RUN: /bin/echo ['echo', 'Forking build subprocess...'] Forking build subprocess... RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', '3905ee707401e2eb7c7ef73fe1321fa6d724f963', '/home/buildd/filecache-default/1072168715032372000a2363264a1d6c9c33a9f2'] Synching the system clock with the buildd NTP service... 3 Dec 15:37:10 ntpdate[1472]: adjust time server 10.211.37.1 offset -0.000010 sec Unpacking chroot for build 3905ee707401e2eb7c7ef73fe1321fa6d724f963 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', '3905ee707401e2eb7c7ef73fe1321fa6d724f963'] Mounting chroot for build 3905ee707401e2eb7c7ef73fe1321fa6d724f963 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', '3905ee707401e2eb7c7ef73fe1321fa6d724f963', 'deb http://ftpmaster.internal/ubuntu precise main universe'] Overriding sources.list in build-3905ee707401e2eb7c7ef73fe1321fa6d724f963 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', '3905ee707401e2eb7c7ef73fe1321fa6d724f963', 'amd64'] Updating debian chroot for build 3905ee707401e2eb7c7ef73fe1321fa6d724f963 Ign http://ftpmaster.internal precise InRelease Get:1 http://ftpmaster.internal precise Release.gpg [198 B] Get:2 http://ftpmaster.internal precise Release [49.6 kB] Get:3 http://ftpmaster.internal precise/main amd64 Packages [1287 kB] Get:4 http://ftpmaster.internal precise/universe amd64 Packages [4678 kB] Get:5 http://ftpmaster.internal precise/main i386 Packages [1288 kB] Get:6 http://ftpmaster.internal precise/universe i386 Packages [4689 kB] Get:7 http://ftpmaster.internal precise/main TranslationIndex [3502 B] Get:8 http://ftpmaster.internal precise/universe TranslationIndex [2712 B] Get:9 http://ftpmaster.internal precise/main Translation-en [713 kB] Get:10 http://ftpmaster.internal precise/universe Translation-en [3300 kB] Fetched 16.0 MB in 4s (3233 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: libasn1-8-heimdal libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libkrb5-26-heimdal libroken18-heimdal libsqlite3-0 libwind0-heimdal The following packages will be upgraded: base-files bash binutils coreutils cpp-4.6 debconf dpkg dpkg-dev g++-4.6 gcc-4.6 gcc-4.6-base gnupg gpgv initramfs-tools initramfs-tools-bin initscripts klibc-utils libacl1 libalgorithm-diff-xs-perl libattr1 libc-bin libc-dev-bin libc6 libc6-dev libcurl3-gnutls libdb5.1 libdpkg-perl libgcc1 libgnutls26 libgomp1 libgssapi-krb5-2 libk5crypto3 libklibc libkrb5-3 libkrb5support0 libldap-2.4-2 libmpfr4 libncurses5 libncursesw5 libquadmath0 libreadline6 libsasl2-2 libselinux1 libstdc++6 libstdc++6-4.6-dev libtinfo5 libudev0 linux-libc-dev locales login lsb-base module-init-tools multiarch-support ncurses-base ncurses-bin passwd perl perl-base perl-modules pkg-create-dbgsym pkgbinarymangler procps python-minimal python2.7-minimal readline-common sysv-rc sysvinit-utils tar ubuntu-keyring udev 70 upgraded, 10 newly installed, 0 to remove and 0 not upgraded. Need to get 61.1 MB of archives. After this operation, 10.1 MB disk space will be freed. WARNING: The following packages cannot be authenticated! base-files bash libc-dev-bin libc6-dev libc-bin libc6 linux-libc-dev libgomp1 gcc-4.6-base libgcc1 cpp-4.6 libquadmath0 libstdc++6-4.6-dev g++-4.6 gcc-4.6 libstdc++6 libmpfr4 binutils libattr1 libacl1 dpkg coreutils login libncursesw5 libtinfo5 libncurses5 ncurses-bin perl libalgorithm-diff-xs-perl perl-base perl-modules libdb5.1 tar ncurses-base python2.7-minimal python-minimal readline-common libreadline6 debconf libselinux1 libsqlite3-0 libudev0 module-init-tools libgnutls26 libk5crypto3 libgssapi-krb5-2 libkrb5-3 libkrb5support0 libroken18-heimdal libasn1-8-heimdal libhcrypto4-heimdal libheimbase1-heimdal libwind0-heimdal libhx509-5-heimdal libkrb5-26-heimdal libheimntlm0-heimdal libgssapi3-heimdal libsasl2-2 libldap-2.4-2 libcurl3-gnutls gpgv gnupg ubuntu-keyring lsb-base multiarch-support passwd initramfs-tools initramfs-tools-bin klibc-utils libklibc sysvinit-utils sysv-rc initscripts procps udev locales dpkg-dev libdpkg-perl pkg-create-dbgsym pkgbinarymangler Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ precise/main base-files amd64 6.5ubuntu3 [67.0 kB] Get:2 http://ftpmaster.internal/ubuntu/ precise/main bash amd64 4.2-1ubuntu1 [641 kB] Get:3 http://ftpmaster.internal/ubuntu/ precise/main libc-dev-bin amd64 2.13-20ubuntu9 [84.0 kB] Get:4 http://ftpmaster.internal/ubuntu/ precise/main libc6-dev amd64 2.13-20ubuntu9 [2569 kB] Get:5 http://ftpmaster.internal/ubuntu/ precise/main libc-bin amd64 2.13-20ubuntu9 [991 kB] Get:6 http://ftpmaster.internal/ubuntu/ precise/main libc6 amd64 2.13-20ubuntu9 [4145 kB] Get:7 http://ftpmaster.internal/ubuntu/ precise/main linux-libc-dev amd64 3.2.0-3.7 [847 kB] Get:8 http://ftpmaster.internal/ubuntu/ precise/main libgomp1 amd64 4.6.2-5ubuntu1 [25.4 kB] Get:9 http://ftpmaster.internal/ubuntu/ precise/main gcc-4.6-base amd64 4.6.2-5ubuntu1 [15.3 kB] Get:10 http://ftpmaster.internal/ubuntu/ precise/main libgcc1 amd64 1:4.6.2-5ubuntu1 [42.6 kB] Get:11 http://ftpmaster.internal/ubuntu/ precise/main cpp-4.6 amd64 4.6.2-5ubuntu1 [4826 kB] Get:12 http://ftpmaster.internal/ubuntu/ precise/main libquadmath0 amd64 4.6.2-5ubuntu1 [126 kB] Get:13 http://ftpmaster.internal/ubuntu/ precise/main libstdc++6-4.6-dev amd64 4.6.2-5ubuntu1 [1645 kB] Get:14 http://ftpmaster.internal/ubuntu/ precise/main g++-4.6 amd64 4.6.2-5ubuntu1 [6969 kB] Get:15 http://ftpmaster.internal/ubuntu/ precise/main gcc-4.6 amd64 4.6.2-5ubuntu1 [7536 kB] Get:16 http://ftpmaster.internal/ubuntu/ precise/main libstdc++6 amd64 4.6.2-5ubuntu1 [320 kB] Get:17 http://ftpmaster.internal/ubuntu/ precise/main libmpfr4 amd64 3.1.0-3 [201 kB] Get:18 http://ftpmaster.internal/ubuntu/ precise/main binutils amd64 2.22-1ubuntu1 [2637 kB] Get:19 http://ftpmaster.internal/ubuntu/ precise/main libattr1 amd64 1:2.4.46-3ubuntu1 [10.9 kB] Get:20 http://ftpmaster.internal/ubuntu/ precise/main libacl1 amd64 2.2.51-4ubuntu1 [18.0 kB] Get:21 http://ftpmaster.internal/ubuntu/ precise/main dpkg amd64 1.16.1.2ubuntu3 [1829 kB] Get:22 http://ftpmaster.internal/ubuntu/ precise/main coreutils amd64 8.13-3ubuntu2 [2610 kB] Get:23 http://ftpmaster.internal/ubuntu/ precise/main login amd64 1:4.1.4.2+svn3283-3ubuntu3 [287 kB] Get:24 http://ftpmaster.internal/ubuntu/ precise/main libncursesw5 amd64 5.9-4 [137 kB] Get:25 http://ftpmaster.internal/ubuntu/ precise/main libtinfo5 amd64 5.9-4 [95.3 kB] Get:26 http://ftpmaster.internal/ubuntu/ precise/main libncurses5 amd64 5.9-4 [114 kB] Get:27 http://ftpmaster.internal/ubuntu/ precise/main ncurses-bin amd64 5.9-4 [151 kB] Get:28 http://ftpmaster.internal/ubuntu/ precise/main perl amd64 5.14.2-5ubuntu1 [4398 kB] Get:29 http://ftpmaster.internal/ubuntu/ precise/main libalgorithm-diff-xs-perl amd64 0.04-2build2 [12.4 kB] Get:30 http://ftpmaster.internal/ubuntu/ precise/main perl-base amd64 5.14.2-5ubuntu1 [1455 kB] Get:31 http://ftpmaster.internal/ubuntu/ precise/main perl-modules all 5.14.2-5ubuntu1 [3369 kB] Get:32 http://ftpmaster.internal/ubuntu/ precise/main libdb5.1 amd64 5.1.25-11build1 [700 kB] Get:33 http://ftpmaster.internal/ubuntu/ precise/main tar amd64 1.26-3ubuntu1 [219 kB] Get:34 http://ftpmaster.internal/ubuntu/ precise/main ncurses-base all 5.9-4 [21.0 kB] Get:35 http://ftpmaster.internal/ubuntu/ precise/main python2.7-minimal amd64 2.7.2-8build1 [1642 kB] Get:36 http://ftpmaster.internal/ubuntu/ precise/main python-minimal all 2.7.2-9ubuntu1 [29.7 kB] Get:37 http://ftpmaster.internal/ubuntu/ precise/main readline-common amd64 6.2-8 [49.9 kB] Get:38 http://ftpmaster.internal/ubuntu/ precise/main libreadline6 amd64 6.2-8 [139 kB] Get:39 http://ftpmaster.internal/ubuntu/ precise/main debconf amd64 1.5.41ubuntu1 [145 kB] Get:40 http://ftpmaster.internal/ubuntu/ precise/main libselinux1 amd64 2.1.0-4ubuntu1 [62.4 kB] Get:41 http://ftpmaster.internal/ubuntu/ precise/main libsqlite3-0 amd64 3.7.9-2ubuntu1 [348 kB] Get:42 http://ftpmaster.internal/ubuntu/ precise/main libudev0 amd64 175-0ubuntu2 [29.4 kB] Get:43 http://ftpmaster.internal/ubuntu/ precise/main module-init-tools amd64 3.16-1ubuntu2 [105 kB] Get:44 http://ftpmaster.internal/ubuntu/ precise/main libgnutls26 amd64 2.12.14-3 [459 kB] Get:45 http://ftpmaster.internal/ubuntu/ precise/main libk5crypto3 amd64 1.9.1+dfsg-3ubuntu1 [81.8 kB] Get:46 http://ftpmaster.internal/ubuntu/ precise/main libgssapi-krb5-2 amd64 1.9.1+dfsg-3ubuntu1 [118 kB] Get:47 http://ftpmaster.internal/ubuntu/ precise/main libkrb5-3 amd64 1.9.1+dfsg-3ubuntu1 [348 kB] Get:48 http://ftpmaster.internal/ubuntu/ precise/main libkrb5support0 amd64 1.9.1+dfsg-3ubuntu1 [23.8 kB] Get:49 http://ftpmaster.internal/ubuntu/ precise/main libroken18-heimdal amd64 1.5.dfsg.1-3 [44.8 kB] Get:50 http://ftpmaster.internal/ubuntu/ precise/main libasn1-8-heimdal amd64 1.5.dfsg.1-3 [207 kB] Get:51 http://ftpmaster.internal/ubuntu/ precise/main libhcrypto4-heimdal amd64 1.5.dfsg.1-3 [101 kB] Get:52 http://ftpmaster.internal/ubuntu/ precise/main libheimbase1-heimdal amd64 1.5.dfsg.1-3 [12.0 kB] Get:53 http://ftpmaster.internal/ubuntu/ precise/main libwind0-heimdal amd64 1.5.dfsg.1-3 [77.5 kB] Get:54 http://ftpmaster.internal/ubuntu/ precise/main libhx509-5-heimdal amd64 1.5.dfsg.1-3 [124 kB] Get:55 http://ftpmaster.internal/ubuntu/ precise/main libkrb5-26-heimdal amd64 1.5.dfsg.1-3 [218 kB] Get:56 http://ftpmaster.internal/ubuntu/ precise/main libheimntlm0-heimdal amd64 1.5.dfsg.1-3 [15.8 kB] Get:57 http://ftpmaster.internal/ubuntu/ precise/main libgssapi3-heimdal amd64 1.5.dfsg.1-3 [107 kB] Get:58 http://ftpmaster.internal/ubuntu/ precise/main libsasl2-2 amd64 