RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux lgw01-33 3.19.0-33-generic #38~14.04.1-Ubuntu SMP Fri Nov 6 18:17:28 UTC 2015 x86_64 Buildd toolchain package versions: launchpad-buildd_135 python-lpbuildd_135 sbuild_0.65.2-1ubuntu2~ubuntu14.04.1~ppa6 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.04.1 bzr_2.6.0+bzr6593-1ubuntu1.1 dpkg-dev_1.17.5ubuntu5.4 python-debian_0.1.27ubuntu1~ubuntu14.04.1~ppa1. Syncing the system clock with the buildd NTP service... 24 Nov 23:20:44 ntpdate[1647]: adjust time server 10.211.37.1 offset 0.062535 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-8339895', '/home/buildd/filecache-default/8204889cda79fca0b488b979ea0c52fb9d6dbd17'] Unpacking chroot for build PACKAGEBUILD-8339895 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-8339895'] Mounting chroot for build PACKAGEBUILD-8339895 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-8339895', 'deb http://ftpmaster.internal/ubuntu xenial main universe', 'deb http://ftpmaster.internal/ubuntu xenial-security main universe', 'deb http://ftpmaster.internal/ubuntu xenial-updates main universe', 'deb http://ftpmaster.internal/ubuntu xenial-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-8339895 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-8339895', 'amd64'] Updating debian chroot for build PACKAGEBUILD-8339895 Get:1 http://ftpmaster.internal xenial InRelease [218 kB] Get:2 http://ftpmaster.internal xenial-security InRelease [64.4 kB] Get:3 http://ftpmaster.internal xenial-updates InRelease [64.4 kB] Get:4 http://ftpmaster.internal xenial-proposed InRelease [218 kB] Get:5 http://ftpmaster.internal xenial/main amd64 Packages [1444 kB] Get:6 http://ftpmaster.internal xenial/universe amd64 Packages [6980 kB] Get:7 http://ftpmaster.internal xenial/main Translation-en [842 kB] Get:8 http://ftpmaster.internal xenial/universe Translation-en [4712 kB] Get:9 http://ftpmaster.internal xenial-security/main amd64 Packages [28 B] Get:10 http://ftpmaster.internal xenial-security/universe amd64 Packages [28 B] Get:11 http://ftpmaster.internal xenial-security/main Translation-en [28 B] Get:12 http://ftpmaster.internal xenial-security/universe Translation-en [28 B] Get:13 http://ftpmaster.internal xenial-updates/main amd64 Packages [28 B] Get:14 http://ftpmaster.internal xenial-updates/universe amd64 Packages [28 B] Get:15 http://ftpmaster.internal xenial-updates/main Translation-en [28 B] Get:16 http://ftpmaster.internal xenial-updates/universe Translation-en [28 B] Get:17 http://ftpmaster.internal xenial-proposed/main amd64 Packages [59.2 kB] Get:18 http://ftpmaster.internal xenial-proposed/universe amd64 Packages [282 kB] Get:19 http://ftpmaster.internal xenial-proposed/main Translation-en [25.0 kB] Get:20 http://ftpmaster.internal xenial-proposed/universe Translation-en [119 kB] Fetched 15.0 MB in 8s (1676 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libisl13 udev Use 'apt-get autoremove' to remove them. The following NEW packages will be installed: libisl15 The following packages will be upgraded: advancecomp base-files binutils bsdutils cpp cpp-5 debconf diffutils dpkg dpkg-dev e2fslibs e2fsprogs findutils g++ g++-5 gcc gcc-5 gcc-5-base grep hostname init initscripts libapparmor1 libasan2 libatomic1 libaudit-common libaudit1 libblkid1 libcap2 libcap2-bin libcc1-0 libcilkrts5 libcomerr2 libcurl3-gnutls libdbus-1-3 libdpkg-perl libfdisk1 libgcc-5-dev libgcc1 libgcrypt20 libgmp10 libgnutls-deb0-28 libgomp1 libgpg-error0 libgssapi-krb5-2 libidn11 libitm1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblsan0 libmount1 libmpx0 libpng12-0 libquadmath0 libselinux1 libsemanage-common libsemanage1 libsepol1 libsmartcols1 libsqlite3-0 libss2 libssl1.0.0 libstdc++-5-dev libstdc++6 libsystemd0 libtasn1-6 libtsan0 libubsan0 libudev1 libuuid1 linux-libc-dev lsb-base mount openssl pkg-create-dbgsym systemd systemd-sysv sysv-rc sysvinit-utils tar udev util-linux 84 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 93.1 MB of archives. After this operation, 214 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ xenial/main base-files amd64 9.4ubuntu2 [62.2 kB] Get:2 http://ftpmaster.internal/ubuntu/ xenial/main bsdutils amd64 1:2.27.1-1ubuntu3 [51.5 kB] Get:3 http://ftpmaster.internal/ubuntu/ xenial/main diffutils amd64 1:3.3-2 [156 kB] Get:4 http://ftpmaster.internal/ubuntu/ xenial/main dpkg amd64 1.18.3ubuntu1 [2081 kB] Get:5 http://ftpmaster.internal/ubuntu/ xenial/main e2fslibs amd64 1.42.13-1ubuntu1 [188 kB] Get:6 http://ftpmaster.internal/ubuntu/ xenial/main e2fsprogs amd64 1.42.13-1ubuntu1 [771 kB] Get:7 http://ftpmaster.internal/ubuntu/ xenial/main findutils amd64 4.4.2-10 [281 kB] Get:8 http://ftpmaster.internal/ubuntu/ xenial-proposed/main grep amd64 2.22-1 [149 kB] Get:9 http://ftpmaster.internal/ubuntu/ xenial/main hostname amd64 3.16ubuntu2 [11.5 kB] Get:10 http://ftpmaster.internal/ubuntu/ xenial/main init amd64 1.24ubuntu2 [3966 B] Get:11 http://ftpmaster.internal/ubuntu/ xenial/main libsmartcols1 amd64 2.27.1-1ubuntu3 [62.3 kB] Get:12 http://ftpmaster.internal/ubuntu/ xenial/main libuuid1 amd64 2.27.1-1ubuntu3 [14.7 kB] Get:13 http://ftpmaster.internal/ubuntu/ xenial/main libblkid1 amd64 2.27.1-1ubuntu3 [107 kB] Get:14 http://ftpmaster.internal/ubuntu/ xenial/main libfdisk1 amd64 2.27.1-1ubuntu3 [139 kB] Get:15 http://ftpmaster.internal/ubuntu/ xenial/main debconf all 1.5.58ubuntu1 [136 kB] Get:16 http://ftpmaster.internal/ubuntu/ xenial/main sysvinit-utils amd64 2.88dsf-59.2ubuntu3 [25.7 kB] Get:17 http://ftpmaster.internal/ubuntu/ xenial/main sysv-rc all 2.88dsf-59.2ubuntu3 [36.1 kB] Get:18 http://ftpmaster.internal/ubuntu/ xenial/main initscripts amd64 2.88dsf-59.2ubuntu3 [24.8 kB] Get:19 http://ftpmaster.internal/ubuntu/ xenial/main util-linux amd64 2.27.1-1ubuntu3 [847 kB] Get:20 http://ftpmaster.internal/ubuntu/ xenial/main libudev1 amd64 228-2ubuntu1 [56.4 kB] Get:21 http://ftpmaster.internal/ubuntu/ xenial/main udev amd64 228-2ubuntu1 [980 kB] Get:22 http://ftpmaster.internal/ubuntu/ xenial/main libsystemd0 amd64 228-2ubuntu1 [203 kB] Get:23 http://ftpmaster.internal/ubuntu/ xenial/main systemd amd64 228-2ubuntu1 [3491 kB] Get:24 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libselinux1 amd64 2.4-3 [56.0 kB] Get:25 http://ftpmaster.internal/ubuntu/ xenial/main libapparmor1 amd64 2.10-0ubuntu8 [29.1 kB] Get:26 http://ftpmaster.internal/ubuntu/ xenial/main libaudit-common all 1:2.4.4-4ubuntu1 [3892 B] Get:27 http://ftpmaster.internal/ubuntu/ xenial/main libaudit1 amd64 1:2.4.4-4ubuntu1 [36.3 kB] Get:28 http://ftpmaster.internal/ubuntu/ xenial/main libcap2 amd64 1:2.24-12 [12.9 kB] Get:29 http://ftpmaster.internal/ubuntu/ xenial/main libmount1 amd64 2.27.1-1ubuntu3 [114 kB] Get:30 http://ftpmaster.internal/ubuntu/ xenial/main libcap2-bin amd64 1:2.24-12 [20.2 kB] Get:31 http://ftpmaster.internal/ubuntu/ xenial/main lsb-base all 9.20150917ubuntu1 [13.4 kB] Get:32 http://ftpmaster.internal/ubuntu/ xenial/main mount amd64 2.27.1-1ubuntu3 [121 kB] Get:33 http://ftpmaster.internal/ubuntu/ xenial/main tar amd64 1.28-2.1 [209 kB] Get:34 http://ftpmaster.internal/ubuntu/ xenial/main systemd-sysv amd64 228-2ubuntu1 [14.9 kB] Get:35 http://ftpmaster.internal/ubuntu/ xenial/main libgmp10 amd64 2:6.1.0+dfsg-2 [240 kB] Get:36 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libisl15 amd64 0.15-3 [514 kB] Get:37 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libgomp1 amd64 5.2.1-25ubuntu1 [55.0 kB] Get:38 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libitm1 amd64 5.2.1-25ubuntu1 [27.4 kB] Get:39 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libatomic1 amd64 5.2.1-25ubuntu1 [8894 B] Get:40 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libasan2 amd64 5.2.1-25ubuntu1 [269 kB] Get:41 http://ftpmaster.internal/ubuntu/ xenial-proposed/main liblsan0 amd64 5.2.1-25ubuntu1 [109 kB] Get:42 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libtsan0 amd64 5.2.1-25ubuntu1 [249 kB] Get:43 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libubsan0 amd64 5.2.1-25ubuntu1 [100 kB] Get:44 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libcilkrts5 amd64 5.2.1-25ubuntu1 [40.0 kB] Get:45 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libmpx0 amd64 5.2.1-25ubuntu1 [9748 B] Get:46 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libquadmath0 amd64 5.2.1-25ubuntu1 [131 kB] Get:47 http://ftpmaster.internal/ubuntu/ xenial-proposed/main cpp-5 amd64 5.2.1-25ubuntu1 [26.4 MB] Get:48 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libcc1-0 amd64 5.2.1-25ubuntu1 [30.9 kB] Get:49 http://ftpmaster.internal/ubuntu/ xenial/main binutils amd64 2.25.51.20151113-2ubuntu1 [2307 kB] Get:50 http://ftpmaster.internal/ubuntu/ xenial-proposed/main g++-5 amd64 5.2.1-25ubuntu1 [15.3 MB] Get:51 http://ftpmaster.internal/ubuntu/ xenial-proposed/main gcc-5 amd64 5.2.1-25ubuntu1 [26.6 MB] Get:52 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libgcc-5-dev amd64 5.2.1-25ubuntu1 [2229 kB] Get:53 http://ftpmaster.internal/ubuntu/ xenial-proposed/main gcc-5-base amd64 5.2.1-25ubuntu1 [16.4 kB] Get:54 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libstdc++6 amd64 5.2.1-25ubuntu1 [393 kB] Get:55 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libstdc++-5-dev amd64 5.2.1-25ubuntu1 [1421 kB] Get:56 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libgcc1 amd64 1:5.2.1-25ubuntu1 [38.8 kB] Get:57 http://ftpmaster.internal/ubuntu/ xenial/main libcomerr2 amd64 1.42.13-1ubuntu1 [65.7 kB] Get:58 http://ftpmaster.internal/ubuntu/ xenial/main libgpg-error0 amd64 1.20-1 [32.8 kB] Get:59 http://ftpmaster.internal/ubuntu/ xenial/main libgcrypt20 amd64 1.6.4-3 [336 kB] Get:60 http://ftpmaster.internal/ubuntu/ xenial/main libsepol1 amd64 2.4-2 [186 kB] Get:61 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libsemanage-common all 2.4-3 [6744 B] Get:62 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libsemanage1 amd64 2.4-3 [79.3 kB] Get:63 http://ftpmaster.internal/ubuntu/ xenial/main libss2 amd64 1.42.13-1ubuntu1 [70.0 kB] Get:64 http://ftpmaster.internal/ubuntu/ xenial/main libtasn1-6 amd64 4.7-2 [43.1 kB] Get:65 http://ftpmaster.internal/ubuntu/ xenial/main libgnutls-deb0-28 amd64 3.3.18-1ubuntu1 [520 kB] Get:66 http://ftpmaster.internal/ubuntu/ xenial/main libpng12-0 amd64 1.2.54-1 [116 kB] Get:67 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libsqlite3-0 amd64 3.9.2-1 [395 kB] Get:68 http://ftpmaster.internal/ubuntu/ xenial/main libssl1.0.0 amd64 1.0.2d-0ubuntu2 [1079 kB] Get:69 http://ftpmaster.internal/ubuntu/ xenial/main libgssapi-krb5-2 amd64 1.13.2+dfsg-4 [120 kB] Get:70 http://ftpmaster.internal/ubuntu/ xenial/main libkrb5-3 amd64 1.13.2+dfsg-4 [274 kB] Get:71 http://ftpmaster.internal/ubuntu/ xenial/main libkrb5support0 amd64 1.13.2+dfsg-4 [30.4 kB] Get:72 http://ftpmaster.internal/ubuntu/ xenial/main libk5crypto3 amd64 1.13.2+dfsg-4 [81.3 kB] Get:73 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libkeyutils1 amd64 1.5.9-8 [9824 B] Get:74 http://ftpmaster.internal/ubuntu/ xenial/main libidn11 amd64 1.32-3ubuntu1 [45.5 kB] Get:75 http://ftpmaster.internal/ubuntu/ xenial/main libcurl3-gnutls amd64 7.45.0-1ubuntu1 [183 kB] Get:76 http://ftpmaster.internal/ubuntu/ xenial/main libdbus-1-3 amd64 1.10.4-1ubuntu2 [161 kB] Get:77 http://ftpmaster.internal/ubuntu/ xenial/main openssl amd64 1.0.2d-0ubuntu2 [511 kB] Get:78 http://ftpmaster.internal/ubuntu/ xenial/main advancecomp amd64 1.20-1 [160 kB] Get:79 http://ftpmaster.internal/ubuntu/ xenial-proposed/main cpp amd64 4:5.2.1-13ubuntu4 [27.5 kB] Get:80 http://ftpmaster.internal/ubuntu/ xenial/main dpkg-dev all 1.18.3ubuntu1 [583 kB] Get:81 http://ftpmaster.internal/ubuntu/ xenial/main libdpkg-perl all 1.18.3ubuntu1 [195 kB] Get:82 http://ftpmaster.internal/ubuntu/ xenial-proposed/main gcc amd64 4:5.2.1-13ubuntu4 [5172 B] Get:83 http://ftpmaster.internal/ubuntu/ xenial-proposed/main g++ amd64 4:5.2.1-13ubuntu4 [1506 B] Get:84 http://ftpmaster.internal/ubuntu/ xenial/main linux-libc-dev amd64 4.2.0-19.23 [820 kB] Get:85 http://ftpmaster.internal/ubuntu/ xenial/main pkg-create-dbgsym all 0.70 [9046 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 93.1 MB in 12s (7518 kB/s) (Reading database ... 