t-coffee 9.03.r1318-1 source package in Ubuntu
Changelog
t-coffee (9.03.r1318-1) unstable; urgency=low * New upstream release. [ Tim Booth ] * Removed the -doc package as it is empty (Closes: #688630). docs are no longer in tarball but online: http://www.tcoffee.org/Projects/tcoffee/#DOCUMENTATION * Rejigged the rules file to use DH, not CDBS * Avoid compressing files under t-coffee-examples * Remove TMalign binary on clean (should avoid building it at all) * Fix minor typo flagged by Lintian [ Charles Plessy ] * Normalised debian/control with config-model-edit. * Normalised VCS URLs. * Using Debhelper 9. * Complies with Policy 3.9.4. [Andreas Tille] * debian/upstream: Single Reference field instead of Reference-* -- Charles Plessy <email address hidden> Sun, 14 Jul 2013 19:03:20 +0900
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any all
- Section:
- science
- Urgency:
- Low Urgency
See full publishing history Publishing
Series | Published | Component | Section |
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Downloads
File | Size | SHA-256 Checksum |
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t-coffee_9.03.r1318-1.dsc | 2.1 KiB | 685381a3a2b2bc703a181ec8c6874bb0dc1b712164ef7d332b0a95e116db8b7a |
t-coffee_9.03.r1318.orig.tar.gz | 3.3 MiB | 5bb9a531a4036b741a8ff0fe19f3591a3f33bf7ac4f484e5329b1b5dd1fff43c |
t-coffee_9.03.r1318-1.debian.tar.gz | 7.4 KiB | 23abe4b749b8841de67ba87e367bff560e0d2bfd9a2bd1ab017fa340048a0134 |
Available diffs
- diff from 9.02.r1228-2 to 9.03.r1318-1 (250.9 KiB)
No changes file available.
Binary packages built by this source
- t-coffee: Multiple Sequence Alignment
T-Coffee is a multiple sequence alignment package. Given a set of
sequences (Proteins or DNA), T-Coffee generates a multiple sequence
alignment. Version 2.00 and higher can mix sequences and structures.
.
T-Coffee allows the combination of a collection of multiple/pairwise,
global or local alignments into a single model. It can also
estimate the level of consistency of each position within the new
alignment with the rest of the alignments. See the pre-print for more
information
.
T-Coffee has a special called M-Coffee that makes it possible to combine the
output of many multiple sequence alignment packages. In its published version,
it uses MUSCLE, PROBCONS, POA, DiAlign-TS, MAFFT, Clustal W, PCMA and
T-Coffee. A special version has been made for Debian, DM-Coffee, that uses
only free software by replacing Clustal W by Kalign. Using the 8 Methods of
M-Coffee can sometimes be a bit heavy. You can use a subset of your favorite
methods if you prefer.
- t-coffee-examples: annotated examples for the use of T-Coffee
To help increasing the proficiency in the use of T-Coffee, this
package provides examples for input sequences and their proper
alignment.