2.1.24~rc1.dfsg1+cvs2011-05-23-4ubuntu3 [70.3 kB] Get:59 http://ftpmaster.internal/ubuntu/ precise/main libldap-2.4-2 amd64 2.4.25-4ubuntu1 [184 kB] Get:60 http://ftpmaster.internal/ubuntu/ precise/main libcurl3-gnutls amd64 7.22.0-3ubuntu1 [227 kB] Get:61 http://ftpmaster.internal/ubuntu/ precise/main gpgv amd64 1.4.11-3ubuntu2 [185 kB] Get:62 http://ftpmaster.internal/ubuntu/ precise/main gnupg amd64 1.4.11-3ubuntu2 [808 kB] Get:63 http://ftpmaster.internal/ubuntu/ precise/main ubuntu-keyring amd64 2011.11.21 [11.4 kB] Get:64 http://ftpmaster.internal/ubuntu/ precise/main lsb-base all 4.0-0ubuntu17 [10.5 kB] Get:65 http://ftpmaster.internal/ubuntu/ precise/main multiarch-support amd64 2.13-20ubuntu9 [4478 B] Get:66 http://ftpmaster.internal/ubuntu/ precise/main passwd amd64 1:4.1.4.2+svn3283-3ubuntu3 [950 kB] Get:67 http://ftpmaster.internal/ubuntu/ precise/main initramfs-tools amd64 0.99ubuntu9 [48.6 kB] Get:68 http://ftpmaster.internal/ubuntu/ precise/main initramfs-tools-bin amd64 0.99ubuntu9 [11.9 kB] Get:69 http://ftpmaster.internal/ubuntu/ precise/main klibc-utils amd64 1.5.25-1ubuntu1 [181 kB] Get:70 http://ftpmaster.internal/ubuntu/ precise/main libklibc amd64 1.5.25-1ubuntu1 [45.7 kB] Get:71 http://ftpmaster.internal/ubuntu/ precise/main sysvinit-utils amd64 2.88dsf-13.10ubuntu5 [62.5 kB] Get:72 http://ftpmaster.internal/ubuntu/ precise/main sysv-rc all 2.88dsf-13.10ubuntu5 [44.5 kB] Get:73 http://ftpmaster.internal/ubuntu/ precise/main initscripts amd64 2.88dsf-13.10ubuntu5 [27.2 kB] Get:74 http://ftpmaster.internal/ubuntu/ precise/main procps amd64 1:3.2.8-11ubuntu4 [235 kB] Get:75 http://ftpmaster.internal/ubuntu/ precise/main udev amd64 175-0ubuntu2 [323 kB] Get:76 http://ftpmaster.internal/ubuntu/ precise/main locales all 2.13+git20111116-1 [3349 kB] Get:77 http://ftpmaster.internal/ubuntu/ precise/main dpkg-dev amd64 1.16.1.2ubuntu3 [468 kB] Get:78 http://ftpmaster.internal/ubuntu/ precise/main libdpkg-perl amd64 1.16.1.2ubuntu3 [181 kB] Get:79 http://ftpmaster.internal/ubuntu/ precise/main pkg-create-dbgsym all 0.50 [8334 B] Get:80 http://ftpmaster.internal/ubuntu/ precise/main pkgbinarymangler all 109 [28.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 61.1 MB in 1s (37.1 MB/s) (Reading database ... 14111 files and directories currently installed.) Preparing to replace base-files 6.5ubuntu2 (using .../base-files_6.5ubuntu3_amd64.deb) ... Unpacking replacement base-files ... Setting up base-files (6.5ubuntu3) ... (Reading database ... 14111 files and directories currently installed.) Preparing to replace bash 4.2-0ubuntu4 (using .../bash_4.2-1ubuntu1_amd64.deb) ... Unpacking replacement bash ... Setting up bash (4.2-1ubuntu1) ... Installing new version of config file /etc/skel/.bashrc ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode. (Reading database ... 14112 files and directories currently installed.) Preparing to replace libc-dev-bin 2.13-20ubuntu5 (using .../libc-dev-bin_2.13-20ubuntu9_amd64.deb) ... Unpacking replacement libc-dev-bin ... Preparing to replace libc6-dev 2.13-20ubuntu5 (using .../libc6-dev_2.13-20ubuntu9_amd64.deb) ... Unpacking replacement libc6-dev ... Preparing to replace libc-bin 2.13-20ubuntu5 (using .../libc-bin_2.13-20ubuntu9_amd64.deb) ... Unpacking replacement libc-bin ... Setting up libc-bin (2.13-20ubuntu9) ... (Reading database ... 14112 files and directories currently installed.) Preparing to replace libc6 2.13-20ubuntu5 (using .../libc6_2.13-20ubuntu9_amd64.deb) ... Unpacking replacement libc6 ... Setting up libc6 (2.13-20ubuntu9) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14112 files and directories currently installed.) Preparing to replace linux-libc-dev 3.1.0-2.3 (using .../linux-libc-dev_3.2.0-3.7_amd64.deb) ... Unpacking replacement linux-libc-dev ... Preparing to replace libgomp1 4.6.2-2ubuntu1 (using .../libgomp1_4.6.2-5ubuntu1_amd64.deb) ... Unpacking replacement libgomp1 ... Preparing to replace gcc-4.6-base 4.6.2-2ubuntu1 (using .../gcc-4.6-base_4.6.2-5ubuntu1_amd64.deb) ... Unpacking replacement gcc-4.6-base ... Setting up gcc-4.6-base (4.6.2-5ubuntu1) ... (Reading database ... 14113 files and directories currently installed.) Preparing to replace libgcc1 1:4.6.2-2ubuntu1 (using .../libgcc1_1%3a4.6.2-5ubuntu1_amd64.deb) ... Unpacking replacement libgcc1 ... Setting up libgcc1 (1:4.6.2-5ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14113 files and directories currently installed.) Preparing to replace cpp-4.6 4.6.2-2ubuntu1 (using .../cpp-4.6_4.6.2-5ubuntu1_amd64.deb) ... Unpacking replacement cpp-4.6 ... Preparing to replace libquadmath0 4.6.2-2ubuntu1 (using .../libquadmath0_4.6.2-5ubuntu1_amd64.deb) ... Unpacking replacement libquadmath0 ... Preparing to replace libstdc++6-4.6-dev 4.6.2-2ubuntu1 (using .../libstdc++6-4.6-dev_4.6.2-5ubuntu1_amd64.deb) ... Unpacking replacement libstdc++6-4.6-dev ... Preparing to replace g++-4.6 4.6.2-2ubuntu1 (using .../g++-4.6_4.6.2-5ubuntu1_amd64.deb) ... Unpacking replacement g++-4.6 ... Preparing to replace gcc-4.6 4.6.2-2ubuntu1 (using .../gcc-4.6_4.6.2-5ubuntu1_amd64.deb) ... Unpacking replacement gcc-4.6 ... Preparing to replace libstdc++6 4.6.2-2ubuntu1 (using .../libstdc++6_4.6.2-5ubuntu1_amd64.deb) ... Unpacking replacement libstdc++6 ... Setting up libstdc++6 (4.6.2-5ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14113 files and directories currently installed.) Preparing to replace libmpfr4 3.1.0-2 (using .../libmpfr4_3.1.0-3_amd64.deb) ... Unpacking replacement libmpfr4 ... Preparing to replace binutils 2.21.90.20111025-1ubuntu1 (using .../binutils_2.22-1ubuntu1_amd64.deb) ... Unpacking replacement binutils ... Preparing to replace libattr1 1:2.4.46-3 (using .../libattr1_1%3a2.4.46-3ubuntu1_amd64.deb) ... Unpacking replacement libattr1 ... Setting up libattr1 (1:2.4.46-3ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14113 files and directories currently installed.) Preparing to replace libacl1 2.2.51-3 (using .../libacl1_2.2.51-4ubuntu1_amd64.deb) ... Unpacking replacement libacl1 ... Setting up libacl1 (2.2.51-4ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14113 files and directories currently installed.) Preparing to replace dpkg 1.16.1.1ubuntu3 (using .../dpkg_1.16.1.2ubuntu3_amd64.deb) ... Unpacking replacement dpkg ... Setting up dpkg (1.16.1.2ubuntu3) ... (Reading database ... 14113 files and directories currently installed.) Preparing to replace coreutils 8.13-3ubuntu1 (using .../coreutils_8.13-3ubuntu2_amd64.deb) ... Unpacking replacement coreutils ... Setting up coreutils (8.13-3ubuntu2) ... (Reading database ... 14113 files and directories currently installed.) Preparing to replace login 1:4.1.4.2+svn3283-3ubuntu2 (using .../login_1%3a4.1.4.2+svn3283-3ubuntu3_amd64.deb) ... Unpacking replacement login ... Setting up login (1:4.1.4.2+svn3283-3ubuntu3) ... Installing new version of config file /etc/securetty ... (Reading database ... 14113 files and directories currently installed.) Preparing to replace libncursesw5 5.9-2 (using .../libncursesw5_5.9-4_amd64.deb) ... Unpacking replacement libncursesw5 ... Preparing to replace libtinfo5 5.9-2 (using .../libtinfo5_5.9-4_amd64.deb) ... Unpacking replacement libtinfo5 ... Replacing files in old package libncurses5 ... Setting up libtinfo5 (5.9-4) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14111 files and directories currently installed.) Preparing to replace libncurses5 5.9-2 (using .../libncurses5_5.9-4_amd64.deb) ... Unpacking replacement libncurses5 ... Setting up libncurses5 (5.9-4) ... 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Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14189 files and directories currently installed.) Preparing to replace debconf 1.5.40ubuntu1 (using .../debconf_1.5.41ubuntu1_amd64.deb) ... Unpacking replacement debconf ... Setting up debconf (1.5.41ubuntu1) ... (Reading database ... 14186 files and directories currently installed.) Preparing to replace libselinux1 2.1.0-1 (using .../libselinux1_2.1.0-4ubuntu1_amd64.deb) ... Unpacking replacement libselinux1 ... Setting up libselinux1 (2.1.0-4ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Selecting previously unselected package libsqlite3-0. (Reading database ... 14186 files and directories currently installed.) Unpacking libsqlite3-0 (from .../libsqlite3-0_3.7.9-2ubuntu1_amd64.deb) ... Preparing to replace libudev0 175-0ubuntu1 (using .../libudev0_175-0ubuntu2_amd64.deb) ... Unpacking replacement libudev0 ... 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Selecting previously unselected package libheimntlm0-heimdal. Unpacking libheimntlm0-heimdal (from .../libheimntlm0-heimdal_1.5.dfsg.1-3_amd64.deb) ... Selecting previously unselected package libgssapi3-heimdal. Unpacking libgssapi3-heimdal (from .../libgssapi3-heimdal_1.5.dfsg.1-3_amd64.deb) ... Preparing to replace libsasl2-2 2.1.24~rc1.dfsg1+cvs2011-05-23-4ubuntu2 (using .../libsasl2-2_2.1.24~rc1.dfsg1+cvs2011-05-23-4ubuntu3_amd64.deb) ... Unpacking replacement libsasl2-2 ... Preparing to replace libldap-2.4-2 2.4.25-3ubuntu1 (using .../libldap-2.4-2_2.4.25-4ubuntu1_amd64.deb) ... Unpacking replacement libldap-2.4-2 ... Preparing to replace libcurl3-gnutls 7.21.7-3ubuntu1 (using .../libcurl3-gnutls_7.22.0-3ubuntu1_amd64.deb) ... Unpacking replacement libcurl3-gnutls ... Preparing to replace gpgv 1.4.11-3ubuntu1 (using .../gpgv_1.4.11-3ubuntu2_amd64.deb) ... Unpacking replacement gpgv ... Setting up gpgv (1.4.11-3ubuntu2) ... 