match_table_writer.hpp: In constructor ‘toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)’: /<>/src/prsm/prsm_match_table_writer.hpp:51:8: warning: ‘toppic::PrsmMatchTableWriter::write_multiple_matches_’ will be initialized after [-Wreorder] 51 | bool write_multiple_matches_; | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/src/prsm/prsm_match_table_writer.hpp:47:15: warning: ‘std::string toppic::PrsmMatchTableWriter::output_file_ext_’ [-Wreorder] 47 | std::string output_file_ext_; | ^~~~~~~~~~~~~~~~ /<>/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, | ^~~~~~~~~~~~~~~~~~~~ make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/CMakeFiles/topconvert.dir/DependInfo.cmake "--color=" Dependencies file "topconvert_autogen/deps" is newer than depends file "/<>/obj-x86_64-linux-gnu/CMakeFiles/topconvert.dir/compiler_depend.internal". 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-D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/topconvert_autogen/mocs_compilation.cpp.o -MF CMakeFiles/topconvert.dir/topconvert_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/topconvert.dir/topconvert_autogen/mocs_compilation.cpp.o -c /<>/obj-x86_64-linux-gnu/topconvert_autogen/mocs_compilation.cpp [ 86%] Building CXX object CMakeFiles/topconvert.dir/src/console/topconvert.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topconvert_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/console/topconvert.cpp.o -MF CMakeFiles/topconvert.dir/src/console/topconvert.cpp.o.d -o CMakeFiles/topconvert.dir/src/console/topconvert.cpp.o -c /<>/src/console/topconvert.cpp [ 86%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_feature_reader.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_feature_reader.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_feature_reader.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_feature_reader.cpp.o -c /<>/src/ms/feature/frac_feature_reader.cpp [ 86%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_table_writer.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_table_writer.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_table_writer.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_table_writer.cpp.o -c /<>/src/prsm/prsm_table_writer.cpp [ 86%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_feature_writer.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_feature_writer.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_feature_writer.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_feature_writer.cpp.o -c /<>/src/ms/feature/frac_feature_writer.cpp [ 86%] Building CXX object CMakeFiles/topconvert.dir/src/console/topconvert_process.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topconvert_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/visual/anno_ptm.cpp.o -MF CMakeFiles/topmerge.dir/src/visual/anno_ptm.cpp.o.d -o CMakeFiles/topmerge.dir/src/visual/anno_ptm.cpp.o -c /<>/src/visual/anno_ptm.cpp [ 92%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_dia_selector.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_dia_selector.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_dia_selector.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_dia_selector.cpp.o -c /<>/src/prsm/prsm_dia_selector.cpp [ 92%] Building CXX object CMakeFiles/topconvert.dir/src/seq/fasta_util.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topconvert_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/topconvert.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/seq/fasta_util.cpp.o -c /<>/src/seq/fasta_util.cpp /<>/src/seq/fasta_util.cpp: In function ‘void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)’: 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-I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/visual/json_transformer.cpp.o -MF CMakeFiles/topmerge.dir/src/visual/json_transformer.cpp.o.d -o CMakeFiles/topmerge.dir/src/visual/json_transformer.cpp.o -c /<>/src/visual/json_transformer.cpp [ 92%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_match_table_writer.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_match_table_writer.cpp.o -c /<>/src/prsm/prsm_match_table_writer.cpp In file included from /<>/src/prsm/prsm_match_table_writer.cpp:23: /<>/src/prsm/prsm_match_table_writer.hpp: In constructor ‘toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)’: /<>/src/prsm/prsm_match_table_writer.hpp:51:8: warning: ‘toppic::PrsmMatchTableWriter::write_multiple_matches_’ will be initialized after [-Wreorder] 51 | bool write_multiple_matches_; | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/src/prsm/prsm_match_table_writer.hpp:47:15: warning: ‘std::string toppic::PrsmMatchTableWriter::output_file_ext_’ [-Wreorder] 47 | std::string output_file_ext_; | ^~~~~~~~~~~~~~~~ /<>/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, | ^~~~~~~~~~~~~~~~~~~~ [ 92%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_prob.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/<>/src -I/<>/ext 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CMakeFiles/topconvert.dir/src/seq/proteoform_factory.cpp.o -c /<>/src/seq/proteoform_factory.cpp [ 92%] Building CXX object CMakeFiles/topmerge.dir/src/visual/xml_generator.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmerge_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT 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-fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_sample_merge.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_sample_merge.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_sample_merge.cpp.o -c /<>/src/prsm/prsm_sample_merge.cpp [ 92%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_simple_cluster.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. 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-I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_stat.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_stat.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_stat.cpp.o -c /<>/src/prsm/prsm_stat.cpp [ 93%] Building CXX object CMakeFiles/topconvert.dir/src/seq/proteoform_type.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topconvert_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/seq/proteoform_type.cpp.o -MF CMakeFiles/topconvert.dir/src/seq/proteoform_type.cpp.o.d -o CMakeFiles/topconvert.dir/src/seq/proteoform_type.cpp.o -c /<>/src/seq/proteoform_type.cpp [ 93%] Building CXX object CMakeFiles/topconvert.dir/src/seq/proteoform_util.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topconvert_autogen/include 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-I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/expected_value.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/expected_value.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/expected_value.cpp.o -c /<>/src/prsm/expected_value.cpp [ 98%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/peak_ion_pair.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topconvert_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 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-I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_fdr.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_fdr.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_fdr.cpp.o -c /<>/src/prsm/prsm_fdr.cpp [ 99%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_feature_cluster.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> 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CMakeFiles/topconvert.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_form_filter.cpp.o -c /<>/src/prsm/prsm_form_filter.cpp [ 99%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_match_table_writer.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topconvert_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_match_table_writer.cpp.o -c /<>/src/prsm/prsm_match_table_writer.cpp In file included from /<>/src/prsm/prsm_match_table_writer.cpp:23: /<>/src/prsm/prsm_match_table_writer.hpp: In constructor ‘toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)’: /<>/src/prsm/prsm_match_table_writer.hpp:51:8: warning: ‘toppic::PrsmMatchTableWriter::write_multiple_matches_’ will be initialized after [-Wreorder] 51 | bool write_multiple_matches_; | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/src/prsm/prsm_match_table_writer.hpp:47:15: warning: ‘std::string toppic::PrsmMatchTableWriter::output_file_ext_’ [-Wreorder] 47 | std::string output_file_ext_; | ^~~~~~~~~~~~~~~~ /<>/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, | ^~~~~~~~~~~~~~~~~~~~ [ 99%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_prob.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topconvert_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_reader_util.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_reader_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_reader_util.cpp.o -c /<>/src/prsm/prsm_reader_util.cpp [ 99%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_sample_merge.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topconvert_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite 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-I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_simple_cluster.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_simple_cluster.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_simple_cluster.cpp.o -c /<>/src/prsm/prsm_simple_cluster.cpp [ 99%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_stat.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> -I/<>/obj-x86_64-linux-gnu/topconvert_autogen/include -I/<>/src -I/<>/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/toppic-1.5.3+dfsg1-1build3 -Wdate-time -D_FORTIFY_SOURCE=3 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_stat.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_stat.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_stat.cpp.o -c /<>/src/prsm/prsm_stat.cpp [ 99%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_str.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu -I/<> 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/<>/debian/tmp/usr/share/toppic/topmsv/doc/visual/scripts/prettify/prettify.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/visual/scripts/linenumber.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/visual/prsmtohtml.js.html -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/visual/coordinates_util.js.html -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/visual/CalculatePrefixAndSuffixMass.html -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/visual/allProteins.js.html -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/visual/peakData.js.html -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/visual/generateSpectrumGraphs.js.html -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/visual/styles -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/visual/styles/jsdoc-default.css -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/visual/styles/prettify-tomorrow.css -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/visual/styles/prettify-jsdoc.css -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/prsm.docx -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/inspect -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/inspect/massshift.js.html -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/inspect/aminoaciddistribution.js.html -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/inspect/global.html -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/inspect/calculateEnvelopeIntensity.js.html -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/inspect/isotopes.js.html -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/inspect/calculateprefixandsuffixmass.js.html -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/inspect/commonFixedPtms.js.html -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/inspect/rectBGColor.html -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/inspect/matchedpeaks.js.html -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/inspect/checkIonCheckbox.js.html -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/inspect/MatchedPeaks.html -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/inspect/onclickandeventhandler.js.html -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/inspect/iontabledata.js.html -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/inspect/setvaluestohtml.js.html -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/inspect/GetMassTableOfSelectedIons.html -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/inspect/fonts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/inspect/fonts/OpenSans-Italic-webfont.woff -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/inspect/fonts/OpenSans-Light-webfont.eot -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/inspect/fonts/OpenSans-Italic-webfont.eot -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/inspect/fonts/OpenSans-Bold-webfont.woff -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/inspect/fonts/OpenSans-BoldItalic-webfont.woff -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/inspect/fonts/OpenSans-Italic-webfont.svg -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/inspect/fonts/OpenSans-Light-webfont.woff -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/inspect/fonts/OpenSans-Regular-webfont.woff -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/inspect/fonts/OpenSans-Bold-webfont.svg -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/inspect/fonts/OpenSans-Regular-webfont.svg -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/inspect/fonts/OpenSans-Regular-webfont.eot -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/inspect/fonts/OpenSans-Light-webfont.svg -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/inspect/fonts/OpenSans-LightItalic-webfont.eot -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/inspect/fonts/OpenSans-BoldItalic-webfont.svg -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/inspect/fonts/OpenSans-LightItalic-webfont.svg -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/inspect/fonts/OpenSans-LightItalic-webfont.woff -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/inspect/fonts/OpenSans-Bold-webfont.eot -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/inspect/fonts/OpenSans-BoldItalic-webfont.eot -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/inspect/SetValuesToHtml.html -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/inspect/getmasstableofselectedions.js.html -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/inspect/index.html -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/inspect/rectbackgroundcolor.js.html -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/inspect/helper.js.html -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/inspect/parseData.js.html -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/inspect/drawsvg.js.html -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/inspect/emassanddistribution.js.html -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/inspect/molecularformulae.js.html -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/inspect/scripts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/inspect/scripts/prettify -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/inspect/scripts/prettify/Apache-License-2.0.txt -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/inspect/scripts/prettify/lang-css.