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Processing triggers for libc-bin (2.21-0ubuntu4) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-8339895', 'amd64', 'xenial-proposed', '-c', 'chroot:autobuild', '--arch=amd64', '--dist=xenial-proposed', '--purge=never', '--nolog', '-A', 'staden-io-lib_1.14.6-2.dsc'] Initiating build PACKAGEBUILD-8339895 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 3.19.0-33-generic #38~14.04.1-Ubuntu SMP Fri Nov 6 18:17:28 UTC 2015 x86_64 sbuild (Debian sbuild) 0.65.2 (24 Mar 2015) on lgw01-33.buildd ╔══════════════════════════════════════════════════════════════════════════════╗ ║ staden-io-lib 1.14.6-2 (amd64) 24 Nov 2015 23:21 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: staden-io-lib Version: 1.14.6-2 Source Version: 1.14.6-2 Distribution: xenial-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/staden-io-lib-q372IV/staden-io-lib-1.14.6' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/staden-io-lib-q372IV' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-8339895/chroot-autobuild' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Local sources ───────────── staden-io-lib_1.14.6-2.dsc exists in .; copying to chroot Check architectures ─────────────────── Check dependencies ────────────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/«BUILDDIR»/resolver-md2Dly/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign file: ./ InRelease Ign file: ./ Release.gpg Get:1 file: ./ Release [2119 B] Ign file: ./ Translation-en Reading package lists... Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libisl13 udev Use 'apt-get autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/774 B of archives. After this operation, 0 B of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-core-dummy debconf: delaying package configuration, since apt-utils is not installed Authentication warning overridden. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11718 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy.deb ... 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Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), dh-autoreconf, zlib1g-dev, libcurl4-gnutls-dev | libcurl4-nss-dev, d-shlibs Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), dh-autoreconf, zlib1g-dev, libcurl4-gnutls-dev | libcurl4-nss-dev, d-shlibs dpkg-deb: building package 'sbuild-build-depends-staden-io-lib-dummy' in '/«BUILDDIR»/resolver-bnGlig/apt_archive/sbuild-build-depends-staden-io-lib-dummy.deb'. Ign file: ./ InRelease Ign file: ./ Release.gpg Get:1 file: ./ Release [2119 B] Ign file: ./ Translation-en Reading package lists... Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install staden-io-lib build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libisl13 udev Use 'apt-get autoremove' to remove them. The following extra packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasprintf0v5 libcroco3 libcurl4-gnutls-dev libfile-stripnondeterminism-perl libglib2.0-0 libicu55 libmagic1 libpipeline1 libsigsegv2 libtimedate-perl libtool libunistring0 libxml2 m4 man-db po-debconf zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican wordlist whois vacation dh-make gettext-doc groff libcurl4-doc libcurl3-dbg libgnutls-dev libidn11-dev libkrb5-dev libldap2-dev librtmp-dev pkg-config libtool-doc automaken gfortran fortran95-compiler gcj-jdk less www-browser libmail-box-perl Recommended packages: curl wget lynx-cur libasprintf-dev libgettextpo-dev libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev xml-core libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasprintf0v5 libcroco3 libcurl4-gnutls-dev libfile-stripnondeterminism-perl libglib2.0-0 libicu55 libmagic1 libpipeline1 libsigsegv2 libtimedate-perl libtool libunistring0 libxml2 m4 man-db po-debconf sbuild-build-depends-staden-io-lib-dummy zlib1g-dev 0 upgraded, 33 newly installed, 0 to remove and 0 not upgraded. Need to get 16.4 MB/16.4 MB of archives. After this operation, 63.2 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-staden-io-lib-dummy Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ xenial/main libasprintf0v5 amd64 0.19.4-1ubuntu3 [6676 B] Get:2 http://ftpmaster.internal/ubuntu/ xenial/main groff-base amd64 1.22.3-4 [1143 kB] Get:3 http://ftpmaster.internal/ubuntu/ xenial/main bsdmainutils amd64 9.0.6ubuntu1 [175 kB] Get:4 http://ftpmaster.internal/ubuntu/ xenial/main libpipeline1 amd64 1.4.1-1 [24.9 kB] Get:5 http://ftpmaster.internal/ubuntu/ xenial/main man-db amd64 2.7.5-1 [854 kB] Get:6 http://ftpmaster.internal/ubuntu/ xenial/main libsigsegv2 amd64 2.10-4 [14.1 kB] Get:7 http://ftpmaster.internal/ubuntu/ xenial/main libunistring0 amd64 0.9.3-5.2ubuntu1 [279 kB] Get:8 http://ftpmaster.internal/ubuntu/ xenial/main libmagic1 amd64 1:5.25-2ubuntu1 [216 kB] Get:9 http://ftpmaster.internal/ubuntu/ xenial/main file amd64 1:5.25-2ubuntu1 [21.2 kB] Get:10 http://ftpmaster.internal/ubuntu/ xenial/main gettext-base amd64 0.19.4-1ubuntu3 [48.3 kB] Get:11 http://ftpmaster.internal/ubuntu/ xenial/main libglib2.0-0 amd64 2.47.1-1 [1111 kB] Get:12 http://ftpmaster.internal/ubuntu/ xenial/main libicu55 amd64 55.1-6ubuntu1 [7643 kB] Get:13 http://ftpmaster.internal/ubuntu/ xenial/main libxml2 amd64 2.9.2+zdfsg1-4ubuntu1 [695 kB] Get:14 http://ftpmaster.internal/ubuntu/ xenial/main m4 amd64 1.4.17-4 [193 kB] Get:15 http://ftpmaster.internal/ubuntu/ xenial/main autoconf all 2.69-9 [321 kB] Get:16 http://ftpmaster.internal/ubuntu/ xenial/main autotools-dev all 20150820.1 [39.8 kB] Get:17 http://ftpmaster.internal/ubuntu/ xenial/main automake all 1:1.15-1ubuntu1 [511 kB] Get:18 http://ftpmaster.internal/ubuntu/ xenial/main autopoint all 0.19.4-1ubuntu3 [390 kB] Get:19 http://ftpmaster.internal/ubuntu/ xenial/main d-shlibs all 0.62ubuntu1 [9364 B] Get:20 http://ftpmaster.internal/ubuntu/ xenial/main libcroco3 amd64 0.6.9-1 [82.0 kB] Get:21 http://ftpmaster.internal/ubuntu/ xenial/main gettext amd64 0.19.4-1ubuntu3 [857 kB] Get:22 http://ftpmaster.internal/ubuntu/ xenial/main intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:23 http://ftpmaster.internal/ubuntu/ xenial/main po-debconf all 1.0.18 [234 kB] Get:24 http://ftpmaster.internal/ubuntu/ xenial/main libarchive-zip-perl all 1.53-1 [87.0 kB] Get:25 http://ftpmaster.internal/ubuntu/ xenial/main libfile-stripnondeterminism-perl all 0.014-1 [10.1 kB] Get:26 http://ftpmaster.internal/ubuntu/ xenial/main libtimedate-perl all 2.3000-2 [37.5 kB] Get:27 http://ftpmaster.internal/ubuntu/ xenial/main dh-strip-nondeterminism all 0.014-1 [5596 B] Get:28 http://ftpmaster.internal/ubuntu/ xenial/main debhelper all 9.20151117ubuntu1 [742 kB] Get:29 http://ftpmaster.internal/ubuntu/ xenial/main libtool all 2.4.2-1.11 [180 kB] Get:30 http://ftpmaster.internal/ubuntu/ xenial/main dh-autoreconf all 10 [15.3 kB] Get:31 http://ftpmaster.internal/ubuntu/ xenial/main libcurl4-gnutls-dev amd64 7.45.0-1ubuntu1 [259 kB] Get:32 http://ftpmaster.internal/ubuntu/ xenial/main zlib1g-dev amd64 1:1.2.8.dfsg-2ubuntu4 [168 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 16.4 MB in 2s (7364 kB/s) Selecting previously unselected package libasprintf0v5:amd64. 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Processing triggers for libc-bin (2.21-0ubuntu4) ... Setting up libasprintf0v5:amd64 (0.19.4-1ubuntu3) ... Setting up groff-base (1.22.3-4) ... Setting up bsdmainutils (9.0.6ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libpipeline1:amd64 (1.4.1-1) ... Setting up man-db (2.7.5-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libsigsegv2:amd64 (2.10-4) ... Setting up libunistring0:amd64 (0.9.3-5.2ubuntu1) ... Setting up libmagic1:amd64 (1:5.25-2ubuntu1) ... Setting up file (1:5.25-2ubuntu1) ... Setting up gettext-base (0.19.4-1ubuntu3) ... Setting up libglib2.0-0:amd64 (2.47.1-1) ... No schema files found: doing nothing. Setting up libicu55:amd64 (55.1-6ubuntu1) ... Setting up libxml2:amd64 (2.9.2+zdfsg1-4ubuntu1) ... Setting up m4 (1.4.17-4) ... Setting up autoconf (2.69-9) ... Setting up autotools-dev (20150820.1) ... Setting up automake (1:1.15-1ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up autopoint (0.19.4-1ubuntu3) ... Setting up d-shlibs (0.62ubuntu1) ... Setting up libcroco3:amd64 (0.6.9-1) ... Setting up gettext (0.19.4-1ubuntu3) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up po-debconf (1.0.18) ... Setting up libarchive-zip-perl (1.53-1) ... Setting up libfile-stripnondeterminism-perl (0.014-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libtool (2.4.2-1.11) ... Setting up libcurl4-gnutls-dev:amd64 (7.45.0-1ubuntu1) ... Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-2ubuntu4) ... Setting up debhelper (9.20151117ubuntu1) ... Setting up dh-autoreconf (10) ... Setting up sbuild-build-depends-staden-io-lib-dummy (0.invalid.0) ... Setting up dh-strip-nondeterminism (0.014-1) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 3.19.0-33-generic amd64 (x86_64) Toolchain package versions: binutils_2.25.51.20151113-2ubuntu1 dpkg-dev_1.18.3ubuntu1 g++-5_5.2.1-25ubuntu1 gcc-5_5.2.1-25ubuntu1 libc6-dev_2.21-0ubuntu4 libstdc++-5-dev_5.2.1-25ubuntu1 libstdc++6_5.2.1-25ubuntu1 linux-libc-dev_4.2.0-19.23 Package versions: adduser_3.113+nmu3ubuntu4 advancecomp_1.20-1 apt_1.0.10.2ubuntu1 apt-transport-https_1.0.10.2ubuntu1 autoconf_2.69-9 automake_1:1.15-1ubuntu1 autopoint_0.19.4-1ubuntu3 autotools-dev_20150820.1 base-files_9.4ubuntu2 base-passwd_3.5.38 bash_4.3-14ubuntu1 binutils_2.25.51.20151113-2ubuntu1 bsdmainutils_9.0.6ubuntu1 bsdutils_1:2.27.1-1ubuntu3 build-essential_12.1ubuntu2 bzip2_1.0.6-8 ca-certificates_20150426ubuntu1 coreutils_8.23-4ubuntu2 cpp_4:5.2.1-13ubuntu4 cpp-5_5.2.1-25ubuntu1 d-shlibs_0.62ubuntu1 dash_0.5.7-4ubuntu2 debconf_1.5.58ubuntu1 debhelper_9.20151117ubuntu1 debianutils_4.5.1 dh-autoreconf_10 dh-strip-nondeterminism_0.014-1 diffutils_1:3.3-2 dmsetup_2:1.02.99-1ubuntu1 dpkg_1.18.3ubuntu1 dpkg-dev_1.18.3ubuntu1 e2fslibs_1.42.13-1ubuntu1 e2fsprogs_1.42.13-1ubuntu1 fakeroot_1.20.2-1ubuntu1 file_1:5.25-2ubuntu1 findutils_4.4.2-10 g++_4:5.2.1-13ubuntu4 g++-5_5.2.1-25ubuntu1 gcc_4:5.2.1-13ubuntu4 gcc-5_5.2.1-25ubuntu1 gcc-5-base_5.2.1-25ubuntu1 gettext_0.19.4-1ubuntu3 gettext-base_0.19.4-1ubuntu3 gnupg_1.4.18-7ubuntu1 gpgv_1.4.18-7ubuntu1 grep_2.22-1 groff-base_1.22.3-4 gzip_1.6-4ubuntu1 hostname_3.16ubuntu2 init_1.24ubuntu2 initscripts_2.88dsf-59.2ubuntu3 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-2 libapparmor1_2.10-0ubuntu8 libapt-pkg4.16_1.0.10.2ubuntu1 libarchive-zip-perl_1.53-1 libasan2_5.2.1-25ubuntu1 libasn1-8-heimdal_1.6~rc2+dfsg-10ubuntu1 libasprintf0v5_0.19.4-1ubuntu3 libatomic1_5.2.1-25ubuntu1 libattr1_1:2.4.47-2 libaudit-common_1:2.4.4-4ubuntu1 libaudit1_1:2.4.4-4ubuntu1 libblkid1_2.27.1-1ubuntu3 libbz2-1.0_1.0.6-8 libc-bin_2.21-0ubuntu4 libc-dev-bin_2.21-0ubuntu4 libc6_2.21-0ubuntu4 libc6-dev_2.21-0ubuntu4 libcap2_1:2.24-12 libcap2-bin_1:2.24-12 libcc1-0_5.2.1-25ubuntu1 libcilkrts5_5.2.1-25ubuntu1 libcomerr2_1.42.13-1ubuntu1 libcroco3_0.6.9-1 libcryptsetup4_2:1.6.6-5ubuntu2 libcurl3-gnutls_7.45.0-1ubuntu1 libcurl4-gnutls-dev_7.45.0-1ubuntu1 libdb5.3_5.3.28-11 libdbus-1-3_1.10.4-1ubuntu2 libdebconfclient0_0.192ubuntu1 libdevmapper1.02.1_2:1.02.99-1ubuntu1 libdpkg-perl_1.18.3ubuntu1 libfakeroot_1.20.2-1ubuntu1 libfdisk1_2.27.1-1ubuntu3 libffi6_3.2.1-3 libfile-stripnondeterminism-perl_0.014-1 libgcc-5-dev_5.2.1-25ubuntu1 libgcc1_1:5.2.1-25ubuntu1 libgcrypt20_1.6.4-3 libgdbm3_1.8.3-13.1 libglib2.0-0_2.47.1-1 libgmp10_2:6.1.0+dfsg-2 libgnutls-deb0-28_3.3.18-1ubuntu1 libgomp1_5.2.1-25ubuntu1 libgpg-error0_1.20-1 libgssapi-krb5-2_1.13.2+dfsg-4 libgssapi3-heimdal_1.6~rc2+dfsg-10ubuntu1 libhcrypto4-heimdal_1.6~rc2+dfsg-10ubuntu1 libheimbase1-heimdal_1.6~rc2+dfsg-10ubuntu1 libheimntlm0-heimdal_1.6~rc2+dfsg-10ubuntu1 libhogweed4_3.1.1-4 libhx509-5-heimdal_1.6~rc2+dfsg-10ubuntu1 libicu55_55.1-6ubuntu1 libidn11_1.32-3ubuntu1 libisl13_0.14-2 libisl15_0.15-3 libitm1_5.2.1-25ubuntu1 libk5crypto3_1.13.2+dfsg-4 libkeyutils1_1.5.9-8 libkmod2_21-1ubuntu1 libkrb5-26-heimdal_1.6~rc2+dfsg-10ubuntu1 libkrb5-3_1.13.2+dfsg-4 libkrb5support0_1.13.2+dfsg-4 libldap-2.4-2_2.4.41+dfsg-1ubuntu2 liblockfile-bin_1.09-6ubuntu1 liblockfile1_1.09-6ubuntu1 liblsan0_5.2.1-25ubuntu1 liblzma5_5.1.1alpha+20120614-2ubuntu2 libmagic1_1:5.25-2ubuntu1 libmount1_2.27.1-1ubuntu3 libmpc3_1.0.3-1 libmpfr4_3.1.3-1 libmpx0_5.2.1-25ubuntu1 libncurses5_5.9+20150516-2ubuntu1 libncursesw5_5.9+20150516-2ubuntu1 libnettle6_3.1.1-4 libnih-dbus1_1.0.3-4ubuntu27 libnih1_1.0.3-4ubuntu27 libp11-kit0_0.23.1-3 libpam-modules_1.1.8-3.1ubuntu3 libpam-modules-bin_1.1.8-3.1ubuntu3 libpam-runtime_1.1.8-3.1ubuntu3 libpam0g_1.1.8-3.1ubuntu3 libpcre3_2:8.35-7.1ubuntu1 libpipeline1_1.4.1-1 libpng12-0_1.2.54-1 libprocps3_1:3.3.9-1ubuntu8 libquadmath0_5.2.1-25ubuntu1 libreadline6_6.3-8ubuntu1 libroken18-heimdal_1.6~rc2+dfsg-10ubuntu1 librtmp1_2.4+20150115.gita107cef-1build1 libsasl2-2_2.1.26.dfsg1-14 libsasl2-modules-db_2.1.26.dfsg1-14 libseccomp2_2.2.3-2ubuntu1 libselinux1_2.4-3 libsemanage-common_2.4-3 libsemanage1_2.4-3 libsepol1_2.4-2 libsigsegv2_2.10-4 libslang2_2.3.0-2ubuntu1 libsmartcols1_2.27.1-1ubuntu3 libsqlite3-0_3.9.2-1 libss2_1.42.13-1ubuntu1 libssl1.0.0_1.0.2d-0ubuntu2 libstdc++-5-dev_5.2.1-25ubuntu1 libstdc++6_5.2.1-25ubuntu1 libsystemd0_228-2ubuntu1 libtasn1-6_4.7-2 libtimedate-perl_2.3000-2 libtinfo5_5.9+20150516-2ubuntu1 libtool_2.4.2-1.11 libtsan0_5.2.1-25ubuntu1 libubsan0_5.2.1-25ubuntu1 libudev1_228-2ubuntu1 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-27 libustr-1.0-1_1.0.4-5 libuuid1_2.27.1-1ubuntu3 libwind0-heimdal_1.6~rc2+dfsg-10ubuntu1 libxml2_2.9.2+zdfsg1-4ubuntu1 linux-libc-dev_4.2.0-19.23 lockfile-progs_0.1.17 login_1:4.1.5.1-1.1ubuntu7 lsb-base_9.20150917ubuntu1 m4_1.4.17-4 make_4.0-8.2 man-db_2.7.5-1 mawk_1.3.3-17ubuntu2 mount_2.27.1-1ubuntu3 multiarch-support_2.21-0ubuntu4 ncurses-base_5.9+20150516-2ubuntu1 ncurses-bin_5.9+20150516-2ubuntu1 openssl_1.0.2d-0ubuntu2 optipng_0.7.5-1 passwd_1:4.1.5.1-1.1ubuntu7 patch_2.7.5-1 perl_5.20.2-6 perl-base_5.20.2-6 perl-modules_5.20.2-6 pkg-create-dbgsym_0.70 pkgbinarymangler_122 po-debconf_1.0.18 policyrcd-script-zg2_0.1-2 procps_1:3.3.9-1ubuntu8 readline-common_6.3-8ubuntu1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-staden-io-lib-dummy_0.invalid.0 sed_4.2.2-6.1 sensible-utils_0.0.9 systemd_228-2ubuntu1 systemd-sysv_228-2ubuntu1 sysv-rc_2.88dsf-59.2ubuntu3 sysvinit-utils_2.88dsf-59.2ubuntu3 tar_1.28-2.1 tzdata_2015g-1 ubuntu-keyring_2012.05.19 udev_228-2ubuntu1 util-linux_2.27.1-1ubuntu3 xz-utils_5.1.1alpha+20120614-2ubuntu2 zlib1g_1:1.2.8.dfsg-2ubuntu4 zlib1g-dev_1:1.2.8.dfsg-2ubuntu4 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: Signature made Tue Nov 24 19:25:46 2015 UTC using RSA key ID D1C646D1 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./staden-io-lib_1.14.6-2.dsc dpkg-source: info: extracting staden-io-lib in staden-io-lib-1.14.6 dpkg-source: info: unpacking staden-io-lib_1.14.6.orig.tar.gz dpkg-source: info: unpacking staden-io-lib_1.14.6-2.debian.tar.xz dpkg-source: info: applying pathmax.patch Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── DEB_BUILD_OPTIONS=parallel=4 HOME=/home/buildd LANG=C LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/«PKGBUILDDIR» SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /«CHROOT» su buildd -s /bin/sh -c cd '/«PKGBUILDDIR»' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ───────────────── dpkg-buildpackage: source package staden-io-lib dpkg-buildpackage: source version 1.14.6-2 dpkg-buildpackage: source distribution unstable dpkg-source --before-build staden-io-lib-1.14.6 dpkg-buildpackage: host architecture amd64 fakeroot debian/rules clean dh clean --with autoreconf dh_testdir debian/rules override_dh_auto_clean make[1]: Entering directory '/«PKGBUILDDIR»' dh_auto_clean rm -f tests/.done tests/data/ce\#sorted.sam tests/data/ce\#unsorted.sam make[1]: Leaving directory '/«PKGBUILDDIR»' dh_autoreconf_clean dh_clean debian/rules build dh build --with autoreconf dh_testdir dh_autoreconf aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in' libtoolize: putting auxiliary files in `.'. libtoolize: copying file `./ltmain.sh' libtoolize: Consider adding `AC_CONFIG_MACRO_DIR([m4])' to configure.in and libtoolize: rerunning libtoolize, to keep the correct libtool macros in-tree. libtoolize: Consider adding `-I m4' to ACLOCAL_AMFLAGS in Makefile.am. aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in' automake: warning: autoconf input should be named 'configure.ac', not 'configure.in' io_lib/Makefile.am:139: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') automake: warning: autoconf input should be named 'configure.ac', not 'configure.in' progs/Makefile.am:147: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') tests/Makefile.am:60: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') parallel-tests: installing './test-driver' dh_auto_configure ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --libexecdir=\${prefix}/lib/x86_64-linux-gnu --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking for style of include used by make... GNU checking dependency style of gcc... none checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for grep that handles long lines and -e... (cached) /bin/grep checking for C compiler warning flags... -Wall checking for gawk... (cached) mawk checking for curl-config... /usr/bin/curl-config checking for the version of libcurl... 7.45.0 checking whether libcurl just needs -lcurl... yes checking whether libcurl is usable... yes checking for curl_free... yes checking for inflateEnd in -lz... yes checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking for library containing gethostbyname... none required checking for library containing socket... none required checking for BZ2_bzBuffToBuffCompress in -lbz2... no checking for lzma_easy_buffer_encode in -llzma... no checking whether byte ordering is bigendian... no checking for ANSI C header files... (cached) yes checking for sys/wait.h that is POSIX.1 compatible... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for unistd.h... (cached) yes checking for zlib.h... (cached) yes checking stdio_ext.h usability... yes checking stdio_ext.h presence... yes checking for stdio_ext.h... yes checking whether byte ordering is bigendian... (cached) no checking size of short... 2 checking size of int... 4 checking size of long... 8 checking for inline... inline checking for mode_t... yes checking for fileno... yes checking for fstat... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for _LARGEFILE_SOURCE value needed for large files... no checking for stdlib.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/param.h... yes checking for getpagesize... yes checking for working mmap... yes checking for library containing pthread_join... -lpthread checking for library containing cos... -lm checking for strdup... yes checking for fsync... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating io_lib/Makefile config.status: creating progs/Makefile config.status: creating tests/Makefile config.status: creating io_lib-config config.status: creating io_lib/os.h config.status: creating io_lib_config.h config.status: executing depfiles commands config.status: executing libtool commands dh_auto_build make -j1 make[1]: Entering directory '/«PKGBUILDDIR»' make all-recursive make[2]: Entering directory '/«PKGBUILDDIR»' Making all in io_lib make[3]: Entering directory '/«PKGBUILDDIR»/io_lib' /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-Read.lo `test -f 'Read.c' || echo './'`Read.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c Read.c -fPIC -DPIC -o .libs/libstaden_read_la-Read.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c Read.c -o libstaden_read_la-Read.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-scf_extras.lo `test -f 'scf_extras.c' || echo './'`scf_extras.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c scf_extras.c -fPIC -DPIC -o 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-I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-deflate_interlaced.lo `test -f 'deflate_interlaced.c' || echo './'`deflate_interlaced.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c deflate_interlaced.c -fPIC -DPIC -o .libs/libstaden_read_la-deflate_interlaced.