t-coffee 13.45.0.4846264+really13.41.0.28bdc39+dfsg-1 source package in Ubuntu
Changelog
t-coffee (13.45.0.4846264+really13.41.0.28bdc39+dfsg-1) unstable; urgency=medium [ Étienne Mollier ] * d/t/run-unit-test: don't meddle with user's home. * d/rules: build with -fsigned-char. This fixes infinite loops on CPU architectures defaulting to the char type being unsigned, such as on arm*, ppc* and s390*. (Closes: #1023230) * d/control: add myself to uploaders. [ Andreas Tille ] * Revert version bump to latest upstream version until https://github.com/cbcrg/tcoffee/issues/56 is closed. Closes: #1022570 * Keep updated patches in debian/patches dir with suffix .13.45.0.4846264 to ease upgrading to the new version once it is ready -- Andreas Tille <email address hidden> Fri, 25 Nov 2022 11:13:19 +0100
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any all
- Section:
- science
- Urgency:
- Medium Urgency
See full publishing history Publishing
Series | Published | Component | Section | |
---|---|---|---|---|
Oracular | release | universe | science | |
Noble | release | universe | science | |
Mantic | release | universe | science | |
Lunar | release | universe | science |
Downloads
File | Size | SHA-256 Checksum |
---|---|---|
t-coffee_13.45.0.4846264+really13.41.0.28bdc39+dfsg-1.dsc | 2.3 KiB | 943f72d4090cf2a8b88ab2a79b5aa119622201b3c7e50377cb8d92c4e72636f7 |
t-coffee_13.45.0.4846264+really13.41.0.28bdc39+dfsg.orig.tar.xz | 3.1 MiB | a1b37c67caba574ccf53c38279863dffa67d62232e017317754b5eb29db60746 |
t-coffee_13.45.0.4846264+really13.41.0.28bdc39+dfsg-1.debian.tar.xz | 17.9 KiB | 3e83e95b016af77d28fc7d8315979dd397f12f333bcd4a45be5f471dbd9964ed |
Available diffs
No changes file available.
Binary packages built by this source
- t-coffee: Multiple Sequence Alignment
T-Coffee is a multiple sequence alignment package. Given a set of
sequences (Proteins or DNA), T-Coffee generates a multiple sequence
alignment. Version 2.00 and higher can mix sequences and structures.
.
T-Coffee allows the combination of a collection of multiple/pairwise,
global or local alignments into a single model. It can also
estimate the level of consistency of each position within the new
alignment with the rest of the alignments. See the pre-print for more
information
.
T-Coffee has a special called M-Coffee that makes it possible to combine the
output of many multiple sequence alignment packages. In its published version,
it uses MUSCLE, PROBCONS, POA, DiAlign-TS, MAFFT, Clustal W, PCMA and
T-Coffee. A special version has been made for Debian, DM-Coffee, that uses
only free software by replacing Clustal W by Kalign. Using the 8 Methods of
M-Coffee can sometimes be a bit heavy. You can use a subset of your favorite
methods if you prefer.
- t-coffee-dbgsym: debug symbols for t-coffee
- t-coffee-examples: annotated examples for the use of T-Coffee
To help increasing the proficiency in the use of T-Coffee, this
package provides examples for input sequences and their proper
alignment.