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Preparing to replace locales 2.13+git20110622-2 (using .../locales_2.13+git20111116-1_all.deb) ... Unpacking replacement locales ... Preparing to replace dpkg-dev 1.16.1.1ubuntu3 (using .../dpkg-dev_1.16.1.2ubuntu3_amd64.deb) ... Unpacking replacement dpkg-dev ... Preparing to replace libdpkg-perl 1.16.1.1ubuntu3 (using .../libdpkg-perl_1.16.1.2ubuntu3_amd64.deb) ... Unpacking replacement libdpkg-perl ... Preparing to replace pkg-create-dbgsym 0.49 (using .../pkg-create-dbgsym_0.50_all.deb) ... Unpacking replacement pkg-create-dbgsym ... Preparing to replace pkgbinarymangler 105 (using .../pkgbinarymangler_109_all.deb) ... Unpacking replacement pkgbinarymangler ... Setting up libc-dev-bin (2.13-20ubuntu9) ... Setting up linux-libc-dev (3.2.0-3.7) ... Setting up libc6-dev (2.13-20ubuntu9) ... Setting up libgomp1 (4.6.2-5ubuntu1) ... Setting up libmpfr4 (3.1.0-3) ... Setting up cpp-4.6 (4.6.2-5ubuntu1) ... Setting up libquadmath0 (4.6.2-5ubuntu1) ... Setting up binutils (2.22-1ubuntu1) ... Setting up gcc-4.6 (4.6.2-5ubuntu1) ... Setting up libncursesw5 (5.9-4) ... Setting up libsqlite3-0 (3.7.9-2ubuntu1) ... Setting up libudev0 (175-0ubuntu2) ... Setting up module-init-tools (3.16-1ubuntu2) ... Setting up libgnutls26 (2.12.14-3) ... Setting up libkrb5support0 (1.9.1+dfsg-3ubuntu1) ... Setting up libk5crypto3 (1.9.1+dfsg-3ubuntu1) ... Setting up libkrb5-3 (1.9.1+dfsg-3ubuntu1) ... Setting up libgssapi-krb5-2 (1.9.1+dfsg-3ubuntu1) ... Setting up libroken18-heimdal (1.5.dfsg.1-3) ... Setting up libasn1-8-heimdal (1.5.dfsg.1-3) ... Setting up libhcrypto4-heimdal (1.5.dfsg.1-3) ... Setting up libheimbase1-heimdal (1.5.dfsg.1-3) ... Setting up libwind0-heimdal (1.5.dfsg.1-3) ... Setting up libhx509-5-heimdal (1.5.dfsg.1-3) ... Setting up libkrb5-26-heimdal (1.5.dfsg.1-3) ... Setting up libheimntlm0-heimdal (1.5.dfsg.1-3) ... Setting up libgssapi3-heimdal (1.5.dfsg.1-3) ... Setting up libsasl2-2 (2.1.24~rc1.dfsg1+cvs2011-05-23-4ubuntu3) ... Setting up libldap-2.4-2 (2.4.25-4ubuntu1) ... Setting up libcurl3-gnutls (7.22.0-3ubuntu1) ... Setting up initramfs-tools-bin (0.99ubuntu9) ... Setting up libklibc (1.5.25-1ubuntu1) ... Setting up klibc-utils (1.5.25-1ubuntu1) ... Setting up sysvinit-utils (2.88dsf-13.10ubuntu5) ... Setting up sysv-rc (2.88dsf-13.10ubuntu5) ... Setting up initscripts (2.88dsf-13.10ubuntu5) ... guest environment detected: Linking /run/shm to /dev/shm Setting up procps (1:3.2.8-11ubuntu4) ... Installing new version of config file /etc/init/procps.conf ... invoke-rc.d: policy-rc.d denied execution of start. Setting up locales (2.13+git20111116-1) ... Setting up pkg-create-dbgsym (0.50) ... Setting up pkgbinarymangler (109) ... Installing new version of config file /etc/pkgbinarymangler/striptranslations.blacklist ... Setting up libstdc++6-4.6-dev (4.6.2-5ubuntu1) ... Setting up perl-modules (5.14.2-5ubuntu1) ... Setting up perl (5.14.2-5ubuntu1) ... Setting up libalgorithm-diff-xs-perl (0.04-2build2) ... Setting up udev (175-0ubuntu2) ... Installing new version of config file /etc/init/udev.conf ... invoke-rc.d: policy-rc.d denied execution of restart. Removing 'diversion of /sbin/udevadm to /sbin/udevadm.upgrade by fake-udev' update-initramfs: deferring update (trigger activated) Setting up initramfs-tools (0.99ubuntu9) ... update-initramfs: deferring update (trigger activated) Setting up libdpkg-perl (1.16.1.2ubuntu3) ... Setting up dpkg-dev (1.16.1.2ubuntu3) ... Setting up g++-4.6 (4.6.2-5ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Processing triggers for initramfs-tools ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', '3905ee707401e2eb7c7ef73fe1321fa6d724f963', 'amd64', 'precise', '--nolog', '--batch', '--archive=ubuntu', '--dist=precise', '--purpose=PRIMARY', '--architecture=amd64', '--comp=universe', 'staden-io-lib_1.12.4-1build1.dsc'] Initiating build 3905ee707401e2eb7c7ef73fe1321fa6d724f963 with 8 processor cores. Automatic build of staden-io-lib_1.12.4-1build1 on allspice by sbuild/amd64 1.170.5 Build started at 20111203-1537 ****************************************************************************** staden-io-lib_1.12.4-1build1.dsc exists in cwd sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 7.0.50~), autotools-dev, zlib1g-dev sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) Checking for already installed source dependencies... debhelper: missing autotools-dev: missing zlib1g-dev: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper autotools-dev zlib1g-dev Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils file gettext gettext-base groff-base html2text intltool-debian libcroco3 libgettextpo0 libmagic1 libpipeline1 libunistring0 libxml2 man-db po-debconf Suggested packages: wamerican wordlist whois vacation dh-make gettext-doc groff less www-browser libmail-box-perl Recommended packages: curl wget lynx-cur xml-core libmail-sendmail-perl The following NEW packages will be installed: autotools-dev bsdmainutils debhelper file gettext gettext-base groff-base html2text intltool-debian libcroco3 libgettextpo0 libmagic1 libpipeline1 libunistring0 libxml2 man-db po-debconf zlib1g-dev 0 upgraded, 18 newly installed, 0 to remove and 0 not upgraded. Need to get 5858 kB of archives. After this operation, 19.1 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libpipeline1 libxml2 libcroco3 libunistring0 libgettextpo0 libmagic1 file bsdmainutils gettext-base groff-base man-db autotools-dev html2text gettext intltool-debian po-debconf debhelper zlib1g-dev Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ precise/main libpipeline1 amd64 1.2.0-5 [26.2 kB] Get:2 http://ftpmaster.internal/ubuntu/ precise/main libxml2 amd64 2.7.8.dfsg-5ubuntu1 [673 kB] Get:3 http://ftpmaster.internal/ubuntu/ precise/main libcroco3 amd64 0.6.2-2 [100 kB] Get:4 http://ftpmaster.internal/ubuntu/ precise/main libunistring0 amd64 0.9.3-5 [427 kB] Get:5 http://ftpmaster.internal/ubuntu/ precise/main libgettextpo0 amd64 0.18.1.1-5ubuntu3 [120 kB] Get:6 http://ftpmaster.internal/ubuntu/ precise/main libmagic1 amd64 5.09-2 [217 kB] Get:7 http://ftpmaster.internal/ubuntu/ precise/main file amd64 5.09-2 [19.7 kB] Get:8 http://ftpmaster.internal/ubuntu/ precise/main bsdmainutils amd64 8.2.3 [198 kB] Get:9 http://ftpmaster.internal/ubuntu/ precise/main gettext-base amd64 0.18.1.1-5ubuntu3 [80.0 kB] Get:10 http://ftpmaster.internal/ubuntu/ precise/main groff-base amd64 1.21-6 [1047 kB] Get:11 http://ftpmaster.internal/ubuntu/ precise/main man-db amd64 2.6.0.2-3 [727 kB] Get:12 http://ftpmaster.internal/ubuntu/ precise/main autotools-dev all 20110511.1 [44.7 kB] Get:13 http://ftpmaster.internal/ubuntu/ precise/main html2text amd64 1.3.2a-15 [104 kB] Get:14 http://ftpmaster.internal/ubuntu/ precise/main gettext amd64 0.18.1.1-5ubuntu3 [1188 kB] Get:15 http://ftpmaster.internal/ubuntu/ precise/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:16 http://ftpmaster.internal/ubuntu/ precise/main po-debconf amd64 1.0.16+nmu1ubuntu1 [211 kB] Get:17 http://ftpmaster.internal/ubuntu/ precise/main debhelper amd64 8.9.9ubuntu1 [477 kB] Get:18 http://ftpmaster.internal/ubuntu/ precise/main zlib1g-dev amd64 1:1.2.3.4.dfsg-3ubuntu4 [165 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 5858 kB in 0s (36.1 MB/s) Selecting previously unselected package libpipeline1. (Reading database ... 14250 files and directories currently installed.) Unpacking libpipeline1 (from .../libpipeline1_1.2.0-5_amd64.deb) ... Selecting previously unselected package libxml2. Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5ubuntu1_amd64.deb) ... Selecting previously unselected package libcroco3. Unpacking libcroco3 (from .../libcroco3_0.6.2-2_amd64.deb) ... Selecting previously unselected package libunistring0. Unpacking libunistring0 (from .../libunistring0_0.9.3-5_amd64.deb) ... Selecting previously unselected package libgettextpo0. Unpacking libgettextpo0 (from .../libgettextpo0_0.18.1.1-5ubuntu3_amd64.deb) ... Selecting previously unselected package libmagic1. Unpacking libmagic1 (from .../libmagic1_5.09-2_amd64.deb) ... Selecting previously unselected package file. Unpacking file (from .../archives/file_5.09-2_amd64.deb) ... Selecting previously unselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_8.2.3_amd64.deb) ... Selecting previously unselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.18.1.1-5ubuntu3_amd64.deb) ... Selecting previously unselected package groff-base. Unpacking groff-base (from .../groff-base_1.21-6_amd64.deb) ... Selecting previously unselected package man-db. Unpacking man-db (from .../man-db_2.6.0.2-3_amd64.deb) ... Selecting previously unselected package autotools-dev. Unpacking autotools-dev (from .../autotools-dev_20110511.1_all.deb) ... Selecting previously unselected package html2text. Unpacking html2text (from .../html2text_1.3.2a-15_amd64.deb) ... Selecting previously unselected package gettext. Unpacking gettext (from .../gettext_0.18.1.1-5ubuntu3_amd64.deb) ... Selecting previously unselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously unselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1ubuntu1_amd64.deb) ... Selecting previously unselected package debhelper. Unpacking debhelper (from .../debhelper_8.9.9ubuntu1_amd64.deb) ... Selecting previously unselected package zlib1g-dev. Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3ubuntu4_amd64.deb) ... Setting up libpipeline1 (1.2.0-5) ... Setting up libxml2 (2.7.8.dfsg-5ubuntu1) ... Setting up libcroco3 (0.6.2-2) ... Setting up libunistring0 (0.9.3-5) ... Setting up libgettextpo0 (0.18.1.1-5ubuntu3) ... Setting up libmagic1 (5.09-2) ... Setting up file (5.09-2) ... Setting up bsdmainutils (8.2.3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up gettext-base (0.18.1.1-5ubuntu3) ... Setting up groff-base (1.21-6) ... Setting up man-db (2.6.0.2-3) ... Building database of manual pages ... Setting up autotools-dev (20110511.1) ... Setting up html2text (1.3.2a-15) ... Setting up gettext (0.18.1.1-5ubuntu3) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu1ubuntu1) ... Setting up debhelper (8.9.9ubuntu1) ... Setting up zlib1g-dev (1:1.2.3.4.dfsg-3ubuntu4) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.13-20ubuntu9 make_3.81-8.1ubuntu1 dpkg-dev_1.16.1.2ubuntu3 gcc-4.6_4.6.2-5ubuntu1 g++-4.6_4.6.2-5ubuntu1 binutils_2.22-1ubuntu1 libstdc++6-4.6-dev_4.6.2-5ubuntu1 libstdc++6_4.6.2-5ubuntu1 ------------------------------------------------------------------------------ gpgv: Signature made Sat Dec 3 04:36:50 2011 UTC using DSA key ID C6CEA0C9 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./staden-io-lib_1.12.4-1build1.dsc dpkg-source: info: extracting staden-io-lib in staden-io-lib-1.12.4 dpkg-source: info: unpacking staden-io-lib_1.12.4.orig.tar.gz dpkg-source: info: applying staden-io-lib_1.12.4-1build1.diff.gz dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor): -D_FORTIFY_SOURCE=2 dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor): -Wl,-Bsymbolic-functions -Wl,-z,relro dpkg-buildpackage: source package staden-io-lib dpkg-buildpackage: source version 1.12.4-1build1 dpkg-source --before-build staden-io-lib-1.12.4 dpkg-buildpackage: host architecture amd64 /usr/bin/fakeroot debian/rules clean dh clean dh_testdir dh_auto_clean dh_clean debian/rules build dh build dh_testdir dh_auto_configure checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether to enable maintainer-specific portions of Makefiles... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of gcc... none checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for /usr/bin/ld option to reload object files... -r checking for BSD-compatible nm... /usr/bin/nm -B checking whether ln -s works... yes checking how to recognise dependent libraries... pass_all checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking how to run the C++ preprocessor... g++ -E checking for g77... no checking for xlf... no checking for f77... no checking for frt... no checking for pgf77... no checking for cf77... no checking for fort77... no checking for fl32... no checking for af77... no checking for xlf90... no checking for f90... no checking for pgf90... no checking for pghpf... no checking for epcf90... no checking for gfortran... no checking for g95... no checking for xlf95... no checking for f95... no checking for fort... no checking for ifort... no checking for ifc... no checking for efc... no checking for pgf95... no checking for lf95... no checking for ftn... no checking whether we are using the GNU Fortran 77 compiler... no checking whether accepts -g... no checking the maximum length of command line arguments... 32768 checking command to parse /usr/bin/nm -B output from gcc object... ok checking for objdir... .libs checking for ar... ar checking for ranlib... ranlib checking for strip... strip checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC checking if gcc PIC flag -fPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes configure: creating libtool appending configuration tag "CXX" to libtool checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC checking if g++ PIC flag -fPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate appending configuration tag "F77" to libtool host=x86_64-pc-linux-gnu Fixing libtool for -rpath problems. checking for gawk... (cached) mawk checking for curl-config... no checking whether libcurl is usable... no checking for inflateEnd in -lz... yes checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking for library containing gethostbyname... none required checking for library containing socket... none required checking whether byte ordering is bigendian... no checking for ANSI C header files... (cached) yes checking for sys/wait.h that is POSIX.1 compatible... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for unistd.h... (cached) yes checking for zlib.h... (cached) yes checking whether byte ordering is bigendian... (cached) no checking size of short... 2 checking size of int... 4 checking size of long... 8 checking for inline... inline checking for mode_t... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for _LARGEFILE_SOURCE value needed for large files... no checking for library containing cos... -lm checking for strdup... yes configure: creating ./config.status config.status: creating Makefile config.status: creating io_lib/Makefile config.status: creating progs/Makefile config.status: creating tests/Makefile config.status: creating io_lib-config config.status: creating io_lib/os.h config.status: creating io_lib_config.h config.status: executing depfiles commands dh_auto_build make[1]: Entering directory `/build/buildd/staden-io-lib-1.12.4' make all-recursive make[2]: Entering directory `/build/buildd/staden-io-lib-1.12.4' Making all in io_lib make[3]: Entering directory `/build/buildd/staden-io-lib-1.12.4/io_lib' /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c -o libstaden_read_la-Read.lo `test -f 'Read.c' || echo './'`Read.c mkdir .libs gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c Read.c -fPIC -DPIC -o .libs/libstaden_read_la-Read.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c Read.c -o libstaden_read_la-Read.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c -o libstaden_read_la-scf_extras.lo `test -f 'scf_extras.c' || echo './'`scf_extras.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c scf_extras.c -fPIC -DPIC -o .libs/libstaden_read_la-scf_extras.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c scf_extras.c -o libstaden_read_la-scf_extras.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c -o libstaden_read_la-translate.lo `test -f 'translate.c' || echo './'`translate.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c translate.c -fPIC -DPIC -o .libs/libstaden_read_la-translate.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c translate.c -o 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-I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c ztr.c -fPIC -DPIC -o .libs/libstaden_read_la-ztr.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c ztr.c -o libstaden_read_la-ztr.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c -o libstaden_read_la-ztr_translate.lo `test -f 'ztr_translate.c' || echo './'`ztr_translate.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c ztr_translate.c -fPIC -DPIC -o .libs/libstaden_read_la-ztr_translate.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c ztr_translate.c -o libstaden_read_la-ztr_translate.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c -o libstaden_read_la-deflate_interlaced.lo `test -f 'deflate_interlaced.c' || echo './'`deflate_interlaced.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c deflate_interlaced.c -fPIC -DPIC -o .libs/libstaden_read_la-deflate_interlaced.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c deflate_interlaced.c -o libstaden_read_la-deflate_interlaced.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c -o libstaden_read_la-fpoint.lo `test -f 'fpoint.c' || echo './'`fpoint.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c fpoint.c -fPIC -DPIC -o .libs/libstaden_read_la-fpoint.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c fpoint.c -o libstaden_read_la-fpoint.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c -o libstaden_read_la-seqIOABI.lo `test -f 'seqIOABI.c' || echo './'`seqIOABI.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c seqIOABI.c -fPIC -DPIC -o .libs/libstaden_read_la-seqIOABI.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c seqIOABI.c -o libstaden_read_la-seqIOABI.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c -o libstaden_read_la-seqIOALF.lo `test -f 'seqIOALF.c' || echo './'`seqIOALF.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c seqIOALF.c -fPIC -DPIC -o .libs/libstaden_read_la-seqIOALF.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c seqIOALF.c -o libstaden_read_la-seqIOALF.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c -o libstaden_read_la-ctfCompress.lo `test -f 'ctfCompress.c' || echo './'`ctfCompress.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c ctfCompress.c -fPIC -DPIC -o .libs/libstaden_read_la-ctfCompress.o ctfCompress.c: In function 'ctfCompress2': ctfCompress.c:271:4: warning: format '%d' expects argument of type 'int', but argument 7 has type 'size_t' [-Wformat] ctfCompress.c:271:4: warning: format '%d' expects argument of type 'int', but argument 8 has type 'size_t' [-Wformat] ctfCompress.c: In function 'ctfCompress3': ctfCompress.c:608:4: warning: format '%d' expects argument of type 'int', but argument 8 has type 'size_t' [-Wformat] ctfCompress.c:608:4: warning: format '%d' expects argument of type 'int', but argument 9 has type 'size_t' [-Wformat] gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c ctfCompress.c -o libstaden_read_la-ctfCompress.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c -o libstaden_read_la-seqIOCTF.lo `test -f 'seqIOCTF.c' || echo './'`seqIOCTF.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c seqIOCTF.c -fPIC -DPIC -o .libs/libstaden_read_la-seqIOCTF.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c seqIOCTF.c -o libstaden_read_la-seqIOCTF.