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c deflate_interlaced.c -o libstaden_read_la-deflate_interlaced.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-fpoint.lo `test -f 'fpoint.c' || echo './'`fpoint.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 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../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-seqIOALF.lo `test -f 'seqIOALF.c' || echo './'`seqIOALF.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c seqIOALF.c -fPIC -DPIC -o .libs/libstaden_read_la-seqIOALF.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c seqIOALF.c -o libstaden_read_la-seqIOALF.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-expFileIO.lo `test -f 'expFileIO.c' || echo './'`expFileIO.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c expFileIO.c -fPIC -DPIC -o .libs/libstaden_read_la-expFileIO.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c expFileIO.c -o libstaden_read_la-expFileIO.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-seqIOPlain.lo `test -f 'seqIOPlain.c' || echo './'`seqIOPlain.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c seqIOPlain.c -fPIC -DPIC -o .libs/libstaden_read_la-seqIOPlain.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c seqIOPlain.c -o libstaden_read_la-seqIOPlain.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-misc_scf.lo `test -f 'misc_scf.c' || echo './'`misc_scf.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c misc_scf.c -fPIC -DPIC -o .libs/libstaden_read_la-misc_scf.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c misc_scf.c -o libstaden_read_la-misc_scf.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-read_scf.lo `test -f 'read_scf.c' || echo './'`read_scf.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c read_scf.c -fPIC -DPIC -o .libs/libstaden_read_la-read_scf.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c read_scf.c -o libstaden_read_la-read_scf.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-write_scf.lo `test -f 'write_scf.c' || echo './'`write_scf.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c write_scf.c -fPIC -DPIC -o .libs/libstaden_read_la-write_scf.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c write_scf.c -o 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-DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-compress.lo `test -f 'compress.c' || echo './'`compress.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c compress.c -fPIC -DPIC -o .libs/libstaden_read_la-compress.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c compress.c -o libstaden_read_la-compress.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-error.lo `test -f 'error.c' || echo './'`error.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security 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thread_pool.c -o libstaden_read_la-thread_pool.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-binning.lo `test -f 'binning.c' || echo './'`binning.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c binning.c -fPIC -DPIC -o .libs/libstaden_read_la-binning.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c binning.c -o libstaden_read_la-binning.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-cram_bambam.lo `test -f 'cram_bambam.c' || echo './'`cram_bambam.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c cram_bambam.c -fPIC -DPIC -o .libs/libstaden_read_la-cram_bambam.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c cram_bambam.c -o libstaden_read_la-cram_bambam.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -version-info 11:5:0 -Wl,-Bsymbolic-functions -Wl,-z,relro -o libstaden-read.la -rpath /usr/lib/x86_64-linux-gnu libstaden_read_la-Read.lo libstaden_read_la-scf_extras.lo libstaden_read_la-translate.lo libstaden_read_la-compression.lo libstaden_read_la-ztr.lo libstaden_read_la-ztr_translate.lo libstaden_read_la-deflate_interlaced.lo libstaden_read_la-fpoint.lo libstaden_read_la-seqIOABI.lo libstaden_read_la-seqIOALF.lo libstaden_read_la-expFileIO.lo libstaden_read_la-seqIOPlain.lo libstaden_read_la-misc_scf.lo libstaden_read_la-read_scf.lo libstaden_read_la-write_scf.lo libstaden_read_la-sff.lo libstaden_read_la-srf.lo libstaden_read_la-array.lo libstaden_read_la-compress.lo libstaden_read_la-error.lo libstaden_read_la-files.lo libstaden_read_la-find.lo libstaden_read_la-mach-io.lo libstaden_read_la-open_trace_file.lo libstaden_read_la-read_alloc.lo libstaden_read_la-strings.lo libstaden_read_la-traceType.lo libstaden_read_la-xalloc.lo libstaden_read_la-vlen.lo libstaden_read_la-hash_table.lo libstaden_read_la-jenkins_lookup3.lo libstaden_read_la-mFILE.lo libstaden_read_la-pooled_alloc.lo libstaden_read_la-bam.lo libstaden_read_la-sam_header.lo libstaden_read_la-rANS_static.lo libstaden_read_la-cram_codecs.lo libstaden_read_la-cram_encode.lo libstaden_read_la-cram_decode.lo libstaden_read_la-cram_stats.lo libstaden_read_la-cram_io.lo libstaden_read_la-cram_index.lo libstaden_read_la-zfio.lo libstaden_read_la-dstring.lo libstaden_read_la-string_alloc.lo libstaden_read_la-md5.lo libstaden_read_la-scram.lo libstaden_read_la-thread_pool.lo libstaden_read_la-binning.lo libstaden_read_la-cram_bambam.lo -lz -lcurl -lm -lpthread libtool: link: gcc -shared -fPIC -DPIC .libs/libstaden_read_la-Read.o .libs/libstaden_read_la-scf_extras.o .libs/libstaden_read_la-translate.o .libs/libstaden_read_la-compression.o .libs/libstaden_read_la-ztr.o .libs/libstaden_read_la-ztr_translate.o .libs/libstaden_read_la-deflate_interlaced.o .libs/libstaden_read_la-fpoint.o .libs/libstaden_read_la-seqIOABI.o .libs/libstaden_read_la-seqIOALF.o .libs/libstaden_read_la-expFileIO.o .libs/libstaden_read_la-seqIOPlain.o .libs/libstaden_read_la-misc_scf.o .libs/libstaden_read_la-read_scf.o .libs/libstaden_read_la-write_scf.o .libs/libstaden_read_la-sff.o .libs/libstaden_read_la-srf.o .libs/libstaden_read_la-array.o .libs/libstaden_read_la-compress.o .libs/libstaden_read_la-error.o .libs/libstaden_read_la-files.o .libs/libstaden_read_la-find.o .libs/libstaden_read_la-mach-io.o .libs/libstaden_read_la-open_trace_file.o .libs/libstaden_read_la-read_alloc.o .libs/libstaden_read_la-strings.o .libs/libstaden_read_la-traceType.o .libs/libstaden_read_la-xalloc.o .libs/libstaden_read_la-vlen.o .libs/libstaden_read_la-hash_table.o .libs/libstaden_read_la-jenkins_lookup3.o .libs/libstaden_read_la-mFILE.o .libs/libstaden_read_la-pooled_alloc.o .libs/libstaden_read_la-bam.o .libs/libstaden_read_la-sam_header.o .libs/libstaden_read_la-rANS_static.o .libs/libstaden_read_la-cram_codecs.o .libs/libstaden_read_la-cram_encode.o .libs/libstaden_read_la-cram_decode.o .libs/libstaden_read_la-cram_stats.o .libs/libstaden_read_la-cram_io.o .libs/libstaden_read_la-cram_index.o .libs/libstaden_read_la-zfio.o .libs/libstaden_read_la-dstring.o .libs/libstaden_read_la-string_alloc.o .libs/libstaden_read_la-md5.o .libs/libstaden_read_la-scram.o .libs/libstaden_read_la-thread_pool.o .libs/libstaden_read_la-binning.o .libs/libstaden_read_la-cram_bambam.o -lz /usr/lib/x86_64-linux-gnu/libcurl-gnutls.so -lm -lpthread -O2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -pthread -Wl,-soname -Wl,libstaden-read.so.11 -o .libs/libstaden-read.so.11.0.5 libtool: link: (cd ".libs" && rm -f "libstaden-read.so.11" && ln -s "libstaden-read.so.11.0.5" "libstaden-read.so.11") libtool: link: (cd ".libs" && rm -f "libstaden-read.so" && ln -s "libstaden-read.so.11.0.5" "libstaden-read.so") libtool: link: ar cru .libs/libstaden-read.a libstaden_read_la-Read.o libstaden_read_la-scf_extras.o libstaden_read_la-translate.o libstaden_read_la-compression.o libstaden_read_la-ztr.o libstaden_read_la-ztr_translate.o libstaden_read_la-deflate_interlaced.o libstaden_read_la-fpoint.o libstaden_read_la-seqIOABI.o libstaden_read_la-seqIOALF.o libstaden_read_la-expFileIO.o libstaden_read_la-seqIOPlain.o libstaden_read_la-misc_scf.o libstaden_read_la-read_scf.o libstaden_read_la-write_scf.o libstaden_read_la-sff.o libstaden_read_la-srf.o libstaden_read_la-array.o libstaden_read_la-compress.o libstaden_read_la-error.o libstaden_read_la-files.o libstaden_read_la-find.o libstaden_read_la-mach-io.o libstaden_read_la-open_trace_file.o libstaden_read_la-read_alloc.o libstaden_read_la-strings.o libstaden_read_la-traceType.o libstaden_read_la-xalloc.o libstaden_read_la-vlen.o libstaden_read_la-hash_table.o libstaden_read_la-jenkins_lookup3.o libstaden_read_la-mFILE.o libstaden_read_la-pooled_alloc.o libstaden_read_la-bam.o libstaden_read_la-sam_header.o libstaden_read_la-rANS_static.o libstaden_read_la-cram_codecs.o libstaden_read_la-cram_encode.o libstaden_read_la-cram_decode.o libstaden_read_la-cram_stats.o libstaden_read_la-cram_io.o libstaden_read_la-cram_index.o libstaden_read_la-zfio.o libstaden_read_la-dstring.o libstaden_read_la-string_alloc.o libstaden_read_la-md5.o libstaden_read_la-scram.o libstaden_read_la-thread_pool.o libstaden_read_la-binning.o libstaden_read_la-cram_bambam.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libstaden-read.a libtool: link: ( cd ".libs" && rm -f "libstaden-read.la" && ln -s "../libstaden-read.la" "libstaden-read.la" ) make[3]: Leaving directory '/«PKGBUILDDIR»/io_lib' Making all in progs make[3]: Entering directory '/«PKGBUILDDIR»/progs' gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o convert_trace.o convert_trace.c /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o convert_trace convert_trace.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/convert_trace convert_trace.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o makeSCF.o makeSCF.c /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o makeSCF makeSCF.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/makeSCF makeSCF.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o extract_seq.o extract_seq.c /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o extract_seq extract_seq.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/extract_seq extract_seq.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o extract_qual.o extract_qual.c /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o extract_qual extract_qual.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/extract_qual extract_qual.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o extract_fastq.o extract_fastq.c /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o extract_fastq extract_fastq.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/extract_fastq extract_fastq.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o index_tar.o index_tar.c /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o index_tar index_tar.o -lm -lpthread libtool: link: gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o index_tar index_tar.o -lm -lpthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o scf_dump.o scf_dump.c /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o scf_dump scf_dump.