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/inspect/scripts/prettify/prettify.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/inspect/scripts/linenumber.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/inspect/UIHelper.html -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/inspect/MolecularFormulae.html -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/inspect/seqofexecution.js.html -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/inspect/CalculateEmassAndDistribution.html -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/inspect/Constants.html -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/inspect/coordinates_util.js.html -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/inspect/utilfunctions.js.html -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/inspect/constants.js.html -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/inspect/addIonsToGraph.js.html -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/inspect/styles -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/inspect/styles/jsdoc-default.css -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/inspect/styles/prettify-tomorrow.css -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/doc/inspect/styles/prettify-jsdoc.css -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/LICENSE -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/visual -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/visual/proteins.html -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/visual/proteoform.html -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/visual/js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/visual/js/proteoform -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/visual/js/proteoform/proteoform.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/visual/js/proteoform/on_load_proteoform.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/visual/js/proteoform/on_load_proteoform.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/visual/js/proteoform/proteoform.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/visual/js/prsm -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/visual/js/prsm/inspect.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/visual/js/prsm/button_action.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/visual/js/prsm/prsm_to_html.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/visual/js/prsm/on_load_prsm.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/visual/js/prsm/inspect.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/visual/js/prsm/prsm_to_html.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/visual/js/prsm/load_spectra.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/visual/js/prsm/on_load_prsm.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/visual/js/prsm/button_action.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/visual/js/prsm/load_spectra.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/visual/js/protein -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/visual/js/protein/on_load_protein.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/visual/js/protein/on_load_protein.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/visual/js/protein/protein.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/visual/js/protein/protein.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/visual/js/proteins -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/visual/js/proteins/on_load_proteins.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/visual/js/proteins/allProteins.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/visual/js/proteins/allProteins.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/visual/js/proteins/on_load_proteins.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/visual/js/spectrum -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/visual/js/spectrum/allSpectrum.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/visual/js/spectrum/allSpectrum.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/visual/js/spectrum/on_load_spectrum.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/visual/js/spectrum/on_load_spectrum.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/visual/css -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/visual/css/proteins.css -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/visual/css/prsm.css -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/visual/css/ms.css -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/visual/css/FreeMono.ttf -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/visual/ms.html -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/visual/prsm.html -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/visual/protein.html -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/package.json -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/canvas-toBlob -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/canvas-toBlob/canvas-toBlob.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/canvas-toBlob/README.md -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/canvas-toBlob/LICENSE.md -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/canvas-toBlob/package.json -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@fortawesome -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@fortawesome/fontawesome-free -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@fortawesome/fontawesome-free/webfonts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@fortawesome/fontawesome-free/webfonts/fa-brands-400.svg -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@fortawesome/fontawesome-free/webfonts/fa-brands-400.woff2 -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@fortawesome/fontawesome-free/webfonts/fa-regular-400.svg -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@fortawesome/fontawesome-free/webfonts/fa-regular-400.ttf -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@fortawesome/fontawesome-free/webfonts/fa-brands-400.ttf -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@fortawesome/fontawesome-free/webfonts/fa-solid-900.woff2 -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@fortawesome/fontawesome-free/webfonts/fa-solid-900.svg -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@fortawesome/fontawesome-free/webfonts/fa-regular-400.woff2 -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@fortawesome/fontawesome-free/webfonts/fa-solid-900.woff -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@fortawesome/fontawesome-free/webfonts/fa-solid-900.eot -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@fortawesome/fontawesome-free/webfonts/fa-brands-400.woff -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@fortawesome/fontawesome-free/webfonts/fa-solid-900.ttf -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@fortawesome/fontawesome-free/webfonts/fa-regular-400.eot -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@fortawesome/fontawesome-free/webfonts/fa-brands-400.eot -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@fortawesome/fontawesome-free/webfonts/fa-regular-400.woff -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@fortawesome/fontawesome-free/css -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@fortawesome/fontawesome-free/css/svg-with-js.min.css -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@fortawesome/fontawesome-free/css/solid.min.css -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@fortawesome/fontawesome-free/css/brands.css -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@fortawesome/fontawesome-free/css/regular.min.css -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@fortawesome/fontawesome-free/css/fontawesome.min.css -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@fortawesome/fontawesome-free/css/svg-with-js.css -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@fortawesome/fontawesome-free/css/solid.css -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@fortawesome/fontawesome-free/css/v4-shims.css -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@fortawesome/fontawesome-free/css/fontawesome.css -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@fortawesome/fontawesome-free/css/all.min.css -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@fortawesome/fontawesome-free/css/regular.css -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@fortawesome/fontawesome-free/css/all.css -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@fortawesome/fontawesome-free/css/v4-shims.min.css -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@fortawesome/fontawesome-free/css/brands.min.css -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@fortawesome/fontawesome-free/LICENSE.txt -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@fortawesome/fontawesome-free/package.json -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/file-saver -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/file-saver/dist -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/file-saver/dist/FileSaver.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/file-saver/dist/FileSaver.min.js.map -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/file-saver/dist/FileSaver.min.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/file-saver/README.md -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/file-saver/LICENSE.md -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/file-saver/CHANGELOG.md -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/file-saver/package.json -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/jquery-ui-dist -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/jquery-ui.theme.css -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/jquery-ui.min.css -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/jquery-ui.structure.css -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/index.html -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/external -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/external/jquery -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/external/jquery/jquery.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/jquery-ui.theme.min.css -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/jquery-ui.structure.min.css -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/README.md -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/images -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/images/ui-icons_777777_256x240.png -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/images/ui-icons_777620_256x240.png -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/images/ui-icons_ffffff_256x240.png -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/images/ui-icons_555555_256x240.png -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/images/ui-icons_444444_256x240.png -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/images/ui-icons_cc0000_256x240.png -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/LICENSE.txt -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/package.json -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/jquery-ui.min.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/jquery-ui.css -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/AUTHORS.txt -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/jquery-ui.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/bootstrap -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/bootstrap/dist -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/bootstrap/dist/js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/bootstrap/dist/js/bootstrap.js.map -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/bootstrap/dist/js/bootstrap.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/bootstrap/dist/js/bootstrap.min.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/bootstrap/dist/js/bootstrap.min.js.map -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/bootstrap/dist/css -- Installing: 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/<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@types/d3-format -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@types/d3-format/index.d.