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c -o libstaden_read_la-expFileIO.lo `test -f 'expFileIO.c' || echo './'`expFileIO.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c expFileIO.c -fPIC -DPIC -o .libs/libstaden_read_la-expFileIO.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c expFileIO.c -o libstaden_read_la-expFileIO.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c -o libstaden_read_la-seqIOPlain.lo `test -f 'seqIOPlain.c' || echo './'`seqIOPlain.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c seqIOPlain.c -fPIC -DPIC -o .libs/libstaden_read_la-seqIOPlain.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c seqIOPlain.c -o libstaden_read_la-seqIOPlain.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c -o libstaden_read_la-misc_scf.lo `test -f 'misc_scf.c' || echo './'`misc_scf.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c misc_scf.c -fPIC -DPIC -o .libs/libstaden_read_la-misc_scf.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c misc_scf.c -o libstaden_read_la-misc_scf.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c -o libstaden_read_la-read_scf.lo `test -f 'read_scf.c' || echo './'`read_scf.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c read_scf.c -fPIC -DPIC -o .libs/libstaden_read_la-read_scf.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c read_scf.c -o libstaden_read_la-read_scf.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c -o libstaden_read_la-write_scf.lo `test -f 'write_scf.c' || echo './'`write_scf.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c write_scf.c -fPIC -DPIC -o .libs/libstaden_read_la-write_scf.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c write_scf.c -o libstaden_read_la-write_scf.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c -o libstaden_read_la-sff.lo `test -f 'sff.c' || echo './'`sff.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c sff.c -fPIC -DPIC -o .libs/libstaden_read_la-sff.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c sff.c -o libstaden_read_la-sff.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c -o libstaden_read_la-srf.lo `test -f 'srf.c' || echo './'`srf.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c srf.c -fPIC -DPIC -o .libs/libstaden_read_la-srf.o srf.c: In function 'srf_find_trace': srf.c:2025:11: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c srf.c -o libstaden_read_la-srf.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c -o libstaden_read_la-array.lo `test -f 'array.c' || echo './'`array.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c array.c -fPIC -DPIC -o .libs/libstaden_read_la-array.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c array.c -o libstaden_read_la-array.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c -o libstaden_read_la-compress.lo `test -f 'compress.c' || echo './'`compress.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c compress.c -fPIC -DPIC -o .libs/libstaden_read_la-compress.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c compress.c -o libstaden_read_la-compress.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c -o libstaden_read_la-error.lo `test -f 'error.c' || echo './'`error.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c error.c -fPIC -DPIC -o .libs/libstaden_read_la-error.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c error.c -o libstaden_read_la-error.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c -o libstaden_read_la-files.lo `test -f 'files.c' || echo './'`files.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c files.c -fPIC -DPIC -o .libs/libstaden_read_la-files.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c files.c -o libstaden_read_la-files.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c -o libstaden_read_la-find.lo `test -f 'find.c' || echo './'`find.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c find.c -fPIC -DPIC -o .libs/libstaden_read_la-find.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c find.c -o libstaden_read_la-find.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c -o libstaden_read_la-mach-io.lo `test -f 'mach-io.c' || echo './'`mach-io.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c mach-io.c -fPIC -DPIC -o .libs/libstaden_read_la-mach-io.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c mach-io.c -o libstaden_read_la-mach-io.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c -o libstaden_read_la-open_trace_file.lo `test -f 'open_trace_file.c' || echo './'`open_trace_file.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c open_trace_file.c -fPIC -DPIC -o .libs/libstaden_read_la-open_trace_file.o open_trace_file.c: In function 'sff_hash_query': open_trace_file.c:537:14: warning: assignment from incompatible pointer type [enabled by default] open_trace_file.c: In function 'find_file_sff': open_trace_file.c:798:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] open_trace_file.c: In function 'find_file_dir': open_trace_file.c:929:11: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] open_trace_file.c:940:8: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] open_trace_file.c:950:8: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c open_trace_file.c -o libstaden_read_la-open_trace_file.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c -o libstaden_read_la-read_alloc.lo `test -f 'read_alloc.c' || echo './'`read_alloc.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c read_alloc.c -fPIC -DPIC -o .libs/libstaden_read_la-read_alloc.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c read_alloc.c -o libstaden_read_la-read_alloc.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c -o libstaden_read_la-strings.lo `test -f 'strings.c' || echo './'`strings.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c strings.c -fPIC -DPIC -o .libs/libstaden_read_la-strings.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c strings.c -o libstaden_read_la-strings.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c -o libstaden_read_la-traceType.lo `test -f 'traceType.c' || echo './'`traceType.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c traceType.c -fPIC -DPIC -o .libs/libstaden_read_la-traceType.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c traceType.c -o libstaden_read_la-traceType.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c -o libstaden_read_la-xalloc.lo `test -f 'xalloc.c' || echo './'`xalloc.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c xalloc.c -fPIC -DPIC -o .libs/libstaden_read_la-xalloc.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c xalloc.c -o libstaden_read_la-xalloc.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c -o libstaden_read_la-vlen.lo `test -f 'vlen.c' || echo './'`vlen.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c vlen.c -fPIC -DPIC -o .libs/libstaden_read_la-vlen.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c vlen.c -o libstaden_read_la-vlen.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c -o libstaden_read_la-hash_table.lo `test -f 'hash_table.c' || echo './'`hash_table.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c hash_table.c -fPIC -DPIC -o .libs/libstaden_read_la-hash_table.o hash_table.c: In function 'HashFileExtract': hash_table.c:1506:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] hash_table.c:1516:10: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] hash_table.c:1526:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] hash_table.c: In function 'HashFileQuery': hash_table.c:1368:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] hash_table.c:1369:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] hash_table.c:1372:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] hash_table.c:1376:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] hash_table.c: In function 'HashFileFopen': hash_table.c:1140:11: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] hash_table.c:1156:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] hash_table.c:1157:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] hash_table.c:1169:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] hash_table.c:1170:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c hash_table.c -o libstaden_read_la-hash_table.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c -o libstaden_read_la-jenkins_lookup3.lo `test -f 'jenkins_lookup3.c' || echo './'`jenkins_lookup3.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c jenkins_lookup3.c -fPIC -DPIC -o .libs/libstaden_read_la-jenkins_lookup3.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c jenkins_lookup3.c -o libstaden_read_la-jenkins_lookup3.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c -o libstaden_read_la-mFILE.lo `test -f 'mFILE.c' || echo './'`mFILE.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c mFILE.c -fPIC -DPIC -o .libs/libstaden_read_la-mFILE.o mFILE.c: In function 'mfflush': mFILE.c:493:11: warning: ignoring return value of 'ftruncate', declared with attribute warn_unused_result [-Wunused-result] gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c mFILE.c -o libstaden_read_la-mFILE.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c -o libstaden_read_la-pooled_alloc.lo `test -f 'pooled_alloc.c' || echo './'`pooled_alloc.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c pooled_alloc.c -fPIC -DPIC -o .libs/libstaden_read_la-pooled_alloc.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c pooled_alloc.c -o libstaden_read_la-pooled_alloc.