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/scf_dump scf_dump.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o scf_info.o scf_info.c /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o scf_info scf_info.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/scf_info scf_info.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o scf_update.o scf_update.c /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o scf_update scf_update.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/scf_update scf_update.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o get_comment.o get_comment.c /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o get_comment get_comment.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/get_comment get_comment.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o hash_tar.o hash_tar.c /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o hash_tar hash_tar.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/hash_tar hash_tar.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o hash_extract.o hash_extract.c /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o hash_extract hash_extract.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/hash_extract hash_extract.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o hash_list.o hash_list.c /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o hash_list hash_list.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/hash_list hash_list.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o trace_dump.o trace_dump.c /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o trace_dump trace_dump.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/trace_dump trace_dump.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o hash_sff.o hash_sff.c /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o hash_sff hash_sff.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/hash_sff hash_sff.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o append_sff.o append_sff.c /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o append_sff append_sff.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/append_sff append_sff.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o ztr_dump.o ztr_dump.c /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o ztr_dump ztr_dump.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/ztr_dump ztr_dump.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o srf_dump_all.o srf_dump_all.c /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o srf_dump_all srf_dump_all.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/srf_dump_all srf_dump_all.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o srf_index_hash.o srf_index_hash.c /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o srf_index_hash srf_index_hash.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/srf_index_hash srf_index_hash.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o srf_extract_linear.o srf_extract_linear.c /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o srf_extract_linear srf_extract_linear.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/srf_extract_linear srf_extract_linear.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o srf_extract_hash.o srf_extract_hash.c /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o srf_extract_hash srf_extract_hash.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/srf_extract_hash srf_extract_hash.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o srf2fastq.o srf2fastq.c /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o srf2fastq srf2fastq.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/srf2fastq srf2fastq.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o srf2fasta.o srf2fasta.c /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o srf2fasta srf2fasta.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/srf2fasta srf2fasta.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o srf_filter.o srf_filter.c /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o srf_filter srf_filter.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/srf_filter srf_filter.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o srf_info.o srf_info.c /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o srf_info srf_info.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/srf_info srf_info.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o srf_list.o srf_list.c /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o srf_list srf_list.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/srf_list srf_list.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o hash_exp.o hash_exp.c /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o hash_exp hash_exp.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/hash_exp hash_exp.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o cram_dump.o cram_dump.c /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o cram_dump cram_dump.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/cram_dump cram_dump.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o cram_index.o cram_index.c /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o cram_index cram_index.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/cram_index cram_index.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o scramble.o scramble.c /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o scramble scramble.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/scramble scramble.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o scram_merge.o scram_merge.c /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o scram_merge scram_merge.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/scram_merge scram_merge.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o scram_pileup.o scram_pileup.c /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o scram_pileup scram_pileup.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/scram_pileup scram_pileup.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o scram_flagstat.o scram_flagstat.c /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o scram_flagstat scram_flagstat.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/scram_flagstat scram_flagstat.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o scram_test.o scram_test.c /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o scram_test scram_test.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/scram_test scram_test.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o cram_size.o cram_size.c /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o cram_size cram_size.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/cram_size cram_size.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread make[3]: Leaving directory '/«PKGBUILDDIR»/progs' Making all in tests make[3]: Entering directory '/«PKGBUILDDIR»/tests' gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o cram_io_test.o cram_io_test.c /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o cram_io_test cram_io_test.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/cram_io_test cram_io_test.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread make[3]: Leaving directory '/«PKGBUILDDIR»/tests' make[3]: Entering directory '/«PKGBUILDDIR»' make[3]: Leaving directory '/«PKGBUILDDIR»' make[2]: Leaving directory '/«PKGBUILDDIR»' make[1]: Leaving directory '/«PKGBUILDDIR»' dh_auto_test make -j1 check make[1]: Entering directory '/«PKGBUILDDIR»' Making check in io_lib make[2]: Entering directory '/«PKGBUILDDIR»/io_lib' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/«PKGBUILDDIR»/io_lib' Making check in progs make[2]: Entering directory '/«PKGBUILDDIR»/progs' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/«PKGBUILDDIR»/progs' Making check in tests make[2]: Entering directory '/«PKGBUILDDIR»/tests' make check-TESTS make[3]: Entering directory '/«PKGBUILDDIR»/tests' make[4]: Entering directory '/«PKGBUILDDIR»/tests' PASS: srf2fasta.test PASS: srf2fastq.test PASS: srf_info.test PASS: srf_filter.test PASS: srf_index.test PASS: scram.test PASS: scram_mt.test PASS: scram_v3.test PASS: cram_io.test PASS: java.test ============================================================================ Testsuite summary for io_lib 1.14.6 ============================================================================ # TOTAL: 10 # PASS: 10 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[4]: Leaving directory '/«PKGBUILDDIR»/tests' make[3]: Leaving directory '/«PKGBUILDDIR»/tests' make[2]: Leaving directory '/«PKGBUILDDIR»/tests' make[2]: Entering directory '/«PKGBUILDDIR»' make[2]: Leaving directory '/«PKGBUILDDIR»' make[1]: Leaving directory '/«PKGBUILDDIR»' fakeroot debian/rules binary dh binary --with autoreconf dh_testroot dh_prep dh_auto_install make -j1 install DESTDIR=/«PKGBUILDDIR»/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/«PKGBUILDDIR»' Making install in io_lib make[2]: Entering directory '/«PKGBUILDDIR»/io_lib' make[3]: Entering directory '/«PKGBUILDDIR»/io_lib' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libstaden-read.la '/«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libstaden-read.so.11.0.5 /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu/libstaden-read.so.11.0.5 libtool: install: (cd /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libstaden-read.so.11.0.5 libstaden-read.so.11 || { rm -f libstaden-read.so.11 && ln -s libstaden-read.so.11.0.5 libstaden-read.so.11; }; }) libtool: install: (cd /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libstaden-read.so.11.0.5 libstaden-read.so || { rm -f libstaden-read.so && ln -s libstaden-read.so.11.0.5 libstaden-read.so; }; }) libtool: install: /usr/bin/install -c .libs/libstaden-read.lai /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu/libstaden-read.la libtool: install: /usr/bin/install -c .libs/libstaden-read.a /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu/libstaden-read.a libtool: install: chmod 644 /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu/libstaden-read.a libtool: install: ranlib /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu/libstaden-read.a libtool: install: warning: remember to run `libtool --finish /usr/lib/x86_64-linux-gnu' make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/«PKGBUILDDIR»/io_lib' make[2]: Leaving directory '/«PKGBUILDDIR»/io_lib' Making install in progs make[2]: Entering directory '/«PKGBUILDDIR»/progs' make[3]: Entering directory '/«PKGBUILDDIR»/progs' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/bin' /bin/bash ../libtool --mode=install /usr/bin/install -c convert_trace makeSCF extract_seq extract_qual extract_fastq index_tar scf_dump scf_info scf_update get_comment hash_tar hash_extract hash_list trace_dump hash_sff append_sff ztr_dump srf_dump_all srf_index_hash srf_extract_linear