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@types/d3-format/README.md -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@types/d3-format/LICENSE -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@types/d3-format/package.json -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@types/d3-scale-chromatic -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@types/d3-scale-chromatic/index.d.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@types/d3-scale-chromatic/README.md -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@types/d3-scale-chromatic/LICENSE -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@types/d3-scale-chromatic/package.json -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@types/d3-geo -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@types/d3-geo/index.d.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@types/d3-geo/README.md -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@types/d3-geo/LICENSE -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@types/d3-geo/package.json -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@types/d3-transition -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@types/d3-transition/index.d.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@types/d3-transition/README.md -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@types/d3-transition/LICENSE -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@types/d3-transition/package.json -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@types/d3-dsv -- 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/<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@types/jquery/legacy.d.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@types/jquery/dist -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@types/jquery/dist/jquery.slim.d.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@types/jquery/JQuery.d.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@types/jquery/README.md -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@types/jquery/LICENSE -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@types/jquery/misc.d.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@types/jquery/package.json -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@types/jquery/JQueryStatic.d.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@types/d3-collection -- Installing: 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/<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@types/d3-force/package.json -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@types/d3-axis -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@types/d3-axis/index.d.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@types/d3-axis/README.md -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@types/d3-axis/LICENSE -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@types/d3-axis/package.json -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@types/d3-time -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@types/d3-time/index.d.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@types/d3-time/README.md -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@types/d3-time/LICENSE -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@types/d3-time/package.json -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@types/d3-selection -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@types/d3-selection/index.d.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@types/d3-selection/README.md -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@types/d3-selection/LICENSE -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@types/d3-selection/package.json -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@types/d3-quadtree -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@types/d3-quadtree/index.d.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@types/d3-quadtree/README.md -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@types/d3-quadtree/LICENSE -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@types/d3-quadtree/package.json -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@types/d3-contour -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@types/d3-contour/index.d.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@types/d3-contour/README.md -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@types/d3-contour/LICENSE -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@types/d3-contour/package.json -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@types/d3-hierarchy -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@types/d3-hierarchy/index.d.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@types/d3-hierarchy/README.md -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@types/d3-hierarchy/LICENSE -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/@types/d3-hierarchy/package.json -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/jquery -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/jquery/bower.json -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/jquery/dist -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/jquery/dist/jquery.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/jquery/dist/jquery.slim.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/jquery/dist/jquery.min.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/jquery/dist/jquery.min.map -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/jquery/dist/jquery.slim.min.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/jquery/dist/jquery.slim.min.map -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/jquery/external -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/jquery/external/sizzle -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/jquery/external/sizzle/dist -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/jquery/external/sizzle/dist/sizzle.min.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/jquery/external/sizzle/dist/sizzle.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/jquery/external/sizzle/dist/sizzle.min.map -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/jquery/external/sizzle/LICENSE.txt -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/jquery/README.md -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/jquery/LICENSE.txt -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/jquery/AUTHORS.txt -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/popper.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/popper.js/index.d.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/popper.js/dist -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/popper.js/dist/popper.min.js.map -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/popper.js/dist/popper-utils.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/popper.js/dist/popper.js.map -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/popper.js/dist/popper.min.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/popper.js/dist/popper-utils.min.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/popper.js/dist/popper-utils.js.map -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/popper.js/dist/popper-utils.min.js.map -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/popper.js/dist/popper.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/popper.js/dist/umd -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/popper.js/dist/umd/popper.min.js.map -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/popper.js/dist/umd/popper-utils.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/popper.js/dist/umd/popper.js.map -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/popper.js/dist/umd/popper.min.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/popper.js/dist/umd/popper-utils.min.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/popper.js/dist/umd/popper-utils.js.map -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/popper.js/dist/umd/popper-utils.min.js.map -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/popper.js/dist/umd/popper.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/popper.js/dist/umd/popper.js.flow -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/popper.js/dist/esm -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/popper.js/dist/esm/popper.min.js.map -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/popper.js/dist/esm/popper-utils.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/popper.js/dist/esm/popper.js.map -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/popper.js/dist/esm/popper.min.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/popper.js/dist/esm/popper-utils.min.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/popper.js/dist/esm/popper-utils.js.map -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/popper.js/dist/esm/popper-utils.min.js.map -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/popper.js/dist/esm/popper.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/popper.js/README.md -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/popper.js/index.js.flow -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/datatables.net -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/datatables.net/License.txt -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/datatables.net/Readme.md -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/datatables.net/js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/datatables.net/js/jquery.dataTables.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/datatables.net/js/jquery.dataTables.min.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/datatables.net/package.json -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/datatables.net-dt -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/datatables.net-dt/License.txt -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/datatables.net-dt/Readme.md -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/datatables.net-dt/js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/datatables.net-dt/js/dataTables.dataTables.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/datatables.net-dt/js/dataTables.dataTables.min.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/datatables.net-dt/css -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/datatables.net-dt/css/jquery.dataTables.min.css -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/datatables.net-dt/css/jquery.dataTables.css -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/datatables.net-dt/images -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/datatables.net-dt/images/sort_desc.png -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/datatables.net-dt/images/sort_both.png -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/datatables.net-dt/images/sort_asc.png -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/datatables.net-dt/images/sort_asc_disabled.png -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/datatables.net-dt/images/sort_desc_disabled.png -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules/datatables.net-dt/package.json -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/node_modules.sh -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/tsconfig.json -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/inspect -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/inspect/example -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/inspect/example/setLocalStorage.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/inspect/js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/inspect/js/controllers -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/inspect/js/controllers/index.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/inspect/js/controllers/seqofexecution.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/inspect/js/controllers/seqofexecution.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/inspect/js/controllers/index.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/inspect/js/views -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/inspect/js/views/massInteView.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/inspect/js/views/ionTableView.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/inspect/js/views/fixedPtmView.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/inspect/js/views/infoView.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/inspect/js/views/sequenceView.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/inspect/js/views/peakView.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/inspect/js/views/base.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/inspect/js/views/peakView.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/inspect/js/views/base.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/inspect/js/views/helperView.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/inspect/js/views/errorView.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/inspect/js/views/fixedPtmView.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/inspect/js/views/ionCheckBoxView.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/inspect/js/views/ionTableView.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/inspect/js/views/graphTabView.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/inspect/js/views/errorView.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/inspect/js/views/graphTabView.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/inspect/js/views/helperView.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/inspect/js/views/sequenceView.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/inspect/js/views/ionCheckBoxView.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/inspect/js/views/infoView.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/inspect/js/views/massInteView.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/inspect/js/models -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/inspect/js/models/calcMatchedPeaks.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/inspect/js/models/parseData.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/inspect/js/models/calcMatchedPeaks.