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o libstaden-read.la -rpath /usr/lib -version-info 2:2:1 libstaden_read_la-Read.lo libstaden_read_la-scf_extras.lo libstaden_read_la-translate.lo libstaden_read_la-compression.lo libstaden_read_la-ztr.lo libstaden_read_la-ztr_translate.lo libstaden_read_la-deflate_interlaced.lo libstaden_read_la-fpoint.lo libstaden_read_la-seqIOABI.lo libstaden_read_la-seqIOALF.lo libstaden_read_la-ctfCompress.lo libstaden_read_la-seqIOCTF.lo libstaden_read_la-expFileIO.lo libstaden_read_la-seqIOPlain.lo libstaden_read_la-misc_scf.lo libstaden_read_la-read_scf.lo libstaden_read_la-write_scf.lo libstaden_read_la-sff.lo libstaden_read_la-srf.lo libstaden_read_la-array.lo libstaden_read_la-compress.lo libstaden_read_la-error.lo libstaden_read_la-files.lo libstaden_read_la-find.lo libstaden_read_la-mach-io.lo libstaden_read_la-open_trace_file.lo libstaden_read_la-read_alloc.lo libstaden_read_la-strings.lo libstaden_read_la-traceType.lo libstaden_read_la-xalloc.lo libstaden_read_la-vlen.lo libstaden_read_la-hash_table.lo libstaden_read_la-jenkins_lookup3.lo libstaden_read_la-mFILE.lo libstaden_read_la-pooled_alloc.lo -lz -lm gcc -shared .libs/libstaden_read_la-Read.o .libs/libstaden_read_la-scf_extras.o .libs/libstaden_read_la-translate.o .libs/libstaden_read_la-compression.o .libs/libstaden_read_la-ztr.o .libs/libstaden_read_la-ztr_translate.o .libs/libstaden_read_la-deflate_interlaced.o .libs/libstaden_read_la-fpoint.o .libs/libstaden_read_la-seqIOABI.o .libs/libstaden_read_la-seqIOALF.o .libs/libstaden_read_la-ctfCompress.o .libs/libstaden_read_la-seqIOCTF.o .libs/libstaden_read_la-expFileIO.o .libs/libstaden_read_la-seqIOPlain.o .libs/libstaden_read_la-misc_scf.o .libs/libstaden_read_la-read_scf.o .libs/libstaden_read_la-write_scf.o .libs/libstaden_read_la-sff.o .libs/libstaden_read_la-srf.o .libs/libstaden_read_la-array.o .libs/libstaden_read_la-compress.o .libs/libstaden_read_la-error.o .libs/libstaden_read_la-files.o .libs/libstaden_read_la-find.o .libs/libstaden_read_la-mach-io.o .libs/libstaden_read_la-open_trace_file.o .libs/libstaden_read_la-read_alloc.o .libs/libstaden_read_la-strings.o .libs/libstaden_read_la-traceType.o .libs/libstaden_read_la-xalloc.o .libs/libstaden_read_la-vlen.o .libs/libstaden_read_la-hash_table.o .libs/libstaden_read_la-jenkins_lookup3.o .libs/libstaden_read_la-mFILE.o .libs/libstaden_read_la-pooled_alloc.o -lz -lm -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-soname -Wl,libstaden-read.so.1 -o .libs/libstaden-read.so.1.1.2 (cd .libs && rm -f libstaden-read.so.1 && ln -s libstaden-read.so.1.1.2 libstaden-read.so.1) (cd .libs && rm -f libstaden-read.so && ln -s libstaden-read.so.1.1.2 libstaden-read.so) ar cru .libs/libstaden-read.a libstaden_read_la-Read.o libstaden_read_la-scf_extras.o libstaden_read_la-translate.o libstaden_read_la-compression.o libstaden_read_la-ztr.o libstaden_read_la-ztr_translate.o libstaden_read_la-deflate_interlaced.o libstaden_read_la-fpoint.o libstaden_read_la-seqIOABI.o libstaden_read_la-seqIOALF.o libstaden_read_la-ctfCompress.o libstaden_read_la-seqIOCTF.o libstaden_read_la-expFileIO.o libstaden_read_la-seqIOPlain.o libstaden_read_la-misc_scf.o libstaden_read_la-read_scf.o libstaden_read_la-write_scf.o libstaden_read_la-sff.o libstaden_read_la-srf.o libstaden_read_la-array.o libstaden_read_la-compress.o libstaden_read_la-error.o libstaden_read_la-files.o libstaden_read_la-find.o libstaden_read_la-mach-io.o libstaden_read_la-open_trace_file.o libstaden_read_la-read_alloc.o libstaden_read_la-strings.o libstaden_read_la-traceType.o libstaden_read_la-xalloc.o libstaden_read_la-vlen.o libstaden_read_la-hash_table.o libstaden_read_la-jenkins_lookup3.o libstaden_read_la-mFILE.o libstaden_read_la-pooled_alloc.o ranlib .libs/libstaden-read.a creating libstaden-read.la (cd .libs && rm -f libstaden-read.la && ln -s ../libstaden-read.la libstaden-read.la) make[3]: Leaving directory `/build/buildd/staden-io-lib-1.12.4/io_lib' Making all in progs make[3]: Entering directory `/build/buildd/staden-io-lib-1.12.4/progs' gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c convert_trace.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o convert_trace convert_trace.o ../io_lib/libstaden-read.la -lm mkdir .libs gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/convert_trace convert_trace.o ../io_lib/.libs/libstaden-read.so -lm creating convert_trace gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c makeSCF.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o makeSCF makeSCF.o ../io_lib/libstaden-read.la -lm gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/makeSCF makeSCF.o ../io_lib/.libs/libstaden-read.so -lm creating makeSCF gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c extract_seq.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o extract_seq extract_seq.o ../io_lib/libstaden-read.la -lm gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/extract_seq extract_seq.o ../io_lib/.libs/libstaden-read.so -lm creating extract_seq gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c extract_qual.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o extract_qual extract_qual.o ../io_lib/libstaden-read.la -lm gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/extract_qual extract_qual.o ../io_lib/.libs/libstaden-read.so -lm creating extract_qual gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c extract_fastq.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o extract_fastq extract_fastq.o ../io_lib/libstaden-read.la -lm gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/extract_fastq extract_fastq.o ../io_lib/.libs/libstaden-read.so -lm creating extract_fastq gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c index_tar.c index_tar.c: In function 'main': index_tar.c:72:26: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] index_tar.c:82:22: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o index_tar index_tar.o -lm gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o index_tar index_tar.o -lm gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c scf_dump.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o scf_dump scf_dump.o ../io_lib/libstaden-read.la -lm gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/scf_dump scf_dump.o ../io_lib/.libs/libstaden-read.so -lm creating scf_dump gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c scf_info.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o scf_info scf_info.o ../io_lib/libstaden-read.la -lm gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/scf_info scf_info.o ../io_lib/.libs/libstaden-read.so -lm creating scf_info gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c scf_update.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o scf_update scf_update.o ../io_lib/libstaden-read.la -lm gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/scf_update scf_update.o ../io_lib/.libs/libstaden-read.so -lm creating scf_update gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c get_comment.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o get_comment get_comment.o ../io_lib/libstaden-read.la -lm gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/get_comment get_comment.o ../io_lib/.libs/libstaden-read.so -lm creating get_comment gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c hash_tar.c hash_tar.c: In function 'accumulate': hash_tar.c:136:26: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] hash_tar.c:146:22: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o hash_tar hash_tar.o ../io_lib/libstaden-read.la -lm gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/hash_tar hash_tar.o ../io_lib/.libs/libstaden-read.so -lm creating hash_tar gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c hash_extract.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o hash_extract hash_extract.o ../io_lib/libstaden-read.la -lm gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/hash_extract hash_extract.o ../io_lib/.libs/libstaden-read.so -lm creating hash_extract gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c hash_list.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o hash_list hash_list.o ../io_lib/libstaden-read.la -lm gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/hash_list hash_list.o ../io_lib/.libs/libstaden-read.so -lm creating hash_list gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c trace_dump.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o trace_dump trace_dump.o ../io_lib/libstaden-read.la -lm gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/trace_dump trace_dump.o ../io_lib/.libs/libstaden-read.so -lm creating trace_dump gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c hash_sff.c hash_sff.c: In function 'main': hash_sff.c:230:11: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] hash_sff.c:258:11: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o hash_sff hash_sff.o ../io_lib/libstaden-read.la -lm gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/hash_sff hash_sff.o ../io_lib/.libs/libstaden-read.so -lm creating hash_sff gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c append_sff.c append_sff.c: In function 'main': append_sff.c:116:10: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o append_sff append_sff.o ../io_lib/libstaden-read.la -lm gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/append_sff append_sff.o ../io_lib/.libs/libstaden-read.so -lm creating append_sff gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c ztr_dump.