Ubuntu
tophat-recondition package

tophat-recondition 1.4-3 source package in Ubuntu

Changelog

tophat-recondition (1.4-3) unstable; urgency=medium

  * Set team. Added Michael as an uploader.
  * Performed source-only upload.

 -- Steffen Moeller <email address hidden>  Tue, 09 Jun 2020 00:13:40 +0200

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
all
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

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Builds

Groovy: [FULLYBUILT] amd64

Downloads

File Size SHA-256 Checksum
tophat-recondition_1.4-3.dsc 2.0 KiB ac242947d6e8ea36de37488b443c8a855ac75c4ce22d1129a0d39f54ed5190a7
tophat-recondition_1.4.orig.tar.gz 7.6 KiB dfa150c023145052fa9042bde3d864eabf75ee042dffff927963ff49548247a5
tophat-recondition_1.4-3.debian.tar.xz 3.4 KiB e886052643893241eb77554356b54183bd25d73f654726dc48a24f9db16b30e2

Available diffs

No changes file available.

Binary packages built by this source

tophat-recondition: post-processor for TopHat unmapped reads

 tophat-recondition is a post-processor for TopHat unmapped reads
 (contained in unmapped.bam), making them compatible with downstream
 tools (e.g., the Picard suite, samtools, GATK) (TopHat issue #17). It
 also works around bugs in TopHat:
 .
  * the "mate is unmapped" SAM flag is not set on any reads in the
    unmapped.bam file (TopHat issue #3)
  * the mapped mate of an unmapped read can be absent from
    accepted_hits.bam, creating a mismatch between the file and the unmapped
    read's flags (TopHat issue #16)