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/inspect/js/models/parseData.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/inspect/help.html -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/inspect/spectrum.html -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/inspect/css -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/inspect/css/inspect.css -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/inspect/spectrum_no_nav.html -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/parse_json -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/parse_json/parse_proteoform.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/parse_json/parse_util.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/parse_json/parse_prsm.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/parse_json/parse_protein.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/distribution_calc -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/distribution_calc/molecular_formulae.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/distribution_calc/isotopes.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/distribution_calc/molecular_formulae.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/distribution_calc/emass_and_distribution.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/distribution_calc/README.MD -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/distribution_calc/example.html -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/distribution_calc/amino_acid_distribution.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/distribution_calc/amino_acid_distribution.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/distribution_calc/isotopes.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/proteoform -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/proteoform/protein_constant.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/proteoform/protein_constant.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/util -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/util/types.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/util/format_util.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/util/format_util.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/util/types.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/util/common_ptm_list.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/prsm_view -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/prsm_view/add_shift.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/prsm_view/prsm_para.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/prsm_view/example -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/prsm_view/example/prsm40.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/prsm_view/example/prsm96.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/prsm_view/example/example.html -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/prsm_view/prsm_data.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/prsm_view/prsm_view.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/prsm_view/draw_prsm.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/prsm_view/prsm_view.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/prsm_view/README.MD -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/prsm_view/prsm_data.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/prsm_view/add_shift.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/prsm_view/prsm_para.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/prsm_view/draw_prsm.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/save_image -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/save_image/save_prsm.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/save_image/save_image.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/save_image/save_prsm.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/save_image/save_spectrum.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/save_image/save_spectrum.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/save_image/util.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/inte_rt_graph -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/inte_rt_graph/inte_rt_graph.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/inte_rt_graph/inte_rt_graph.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/inte_rt_graph/README.MD -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/inte_rt_graph/example.html -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/prsm -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/prsm/matchedPeakEnvelopePair.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/prsm/prsm.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/prsm/matchedPeakEnvelopePair.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/prsm/prsm.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/data_table -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/data_table/example -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/data_table/example/prsm40.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/data_table/example/spectrum300.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/data_table/example/example.html -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/data_table/example/sample_ion_data.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/data_table/draw_table.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/data_table/draw_table.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/spectrum_view -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/spectrum_view/example -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/spectrum_view/example/sample_mono_peak_data.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/spectrum_view/example/sample_peak_data.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/spectrum_view/example/sample_proteoform.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/spectrum_view/example/sample_env_data.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/spectrum_view/example/example.html -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/spectrum_view/example/sample_ion_data.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/spectrum_view/spectrum_view.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/spectrum_view/images -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/spectrum_view/images/download.png -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/spectrum_view/images/png.png -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/spectrum_view/images/svg.png -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/spectrum_view/spectrum_view.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/spectrum_view/draw_spectrum.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/spectrum_view/draw_spectrum.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/spectrum_view/spectrum_parameter.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/spectrum_view/spectrum_parameter.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/README -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/shared -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/shared/css -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/shared/css/common.css -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/sequence -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/sequence/massShift.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/sequence/theoMass.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/sequence/proteoform.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/sequence/massShift.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/sequence/mod.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/sequence/theoMass.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/sequence/proteoform.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/sequence/mod.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/topmsv_nav_bar -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/topmsv_nav_bar/js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/topmsv_nav_bar/js/topmsv_nav_bar.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/topmsv_nav_bar/js/topmsv_nav_bar.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/topmsv_nav_bar/css -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/topmsv_nav_bar/css/topmsv_nav_bar.css -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/mass_spectrum -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/mass_spectrum/spectrumFunction.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/mass_spectrum/peak.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/mass_spectrum/ion.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/mass_spectrum/spectrum.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/mass_spectrum/ion.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/mass_spectrum/peak.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/mass_spectrum/envelope.ts -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/mass_spectrum/spectrum.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/mass_spectrum/envelope.js -- Installing: /<>/debian/tmp/usr/share/toppic/topmsv/common/mass_spectrum/spectrumFunction.ts -- Installing: /<>/debian/tmp/usr/share/toppic/envcnn_models -- Installing: /<>/debian/tmp/usr/share/toppic/envcnn_models/envcnn_2_block_model.json -- Installing: /<>/debian/tmp/usr/share/toppic/promex -- Installing: /<>/debian/tmp/usr/share/toppic/promex/XicCorrScore2.tsv -- Installing: /<>/debian/tmp/usr/share/toppic/promex/SummedCorrScore.tsv -- Installing: /<>/debian/tmp/usr/share/toppic/promex/SummedIntScore.tsv -- Installing: /<>/debian/tmp/usr/share/toppic/promex/XicCorrScore1.tsv -- Installing: /<>/debian/tmp/usr/share/toppic/promex/IntScore.tsv -- Installing: /<>/debian/tmp/usr/share/toppic/promex/CorrScore.tsv -- Installing: /<>/debian/tmp/usr/share/toppic/promex/DistScore.tsv -- Installing: /<>/debian/tmp/usr/share/toppic/promex/SummedDistScore.tsv -- Installing: /<>/debian/tmp/usr/share/toppic/promex/AbuScore.tsv make[1]: Leaving directory '/<>/obj-x86_64-linux-gnu' dh_install -O--buildsystem=cmake install -m0755 -d debian/toppic/usr/bin cp --reflink=auto -a ./debian/tmp/usr/bin/topconvert ./debian/tmp/usr/bin/topdiff ./debian/tmp/usr/bin/topdiff_gui ./debian/tmp/usr/bin/topfd ./debian/tmp/usr/bin/topfd_gui ./debian/tmp/usr/bin/topindex ./debian/tmp/usr/bin/topindex_gui ./debian/tmp/usr/bin/topmerge ./debian/tmp/usr/bin/topmerge_gui ./debian/tmp/usr/bin/topmg ./debian/tmp/usr/bin/topmg_gui ./debian/tmp/usr/bin/toppic ./debian/tmp/usr/bin/toppic_gui debian/toppic/usr/bin/ install -m0755 -d debian/toppic-common//usr/share cp --reflink=auto -a debian/tmp/usr/share/toppic debian/toppic-common//usr/share/ install -m0755 -d debian/toppic-common/usr/share/doc/toppic-common/ cp --reflink=auto -a ./doc/images ./doc/linux_build.md ./doc/msconvert_linux.md ./doc/records_of_the_gui.md ./doc/topfd_manual.md ./doc/topmg_manual.md ./doc/toppic_manual.md ./doc/tutorial.md ./doc/windows_build.md ./releases/example_files debian/toppic-common/usr/share/doc/toppic-common// install -m0755 -d debian/toppic-common/usr/share/toppic/local-source-copies/ cp --reflink=auto -a ./debian/local-source-copies/datatables.min.css ./debian/local-source-copies/datatables.min.js debian/toppic-common/usr/share/toppic/local-source-copies// dh_installdocs -O--buildsystem=cmake install -m0755 -d debian/toppic/usr/share/doc/toppic install -p -m0644 debian/README.Debian debian/toppic/usr/share/doc/toppic/README.Debian install -p -m0644 debian/copyright debian/toppic/usr/share/doc/toppic/copyright install -p -m0644 debian/copyright debian/toppic-common/usr/share/doc/toppic-common/copyright dh_installchangelogs -O--buildsystem=cmake install -m0755 -d debian/toppic/usr/share/doc/toppic install -p -m0644 debian/.debhelper/generated/toppic/dh_installchangelogs.dch.trimmed debian/toppic/usr/share/doc/toppic/changelog.Debian install -m0755 -d debian/toppic-common/usr/share/doc/toppic-common install -p -m0644 debian/.debhelper/generated/toppic-common/dh_installchangelogs.dch.trimmed debian/toppic-common/usr/share/doc/toppic-common/changelog.Debian dh_installman -O--buildsystem=cmake install -m0755 -d debian/toppic/usr/share/man/man1/ install -p -m0644 ./debian/topfd.1 debian/toppic/usr/share/man/man1/topfd.1 install -m0755 -d debian/toppic/usr/share/man/man1/ install -p -m0644 ./debian/toppic.1 debian/toppic/usr/share/man/man1/toppic.1 install -m0755 -d debian/toppic/usr/share/man/man1/ install -p -m0644 ./debian/topmg.1 debian/toppic/usr/share/man/man1/topmg.1 install -m0755 -d debian/toppic/usr/share/man/man1/ install -p -m0644 ./debian/topdiff.1 debian/toppic/usr/share/man/man1/topdiff.1 man-recode --to-code UTF-8 --suffix .dh-new debian/toppic/usr/share/man/man1/topdiff.1 man-recode --to-code UTF-8 --suffix .dh-new debian/toppic/usr/share/man/man1/toppic.1 man-recode --to-code UTF-8 --suffix .dh-new debian/toppic/usr/share/man/man1/topfd.1 man-recode --to-code UTF-8 --suffix .dh-new debian/toppic/usr/share/man/man1/topmg.1 mv debian/toppic/usr/share/man/man1/topdiff.1.dh-new debian/toppic/usr/share/man/man1/topdiff.1 chmod 0644 -- debian/toppic/usr/share/man/man1/topdiff.1 mv debian/toppic/usr/share/man/man1/topfd.1.dh-new debian/toppic/usr/share/man/man1/topfd.1 chmod 0644 -- debian/toppic/usr/share/man/man1/topfd.1 mv debian/toppic/usr/share/man/man1/topmg.1.dh-new debian/toppic/usr/share/man/man1/topmg.1 chmod 0644 -- debian/toppic/usr/share/man/man1/topmg.1 mv debian/toppic/usr/share/man/man1/toppic.1.dh-new debian/toppic/usr/share/man/man1/toppic.1 chmod 0644 -- debian/toppic/usr/share/man/man1/toppic.1 dh_installsystemduser -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake install -m0755 -d debian/toppic/usr/share/man/man1 rm -f debian/toppic/usr/share/man/man1/topdiff_gui.1.gz ln -s topdiff.1.gz debian/toppic/usr/share/man/man1/topdiff_gui.1.gz