srf_extract_hash srf2fastq srf2fasta srf_filter srf_info srf_list hash_exp cram_dump cram_index scramble scram_merge scram_pileup scram_flagstat scram_test cram_size '/«PKGBUILDDIR»/debian/tmp/usr/bin' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/convert_trace /«PKGBUILDDIR»/debian/tmp/usr/bin/convert_trace libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/makeSCF /«PKGBUILDDIR»/debian/tmp/usr/bin/makeSCF libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/extract_seq /«PKGBUILDDIR»/debian/tmp/usr/bin/extract_seq libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/extract_qual /«PKGBUILDDIR»/debian/tmp/usr/bin/extract_qual libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/extract_fastq /«PKGBUILDDIR»/debian/tmp/usr/bin/extract_fastq libtool: install: /usr/bin/install -c index_tar /«PKGBUILDDIR»/debian/tmp/usr/bin/index_tar libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/scf_dump /«PKGBUILDDIR»/debian/tmp/usr/bin/scf_dump libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/scf_info /«PKGBUILDDIR»/debian/tmp/usr/bin/scf_info libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/scf_update /«PKGBUILDDIR»/debian/tmp/usr/bin/scf_update libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/get_comment /«PKGBUILDDIR»/debian/tmp/usr/bin/get_comment libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/hash_tar /«PKGBUILDDIR»/debian/tmp/usr/bin/hash_tar libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/hash_extract /«PKGBUILDDIR»/debian/tmp/usr/bin/hash_extract libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/hash_list /«PKGBUILDDIR»/debian/tmp/usr/bin/hash_list libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/trace_dump /«PKGBUILDDIR»/debian/tmp/usr/bin/trace_dump libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/hash_sff /«PKGBUILDDIR»/debian/tmp/usr/bin/hash_sff libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/append_sff /«PKGBUILDDIR»/debian/tmp/usr/bin/append_sff libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/ztr_dump /«PKGBUILDDIR»/debian/tmp/usr/bin/ztr_dump libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/srf_dump_all /«PKGBUILDDIR»/debian/tmp/usr/bin/srf_dump_all libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/srf_index_hash /«PKGBUILDDIR»/debian/tmp/usr/bin/srf_index_hash libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/srf_extract_linear /«PKGBUILDDIR»/debian/tmp/usr/bin/srf_extract_linear libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/srf_extract_hash /«PKGBUILDDIR»/debian/tmp/usr/bin/srf_extract_hash libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/srf2fastq /«PKGBUILDDIR»/debian/tmp/usr/bin/srf2fastq libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/srf2fasta /«PKGBUILDDIR»/debian/tmp/usr/bin/srf2fasta libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/srf_filter /«PKGBUILDDIR»/debian/tmp/usr/bin/srf_filter libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/srf_info /«PKGBUILDDIR»/debian/tmp/usr/bin/srf_info libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/srf_list /«PKGBUILDDIR»/debian/tmp/usr/bin/srf_list libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/hash_exp /«PKGBUILDDIR»/debian/tmp/usr/bin/hash_exp libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/cram_dump /«PKGBUILDDIR»/debian/tmp/usr/bin/cram_dump libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/cram_index /«PKGBUILDDIR»/debian/tmp/usr/bin/cram_index libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/scramble /«PKGBUILDDIR»/debian/tmp/usr/bin/scramble libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/scram_merge /«PKGBUILDDIR»/debian/tmp/usr/bin/scram_merge libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/scram_pileup /«PKGBUILDDIR»/debian/tmp/usr/bin/scram_pileup libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/scram_flagstat /«PKGBUILDDIR»/debian/tmp/usr/bin/scram_flagstat libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/scram_test /«PKGBUILDDIR»/debian/tmp/usr/bin/scram_test libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/cram_size /«PKGBUILDDIR»/debian/tmp/usr/bin/cram_size make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/«PKGBUILDDIR»/progs' make[2]: Leaving directory '/«PKGBUILDDIR»/progs' Making install in tests make[2]: Entering directory '/«PKGBUILDDIR»/tests' make[3]: Entering directory '/«PKGBUILDDIR»/tests' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/«PKGBUILDDIR»/tests' make[2]: Leaving directory '/«PKGBUILDDIR»/tests' make[2]: Entering directory '/«PKGBUILDDIR»' make[3]: Entering directory '/«PKGBUILDDIR»' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/bin' /usr/bin/install -c io_lib-config '/«PKGBUILDDIR»/debian/tmp/usr/bin' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/share/man/man1' /usr/bin/install -c -m 644 man/man1/srf_index_hash.1 man/man1/srf_info.1 man/man1/srf_list.1 man/man1/srf2fasta.1 man/man1/srf2fastq.1 man/man1/scramble.1 '/«PKGBUILDDIR»/debian/tmp/usr/share/man/man1' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/share/man/man3' /usr/bin/install -c -m 644 man/man3/read_scf_header.3 man/man3/read_allocate.3 man/man3/ExperimentFile.3 man/man3/write_reading.3 man/man3/write_scf.3 man/man3/read_deallocate.3 man/man3/fwrite_reading.3 man/man3/read2scf.3 man/man3/scf2read.3 man/man3/fwrite_scf.3 man/man3/write_scf_header.3 man/man3/read_reading.3 man/man3/read_scf.3 man/man3/exp2read.3 man/man3/fread_reading.3 man/man3/read2exp.3 man/man3/fread_scf.3 '/«PKGBUILDDIR»/debian/tmp/usr/share/man/man3' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/share/man/man4' /usr/bin/install -c -m 644 man/man4/Read.4 '/«PKGBUILDDIR»/debian/tmp/usr/share/man/man4' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/io_lib' /usr/bin/install -c -m 644 io_lib/Read.h io_lib/scf_extras.h io_lib/translate.h io_lib/abi.h io_lib/fpoint.h io_lib/seqIOABI.h io_lib/alf.h io_lib/expFileIO.h io_lib/plain.h io_lib/scf.h io_lib/sff.h io_lib/array.h io_lib/compress.h io_lib/error.h io_lib/mach-io.h io_lib/misc.h io_lib/open_trace_file.h io_lib/tar_format.h io_lib/traceType.h io_lib/xalloc.h io_lib/mFILE.h io_lib/stdio_hack.h io_lib/vlen.h io_lib/hash_table.h io_lib/jenkins_lookup3.h io_lib/os.h io_lib/compression.h io_lib/ztr.h io_lib/deflate_interlaced.h io_lib/srf.h io_lib/pooled_alloc.h io_lib/cram.h io_lib/cram_structs.h io_lib/cram_io.h io_lib/cram_encode.h io_lib/cram_decode.h io_lib/cram_codecs.h io_lib/cram_index.h io_lib/cram_stats.h io_lib/zfio.h '/«PKGBUILDDIR»/debian/tmp/usr/include/io_lib' /usr/bin/install -c -m 644 io_lib/scram.h io_lib/bam.h io_lib/sam_header.h io_lib/dstring.h io_lib/string_alloc.h io_lib_config.h io_lib/md5.h io_lib/thread_pool.h io_lib/binning.h '/«PKGBUILDDIR»/debian/tmp/usr/include/io_lib' make[3]: Leaving directory '/«PKGBUILDDIR»' make[2]: Leaving directory '/«PKGBUILDDIR»' make[1]: Leaving directory '/«PKGBUILDDIR»' debian/rules override_dh_install-arch make[1]: Entering directory '/«PKGBUILDDIR»' dh_install -a mkdir -p /«PKGBUILDDIR»/debian/libstaden-read-dev/usr/bin mv /«PKGBUILDDIR»/debian/staden-io-lib-utils/usr/bin/io_lib-config /«PKGBUILDDIR»/debian/libstaden-read-dev/usr/bin # Call d-shlibmove to comply with library packaging guide d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev "debian/tmp/usr/include" usr \ debian/tmp/usr/lib/*/libstaden-read.so Library package automatic movement utility --> libcurl4-gnutls-dev package exists. --> zlib1g-dev package exists. set -e install -d -m 755 debian/libstaden-read-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libstaden-read11/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libstaden-read.a debian/libstaden-read-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libstaden-read.so debian/libstaden-read-dev/usr/lib/x86_64-linux-gnu mv /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu/libstaden-read.so.11 debian/libstaden-read11/usr/lib/x86_64-linux-gnu mv /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu/libstaden-read.so.11.0.5 debian/libstaden-read11/usr/lib/x86_64-linux-gnu PKGDEV=libstaden-read-dev PKGSHL=libstaden-read11 install -d -m 755 debian/libstaden-read-dev/usr mv debian/tmp/usr/include debian/libstaden-read-dev/usr #dh_installman # manpages need some post editing but in case it could be automated, this code would help # mkdir -p # help2man --no-discard-stderr --no-info --help-option='""' \ # --name='filter SRF files for various purposes' \ # --version-string="" \ # /«PKGBUILDDIR»/debian//usr/bin/srf_filter > /srf_filter.1 make[1]: Leaving directory '/«PKGBUILDDIR»' debian/rules override_dh_install-indep make[1]: Entering directory '/«PKGBUILDDIR»' dh_install -i mkdir -p debian/staden-io-lib-examples/usr/share/doc/staden-io-lib/test for tst in `ls tests/*.test` ; do \ sed -e 's#\.\./$top_builddir/progs/#/usr/bin/#' -e 's#$top_builddir/progs/#/usr/bin/#' ${tst} > debian/staden-io-lib-examples/usr/share/doc/staden-io-lib/test/`basename ${tst}` ; \ done # remove autogenerated big data files rm -f debian/staden-io-lib-examples/usr/share/doc/staden-io-lib/test/data/ce\#*sorted.sam make[1]: Leaving directory '/«PKGBUILDDIR»' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress debian/rules override_dh_fixperms-indep make[1]: Entering directory '/«PKGBUILDDIR»' dh_fixperms chmod +x debian/staden-io-lib-examples/usr/share/doc/staden-io-lib/test/*.test debian/staden-io-lib-examples/usr/share/doc/staden-io-lib/test/*.pl make[1]: Leaving directory '/«PKGBUILDDIR»' dh_fixperms -Nstaden-io-lib-examples dh_strip dh_strip debug symbol extraction: enabling -a due to Build-Debug-Symbols: yes in /CurrentlyBuilding dh_strip debug symbol extraction: all non-arch-all packages for this build platform amd64: staden-io-lib-utils libstaden-read-dev libstaden-read11 dh_strip debug symbol extraction: packages to act on: staden-io-lib-utils libstaden-read-dev libstaden-read11 dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 dpkg-gencontrol: warning: -is is deprecated; it is without effect dpkg-gencontrol: warning: -ip is deprecated; it is without effect dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe /usr/bin/pkg_create_dbgsym: deferring build of .ddeb to dh_gencontrol Using buildid for compat level >= 9 libstaden-read-dev has no unstripped objects, ignoring find: `/«PKGBUILDDIR»/debian/libstaden-read-dev-dbgsym': No such file or directory /usr/bin/pkg_create_dbgsym: nothing in /«PKGBUILDDIR»/debian/libstaden-read-dev-dbgsym and no dbgdepends, ignoring Using buildid for compat level >= 9 dpkg-gencontrol: warning: -is is deprecated; it is without effect dpkg-gencontrol: warning: -ip is deprecated; it is without effect dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe /usr/bin/pkg_create_dbgsym: deferring build of .ddeb to dh_gencontrol dh_makeshlibs dh_shlibdeps dh_installdeb dh_gencontrol dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: package libstaden-read-dev: unused substitution variable ${devlibs:Depends} dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: Depends field of package staden-io-lib-examples: unknown substitution variable ${shlibs:Depends} dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_gencontrol debug symbol wrapper: all non-arch-all packages for this build platform amd64: staden-io-lib-utils libstaden-read-dev libstaden-read11 dh_gencontrol debug symbol wrapper: packages to act on: staden-io-lib-utils libstaden-read-dev libstaden-read11 dh_gencontrol debug symbol wrapper: ignored packages: dh_gencontrol debug symbol wrapper: processing package staden-io-lib-utils (pkgdir debian/staden-io-lib-utils, ddeb package dir debian/staden-io-lib-utils-dbgsym) dh_gencontrol debug symbol wrapper: building staden-io-lib-utils-dbgsym_1.14.6-2_amd64.ddeb dpkg-deb: building package 'staden-io-lib-utils-dbgsym' in '../staden-io-lib-utils-dbgsym_1.14.6-2_amd64.ddeb'. dh_gencontrol debug symbol wrapper: dpkg-distaddfile staden-io-lib-utils-dbgsym_1.14.6-2_amd64.ddeb science extra dpkg-distaddfile: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_gencontrol debug symbol wrapper: no debian/libstaden-read-dev-dbgsym, skipping package libstaden-read-dev dh_gencontrol debug symbol wrapper: processing package libstaden-read11 (pkgdir debian/libstaden-read11, ddeb package dir debian/libstaden-read11-dbgsym) dh_gencontrol debug symbol wrapper: building libstaden-read11-dbgsym_1.14.6-2_amd64.ddeb dpkg-deb: building package 'libstaden-read11-dbgsym' in '../libstaden-read11-dbgsym_1.14.6-2_amd64.ddeb'. dh_gencontrol debug symbol wrapper: dpkg-distaddfile libstaden-read11-dbgsym_1.14.6-2_amd64.ddeb libs extra dpkg-distaddfile: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_md5sums dh_builddeb INFO: pkgstriptranslations version 122 pkgstriptranslations: processing staden-io-lib-utils (in debian/staden-io-lib-utils); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/staden-io-lib-utils/DEBIAN/control, package staden-io-lib-utils, directory debian/staden-io-lib-utils .. removing usr/share/doc/staden-io-lib-utils/CHANGES.gz Searching for duplicated docs in dependency libstaden-read11... symlinking changelog.Debian.gz in staden-io-lib-utils to file in libstaden-read11 pkgstripfiles: PNG optimization for package staden-io-lib-utils took 1 s dpkg-deb: building package 'staden-io-lib-utils' in '../staden-io-lib-utils_1.14.6-2_amd64.deb'. INFO: pkgstriptranslations version 122 pkgstriptranslations: processing libstaden-read-dev (in debian/libstaden-read-dev); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libstaden-read-dev/DEBIAN/control, package libstaden-read-dev, directory debian/libstaden-read-dev Searching for duplicated docs in dependency libstaden-read11... symlinking changelog.Debian.gz in libstaden-read-dev to file in libstaden-read11 pkgstripfiles: PNG optimization for package libstaden-read-dev took 0 s dpkg-deb: building package 'libstaden-read-dev' in '../libstaden-read-dev_1.14.6-2_amd64.deb'. INFO: pkgstriptranslations version 122 pkgstriptranslations: processing libstaden-read11 (in debian/libstaden-read11); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libstaden-read11/DEBIAN/control, package libstaden-read11, directory debian/libstaden-read11 pkgstripfiles: Truncating usr/share/doc/libstaden-read11/changelog.Debian.gz to topmost ten records pkgstripfiles: PNG optimization for package libstaden-read11 took 0 s dpkg-deb: building package 'libstaden-read11' in '../libstaden-read11_1.14.6-2_amd64.deb'. INFO: pkgstriptranslations version 122 pkgstriptranslations: processing staden-io-lib-examples (in debian/staden-io-lib-examples); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/staden-io-lib-examples/DEBIAN/control, package staden-io-lib-examples, directory debian/staden-io-lib-examples pkgstripfiles: Truncating usr/share/doc/staden-io-lib-examples/changelog.Debian.gz to topmost ten records pkgstripfiles: PNG optimization for package staden-io-lib-examples took 0 s dpkg-deb: building package 'staden-io-lib-examples' in '../staden-io-lib-examples_1.14.6-2_all.deb'. dpkg-genchanges -b -mLaunchpad Build Daemon >../staden-io-lib_1.14.6-2_amd64.changes dpkg-genchanges: binary-only upload (no source code included) dpkg-source --after-build staden-io-lib-1.14.6 dpkg-buildpackage: binary-only upload (no source included) ──────────────────────────────────────────────────────────────────────────────── Build finished at 20151124-2329 Finished ──────── I: Built successfully ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build Chroot │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Changes │ └──────────────────────────────────────────────────────────────────────────────┘ staden-io-lib_1.14.6-2_amd64.changes: ───────────────────────────────────── Format: 1.8 Date: Tue, 24 Nov 2015 20:15:14 +0100 Source: staden-io-lib Binary: staden-io-lib-utils libstaden-read-dev libstaden-read11 staden-io-lib-examples Architecture: amd64 all Version: 1.14.6-2 Distribution: xenial-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: libstaden-read-dev - development files for libstaden-read libstaden-read11 - Staden library for reading and writing DNA sequencing results staden-io-lib-examples - programs for maniuplating DNA sequencing files (usage examples) staden-io-lib-utils - programs for maniuplating DNA sequencing files Closes: 806112 Changes: staden-io-lib (1.14.6-2) unstable; urgency=medium . * Enable separate building of arch independet packages Closes: #806112 * Adapt to latest d-shlibs Checksums-Sha1: 1f7e236e372a161ba08aa7aa1f143a26a1f1e419 264492 libstaden-read-dev_1.14.6-2_amd64.deb 581fa64feada99e7d5c65c977123361d51eb54fb 352232 libstaden-read11-dbgsym_1.14.6-2_amd64.ddeb d62d37d1a82fc92d12285cc728d409e5de68515d 192122 libstaden-read11_1.14.6-2_amd64.deb 1865bc936044d48bcc43f6f84450202abab6cc1b 1210264 staden-io-lib-examples_1.14.6-2_all.deb 0f130426e6d4b86bce14d567ce5c37706db0a347 202066 staden-io-lib-utils-dbgsym_1.14.6-2_amd64.ddeb ffb0f0ba3b6164bfd83e55022d6cbe1d17d163ad 124026 staden-io-lib-utils_1.14.6-2_amd64.deb Checksums-Sha256: 2c061e9990931a7f67d70b8c4796abdd5952c78662484e4ff752aec59f8851bc 264492 libstaden-read-dev_1.14.6-2_amd64.deb 22e6acd4869d9cde3828e105d9c92d1a0e4562ec5e89e948f17aa6090a4db2d4 352232 libstaden-read11-dbgsym_1.14.6-2_amd64.ddeb 4234d147e1166c8dc18e3d64162e62b383460dad5c0a0d1149a91cd9934cad37 192122 libstaden-read11_1.14.6-2_amd64.deb e5edde67faccb8071da6fd14f7a80cdcfeb3feb4f1ce6e2577b9c9b800f32003 1210264 staden-io-lib-examples_1.14.6-2_all.deb 9173cc0b709572048f45793d7e2cce021be5873b7d716ef6a3a45e51f5ddd2e4 202066 staden-io-lib-utils-dbgsym_1.14.6-2_amd64.ddeb ecd065c9795934596857817b4aa1f9239bf1df3e03e699b1259b59d59e3335dd 124026 staden-io-lib-utils_1.14.6-2_amd64.deb Files: 1f79ebed0cb8212d2a41d4f8d76c706b 264492 libdevel optional libstaden-read-dev_1.14.6-2_amd64.deb 62cea97eeaa3b0bc44afc28f52c50bee 352232 libs extra libstaden-read11-dbgsym_1.14.6-2_amd64.ddeb 1bf47cc03293a53a174c9175fc5e8119 192122 libs optional libstaden-read11_1.14.6-2_amd64.deb 4bb11f6796f59d6feefd69645adc6fe0 1210264 science optional staden-io-lib-examples_1.14.6-2_all.deb 0c65247da075b58bb257ab01ba9e32e3 202066 science extra staden-io-lib-utils-dbgsym_1.14.6-2_amd64.ddeb 2b9d434518fe61f213220c4287c20067 124026 science optional staden-io-lib-utils_1.14.6-2_amd64.deb ┌──────────────────────────────────────────────────────────────────────────────┐ │ Package contents │ └──────────────────────────────────────────────────────────────────────────────┘ libstaden-read-dev_1.14.6-2_amd64.deb ───────────────────────────────────── new debian package, version 2.0. size 264492 bytes: control archive=2360 bytes. 816 bytes, 19 lines control 3819 bytes, 59 lines md5sums Package: libstaden-read-dev Source: staden-io-lib Version: 1.14.6-2 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1172 Depends: libstaden-read11 (= 1.14.6-2) Section: libdevel Priority: optional Homepage: http://staden.sourceforge.net/ Description: development files for libstaden-read This package contains the header and development files needed to build programs and packages using the Staden io_lib. . The io_lib from the Staden package is a library of file reading and writing code to provide a general purpose trace file (and Experiment File) reading interface. It has been compiled and tested on a variety of unix systems, MacOS X and MS Windows. drwxr-xr-x root/root 0 2015-11-24 23:28 ./ drwxr-xr-x root/root 0 2015-11-24 23:28 ./usr/ drwxr-xr-x root/root 0 2015-11-24 23:28 ./usr/bin/ -rwxr-xr-x root/root 911 2015-11-24 23:28 ./usr/bin/io_lib-config drwxr-xr-x root/root 0 2015-11-24 23:28 ./usr/include/ drwxr-xr-x root/root 0 2015-11-24 23:28 ./usr/include/io_lib/ -rw-r--r-- root/root 10263 2015-11-24 23:28 ./usr/include/io_lib/Read.h -rw-r--r-- root/root 2471 2015-11-24 23:28 ./usr/include/io_lib/abi.h -rw-r--r-- root/root 2480 2015-11-24 23:28 ./usr/include/io_lib/alf.h -rw-r--r-- root/root 3536 2015-11-24 23:28 ./usr/include/io_lib/array.h -rw-r--r-- root/root 24247 2015-11-24 23:28 ./usr/include/io_lib/bam.h -rw-r--r-- root/root 2075 2015-11-24 23:28 ./usr/include/io_lib/binning.h -rw-r--r-- root/root 6268 2015-11-24 23:28 ./usr/include/io_lib/compress.h -rw-r--r-- root/root 15348 2015-11-24 23:28 ./usr/include/io_lib/compression.h 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4238 2015-11-24 23:28 ./usr/include/io_lib/scf_extras.h -rw-r--r-- root/root 7403 2015-11-24 23:28 ./usr/include/io_lib/scram.h -rw-r--r-- root/root 8453 2015-11-24 23:28 ./usr/include/io_lib/seqIOABI.h -rw-r--r-- root/root 3793 2015-11-24 23:28 ./usr/include/io_lib/sff.h -rw-r--r-- root/root 7141 2015-11-24 23:28 ./usr/include/io_lib/srf.h -rw-r--r-- root/root 3350 2015-11-24 23:28 ./usr/include/io_lib/stdio_hack.h -rw-r--r-- root/root 2423 2015-11-24 23:28 ./usr/include/io_lib/string_alloc.h -rw-r--r-- root/root 3253 2015-11-24 23:28 ./usr/include/io_lib/tar_format.h -rw-r--r-- root/root 6759 2015-11-24 23:28 ./usr/include/io_lib/thread_pool.h -rw-r--r-- root/root 5383 2015-11-24 23:28 ./usr/include/io_lib/traceType.h -rw-r--r-- root/root 7365 2015-11-24 23:28 ./usr/include/io_lib/translate.h -rw-r--r-- root/root 3578 2015-11-24 23:28 ./usr/include/io_lib/vlen.h -rw-r--r-- root/root 2562 2015-11-24 23:28 ./usr/include/io_lib/xalloc.h -rw-r--r-- root/root 2118 2015-11-24 23:28 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610 2015-11-24 23:28 ./usr/share/man/man3/read_scf.3.gz lrwxrwxrwx root/root 0 2015-11-24 23:28 ./usr/share/man/man3/read_scf_header.3.gz -> read_scf.3.gz -rw-r--r-- root/root 783 2015-11-24 23:28 ./usr/share/man/man3/scf2read.3.gz -rw-r--r-- root/root 804 2015-11-24 23:28 ./usr/share/man/man3/write_reading.3.gz -rw-r--r-- root/root 608 2015-11-24 23:28 ./usr/share/man/man3/write_scf.3.gz lrwxrwxrwx root/root 0 2015-11-24 23:28 ./usr/share/man/man3/write_scf_header.3.gz -> write_scf.3.gz drwxr-xr-x root/root 0 2015-11-24 23:28 ./usr/share/man/man4/ lrwxrwxrwx root/root 0 2015-11-24 23:28 ./usr/share/man/man4/Read.4.gz -> ../man3/read_reading.3.gz libstaden-read11_1.14.6-2_amd64.deb ─────────────────────────────────── new debian package, version 2.0. size 192122 bytes: control archive=1026 bytes. 