From cccb8d925237b3bd73f02f548d1d980299186244 Mon Sep 17 00:00:00 2001
From: HR <you@example.com>
Date: Fri, 8 Apr 2011 09:10:35 +0200
Subject: [PATCH] patch to compile on amd64 with gcc4.4

---
 Common/delcher.hh |    1 +
 Common/gene.cc    |    2 +-
 ICM/icm.cc        |    2 +-
 3 files changed, 3 insertions(+), 2 deletions(-)

diff --git a/Common/delcher.hh b/Common/delcher.hh
index 31a3834..689bc4a 100644
--- a/Common/delcher.hh
+++ b/Common/delcher.hh
@@ -31,6 +31,7 @@
 #include  <fstream>
 #include  <vector>
 #include  <string>
+#include  <cstring>
 
 #include  "exceptions.hh"
 
diff --git a/Common/gene.cc b/Common/gene.cc
index f1bc984..fea41f4 100644
--- a/Common/gene.cc
+++ b/Common/gene.cc
@@ -443,7 +443,7 @@ int  Char_Sub
 //  Return a subscript corresponding to character  ch .
 
   {
-   char  * p;
+   const char  * p;
 
    p = strchr (CONVERSION_STRING, tolower (ch));
    if  (p == NULL)
diff --git a/ICM/icm.cc b/ICM/icm.cc
index d675c31..3376a75 100644
--- a/ICM/icm.cc
+++ b/ICM/icm.cc
@@ -1981,7 +1981,7 @@ int  Subscript
 //  model) for character  ch .
 
   {
-   char  * p;
+   const char  * p;
 
    p = strchr (ALPHA_STRING, tolower (Filter (ch)));
    if  (p == NULL)
-- 
1.7.1