install -m0755 -d debian/toppic/usr/share/man/man1 rm -f debian/toppic/usr/share/man/man1/topmg_gui.1.gz ln -s topmg.1.gz debian/toppic/usr/share/man/man1/topmg_gui.1.gz install -m0755 -d debian/toppic/usr/share/man/man1 rm -f debian/toppic/usr/share/man/man1/toppic_gui.1.gz ln -s toppic.1.gz debian/toppic/usr/share/man/man1/toppic_gui.1.gz install -m0755 -d debian/toppic-common/usr/share/toppic/topview/visual/css rm -f debian/toppic-common/usr/share/toppic/topview/visual/css/FreeMono.ttf ln -s ../../../../fonts/truetype/freefont/FreeMono.ttf debian/toppic-common/usr/share/toppic/topview/visual/css/FreeMono.ttf install -m0755 -d debian/toppic-common/usr/share/toppic/topview/js/lib rm -f debian/toppic-common/usr/share/toppic/topview/js/lib/popper.min.js ln -s ../../../../nodejs/popper.js/dist/popper.min.js debian/toppic-common/usr/share/toppic/topview/js/lib/popper.min.js install -m0755 -d debian/toppic-common/usr/share/toppic/topview/js/lib rm -f debian/toppic-common/usr/share/toppic/topview/js/lib/jQuery_3_4.js ln -s ../../../../nodejs/jquery/dist/jquery.js debian/toppic-common/usr/share/toppic/topview/js/lib/jQuery_3_4.js install -m0755 -d debian/toppic-common/usr/share/toppic/topview/js/lib rm -f debian/toppic-common/usr/share/toppic/topview/js/lib/jQuery-ui_1_11_4.min.js ln -s ../../../../javascript/jquery-ui/jquery-ui.min.js debian/toppic-common/usr/share/toppic/topview/js/lib/jQuery-ui_1_11_4.min.js install -m0755 -d debian/toppic-common/usr/share/toppic/topview/visual/js/prsm rm -f debian/toppic-common/usr/share/toppic/topview/visual/js/prsm/FileSaver.js ln -s ../../../../../javascript/filesaver/FileSaver.js debian/toppic-common/usr/share/toppic/topview/visual/js/prsm/FileSaver.js install -m0755 -d debian/toppic-common/usr/share/toppic/topview/js/lib/download rm -f debian/toppic-common/usr/share/toppic/topview/js/lib/download/FileSaver.js ln -s ../../../../../javascript/filesaver/FileSaver.js debian/toppic-common/usr/share/toppic/topview/js/lib/download/FileSaver.js install -m0755 -d debian/toppic-common/usr/share/toppic/topview/inspect/js/download rm -f debian/toppic-common/usr/share/toppic/topview/inspect/js/download/FileSaver.js ln -s ../../../../../javascript/filesaver/FileSaver.js debian/toppic-common/usr/share/toppic/topview/inspect/js/download/FileSaver.js install -m0755 -d debian/toppic-common/usr/share/toppic/topview/js/lib/bootstrap rm -f debian/toppic-common/usr/share/toppic/topview/js/lib/bootstrap/bootstrap.min.js ln -s ../../../../../nodejs/bootstrap/dist/js/bootstrap.min.js debian/toppic-common/usr/share/toppic/topview/js/lib/bootstrap/bootstrap.min.js rm -f debian/toppic-common/usr/share/toppic/topview/inspect/js/download/FileSaver.js ln -s ../../../../../javascript/filesaver/FileSaver.js debian/toppic-common/usr/share/toppic/topview/inspect/js/download/FileSaver.js dh_strip_nondeterminism -O--buildsystem=cmake Using 1711960066 as canonical time Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/folder_2.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/pwiz_1.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/toppic_2.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/common/spectrum_view/images/png.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/common/spectrum_view/images/svg.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/msconvert_1.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/folder_1.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/toppic_1.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/topfd_1.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/datatables.net-dt/images/sort_desc.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/datatables.net-dt/images/sort_both.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/datatables.net-dt/images/sort_asc.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/datatables.net-dt/images/sort_asc_disabled.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/datatables.net-dt/images/sort_desc_disabled.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/common/spectrum_view/images/download.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/images/ui-icons_777777_256x240.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/images/ui-icons_777620_256x240.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/images/ui-icons_ffffff_256x240.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/images/ui-icons_555555_256x240.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/images/ui-icons_444444_256x240.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/images/ui-icons_cc0000_256x240.png using File::StripNondeterminism::handlers::png dh_compress -O--buildsystem=cmake cd debian/toppic cd debian/toppic-common chmod a-x usr/share/doc/toppic/changelog.Debian usr/share/man/man1/topdiff.1 usr/share/man/man1/topfd.1 usr/share/man/man1/topmg.1 usr/share/man/man1/toppic.1 gzip -9nf usr/share/doc/toppic/changelog.Debian usr/share/man/man1/topdiff.1 usr/share/man/man1/topfd.1 usr/share/man/man1/topmg.1 usr/share/man/man1/toppic.1 chmod a-x usr/share/doc/toppic-common/changelog.Debian usr/share/doc/toppic-common/topmg_manual.md usr/share/doc/toppic-common/toppic_manual.md usr/share/doc/toppic-common/tutorial.md cd '/<>' gzip -9nf usr/share/doc/toppic-common/changelog.Debian usr/share/doc/toppic-common/topmg_manual.md usr/share/doc/toppic-common/toppic_manual.md usr/share/doc/toppic-common/tutorial.md cd '/<>' dh_fixperms -O--buildsystem=cmake find debian/toppic ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/toppic-common ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/toppic/usr/share/doc -type f -a -true -a ! -regex 'debian/toppic/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/toppic/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/toppic-common/usr/share/doc -type f -a -true -a ! -regex 'debian/toppic-common/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/toppic/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/toppic-common/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/toppic -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/toppic-common -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/toppic/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake install -m0755 -d debian/toppic/usr/lib/debug/.dwz/x86_64-linux-gnu dwz -mdebian/toppic/usr/lib/debug/.dwz/x86_64-linux-gnu/toppic.debug -M/usr/lib/debug/.dwz/x86_64-linux-gnu/toppic.debug -- debian/toppic/usr/bin/topconvert debian/toppic/usr/bin/topdiff debian/toppic/usr/bin/topdiff_gui debian/toppic/usr/bin/topfd debian/toppic/usr/bin/topfd_gui debian/toppic/usr/bin/topindex debian/toppic/usr/bin/topindex_gui debian/toppic/usr/bin/topmerge debian/toppic/usr/bin/topmerge_gui debian/toppic/usr/bin/topmg debian/toppic/usr/bin/topmg_gui debian/toppic/usr/bin/toppic debian/toppic/usr/bin/toppic_gui objcopy --compress-debug-sections debian/toppic/usr/lib/debug/.dwz/x86_64-linux-gnu/toppic.debug chmod 0644 -- debian/toppic/usr/lib/debug/.dwz/x86_64-linux-gnu/toppic.debug dh_strip -a -O--buildsystem=cmake debugedit --build-id --build-id-seed=toppic/1.5.3\+dfsg1-1build3 debian/toppic/usr/bin/topmg debugedit: debian/toppic/usr/bin/topmg: Unknown DWARF DW_FORM_0x1f20 fc0c0c847ab5a0510e6d1ba0c7618ecd3ccfea81 install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/fc objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topmg debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/fc/0c0c847ab5a0510e6d1ba0c7618ecd3ccfea81.debug chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/fc/0c0c847ab5a0510e6d1ba0c7618ecd3ccfea81.debug strip --remove-section=.comment --remove-section=.note -o /tmp/FAhT17HJr7/stripAmQxg8 debian/toppic/usr/bin/topmg chmod --reference debian/toppic/usr/bin/topmg /tmp/FAhT17HJr7/stripAmQxg8 cat '/tmp/FAhT17HJr7/stripAmQxg8' > 'debian/toppic/usr/bin/topmg' chmod --reference /tmp/FAhT17HJr7/stripAmQxg8 debian/toppic/usr/bin/topmg objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/fc/0c0c847ab5a0510e6d1ba0c7618ecd3ccfea81.debug debian/toppic/usr/bin/topmg /tmp/FAhT17HJr7/objcopyN0r2wo chmod --reference debian/toppic/usr/bin/topmg /tmp/FAhT17HJr7/objcopyN0r2wo cat '/tmp/FAhT17HJr7/objcopyN0r2wo' > 'debian/toppic/usr/bin/topmg' chmod --reference /tmp/FAhT17HJr7/objcopyN0r2wo debian/toppic/usr/bin/topmg debugedit --build-id --build-id-seed=toppic/1.5.3\+dfsg1-1build3 debian/toppic/usr/bin/topfd_gui debugedit: debian/toppic/usr/bin/topfd_gui: Unknown DWARF DW_FORM_0x1f21 9b7f9ce45201cd70874108437db3e9217cde24da install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/9b objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topfd_gui debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/9b/7f9ce45201cd70874108437db3e9217cde24da.debug chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/9b/7f9ce45201cd70874108437db3e9217cde24da.debug strip --remove-section=.comment --remove-section=.note -o /tmp/FAhT17HJr7/strip435BOL debian/toppic/usr/bin/topfd_gui chmod --reference debian/toppic/usr/bin/topfd_gui /tmp/FAhT17HJr7/strip435BOL cat '/tmp/FAhT17HJr7/strip435BOL' > 'debian/toppic/usr/bin/topfd_gui' chmod --reference /tmp/FAhT17HJr7/strip435BOL debian/toppic/usr/bin/topfd_gui objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/9b/7f9ce45201cd70874108437db3e9217cde24da.debug debian/toppic/usr/bin/topfd_gui /tmp/FAhT17HJr7/objcopyw0kqFn chmod --reference debian/toppic/usr/bin/topfd_gui /tmp/FAhT17HJr7/objcopyw0kqFn cat '/tmp/FAhT17HJr7/objcopyw0kqFn' > 'debian/toppic/usr/bin/topfd_gui' chmod --reference /tmp/FAhT17HJr7/objcopyw0kqFn debian/toppic/usr/bin/topfd_gui debugedit --build-id --build-id-seed=toppic/1.5.3\+dfsg1-1build3 debian/toppic/usr/bin/topconvert debugedit: debian/toppic/usr/bin/topconvert: Unknown DWARF DW_FORM_0x1f21 74dcceb4e6b47a5897c9c213a75783950e5da307 install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/74 objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topconvert debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/74/dcceb4e6b47a5897c9c213a75783950e5da307.debug chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/74/dcceb4e6b47a5897c9c213a75783950e5da307.debug strip --remove-section=.comment --remove-section=.note -o /tmp/FAhT17HJr7/stripcowuD8 debian/toppic/usr/bin/topconvert chmod --reference debian/toppic/usr/bin/topconvert /tmp/FAhT17HJr7/stripcowuD8 cat '/tmp/FAhT17HJr7/stripcowuD8' > 'debian/toppic/usr/bin/topconvert' chmod --reference /tmp/FAhT17HJr7/stripcowuD8 debian/toppic/usr/bin/topconvert objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/74/dcceb4e6b47a5897c9c213a75783950e5da307.debug debian/toppic/usr/bin/topconvert /tmp/FAhT17HJr7/objcopyUfKwYo chmod --reference debian/toppic/usr/bin/topconvert /tmp/FAhT17HJr7/objcopyUfKwYo cat '/tmp/FAhT17HJr7/objcopyUfKwYo' > 'debian/toppic/usr/bin/topconvert' chmod --reference /tmp/FAhT17HJr7/objcopyUfKwYo debian/toppic/usr/bin/topconvert debugedit --build-id --build-id-seed=toppic/1.5.3\+dfsg1-1build3 debian/toppic/usr/bin/topdiff_gui debugedit: debian/toppic/usr/bin/topdiff_gui: Unknown DWARF DW_FORM_0x1f20 43dfa9ee7f860b39a022c466598dff543d054fe5 install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/43 objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topdiff_gui debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/43/dfa9ee7f860b39a022c466598dff543d054fe5.debug chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/43/dfa9ee7f860b39a022c466598dff543d054fe5.debug strip --remove-section=.comment --remove-section=.note -o /tmp/FAhT17HJr7/strip4SAt3Z debian/toppic/usr/bin/topdiff_gui chmod --reference debian/toppic/usr/bin/topdiff_gui /tmp/FAhT17HJr7/strip4SAt3Z cat '/tmp/FAhT17HJr7/strip4SAt3Z' > 'debian/toppic/usr/bin/topdiff_gui' chmod --reference /tmp/FAhT17HJr7/strip4SAt3Z debian/toppic/usr/bin/topdiff_gui objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/43/dfa9ee7f860b39a022c466598dff543d054fe5.debug debian/toppic/usr/bin/topdiff_gui /tmp/FAhT17HJr7/objcopy2ozIVQ chmod --reference debian/toppic/usr/bin/topdiff_gui /tmp/FAhT17HJr7/objcopy2ozIVQ cat '/tmp/FAhT17HJr7/objcopy2ozIVQ' > 'debian/toppic/usr/bin/topdiff_gui' chmod --reference /tmp/FAhT17HJr7/objcopy2ozIVQ debian/toppic/usr/bin/topdiff_gui debugedit --build-id --build-id-seed=toppic/1.5.3\+dfsg1-1build3 debian/toppic/usr/bin/toppic_gui debugedit: debian/toppic/usr/bin/toppic_gui: Unknown DWARF DW_FORM_0x1f21 6abba93f14732e5efddba61a437bfce1822a88d6 install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/6a objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/toppic_gui debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/6a/bba93f14732e5efddba61a437bfce1822a88d6.debug chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/6a/bba93f14732e5efddba61a437bfce1822a88d6.debug strip --remove-section=.comment --remove-section=.note -o /tmp/FAhT17HJr7/stripb1Jbq3 debian/toppic/usr/bin/toppic_gui chmod --reference debian/toppic/usr/bin/toppic_gui /tmp/FAhT17HJr7/stripb1Jbq3 cat '/tmp/FAhT17HJr7/stripb1Jbq3' > 'debian/toppic/usr/bin/toppic_gui' chmod --reference /tmp/FAhT17HJr7/stripb1Jbq3 debian/toppic/usr/bin/toppic_gui objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/6a/bba93f14732e5efddba61a437bfce1822a88d6.debug debian/toppic/usr/bin/toppic_gui /tmp/FAhT17HJr7/objcopyAtoN6p chmod --reference debian/toppic/usr/bin/toppic_gui /tmp/FAhT17HJr7/objcopyAtoN6p cat '/tmp/FAhT17HJr7/objcopyAtoN6p' > 'debian/toppic/usr/bin/toppic_gui' chmod --reference /tmp/FAhT17HJr7/objcopyAtoN6p debian/toppic/usr/bin/toppic_gui debugedit --build-id --build-id-seed=toppic/1.5.3\+dfsg1-1build3 debian/toppic/usr/bin/topmerge debugedit: debian/toppic/usr/bin/topmerge: Unknown DWARF DW_FORM_0x1f21 eea9d8b3844d59f9088ef35929cd72d0a7c9211a install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/ee objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topmerge debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/ee/a9d8b3844d59f9088ef35929cd72d0a7c9211a.debug chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/ee/a9d8b3844d59f9088ef35929cd72d0a7c9211a.debug strip --remove-section=.comment --remove-section=.note -o /tmp/FAhT17HJr7/stripo0q12d debian/toppic/usr/bin/topmerge chmod --reference debian/toppic/usr/bin/topmerge /tmp/FAhT17HJr7/stripo0q12d cat '/tmp/FAhT17HJr7/stripo0q12d' > 'debian/toppic/usr/bin/topmerge' chmod --reference /tmp/FAhT17HJr7/stripo0q12d debian/toppic/usr/bin/topmerge objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/ee/a9d8b3844d59f9088ef35929cd72d0a7c9211a.debug debian/toppic/usr/bin/topmerge /tmp/FAhT17HJr7/objcopyHNs2Kx chmod --reference debian/toppic/usr/bin/topmerge /tmp/FAhT17HJr7/objcopyHNs2Kx cat '/tmp/FAhT17HJr7/objcopyHNs2Kx' > 'debian/toppic/usr/bin/topmerge' chmod --reference /tmp/FAhT17HJr7/objcopyHNs2Kx debian/toppic/usr/bin/topmerge debugedit --build-id --build-id-seed=toppic/1.5.3\+dfsg1-1build3 debian/toppic/usr/bin/topfd debugedit: debian/toppic/usr/bin/topfd: Unknown DWARF DW_FORM_0x1f21 53077fe42ea4d2a30e2e2bc02c0f4a6c84026338 install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/53 objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topfd debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/53/077fe42ea4d2a30e2e2bc02c0f4a6c84026338.debug chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/53/077fe42ea4d2a30e2e2bc02c0f4a6c84026338.debug strip --remove-section=.comment --remove-section=.note -o /tmp/FAhT17HJr7/stripUPvIUe debian/toppic/usr/bin/topfd chmod --reference debian/toppic/usr/bin/topfd /tmp/FAhT17HJr7/stripUPvIUe cat '/tmp/FAhT17HJr7/stripUPvIUe' > 'debian/toppic/usr/bin/topfd' chmod --reference /tmp/FAhT17HJr7/stripUPvIUe debian/toppic/usr/bin/topfd objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/53/077fe42ea4d2a30e2e2bc02c0f4a6c84026338.debug debian/toppic/usr/bin/topfd /tmp/FAhT17HJr7/objcopyloMJib chmod --reference debian/toppic/usr/bin/topfd /tmp/FAhT17HJr7/objcopyloMJib cat '/tmp/FAhT17HJr7/objcopyloMJib' > 'debian/toppic/usr/bin/topfd' chmod --reference /tmp/FAhT17HJr7/objcopyloMJib debian/toppic/usr/bin/topfd debugedit --build-id --build-id-seed=toppic/1.5.3\+dfsg1-1build3 debian/toppic/usr/bin/toppic debugedit: debian/toppic/usr/bin/toppic: Unknown DWARF DW_FORM_0x1f21 70efca56cc10e35f5f2718f1ee71f20f8f96b72f install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/70 objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/toppic debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/70/efca56cc10e35f5f2718f1ee71f20f8f96b72f.debug chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/70/efca56cc10e35f5f2718f1ee71f20f8f96b72f.debug strip --remove-section=.comment --remove-section=.note -o /tmp/FAhT17HJr7/stripu9t7de debian/toppic/usr/bin/toppic chmod --reference debian/toppic/usr/bin/toppic /tmp/FAhT17HJr7/stripu9t7de cat '/tmp/FAhT17HJr7/stripu9t7de' > 'debian/toppic/usr/bin/toppic' chmod --reference /tmp/FAhT17HJr7/stripu9t7de debian/toppic/usr/bin/toppic objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/70/efca56cc10e35f5f2718f1ee71f20f8f96b72f.debug debian/toppic/usr/bin/toppic /tmp/FAhT17HJr7/objcopy76eNGZ chmod --reference debian/toppic/usr/bin/toppic /tmp/FAhT17HJr7/objcopy76eNGZ cat '/tmp/FAhT17HJr7/objcopy76eNGZ' > 'debian/toppic/usr/bin/toppic' chmod --reference /tmp/FAhT17HJr7/objcopy76eNGZ debian/toppic/usr/bin/toppic debugedit --build-id --build-id-seed=toppic/1.5.3\+dfsg1-1build3 debian/toppic/usr/bin/topmerge_gui debugedit: debian/toppic/usr/bin/topmerge_gui: Unknown DWARF DW_FORM_0x1f20 e7c56e78b858429a69b12f7b81601fe8ca6aa809 install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/e7 objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topmerge_gui debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/e7/c56e78b858429a69b12f7b81601fe8ca6aa809.debug chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/e7/c56e78b858429a69b12f7b81601fe8ca6aa809.debug strip --remove-section=.comment --remove-section=.note -o /tmp/FAhT17HJr7/stripqb2x1u debian/toppic/usr/bin/topmerge_gui chmod --reference debian/toppic/usr/bin/topmerge_gui /tmp/FAhT17HJr7/stripqb2x1u cat '/tmp/FAhT17HJr7/stripqb2x1u' > 'debian/toppic/usr/bin/topmerge_gui' chmod --reference /tmp/FAhT17HJr7/stripqb2x1u debian/toppic/usr/bin/topmerge_gui objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/e7/c56e78b858429a69b12f7b81601fe8ca6aa809.debug debian/toppic/usr/bin/topmerge_gui /tmp/FAhT17HJr7/objcopyYRFGWt chmod --reference debian/toppic/usr/bin/topmerge_gui /tmp/FAhT17HJr7/objcopyYRFGWt cat '/tmp/FAhT17HJr7/objcopyYRFGWt' > 'debian/toppic/usr/bin/topmerge_gui' chmod --reference /tmp/FAhT17HJr7/objcopyYRFGWt debian/toppic/usr/bin/topmerge_gui debugedit --build-id --build-id-seed=toppic/1.5.3\+dfsg1-1build3 debian/toppic/usr/bin/topdiff debugedit: debian/toppic/usr/bin/topdiff: Unknown DWARF DW_FORM_0x1f21 94ea77d21b01e6214a8bb0e6d93b4df3cea88ab7 install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/94 objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topdiff debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/94/ea77d21b01e6214a8bb0e6d93b4df3cea88ab7.debug chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/94/ea77d21b01e6214a8bb0e6d93b4df3cea88ab7.debug strip --remove-section=.comment --remove-section=.note -o /tmp/FAhT17HJr7/stripQ1uoUk debian/toppic/usr/bin/topdiff chmod --reference debian/toppic/usr/bin/topdiff /tmp/FAhT17HJr7/stripQ1uoUk cat '/tmp/FAhT17HJr7/stripQ1uoUk' > 'debian/toppic/usr/bin/topdiff' chmod --reference /tmp/FAhT17HJr7/stripQ1uoUk debian/toppic/usr/bin/topdiff objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/94/ea77d21b01e6214a8bb0e6d93b4df3cea88ab7.debug debian/toppic/usr/bin/topdiff /tmp/FAhT17HJr7/objcopyTuBZHw chmod --reference debian/toppic/usr/bin/topdiff /tmp/FAhT17HJr7/objcopyTuBZHw cat '/tmp/FAhT17HJr7/objcopyTuBZHw' > 'debian/toppic/usr/bin/topdiff' chmod --reference /tmp/FAhT17HJr7/objcopyTuBZHw debian/toppic/usr/bin/topdiff debugedit --build-id --build-id-seed=toppic/1.5.3\+dfsg1-1build3 debian/toppic/usr/bin/topindex debugedit: debian/toppic/usr/bin/topindex: Unknown DWARF DW_FORM_0x1f21 b20f2776649909ad1740fc6ae68222e9ac876916 install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/b2 objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topindex debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/b2/0f2776649909ad1740fc6ae68222e9ac876916.debug chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/b2/0f2776649909ad1740fc6ae68222e9ac876916.debug strip --remove-section=.comment --remove-section=.note -o /tmp/FAhT17HJr7/stripFqREWM debian/toppic/usr/bin/topindex chmod --reference debian/toppic/usr/bin/topindex /tmp/FAhT17HJr7/stripFqREWM cat '/tmp/FAhT17HJr7/stripFqREWM' > 'debian/toppic/usr/bin/topindex' chmod --reference /tmp/FAhT17HJr7/stripFqREWM debian/toppic/usr/bin/topindex objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/b2/0f2776649909ad1740fc6ae68222e9ac876916.debug debian/toppic/usr/bin/topindex /tmp/FAhT17HJr7/objcopyBLYQ_G chmod --reference debian/toppic/usr/bin/topindex /tmp/FAhT17HJr7/objcopyBLYQ_G cat '/tmp/FAhT17HJr7/objcopyBLYQ_G' > 'debian/toppic/usr/bin/topindex' chmod --reference /tmp/FAhT17HJr7/objcopyBLYQ_G debian/toppic/usr/bin/topindex debugedit --build-id --build-id-seed=toppic/1.5.3\+dfsg1-1build3 debian/toppic/usr/bin/topindex_gui debugedit: debian/toppic/usr/bin/topindex_gui: Unknown DWARF DW_FORM_0x1f20 d65d49161a8c9d88c59a202662d80194f54cc071 install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/d6 objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topindex_gui debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/d6/5d49161a8c9d88c59a202662d80194f54cc071.debug chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/d6/5d49161a8c9d88c59a202662d80194f54cc071.debug strip --remove-section=.comment --remove-section=.note -o /tmp/FAhT17HJr7/stripzxTI1V debian/toppic/usr/bin/topindex_gui chmod --reference debian/toppic/usr/bin/topindex_gui /tmp/FAhT17HJr7/stripzxTI1V cat '/tmp/FAhT17HJr7/stripzxTI1V' > 'debian/toppic/usr/bin/topindex_gui' chmod --reference /tmp/FAhT17HJr7/stripzxTI1V debian/toppic/usr/bin/topindex_gui objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/d6/5d49161a8c9d88c59a202662d80194f54cc071.debug debian/toppic/usr/bin/topindex_gui /tmp/FAhT17HJr7/objcopyKpcJN0 chmod --reference debian/toppic/usr/bin/topindex_gui /tmp/FAhT17HJr7/objcopyKpcJN0 cat '/tmp/FAhT17HJr7/objcopyKpcJN0' > 'debian/toppic/usr/bin/topindex_gui' chmod --reference /tmp/FAhT17HJr7/objcopyKpcJN0 debian/toppic/usr/bin/topindex_gui debugedit --build-id --build-id-seed=toppic/1.5.3\+dfsg1-1build3 debian/toppic/usr/bin/topmg_gui debugedit: debian/toppic/usr/bin/topmg_gui: Unknown DWARF DW_FORM_0x1f21 2decc062ff5848cb50fb9d33eff203cf585459f3 install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/2d objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topmg_gui debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/2d/ecc062ff5848cb50fb9d33eff203cf585459f3.debug chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/2d/ecc062ff5848cb50fb9d33eff203cf585459f3.debug strip --remove-section=.comment --remove-section=.note -o /tmp/FAhT17HJr7/stripgEgw0Q debian/toppic/usr/bin/topmg_gui chmod --reference debian/toppic/usr/bin/topmg_gui /tmp/FAhT17HJr7/stripgEgw0Q cat '/tmp/FAhT17HJr7/stripgEgw0Q' > 'debian/toppic/usr/bin/topmg_gui' chmod --reference /tmp/FAhT17HJr7/stripgEgw0Q debian/toppic/usr/bin/topmg_gui objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/2d/ecc062ff5848cb50fb9d33eff203cf585459f3.debug debian/toppic/usr/bin/topmg_gui /tmp/FAhT17HJr7/objcopy4u9xSH chmod --reference debian/toppic/usr/bin/topmg_gui /tmp/FAhT17HJr7/objcopy4u9xSH cat '/tmp/FAhT17HJr7/objcopy4u9xSH' > 'debian/toppic/usr/bin/topmg_gui' chmod --reference /tmp/FAhT17HJr7/objcopy4u9xSH debian/toppic/usr/bin/topmg_gui install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/toppic/usr/lib/debug/.dwz/x86_64-linux-gnu debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/toppic/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/toppic/usr/lib/debug install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/share/doc ln -s toppic debian/.debhelper/toppic/dbgsym-root/usr/share/doc/toppic-dbgsym install -m0755 -d debian/.debhelper/toppic dh_makeshlibs -a -O--buildsystem=cmake rm -f debian/toppic/DEBIAN/shlibs dh_shlibdeps -a -O--buildsystem=cmake install -m0755 -d debian/toppic/DEBIAN dpkg-shlibdeps -Tdebian/toppic.substvars debian/toppic/usr/bin/topmg debian/toppic/usr/bin/topfd_gui debian/toppic/usr/bin/topconvert debian/toppic/usr/bin/topdiff_gui debian/toppic/usr/bin/toppic_gui debian/toppic/usr/bin/topmerge debian/toppic/usr/bin/topfd debian/toppic/usr/bin/toppic debian/toppic/usr/bin/topmerge_gui debian/toppic/usr/bin/topdiff debian/toppic/usr/bin/topindex debian/toppic/usr/bin/topindex_gui debian/toppic/usr/bin/topmg_gui dh_installdeb -O--buildsystem=cmake install -m0755 -d debian/toppic/DEBIAN install -m0755 -d debian/toppic-common/DEBIAN dh_gencontrol -O--buildsystem=cmake install -m0755 -d debian/toppic-common/DEBIAN echo misc:Depends= >> debian/toppic-common.substvars echo misc:Pre-Depends= >> debian/toppic-common.substvars dpkg-gencontrol -ptoppic-common -ldebian/changelog -Tdebian/toppic-common.substvars -Pdebian/toppic-common install -m0755 -d debian/toppic/DEBIAN echo misc:Depends= >> debian/toppic.substvars echo misc:Pre-Depends= >> debian/toppic.substvars install -m0755 -d debian/.debhelper/toppic/dbgsym-root/DEBIAN dpkg-gencontrol -ptoppic -ldebian/changelog -Tdebian/toppic.substvars -Pdebian/.debhelper/toppic/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=toppic-dbgsym "-DDepends=toppic (= \${binary:Version})" "-DDescription=debug symbols for toppic" "-DBuild-Ids=2decc062ff5848cb50fb9d33eff203cf585459f3 43dfa9ee7f860b39a022c466598dff543d054fe5 53077fe42ea4d2a30e2e2bc02c0f4a6c84026338 6abba93f14732e5efddba61a437bfce1822a88d6 70efca56cc10e35f5f2718f1ee71f20f8f96b72f 74dcceb4e6b47a5897c9c213a75783950e5da307 94ea77d21b01e6214a8bb0e6d93b4df3cea88ab7 9b7f9ce45201cd70874108437db3e9217cde24da b20f2776649909ad1740fc6ae68222e9ac876916 d65d49161a8c9d88c59a202662d80194f54cc071 e7c56e78b858429a69b12f7b81601fe8ca6aa809 eea9d8b3844d59f9088ef35929cd72d0a7c9211a fc0c0c847ab5a0510e6d1ba0c7618ecd3ccfea81" -DSection=debug -DPackage-Type=ddeb -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/DEBIAN/control dpkg-gencontrol -ptoppic -ldebian/changelog -Tdebian/toppic.substvars -Pdebian/toppic chmod 0644 -- debian/toppic-common/DEBIAN/control chmod 0644 -- debian/toppic/DEBIAN/control dh_md5sums -O--buildsystem=cmake install -m0755 -d debian/toppic-common/DEBIAN install -m0755 -d debian/toppic/DEBIAN cd debian/toppic >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/toppic-common >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/toppic/DEBIAN/md5sums install -m0755 -d debian/.debhelper/toppic/dbgsym-root/DEBIAN cd debian/.debhelper/toppic/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/toppic-common/DEBIAN/md5sums chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/DEBIAN/md5sums dh_builddeb -O--buildsystem=cmake dpkg-deb --root-owner-group --build debian/toppic .. dpkg-deb --root-owner-group --build debian/toppic-common .. dpkg-deb --root-owner-group --build debian/.debhelper/toppic/dbgsym-root debian/.debhelper/scratch-space/build-toppic INFO: pkgstriptranslations version 154 INFO: pkgstriptranslations version 154 INFO: pkgstriptranslations version 154 pkgstriptranslations: processing toppic (in debian/toppic); do_strip: , oemstrip: pkgstriptranslations: processing toppic-common (in debian/toppic-common); do_strip: , oemstrip: pkgstriptranslations: processing toppic-dbgsym (in debian/.debhelper/toppic/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/toppic-common/DEBIAN/control, package toppic-common, directory debian/toppic-common INFO: pkgstripfiles: waiting for lock (toppic-common) ... pkgstripfiles: processing control file: debian/.debhelper/toppic/dbgsym-root/DEBIAN/control, package toppic-dbgsym, directory debian/.debhelper/toppic/dbgsym-root dpkg-deb: building package 'toppic-dbgsym' in 'debian/.debhelper/scratch-space/build-toppic/toppic-dbgsym_1.5.3+dfsg1-1build3_amd64.deb'. INFO: pkgstripfiles: waiting for lock (toppic-common) ... INFO: pkgstripfiles: waiting for lock (toppic-common) ... INFO: pkgstripfiles: waiting for lock (toppic-common) ... INFO: pkgstripfiles: waiting for lock (toppic-common) ... pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/toppic/DEBIAN/control, package toppic, directory debian/toppic Skipping arch: any to arch: all dependency to toppic-common pkgstripfiles: Running PNG optimization (using 4 cpus) for package toppic ... pkgstripfiles: No PNG files. dpkg-deb: building package 'toppic' in '../toppic_1.5.3+dfsg1-1build3_amd64.deb'. pkgstripfiles: Running PNG optimization (using 4 cpus) for package toppic-common ... xargs: warning: options --max-lines and --replace/-I/-i are mutually exclusive, ignoring previous --max-lines value ooooo..o.oooooo Renaming toppic-dbgsym_1.5.3+dfsg1-1build3_amd64.deb to toppic-dbgsym_1.5.3+dfsg1-1build3_amd64.ddeb mv debian/.debhelper/scratch-space/build-toppic/toppic-dbgsym_1.5.3\+dfsg1-1build3_amd64.deb ../toppic-dbgsym_1.5.3\+dfsg1-1build3_amd64.ddeb oooooo pkgstripfiles: PNG optimization (18/0) for package toppic-common took 21 s dpkg-deb: building package 'toppic-common' in '../toppic-common_1.5.3+dfsg1-1build3_all.deb'. dpkg-genbuildinfo --build=binary -O../toppic_1.5.3+dfsg1-1build3_amd64.buildinfo dpkg-genchanges --build=binary -mLaunchpad Build Daemon -O../toppic_1.5.3+dfsg1-1build3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2024-04-01T12:06:35Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ toppic_1.5.3+dfsg1-1build3_amd64.changes: ----------------------------------------- Format: 1.8 Date: Mon, 01 Apr 2024 19:27:46 +1100 Source: toppic Binary: toppic toppic-common Built-For-Profiles: noudeb Architecture: all amd64 Version: 1.5.3+dfsg1-1build3 Distribution: noble-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: William Grant Description: toppic - Top-down proteoform identification and characterization (programs toppic-common - Top-down proteoform identification and characterization (common d Changes: toppic (1.5.3+dfsg1-1build3) noble; urgency=medium . * No-change rebuild for CVE-2024-3094 Checksums-Sha1: bea8bd82b0e387afa29aaaa12d7efcdb918ce9d0 19565450 toppic-common_1.5.3+dfsg1-1build3_all.deb d46c3ce9bd4e364003e542181e4c1e2c68f27bf8 76068108 toppic-dbgsym_1.5.3+dfsg1-1build3_amd64.ddeb 4014839297d63ab6c35f6b40cba6105f0f66abce 14137 toppic_1.5.3+dfsg1-1build3_amd64.buildinfo cf22967a18680a5f8c18aad25cb355d5fb2cf849 3927316 toppic_1.5.3+dfsg1-1build3_amd64.deb Checksums-Sha256: e79089f44e410c1918276dda8c55964b3a829c0af4af6af0b3371f0fc5e89612 19565450 toppic-common_1.5.3+dfsg1-1build3_all.deb 53250cf59244d9a9eea707ee61bad24734a146979c598d9c282ad430da89369d 76068108 toppic-dbgsym_1.5.3+dfsg1-1build3_amd64.ddeb b68d43c3516532ae971cf5444995263269455da0aa47822852fd2785133866e3 14137 toppic_1.5.3+dfsg1-1build3_amd64.buildinfo c07f1dc38c1aac3b14468c6266235ae04126c319354563ba241b2010e18a637f 3927316 toppic_1.5.3+dfsg1-1build3_amd64.deb Files: db4a352b92783fe2c0ab67439072f814 19565450 science optional toppic-common_1.5.3+dfsg1-1build3_all.deb 987aa7d6ecf6824b8623173b5e6bf028 76068108 debug optional toppic-dbgsym_1.5.3+dfsg1-1build3_amd64.ddeb 5eaa0ee6279dbbff9707fb6ade1c8dc1 14137 science optional toppic_1.5.3+dfsg1-1build3_amd64.buildinfo 0c4ac419be1d7cbd774566b299d93349 3927316 science optional toppic_1.5.3+dfsg1-1build3_amd64.deb Original-Maintainer: The Debichem Group /<>/toppic_1.5.3+dfsg1-1build3_amd64.changes.new could not be renamed to /<>/toppic_1.5.3+dfsg1-1build3_amd64.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: toppic Binary: toppic toppic-common toppic-dbgsym Architecture: all amd64 Version: 1.5.3+dfsg1-1build3 Checksums-Md5: db4a352b92783fe2c0ab67439072f814 19565450 toppic-common_1.5.3+dfsg1-1build3_all.deb 987aa7d6ecf6824b8623173b5e6bf028 76068108 toppic-dbgsym_1.5.3+dfsg1-1build3_amd64.ddeb 0c4ac419be1d7cbd774566b299d93349 3927316 toppic_1.5.3+dfsg1-1build3_amd64.deb Checksums-Sha1: bea8bd82b0e387afa29aaaa12d7efcdb918ce9d0 19565450 toppic-common_1.5.3+dfsg1-1build3_all.deb d46c3ce9bd4e364003e542181e4c1e2c68f27bf8 76068108 toppic-dbgsym_1.5.3+dfsg1-1build3_amd64.ddeb cf22967a18680a5f8c18aad25cb355d5fb2cf849 3927316 toppic_1.5.3+dfsg1-1build3_amd64.deb Checksums-Sha256: e79089f44e410c1918276dda8c55964b3a829c0af4af6af0b3371f0fc5e89612 19565450 toppic-common_1.5.3+dfsg1-1build3_all.deb 53250cf59244d9a9eea707ee61bad24734a146979c598d9c282ad430da89369d 76068108 toppic-dbgsym_1.5.3+dfsg1-1build3_amd64.ddeb c07f1dc38c1aac3b14468c6266235ae04126c319354563ba241b2010e18a637f 3927316 toppic_1.5.3+dfsg1-1build3_amd64.deb Build-Origin: Ubuntu Build-Architecture: amd64 Build-Date: Mon, 01 Apr 2024 12:06:34 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3ubuntu1), autopoint (= 0.21-14ubuntu1), autotools-dev (= 20220109.1), base-files (= 13ubuntu9), base-passwd (= 3.6.3), bash (= 5.2.21-2ubuntu4), binutils (= 2.42-4ubuntu2), binutils-common (= 2.42-4ubuntu2), binutils-x86-64-linux-gnu (= 2.42-4ubuntu2), bsdextrautils (= 2.39.3-9ubuntu4), bsdutils (= 1:2.39.3-9ubuntu4), build-essential (= 12.10ubuntu1), bzip2 (= 1.0.8-5.1), cmake (= 3.28.3-1build6), cmake-data (= 3.28.3-1build6), coreutils (= 9.4-3ubuntu5), cpp (= 4:13.2.0-7ubuntu1), cpp-13 (= 13.2.0-23ubuntu3), cpp-13-x86-64-linux-gnu (= 13.2.0-23ubuntu3), cpp-x86-64-linux-gnu (= 4:13.2.0-7ubuntu1), dash (= 0.5.12-6ubuntu5), debconf (= 1.5.86), debhelper (= 13.14.1ubuntu5), debianutils (= 5.17build1), debugedit (= 1:5.0-5build1), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.10-1), docutils-common (= 0.20.1+dfsg-3), dpkg (= 1.22.6ubuntu6), dpkg-dev (= 1.22.6ubuntu6), dwz (= 0.15-1build6), file (= 1:5.45-3build1), findutils (= 4.9.0-5), fontconfig (= 2.15.0-1.1ubuntu2), fontconfig-config (= 2.15.0-1.1ubuntu2), fonts-dejavu-core (= 2.37-8), fonts-dejavu-mono (= 2.37-8), fonts-font-awesome (= 5.0.10+really4.7.0~dfsg-4.1), fonts-freefont-ttf (= 20211204+svn4273-2), g++ (= 4:13.2.0-7ubuntu1), g++-13 (= 13.2.0-23ubuntu3), g++-13-x86-64-linux-gnu (= 13.2.0-23ubuntu3), g++-x86-64-linux-gnu (= 4:13.2.0-7ubuntu1), gcc (= 4:13.2.0-7ubuntu1), gcc-13 (= 13.2.0-23ubuntu3), gcc-13-base (= 13.2.0-23ubuntu3), gcc-13-x86-64-linux-gnu (= 13.2.0-23ubuntu3), gcc-14-base (= 14-20240330-1ubuntu2), gcc-x86-64-linux-gnu (= 4:13.2.0-7ubuntu1), gettext (= 0.21-14ubuntu1), gettext-base (= 0.21-14ubuntu1), grep (= 3.11-4), groff-base (= 1.23.0-3build2), gzip (= 1.12-1ubuntu2), hostname (= 3.23+nmu2ubuntu1), icu-devtools (= 74.2-1ubuntu1), init-system-helpers (= 1.66ubuntu1), intltool-debian (= 0.35.0+20060710.6), javascript-common (= 11+nmu1), libacl1 (= 2.3.2-1), libarchive-zip-perl (= 1.68-1), libarchive13t64 (= 3.7.2-1.1ubuntu3), libasan8 (= 14-20240330-1ubuntu2), libatomic1 (= 14-20240330-1ubuntu2), libattr1 (= 1:2.5.2-1), libaudit-common (= 1:3.1.2-2.1build1), libaudit1 (= 1:3.1.2-2.1build1), libavahi-client3 (= 0.8-13ubuntu5), libavahi-common-data (= 0.8-13ubuntu5), libavahi-common3 (= 0.8-13ubuntu5), libbinutils (= 2.42-4ubuntu2), libblkid1 (= 2.39.3-9ubuntu4), libboost-atomic1.83-dev (= 1.83.0-2.1ubuntu3), libboost-atomic1.83.0 (= 1.83.0-2.1ubuntu3), libboost-chrono-dev (= 1.83.0.1ubuntu2), libboost-chrono1.83-dev (= 1.83.0-2.1ubuntu3), libboost-chrono1.83.0t64 (= 1.83.0-2.1ubuntu3), libboost-date-time1.83-dev (= 1.83.0-2.1ubuntu3), libboost-date-time1.83.0 (= 1.83.0-2.1ubuntu3), libboost-dev (= 1.83.0.1ubuntu2), libboost-filesystem-dev (= 1.83.0.1ubuntu2), libboost-filesystem1.83-dev (= 1.83.0-2.1ubuntu3), libboost-filesystem1.83.0 (= 1.83.0-2.1ubuntu3), libboost-iostreams-dev (= 1.83.0.1ubuntu2), libboost-iostreams1.83-dev (= 1.83.0-2.1ubuntu3), libboost-iostreams1.83.0 (= 1.83.0-2.1ubuntu3), libboost-program-options-dev (= 1.83.0.1ubuntu2), libboost-program-options1.83-dev (= 1.83.0-2.1ubuntu3), libboost-program-options1.83.0 (= 1.83.0-2.1ubuntu3), libboost-regex1.83-dev (= 1.83.0-2.1ubuntu3), libboost-regex1.83.0 (= 1.83.0-2.1ubuntu3), libboost-serialization1.83-dev (= 1.83.0-2.1ubuntu3), libboost-serialization1.83.0 (= 1.83.0-2.1ubuntu3), libboost-system-dev (= 1.83.0.1ubuntu2), libboost-system1.83-dev (= 1.83.0-2.1ubuntu3), libboost-system1.83.0 (= 1.83.0-2.1ubuntu3), libboost-thread-dev (= 1.83.0.1ubuntu2), libboost-thread1.83-dev (= 1.83.0-2.1ubuntu3), libboost-thread1.83.0 (= 1.83.0-2.1ubuntu3), libboost1.83-dev (= 1.83.0-2.1ubuntu3), libbrotli1 (= 1.1.0-2build2), libbsd0 (= 0.12.1-1build1), libbz2-1.0 (= 1.0.8-5.1), libc-bin (= 2.39-0ubuntu8), libc-dev-bin (= 2.39-0ubuntu8), libc6 (= 2.39-0ubuntu8), libc6-dev (= 2.39-0ubuntu8), libcap-ng0 (= 0.8.4-2build2), libcap2 (= 1:2.66-5ubuntu1), libcc1-0 (= 14-20240330-1ubuntu2), libcom-err2 (= 1.47.0-2.4~exp1ubuntu3), libcrypt-dev (= 1:4.4.36-4), libcrypt1 (= 1:4.4.36-4), libctf-nobfd0 (= 2.42-4ubuntu2), libctf0 (= 2.42-4ubuntu2), libcups2t64 (= 2.4.7-1.2ubuntu3), libcurl3t64-gnutls (= 8.5.0-2ubuntu9), libcurl4-gnutls-dev (= 8.5.0-2ubuntu9), libcurl4t64 (= 8.5.0-2ubuntu9), libdb5.3t64 (= 5.3.28+dfsg2-6build1), libdbus-1-3 (= 1.14.10-4ubuntu3), libdebconfclient0 (= 0.271ubuntu3), libdebhelper-perl (= 13.14.1ubuntu5), libdeflate-dev (= 1.19-1), libdeflate0 (= 1.19-1), libdouble-conversion3 (= 3.3.0-1), libdpkg-perl (= 1.22.6ubuntu6), libdrm-amdgpu1 (= 2.4.120-2), libdrm-common (= 2.4.120-2), libdrm-intel1 (= 2.4.120-2), libdrm-nouveau2 (= 2.4.120-2), libdrm-radeon1 (= 2.4.120-2), libdrm2 (= 2.4.120-2), libdw1t64 (= 0.190-1.1build3), libedit2 (= 3.1-20230828-1), libegl-dev (= 1.7.0-1), libegl-mesa0 (= 24.0.3-1ubuntu4), libegl1 (= 1.7.0-1), libeigen3-dev (= 3.4.0-4), libelf1t64 (= 0.190-1.1build3), libevdev2 (= 1.13.1+dfsg-1), libexpat1 (= 2.6.1-2build1), libffi8 (= 3.4.6-1), libfile-stripnondeterminism-perl (= 1.13.1-1), libfontconfig1 (= 2.15.0-1.1ubuntu2), libfreetype6 (= 2.13.2+dfsg-1build3), libgbm1 (= 24.0.3-1ubuntu4), libgcc-13-dev (= 13.2.0-23ubuntu3), libgcc-s1 (= 14-20240330-1ubuntu2), libgcrypt20 (= 1.10.3-2), libgdbm-compat4 (= 1.23-5), libgdbm6 (= 1.23-5), libgl-dev (= 1.7.0-1), libgl1 (= 1.7.0-1), libgl1-mesa-dri (= 24.0.3-1ubuntu4), libglapi-mesa (= 24.0.3-1ubuntu4), libglib2.0-0t64 (= 2.80.0-6build1), libglu1-mesa (= 9.0.2-1.1), libglu1-mesa-dev (= 9.0.2-1.1), libglvnd0 (= 1.7.0-1), libglx-dev (= 1.7.0-1), libglx-mesa0 (= 24.0.3-1ubuntu4), libglx0 (= 1.7.0-1), libgmp10 (= 2:6.3.0+dfsg-2ubuntu4), libgnutls30t64 (= 3.8.3-1.1ubuntu3), libgomp1 (= 14-20240330-1ubuntu2), libgpg-error0 (= 1.47-3build1), libgprofng0 (= 2.42-4ubuntu2), libgraphite2-3 (= 1.3.14-2), libgssapi-krb5-2 (= 1.20.1-6ubuntu2), libgudev-1.0-0 (= 1:238-5ubuntu1), libharfbuzz0b (= 8.3.0-2build2), libhogweed6t64 (= 3.9.1-2.2build1), libhts-dev (= 1.19+ds-1.1build3), libhts3t64 (= 1.19+ds-1.1build3), libhtscodecs2 (= 1.6.0-1), libhwasan0 (= 14-20240330-1ubuntu2), libice6 (= 2:1.0.10-1build2), libicu-dev (= 74.2-1ubuntu1), libicu74 (= 74.2-1ubuntu1), libidn2-0 (= 2.3.7-2), libinput-bin (= 1.25.0-1ubuntu2), libinput10 (= 1.25.0-1ubuntu2), libisl23 (= 0.26-3), libitm1 (= 14-20240330-1ubuntu2), libjansson4 (= 2.14-2build2), libjpeg-turbo8 (= 2.1.5-2ubuntu1), libjpeg8 (= 8c-2ubuntu11), libjs-bootstrap4 (= 4.6.1+dfsg1-4), libjs-filesaver (= 2.0.4+dfsg+~2.0.5-2), libjs-jquery (= 3.6.1+dfsg+~3.5.14-1), libjs-jquery-ui (= 1.13.2+dfsg-1), libjs-popper.js (= 1.16.1+ds-6), libjsoncpp25 (= 1.9.5-6), libk5crypto3 (= 1.20.1-6ubuntu2), libkeyutils1 (= 1.6.3-3), libkrb5-3 (= 1.20.1-6ubuntu2), libkrb5support0 (= 1.20.1-6ubuntu2), libldap2 (= 2.6.7+dfsg-1~exp1ubuntu7), libllvm17 (= 1:17.0.6-5build1), liblsan0 (= 14-20240330-1ubuntu2), liblz4-1 (= 1.9.4-1), liblzma-dev (= 5.6.1+really5.4.5-1build1), liblzma5 (= 5.6.1+really5.4.5-1build1), libmagic-mgc (= 1:5.45-3build1), libmagic1t64 (= 1:5.45-3build1), libmd0 (= 1.1.0-2), libmd4c0 (= 0.4.8-1), libmount1 (= 2.39.3-9ubuntu4), libmpc3 (= 1.3.1-1), libmpfr6 (= 4.2.1-1), libmtdev1t64 (= 1.1.6-1.1build1), libncursesw6 (= 6.4+20240113-1ubuntu1), libnettle8t64 (= 3.9.1-2.2build1), libnghttp2-14 (= 1.59.0-1build2), libopengl-dev (= 1.7.0-1), libopengl0 (= 1.7.0-1), libp11-kit0 (= 0.25.3-4ubuntu1), libpam-modules (= 1.5.3-5ubuntu4), libpam-modules-bin (= 1.5.3-5ubuntu4), libpam-runtime (= 1.5.3-5ubuntu4), libpam0g (= 1.5.3-5ubuntu4), libpciaccess0 (= 0.17-3), libpcre2-16-0 (= 10.42-4ubuntu1), libpcre2-8-0 (= 10.42-4ubuntu1), libperl5.38t64 (= 5.38.2-3.2build1), libpipeline1 (= 1.5.7-2), libpkgconf3 (= 1.8.1-2), libpng16-16t64 (= 1.6.43-5build1), libproc2-0 (= 2:4.0.4-4ubuntu3), libpsl5 (= 0.21.2-1build1), libpthread-stubs0-dev (= 0.4-1build2), libpwizlite-dev (= 3.0.5-2.1build2), libpwizlite3t64 (= 3.0.5-2.1build2), libpython3-stdlib (= 3.12.2-0ubuntu2), libpython3.12-minimal (= 3.12.2-4build4), libpython3.12-stdlib (= 3.12.2-4build4), libqt5concurrent5t64 (= 5.15.12+dfsg-3ubuntu7), libqt5core5t64 (= 5.15.12+dfsg-3ubuntu7), libqt5dbus5t64 (= 5.15.12+dfsg-3ubuntu7), libqt5gui5t64 (= 5.15.12+dfsg-3ubuntu7), libqt5network5t64 (= 5.15.12+dfsg-3ubuntu7), libqt5printsupport5t64 (= 5.15.12+dfsg-3ubuntu7), libqt5sql5t64 (= 5.15.12+dfsg-3ubuntu7), libqt5test5t64 (= 5.15.12+dfsg-3ubuntu7), libqt5widgets5t64 (= 5.15.12+dfsg-3ubuntu7), libqt5xml5t64 (= 5.15.12+dfsg-3ubuntu7), libquadmath0 (= 14-20240330-1ubuntu2), libreadline8t64 (= 8.2-4build1), librhash0 (= 1.4.3-3), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build7), libsasl2-2 (= 2.1.28+dfsg1-5ubuntu2), libsasl2-modules-db (= 2.1.28+dfsg1-5ubuntu2), libseccomp2 (= 2.5.5-1ubuntu3), libselinux1 (= 3.5-2ubuntu2), libsensors-config (= 1:3.6.0-9build1), libsensors5 (= 1:3.6.0-9build1), libsframe1 (= 2.42-4ubuntu2), libsm6 (= 2:1.2.3-1build2), libsmartcols1 (= 2.39.3-9ubuntu4), libsqlite3-0 (= 3.45.1-1ubuntu2), libssh-4 (= 0.10.6-2build2), libssl3t64 (= 3.0.13-0ubuntu3), libstdc++-13-dev (= 13.2.0-23ubuntu3), libstdc++6 (= 14-20240330-1ubuntu2), libsub-override-perl (= 0.10-1), libsystemd0 (= 255.4-1ubuntu6), libtasn1-6 (= 4.19.0-3), libtinfo6 (= 6.4+20240113-1ubuntu1), libtool (= 2.4.7-7), libtsan2 (= 14-20240330-1ubuntu2), libubsan1 (= 14-20240330-1ubuntu2), libuchardet0 (= 0.0.8-1), libudev1 (= 255.4-1ubuntu6), libunistring5 (= 1.1-2), libuuid1 (= 2.39.3-9ubuntu4), libuv1t64 (= 1.48.0-1.1build1), libvulkan-dev (= 1.3.275.0-1), libvulkan1 (= 1.3.275.0-1), libwacom-common (= 2.10.0-2), libwacom9 (= 2.10.0-2), libwayland-client0 (= 1.22.0-2.1), libwayland-server0 (= 1.22.0-2.1), libx11-6 (= 2:1.8.7-1), libx11-data (= 2:1.8.7-1), libx11-dev (= 2:1.8.7-1), libx11-xcb1 (= 2:1.8.7-1), libxau-dev (= 1:1.0.9-1build5), libxau6 (= 1:1.0.9-1build5), libxcb-dri2-0 (= 1.15-1), libxcb-dri3-0 (= 1.15-1), libxcb-glx0 (= 1.15-1), libxcb-icccm4 (= 0.4.1-1.1build2), libxcb-image0 (= 0.4.0-2), libxcb-keysyms1 (= 0.4.0-1build3), libxcb-present0 (= 1.15-1), libxcb-randr0 (= 1.15-1), libxcb-render-util0 (= 0.3.9-1build3), libxcb-render0 (= 1.15-1), libxcb-shape0 (= 1.15-1), libxcb-shm0 (= 1.15-1), libxcb-sync1 (= 1.15-1), libxcb-util1 (= 0.4.0-1build2), libxcb-xfixes0 (= 1.15-1), libxcb-xinerama0 (= 1.15-1), libxcb-xinput0 (= 1.15-1), libxcb-xkb1 (= 1.15-1), libxcb1 (= 1.15-1), libxcb1-dev (= 1.15-1), libxdmcp-dev (= 1:1.1.3-0ubuntu5), libxdmcp6 (= 1:1.1.3-0ubuntu5), libxerces-c-dev (= 3.2.4+debian-1.2ubuntu2), libxerces-c3.2t64 (= 3.2.4+debian-1.2ubuntu2), libxext-dev (= 2:1.3.4-1build1), libxext6 (= 2:1.3.4-1build1), libxfixes3 (= 1:6.0.0-2), libxkbcommon-x11-0 (= 1.6.0-1), libxkbcommon0 (= 1.6.0-1), libxml2 (= 2.9.14+dfsg-1.3ubuntu3), libxrender1 (= 1:0.9.10-1.1), libxshmfence1 (= 1.3-1build4), libxxf86vm1 (= 1:1.1.4-1build3), libzstd1 (= 1.5.5+dfsg2-2), linux-libc-dev (= 6.8.0-11.11), login (= 1:4.13+dfsg1-4ubuntu1), lto-disabled-list (= 47), m4 (= 1.4.19-4), make (= 4.3-4.1build1), man-db (= 2.12.0-4build1), mawk (= 1.3.4.20240123-1), media-types (= 10.1.0), ncurses-base (= 6.4+20240113-1ubuntu1), ncurses-bin (= 6.4+20240113-1ubuntu1), netbase (= 6.4), nlohmann-json3-dev (= 3.11.3-1), node-jquery (= 3.6.1+dfsg+~3.5.14-1), patch (= 2.7.6-7build2), perl (= 5.38.2-3.2build1), perl-base (= 5.38.2-3.2build1), perl-modules-5.38 (= 5.38.2-3.2build1), pkg-config (= 1.8.1-2), pkgconf (= 1.8.1-2), pkgconf-bin (= 1.8.1-2), po-debconf (= 1.0.21+nmu1), procps (= 2:4.0.4-4ubuntu3), python3 (= 3.12.2-0ubuntu2), python3-docutils (= 0.20.1+dfsg-3), python3-minimal (= 3.12.2-0ubuntu2), python3-roman (= 3.3-3), python3.12 (= 3.12.2-4build4), python3.12-minimal (= 3.12.2-4build4), qt5-qmake (= 5.15.12+dfsg-3ubuntu7), qt5-qmake-bin (= 5.15.12+dfsg-3ubuntu7), qtbase5-dev (= 5.15.12+dfsg-3ubuntu7), qtbase5-dev-tools (= 5.15.12+dfsg-3ubuntu7), qtchooser (= 66-2build1), readline-common (= 8.2-4build1), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.9-2), sensible-utils (= 0.0.22), sgml-base (= 1.31), shared-mime-info (= 2.4-1build2), sysvinit-utils (= 3.08-6ubuntu2), tar (= 1.35+dfsg-3), tzdata (= 2024a-1ubuntu1), util-linux (= 2.39.3-9ubuntu4), x11-common (= 1:7.7+23ubuntu2), x11proto-dev (= 2023.2-1), xkb-data (= 2.41-2), xml-core (= 0.19), xorg-sgml-doctools (= 1:1.11-1.1), xtrans-dev (= 1.4.0-1), xz-utils (= 5.6.1+really5.4.5-1build1), zlib1g (= 1:1.3.dfsg-3.1ubuntu2), zlib1g-dev (= 1:1.3.dfsg-3.1ubuntu2) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1711960066" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ toppic-common_1.5.3+dfsg1-1build3_all.deb ----------------------------------------- new Debian package, version 2.0. size 19565450 bytes: control archive=15822 bytes. 3081 bytes, 54 lines control 62442 bytes, 644 lines md5sums Package: toppic-common Source: toppic Version: 1.5.3+dfsg1-1build3 Architecture: all Maintainer: Ubuntu Developers Installed-Size: 56336 Depends: fonts-font-awesome, fonts-freefont-ttf, libjs-filesaver, libjs-bootstrap4, libjs-popper.js, libjs-jquery-ui, node-jquery Section: science Priority: optional Homepage: http://proteomics.informatics.iupui.edu/software/toppic/index.html Description: Top-down proteoform identification and characterization (common data) The TopPIC Suite consists of four software tools for the interpretation of top-down mass spectrometry data: TopFD, TopPIC, TopMG, and TopDiff. . -TopFD (Top-down mass spectral Feature Detection) is a software tool for top-down spectral deconvolution and a successor to MS-Deconv. It groups top-down spectral peaks into isotopomer envelopes and converts isotopomer envelopes to monoisotopic neutral masses. In addition, it extracts proteoform features from LC-MS or CE-MS data. . -TopPIC (Top-down mass spectrometry based Proteoform Identification and Characterization) identifies and characterizes proteoforms at the proteome level by searching top-down tandem mass spectra against a protein sequence database. TopPIC is a successor to MS-Align+. It efficiently identifies proteoforms with unexpected alterations, such as mutations and post-translational modifications (PTMs), accurately estimates the statistical significance of identifications, and characterizes reported proteoforms with unknown mass shifts. It uses several techniques, such as indexes, spectral alignment, generation function methods, and the modification identification score (MIScore), to increase the speed, sensitivity, and accuracy. . -TopMG (Top-down mass spectrometry based proteoform identification using Mass Graphs) is a software tool for identifying ultra-modified proteoforms by searching top-down tandem mass spectra against a protein sequence database. It is capable of identifying proteoforms with multiple variable PTMs and unexpected alterations, such as histone proteoforms and phosphorylated ones. It uses mass graphs, which efficiently represent candidate proteoforms with multiple variable PTMs, to increase the speed and sensitivity in proteoform identification. In addition, approximate spectrum-based filtering methods are employed for protein sequence filtering, and a Markov chain Monte Carlo method (TopMCMC) is used for estimating the statistical significance of identifications. . -TopDiff (Top-down mass spectrometry-based identification of Differentially expressed proteoforms) compares the abundances of proteoforms and finds differentially expressed proteoforms by using identifications of top-down mass spectrometry data of several protein samples. . This package ships common data used by the various program in the toppic package and some documentation. 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./usr/share/toppic/topview/js/lib/bootstrap/bootstrap.min.js -> ../../../../../nodejs/bootstrap/dist/js/bootstrap.min.js drwxr-xr-x root/root 0 2024-04-01 08:27 ./usr/share/toppic/topview/js/lib/download/ lrwxrwxrwx root/root 0 2024-04-01 08:27 ./usr/share/toppic/topview/js/lib/download/FileSaver.js -> ../../../../../javascript/filesaver/FileSaver.js lrwxrwxrwx root/root 0 2024-04-01 08:27 ./usr/share/toppic/topview/js/lib/jQuery-ui_1_11_4.min.js -> ../../../../javascript/jquery-ui/jquery-ui.min.js lrwxrwxrwx root/root 0 2024-04-01 08:27 ./usr/share/toppic/topview/js/lib/jQuery_3_4.js -> ../../../../nodejs/jquery/dist/jquery.js lrwxrwxrwx root/root 0 2024-04-01 08:27 ./usr/share/toppic/topview/js/lib/popper.min.js -> ../../../../nodejs/popper.js/dist/popper.min.js drwxr-xr-x root/root 0 2024-04-01 08:27 ./usr/share/toppic/topview/visual/ drwxr-xr-x root/root 0 2024-04-01 08:27 ./usr/share/toppic/topview/visual/css/ lrwxrwxrwx root/root 0 2024-04-01 08:27 ./usr/share/toppic/topview/visual/css/FreeMono.ttf -> ../../../../fonts/truetype/freefont/FreeMono.ttf drwxr-xr-x root/root 0 2024-04-01 08:27 ./usr/share/toppic/topview/visual/js/ drwxr-xr-x root/root 0 2024-04-01 08:27 ./usr/share/toppic/topview/visual/js/prsm/ lrwxrwxrwx root/root 0 2024-04-01 08:27 ./usr/share/toppic/topview/visual/js/prsm/FileSaver.js -> ../../../../../javascript/filesaver/FileSaver.js toppic_1.5.3+dfsg1-1build3_amd64.deb ------------------------------------ new Debian package, version 2.0. size 3927316 bytes: control archive=2086 bytes. 3275 bytes, 50 lines control 1139 bytes, 20 lines md5sums Package: toppic Version: 1.5.3+dfsg1-1build3 Architecture: amd64 Maintainer: Ubuntu Developers Installed-Size: 21148 Depends: libboost-filesystem1.83.0 (>= 1.83.0), libboost-program-options1.83.0 (>= 1.83.0), libboost-serialization1.83.0 (>= 1.83.0), libboost-thread1.83.0 (>= 1.83.0), libc6 (>= 2.38), libgcc-s1 (>= 3.3.1), libhts3t64 (>= 1.17), libpwizlite3t64 (>= 3.0.5), libqt5core5t64 (>= 5.15.1), libqt5gui5t64 (>= 5.0.2) | libqt5gui5-gles (>= 5.0.2), libqt5widgets5t64 (>= 5.2.0~alpha1), libstdc++6 (>= 13.1), libxerces-c3.2t64, toppic-common (= 1.5.3+dfsg1-1build3) Section: science Priority: optional Homepage: http://proteomics.informatics.iupui.edu/software/toppic/index.html Description: Top-down proteoform identification and characterization (programs) The TopPIC Suite consists of four software tools for the interpretation of top-down mass spectrometry data: TopFD, TopPIC, TopMG, and TopDiff. . -TopFD (Top-down mass spectral Feature Detection) is a software tool for top-down spectral deconvolution and a successor to MS-Deconv. It groups top-down spectral peaks into isotopomer envelopes and converts isotopomer envelopes to monoisotopic neutral masses. In addition, it extracts proteoform features from LC-MS or CE-MS data. . -TopPIC (Top-down mass spectrometry based Proteoform Identification and Characterization) identifies and characterizes proteoforms at the proteome level by searching top-down tandem mass spectra against a protein sequence database. TopPIC is a successor to MS-Align+. It efficiently identifies proteoforms with unexpected alterations, such as mutations and post-translational modifications (PTMs), accurately estimates the statistical significance of identifications, and characterizes reported proteoforms with unknown mass shifts. It uses several techniques, such as indexes, spectral alignment, generation function methods, and the modification identification score (MIScore), to increase the speed, sensitivity, and accuracy. . -TopMG (Top-down mass spectrometry based proteoform identification using Mass Graphs) is a software tool for identifying ultra-modified proteoforms by searching top-down tandem mass spectra against a protein sequence database. It is capable of identifying proteoforms with multiple variable PTMs and unexpected alterations, such as histone proteoforms and phosphorylated ones. It uses mass graphs, which efficiently represent candidate proteoforms with multiple variable PTMs, to increase the speed and sensitivity in proteoform identification. In addition, approximate spectrum-based filtering methods are employed for protein sequence filtering, and a Markov chain Monte Carlo method (TopMCMC) is used for estimating the statistical significance of identifications. . -TopDiff (Top-down mass spectrometry-based identification of Differentially expressed proteoforms) compares the abundances of proteoforms and finds differentially expressed proteoforms by using identifications of top-down mass spectrometry data of several protein samples. Original-Maintainer: The Debichem Group drwxr-xr-x root/root 0 2024-04-01 08:27 ./ drwxr-xr-x root/root 0 2024-04-01 08:27 ./usr/ drwxr-xr-x root/root 0 2024-04-01 08:27 ./usr/bin/ -rwxr-xr-x root/root 1403592 2024-04-01 08:27 ./usr/bin/topconvert -rwxr-xr-x root/root 1383112 2024-04-01 08:27 ./usr/bin/topdiff -rwxr-xr-x root/root 1436440 2024-04-01 08:27 ./usr/bin/topdiff_gui -rwxr-xr-x root/root 1727208 2024-04-01 08:27 ./usr/bin/topfd -rwxr-xr-x root/root 1776408 2024-04-01 08:27 ./usr/bin/topfd_gui -rwxr-xr-x root/root 694896 2024-04-01 08:27 ./usr/bin/topindex -rwxr-xr-x root/root 772808 2024-04-01 08:27 ./usr/bin/topindex_gui -rwxr-xr-x root/root 1690312 2024-04-01 08:27 ./usr/bin/topmerge -rwxr-xr-x root/root 1780496 2024-04-01 08:27 ./usr/bin/topmerge_gui -rwxr-xr-x root/root 2136800 2024-04-01 08:27 ./usr/bin/topmg -rwxr-xr-x root/root 2276136 2024-04-01 08:27 ./usr/bin/topmg_gui -rwxr-xr-x root/root 2198256 2024-04-01 08:27 ./usr/bin/toppic -rwxr-xr-x root/root 2337592 2024-04-01 08:27 ./usr/bin/toppic_gui drwxr-xr-x root/root 0 2024-04-01 08:27 ./usr/share/ drwxr-xr-x root/root 0 2024-04-01 08:27 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-04-01 08:27 ./usr/share/doc/toppic/ -rw-r--r-- root/root 395 2022-10-30 21:51 ./usr/share/doc/toppic/README.Debian -rw-r--r-- root/root 1284 2024-04-01 08:27 ./usr/share/doc/toppic/changelog.Debian.gz -rw-r--r-- root/root 10198 2022-10-30 21:51 ./usr/share/doc/toppic/copyright drwxr-xr-x root/root 0 2024-04-01 08:27 ./usr/share/man/ drwxr-xr-x root/root 0 2024-04-01 08:27 ./usr/share/man/man1/ -rw-r--r-- root/root 1425 2024-04-01 08:27 ./usr/share/man/man1/topdiff.1.gz lrwxrwxrwx root/root 0 2024-04-01 08:27 ./usr/share/man/man1/topdiff_gui.1.gz -> topdiff.1.gz -rw-r--r-- root/root 1786 2024-04-01 08:27 ./usr/share/man/man1/topfd.1.gz -rw-r--r-- root/root 3539 2024-04-01 08:27 ./usr/share/man/man1/topmg.1.gz lrwxrwxrwx root/root 0 2024-04-01 08:27 ./usr/share/man/man1/topmg_gui.1.gz -> topmg.1.gz -rw-r--r-- root/root 3712 2024-04-01 08:27 ./usr/share/man/man1/toppic.1.gz lrwxrwxrwx root/root 0 2024-04-01 08:27 ./usr/share/man/man1/toppic_gui.1.gz -> toppic.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: binary Build-Space: 5142728 Build-Time: 1102 Distribution: noble-proposed Host Architecture: amd64 Install-Time: 25 Job: toppic_1.5.3+dfsg1-1build3.dsc Machine Architecture: amd64 Package: toppic Package-Time: 1128 Source-Version: 1.5.3+dfsg1-1build3 Space: 5142728 Status: successful Version: 1.5.3+dfsg1-1build3 -------------------------------------------------------------------------------- Finished at 2024-04-01T12:06:35Z Build needed 00:18:48, 5142728k disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=noble --arch=amd64 PACKAGEBUILD-28014020 Scanning for processes to kill in build PACKAGEBUILD-28014020