1000 bytes, 21 lines control 244 bytes, 3 lines md5sums 35 bytes, 1 lines shlibs 60 bytes, 2 lines triggers Package: libstaden-read11 Source: staden-io-lib Version: 1.14.6-2 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 484 Depends: libc6 (>= 2.15), libcurl3-gnutls (>= 7.16.2), zlib1g (>= 1:1.2.0.2) Section: libs Priority: optional Multi-Arch: same Homepage: http://staden.sourceforge.net/ Description: Staden library for reading and writing DNA sequencing results This package contains the Staden io_lib, that is renamed in Debian and Fedora ‘staden-read’ instead of ‘read’. This library supports various DNA sequence read formats, in particular SCF, ABI, ALF, CTF, ZTR, SFF and SRF. . The io_lib from the Staden package is a library of file reading and writing code to provide a general purpose trace file (and Experiment File) reading interface. It has been compiled and tested on a variety of unix systems, MacOS X and MS Windows. drwxr-xr-x root/root 0 2015-11-24 23:28 ./ drwxr-xr-x root/root 0 2015-11-24 23:28 ./usr/ drwxr-xr-x root/root 0 2015-11-24 23:28 ./usr/lib/ drwxr-xr-x root/root 0 2015-11-24 23:28 ./usr/lib/x86_64-linux-gnu/ lrwxrwxrwx root/root 0 2015-11-24 23:28 ./usr/lib/x86_64-linux-gnu/libstaden-read.so.11 -> libstaden-read.so.11.0.5 -rw-r--r-- root/root 472848 2015-11-24 23:28 ./usr/lib/x86_64-linux-gnu/libstaden-read.so.11.0.5 drwxr-xr-x root/root 0 2015-11-24 23:28 ./usr/share/ drwxr-xr-x root/root 0 2015-11-24 23:28 ./usr/share/doc/ drwxr-xr-x root/root 0 2015-11-24 23:28 ./usr/share/doc/libstaden-read11/ -rw-r--r-- root/root 1061 2015-11-24 23:29 ./usr/share/doc/libstaden-read11/changelog.Debian.gz -rw-r--r-- root/root 7236 2015-08-07 14:02 ./usr/share/doc/libstaden-read11/copyright staden-io-lib-examples_1.14.6-2_all.deb ─────────────────────────────────────── new debian package, version 2.0. size 1210264 bytes: control archive=3323 bytes. 1057 bytes, 23 lines control 7734 bytes, 87 lines md5sums Package: staden-io-lib-examples Source: staden-io-lib Version: 1.14.6-2 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1314 Recommends: staden-io-lib-utils Section: science Priority: optional Homepage: http://staden.sourceforge.net/ Description: programs for maniuplating DNA sequencing files (usage examples) The io_lib from the Staden package is a library of file reading and writing code to provide a general purpose trace file (and Experiment File) reading interface. It has been compiled and tested on a variety of unix systems, MacOS X and MS Windows. . This package contains the programs that are distributed with the Staden io_lib for manipulating and converting sequencing data files, and in particular files to maniuplate short reads generated by second and third generation sequencers and stored in SRF format. . This package contains example data and a test suite to test the data. drwxr-xr-x root/root 0 2015-11-24 23:28 ./ drwxr-xr-x root/root 0 2015-11-24 23:28 ./usr/ drwxr-xr-x root/root 0 2015-11-24 23:28 ./usr/share/ drwxr-xr-x root/root 0 2015-11-24 23:28 ./usr/share/doc/ drwxr-xr-x root/root 0 2015-11-24 23:28 ./usr/share/doc/staden-io-lib-examples/ -rw-r--r-- root/root 1060 2015-11-24 23:29 ./usr/share/doc/staden-io-lib-examples/changelog.Debian.gz -rw-r--r-- root/root 7236 2015-08-07 14:02 ./usr/share/doc/staden-io-lib-examples/copyright drwxr-xr-x root/root 0 2015-11-24 23:28 ./usr/share/doc/staden-io-lib/ drwxr-xr-x root/root 0 2015-11-24 23:28 ./usr/share/doc/staden-io-lib/test/ -rwxr-xr-x root/root 3119 2015-11-06 17:11 ./usr/share/doc/staden-io-lib/test/compare_sam.pl -rwxr-xr-x root/root 70 2015-11-24 23:28 ./usr/share/doc/staden-io-lib/test/cram_io.test drwxr-xr-x root/root 0 2015-11-24 23:28 ./usr/share/doc/staden-io-lib/test/data/ -rw-r--r-- root/root 95 2014-07-29 13:14 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12:28 ./usr/share/doc/staden-io-lib/test/data/xx#triplet.sam -rw-r--r-- root/root 0 2014-09-30 14:31 ./usr/share/doc/staden-io-lib/test/data/xx#triplet.sam.being_fixed.2278209445148847528.bam -rw-r--r-- root/root 320 2015-02-24 12:28 ./usr/share/doc/staden-io-lib/test/data/xx#unsorted.sam -rw-r--r-- root/root 61 2015-01-16 09:54 ./usr/share/doc/staden-io-lib/test/data/xx.fa -rw-r--r-- root/root 29 2015-01-28 17:40 ./usr/share/doc/staden-io-lib/test/data/xx.fa.fai -rwxr-xr-x root/root 2350 2014-06-30 06:12 ./usr/share/doc/staden-io-lib/test/generate_data.pl -rwxr-xr-x root/root 691 2015-11-24 23:28 ./usr/share/doc/staden-io-lib/test/java.test -rwxr-xr-x root/root 3428 2015-11-24 23:28 ./usr/share/doc/staden-io-lib/test/scram.test -rwxr-xr-x root/root 48 2015-11-24 23:28 ./usr/share/doc/staden-io-lib/test/scram_mt.test -rwxr-xr-x root/root 56 2015-11-24 23:28 ./usr/share/doc/staden-io-lib/test/scram_v3.test -rwxr-xr-x root/root 769 2015-11-24 23:28 ./usr/share/doc/staden-io-lib/test/srf2fasta.test -rwxr-xr-x root/root 721 2015-11-24 23:28 ./usr/share/doc/staden-io-lib/test/srf2fastq.test -rwxr-xr-x root/root 692 2015-11-24 23:28 ./usr/share/doc/staden-io-lib/test/srf_filter.test -rwxr-xr-x root/root 941 2015-11-24 23:28 ./usr/share/doc/staden-io-lib/test/srf_index.test -rwxr-xr-x root/root 464 2015-11-24 23:28 ./usr/share/doc/staden-io-lib/test/srf_info.test staden-io-lib-utils_1.14.6-2_amd64.deb ────────────────────────────────────── new debian package, version 2.0. size 124026 bytes: control archive=2158 bytes. 1008 bytes, 22 lines control 2902 bytes, 49 lines md5sums Package: staden-io-lib-utils Source: staden-io-lib Version: 1.14.6-2 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 562 Depends: libc6 (>= 2.14), libstaden-read11 Suggests: staden-io-lib-examples Section: science Priority: optional Homepage: http://staden.sourceforge.net/ Description: programs for maniuplating DNA sequencing files The io_lib from the Staden package is a library of file reading and writing code to provide a general purpose trace file (and Experiment File) reading interface. It has been compiled and tested on a variety of unix systems, MacOS X and MS Windows. . This package contains the programs that are distributed with the Staden io_lib for manipulating and converting sequencing data files, and in particular files to maniuplate short reads generated by second and third generation sequencers and stored in SRF format. drwxr-xr-x root/root 0 2015-11-24 23:28 ./ drwxr-xr-x root/root 0 2015-11-24 23:28 ./usr/ drwxr-xr-x root/root 0 2015-11-24 23:28 ./usr/bin/ -rwxr-xr-x root/root 10528 2015-11-24 23:28 ./usr/bin/append_sff -rwxr-xr-x root/root 19064 2015-11-24 23:28 ./usr/bin/convert_trace -rwxr-xr-x root/root 22992 2015-11-24 23:28 ./usr/bin/cram_dump -rwxr-xr-x root/root 6360 2015-11-24 23:28 ./usr/bin/cram_index -rwxr-xr-x root/root 10600 2015-11-24 23:28 ./usr/bin/cram_size -rwxr-xr-x root/root 10576 2015-11-24 23:28 ./usr/bin/extract_fastq -rwxr-xr-x root/root 14720 2015-11-24 23:28 ./usr/bin/extract_qual -rwxr-xr-x root/root 10608 2015-11-24 23:28 ./usr/bin/extract_seq -rwxr-xr-x root/root 10488 2015-11-24 23:28 ./usr/bin/get_comment 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2015-11-24 23:28 ./usr/bin/srf2fasta -rwxr-xr-x root/root 18880 2015-11-24 23:28 ./usr/bin/srf2fastq -rwxr-xr-x root/root 27112 2015-11-24 23:28 ./usr/bin/srf_dump_all -rwxr-xr-x root/root 10560 2015-11-24 23:28 ./usr/bin/srf_extract_hash -rwxr-xr-x root/root 10568 2015-11-24 23:28 ./usr/bin/srf_extract_linear -rwxr-xr-x root/root 27312 2015-11-24 23:28 ./usr/bin/srf_filter -rwxr-xr-x root/root 10584 2015-11-24 23:28 ./usr/bin/srf_index_hash -rwxr-xr-x root/root 19056 2015-11-24 23:28 ./usr/bin/srf_info -rwxr-xr-x root/root 10488 2015-11-24 23:28 ./usr/bin/srf_list -rwxr-xr-x root/root 10456 2015-11-24 23:28 ./usr/bin/trace_dump -rwxr-xr-x root/root 14720 2015-11-24 23:28 ./usr/bin/ztr_dump drwxr-xr-x root/root 0 2015-11-24 23:28 ./usr/share/ drwxr-xr-x root/root 0 2015-11-24 23:28 ./usr/share/doc-base/ -rw-r--r-- root/root 304 2013-09-12 08:58 ./usr/share/doc-base/staden-io-lib-hash-file-format -rw-r--r-- root/root 349 2013-09-12 08:58 ./usr/share/doc-base/staden-io-lib-ztr-format drwxr-xr-x root/root 0 2015-11-24 23:28 ./usr/share/doc/ drwxr-xr-x root/root 0 2015-11-24 23:28 ./usr/share/doc/staden-io-lib-utils/ -rw-r--r-- root/root 3266 2014-06-30 06:12 ./usr/share/doc/staden-io-lib-utils/Hash_File_Format -rw-r--r-- root/root 2667 2015-11-06 16:39 ./usr/share/doc/staden-io-lib-utils/README.gz -rw-r--r-- root/root 20980 2014-06-30 06:12 ./usr/share/doc/staden-io-lib-utils/ZTR_format.gz lrwxrwxrwx root/root 0 2015-11-24 23:28 ./usr/share/doc/staden-io-lib-utils/changelog.Debian.gz -> ../libstaden-read11/changelog.Debian.gz -rw-r--r-- root/root 7236 2015-08-07 14:02 ./usr/share/doc/staden-io-lib-utils/copyright drwxr-xr-x root/root 0 2015-11-24 23:28 ./usr/share/man/ drwxr-xr-x root/root 0 2015-11-24 23:28 ./usr/share/man/man1/ -rw-r--r-- root/root 2007 2015-11-24 23:28 ./usr/share/man/man1/scramble.1.gz -rw-r--r-- root/root 358 2015-11-24 23:28 ./usr/share/man/man1/srf2fasta.1.gz -rw-r--r-- root/root 1321 2015-11-24 23:28 ./usr/share/man/man1/srf2fastq.1.gz -rw-r--r-- root/root 836 2015-11-24 23:28 ./usr/share/man/man1/srf_dump_all.1.gz -rw-r--r-- root/root 859 2015-11-24 23:28 ./usr/share/man/man1/srf_filter.1.gz -rw-r--r-- root/root 572 2015-11-24 23:28 ./usr/share/man/man1/srf_index_hash.1.gz -rw-r--r-- root/root 748 2015-11-24 23:28 ./usr/share/man/man1/srf_info.1.gz -rw-r--r-- root/root 804 2015-11-24 23:28 ./usr/share/man/man1/srf_list.1.gz ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Not removing build depends: as requested Keeping session: ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Build Architecture: amd64 Build-Space: 568232 Build-Time: 431 Distribution: xenial-proposed Host Architecture: amd64 Install-Time: 13 Job: staden-io-lib_1.14.6-2.dsc Machine Architecture: amd64 Package: staden-io-lib Package-Time: 444 Source-Version: 1.14.6-2 Space: 568232 Status: successful Version: 1.14.6-2 ──────────────────────────────────────────────────────────────────────────────── Finished at 20151124-2329 Build needed 00:07:24, 568232k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-8339895'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-8339895/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-8339895'] Unmounting chroot for build PACKAGEBUILD-8339895... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-8339895'] Removing build PACKAGEBUILD-8339895