Ubuntu
subread package

subread 2.0.6+dfsg-3 source package in Ubuntu

Changelog

subread (2.0.6+dfsg-3) unstable; urgency=medium

  * Team upload.
  * d/control: simplify architecture specification by using the
    provisions from the architecture-properties package.
  * d/rules: preserve original mm39_RefSeq_exon.txt.gz to enable
    building twice. Closes: #1049300
  * d/control: update description of subread-data to include the gene
    annotations for both the hh39 and mm39 genomes.
  * d/patches/arch_specific_flags.patch: since -D_FILE_OFFSET_BITS=64 is
    set, use fopen() even on 32-bit systems. Closes: #1069030
    Thanks to blhc "E-pointer-trouble-at-implicit" for pointing this out.
  * d/patches/cross.patch: deleted, as it was unused and incorporated
    into arch_specific_flags.patch by Alexandre Mestiashvili.
  * d/upstream/metadata: add publications, bug info, changelog, link to
    user guide PDF.
  * d/test/control: python3 is needed

 -- Michael R. Crusoe <email address hidden>  Thu, 25 Apr 2024 13:38:39 +0300

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any all
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Oracular release universe misc

Downloads

File Size SHA-256 Checksum
subread_2.0.6+dfsg-3.dsc 2.1 KiB 1d048843afd48e20a54f636e208a0c18cfd2d7547942b9f1cf90e99f3332e396
subread_2.0.6+dfsg.orig.tar.xz 15.8 MiB 55026879f4cb40f0eca223a017fb6790fbbeeec7c828f27cb61302defbdf9753
subread_2.0.6+dfsg-3.debian.tar.xz 19.1 KiB 2c0bcc064e2ceee01c53cdf91508f10931030580b33a4da9d4fcfc9ec8fd5519

Available diffs

No changes file available.

Binary packages built by this source

subread: toolkit for processing next-gen sequencing data

 Subread aligner can be used to align both gDNA-seq and RNA-seq reads.
 Subjunc aligner was specified designed for the detection of exon-exon
 junction. For the mapping of RNA-seq reads, Subread performs local
 alignments and Subjunc performs global alignments.

subread-data: data files for subread package

 This package provides data files from the original tarball:
  - annotation: Directory including NCBI RefSeq gene annotations for
 genomes 'hg19', 'hg39', 'mm9', 'mm10', and 'mm39'. Each row is an exon.
 Entrez gene identifiers and chromosomal coordinates are provided for
 each exon.
  - test: Directory including test data and scripts.

subread-dbgsym: debug symbols for subread