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o ztr_dump ztr_dump.o ../io_lib/libstaden-read.la -lm gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/ztr_dump ztr_dump.o ../io_lib/.libs/libstaden-read.so -lm creating ztr_dump gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c srf_dump_all.c srf_dump_all.c: In function 'read_filter_from_file': srf_dump_all.c:506:10: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o srf_dump_all srf_dump_all.o ../io_lib/libstaden-read.la -lm gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/srf_dump_all srf_dump_all.o ../io_lib/.libs/libstaden-read.so -lm creating srf_dump_all gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c srf_index_hash.c srf_index_hash.c: In function 'main': srf_index_hash.c:138:14: warning: ignoring return value of 'ftruncate', declared with attribute warn_unused_result [-Wunused-result] /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o srf_index_hash srf_index_hash.o ../io_lib/libstaden-read.la -lm gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/srf_index_hash srf_index_hash.o ../io_lib/.libs/libstaden-read.so -lm creating srf_index_hash gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c srf_extract_linear.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o srf_extract_linear srf_extract_linear.o ../io_lib/libstaden-read.la -lm gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/srf_extract_linear srf_extract_linear.o ../io_lib/.libs/libstaden-read.so -lm creating srf_extract_linear gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c srf_extract_hash.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o srf_extract_hash srf_extract_hash.o ../io_lib/libstaden-read.la -lm gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/srf_extract_hash srf_extract_hash.o ../io_lib/.libs/libstaden-read.so -lm creating srf_extract_hash gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c srf2fastq.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o srf2fastq srf2fastq.o ../io_lib/libstaden-read.la -lm gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/srf2fastq srf2fastq.o ../io_lib/.libs/libstaden-read.so -lm creating srf2fastq gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c srf2fasta.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o srf2fasta srf2fasta.o ../io_lib/libstaden-read.la -lm gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/srf2fasta srf2fasta.o ../io_lib/.libs/libstaden-read.so -lm creating srf2fasta gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c srf_filter.c srf_filter.c: In function 'dump_read_filter': srf_filter.c:457:17: warning: format '%d' expects argument of type 'int', but argument 2 has type 'uint64_t' [-Wformat] srf_filter.c: In function 'read_filter_from_file': srf_filter.c:186:10: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o srf_filter srf_filter.o ../io_lib/libstaden-read.la -lm gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/srf_filter srf_filter.o ../io_lib/.libs/libstaden-read.so -lm creating srf_filter gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c srf_info.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o srf_info srf_info.o ../io_lib/libstaden-read.la -lm gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/srf_info srf_info.o ../io_lib/.libs/libstaden-read.so -lm creating srf_info gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c srf_list.c srf_list.c: In function 'main': srf_list.c:158:6: warning: format '%d' expects argument of type 'int', but argument 3 has type 'int64_t' [-Wformat] /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o srf_list srf_list.o ../io_lib/libstaden-read.la -lm gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/srf_list srf_list.o ../io_lib/.libs/libstaden-read.so -lm creating srf_list make[3]: Leaving directory `/build/buildd/staden-io-lib-1.12.4/progs' Making all in tests make[3]: Entering directory `/build/buildd/staden-io-lib-1.12.4/tests' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/build/buildd/staden-io-lib-1.12.4/tests' make[3]: Entering directory `/build/buildd/staden-io-lib-1.12.4' make[3]: Nothing to be done for `all-am'. make[3]: Leaving directory `/build/buildd/staden-io-lib-1.12.4' make[2]: Leaving directory `/build/buildd/staden-io-lib-1.12.4' make[1]: Leaving directory `/build/buildd/staden-io-lib-1.12.4' dh_auto_test make[1]: Entering directory `/build/buildd/staden-io-lib-1.12.4' Making check in io_lib make[2]: Entering directory `/build/buildd/staden-io-lib-1.12.4/io_lib' make[2]: Nothing to be done for `check'. make[2]: Leaving directory `/build/buildd/staden-io-lib-1.12.4/io_lib' Making check in progs make[2]: Entering directory `/build/buildd/staden-io-lib-1.12.4/progs' make[2]: Nothing to be done for `check'. make[2]: Leaving directory `/build/buildd/staden-io-lib-1.12.4/progs' Making check in tests make[2]: Entering directory `/build/buildd/staden-io-lib-1.12.4/tests' make check-TESTS make[3]: Entering directory `/build/buildd/staden-io-lib-1.12.4/tests' PASS: srf2fasta.test PASS: srf2fastq.test PASS: srf_info.test Reading archive ./data/both.srf. PASS: srf_filter.test NB: The next line is expected to be an error message Malformed or missing index hash. Consider running srf_index_hash Nbuckets = 16 Nused = 20 Avg chain = 1.250000 Chain var.= 0.812500 %age full = 81.250000 max len = 3 Chain 0 = 3 Chain 1 = 8 Chain 2 = 3 Chain 3 = 2 PASS: srf_index.test ================== All 5 tests passed ================== make[3]: Leaving directory `/build/buildd/staden-io-lib-1.12.4/tests' make[2]: Leaving directory `/build/buildd/staden-io-lib-1.12.4/tests' make[2]: Entering directory `/build/buildd/staden-io-lib-1.12.4' make[2]: Nothing to be done for `check-am'. make[2]: Leaving directory `/build/buildd/staden-io-lib-1.12.4' make[1]: Leaving directory `/build/buildd/staden-io-lib-1.12.4' /usr/bin/fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_installdirs -a dh_auto_install -a make[1]: Entering directory `/build/buildd/staden-io-lib-1.12.4' Making install in io_lib make[2]: Entering directory `/build/buildd/staden-io-lib-1.12.4/io_lib' make[3]: Entering directory `/build/buildd/staden-io-lib-1.12.4/io_lib' test -z "/usr/lib" || mkdir -p -- "/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/lib" /bin/bash ../libtool --mode=install /usr/bin/install -c 'libstaden-read.la' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/lib/libstaden-read.la' /usr/bin/install -c .libs/libstaden-read.so.1.1.2 /build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/lib/libstaden-read.so.1.1.2 (cd /build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/lib && { ln -s -f libstaden-read.so.1.1.2 libstaden-read.so.1 || { rm -f libstaden-read.so.1 && ln -s libstaden-read.so.1.1.2 libstaden-read.so.1; }; }) (cd /build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/lib && { ln -s -f libstaden-read.so.1.1.2 libstaden-read.so || { rm -f libstaden-read.so && ln -s libstaden-read.so.1.1.2 libstaden-read.so; }; }) /usr/bin/install -c .libs/libstaden-read.lai /build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/lib/libstaden-read.la /usr/bin/install -c .libs/libstaden-read.a /build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/lib/libstaden-read.a chmod 644 /build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/lib/libstaden-read.a ranlib /build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/lib/libstaden-read.a libtool: install: warning: remember to run `libtool --finish /usr/lib' make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/buildd/staden-io-lib-1.12.4/io_lib' make[2]: Leaving directory `/build/buildd/staden-io-lib-1.12.4/io_lib' Making install in progs make[2]: Entering directory `/build/buildd/staden-io-lib-1.12.4/progs' make[3]: Entering directory `/build/buildd/staden-io-lib-1.12.4/progs' test -z "/usr/bin" || mkdir -p -- "/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/bin" /bin/bash ../libtool --mode=install /usr/bin/install -c 'convert_trace' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/bin/convert_trace' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib' /usr/bin/install -c .libs/convert_trace /build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/bin/convert_trace /bin/bash ../libtool --mode=install /usr/bin/install -c 'makeSCF' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/bin/makeSCF' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib' /usr/bin/install -c .libs/makeSCF /build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/bin/makeSCF /bin/bash ../libtool --mode=install /usr/bin/install -c 'extract_seq' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/bin/extract_seq' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib' /usr/bin/install -c .libs/extract_seq /build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/bin/extract_seq /bin/bash ../libtool --mode=install /usr/bin/install -c 'extract_qual' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/bin/extract_qual' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib' /usr/bin/install -c .libs/extract_qual /build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/bin/extract_qual /bin/bash ../libtool --mode=install /usr/bin/install -c 'extract_fastq' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/bin/extract_fastq' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib' /usr/bin/install -c .libs/extract_fastq /build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/bin/extract_fastq /bin/bash ../libtool --mode=install /usr/bin/install -c 'index_tar' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/bin/index_tar' /usr/bin/install -c index_tar /build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/bin/index_tar /bin/bash ../libtool --mode=install /usr/bin/install -c 'scf_dump' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/bin/scf_dump' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib' /usr/bin/install -c .libs/scf_dump /build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/bin/scf_dump /bin/bash ../libtool --mode=install /usr/bin/install -c 'scf_info' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/bin/scf_info' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib' /usr/bin/install -c .libs/scf_info /build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/bin/scf_info /bin/bash ../libtool --mode=install /usr/bin/install -c 'scf_update' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/bin/scf_update' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib' /usr/bin/install -c .libs/scf_update /build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/bin/scf_update /bin/bash ../libtool --mode=install /usr/bin/install -c 'get_comment' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/bin/get_comment' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib' /usr/bin/install -c .libs/get_comment /build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/bin/get_comment /bin/bash ../libtool --mode=install /usr/bin/install -c 'hash_tar' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/bin/hash_tar' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib' /usr/bin/install -c .libs/hash_tar /build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/bin/hash_tar /bin/bash ../libtool --mode=install /usr/bin/install -c 'hash_extract' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/bin/hash_extract' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib' /usr/bin/install -c .libs/hash_extract /build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/bin/hash_extract /bin/bash ../libtool --mode=install /usr/bin/install -c 'hash_list' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/bin/hash_list' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib' /usr/bin/install -c .libs/hash_list /build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/bin/hash_list /bin/bash ../libtool --mode=install /usr/bin/install -c 'trace_dump' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/bin/trace_dump' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib' /usr/bin/install -c .libs/trace_dump /build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/bin/trace_dump /bin/bash ../libtool --mode=install /usr/bin/install -c 'hash_sff' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/bin/hash_sff' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib' /usr/bin/install -c .libs/hash_sff /build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/bin/hash_sff /bin/bash ../libtool --mode=install /usr/bin/install -c 'append_sff' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/bin/append_sff' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib' /usr/bin/install -c .libs/append_sff /build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/bin/append_sff /bin/bash ../libtool --mode=install /usr/bin/install -c 'ztr_dump' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/bin/ztr_dump' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib' /usr/bin/install -c .libs/ztr_dump /build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/bin/ztr_dump /bin/bash ../libtool --mode=install /usr/bin/install -c 'srf_dump_all' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/bin/srf_dump_all' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib' /usr/bin/install -c .libs/srf_dump_all /build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/bin/srf_dump_all /bin/bash ../libtool --mode=install /usr/bin/install -c 'srf_index_hash' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/bin/srf_index_hash' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib' /usr/bin/install -c .libs/srf_index_hash /build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/bin/srf_index_hash /bin/bash ../libtool --mode=install /usr/bin/install -c 'srf_extract_linear' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/bin/srf_extract_linear' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib' /usr/bin/install -c .libs/srf_extract_linear /build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/bin/srf_extract_linear /bin/bash ../libtool --mode=install /usr/bin/install -c 'srf_extract_hash' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/bin/srf_extract_hash' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib' /usr/bin/install -c .libs/srf_extract_hash /build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/bin/srf_extract_hash /bin/bash ../libtool --mode=install /usr/bin/install -c 'srf2fastq' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/bin/srf2fastq' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib' /usr/bin/install -c .libs/srf2fastq /build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/bin/srf2fastq /bin/bash ../libtool --mode=install /usr/bin/install -c 'srf2fasta' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/bin/srf2fasta' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib' /usr/bin/install -c .libs/srf2fasta /build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/bin/srf2fasta /bin/bash ../libtool --mode=install /usr/bin/install -c 'srf_filter' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/bin/srf_filter' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib' /usr/bin/install -c .libs/srf_filter /build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/bin/srf_filter /bin/bash ../libtool --mode=install /usr/bin/install -c 'srf_info' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/bin/srf_info' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib' /usr/bin/install -c .libs/srf_info /build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/bin/srf_info /bin/bash ../libtool --mode=install /usr/bin/install -c 'srf_list' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/bin/srf_list' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib' /usr/bin/install -c .libs/srf_list /build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/bin/srf_list make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/buildd/staden-io-lib-1.12.4/progs' make[2]: Leaving directory `/build/buildd/staden-io-lib-1.12.4/progs' Making install in tests make[2]: Entering directory `/build/buildd/staden-io-lib-1.12.4/tests' make[3]: Entering directory `/build/buildd/staden-io-lib-1.12.4/tests' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/buildd/staden-io-lib-1.12.4/tests' make[2]: Leaving directory `/build/buildd/staden-io-lib-1.12.4/tests' make[2]: Entering directory `/build/buildd/staden-io-lib-1.12.4' make[3]: Entering directory `/build/buildd/staden-io-lib-1.12.4' test -z "/usr/bin" || mkdir -p -- "/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/bin" /usr/bin/install -c 'io_lib-config' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/bin/io_lib-config' test -z "/usr/share/man/man1" || mkdir -p -- "/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/share/man/man1" /usr/bin/install -c -m 644 './man/man1/srf_index_hash.1' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/share/man/man1/srf_index_hash.1' /usr/bin/install -c -m 644 './man/man1/srf_info.1' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/share/man/man1/srf_info.1' /usr/bin/install -c -m 644 './man/man1/srf_list.1' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/share/man/man1/srf_list.1' /usr/bin/install -c -m 644 './man/man1/srf2fasta.1' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/share/man/man1/srf2fasta.1' /usr/bin/install -c -m 644 './man/man1/srf2fastq.1' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/share/man/man1/srf2fastq.1' test -z "/usr/share/man/man3" || mkdir -p -- "/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/share/man/man3" /usr/bin/install -c -m 644 './man/man3/read_scf_header.3' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/share/man/man3/read_scf_header.3' /usr/bin/install -c -m 644 './man/man3/read_allocate.3' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/share/man/man3/read_allocate.3' /usr/bin/install -c -m 644 './man/man3/ExperimentFile.3' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/share/man/man3/ExperimentFile.3' /usr/bin/install -c -m 644 './man/man3/write_reading.3' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/share/man/man3/write_reading.3' /usr/bin/install -c -m 644 './man/man3/write_scf.3' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/share/man/man3/write_scf.3' /usr/bin/install -c -m 644 './man/man3/read_deallocate.3' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/share/man/man3/read_deallocate.3' /usr/bin/install -c -m 644 './man/man3/fwrite_reading.3' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/share/man/man3/fwrite_reading.3' /usr/bin/install -c -m 644 './man/man3/read2scf.3' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/share/man/man3/read2scf.3' /usr/bin/install -c -m 644 './man/man3/scf2read.3' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/share/man/man3/scf2read.3' /usr/bin/install -c -m 644 './man/man3/fwrite_scf.3' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/share/man/man3/fwrite_scf.3' /usr/bin/install -c -m 644 './man/man3/write_scf_header.3' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/share/man/man3/write_scf_header.3' /usr/bin/install -c -m 644 './man/man3/read_reading.3' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/share/man/man3/read_reading.3' /usr/bin/install -c -m 644 './man/man3/read_scf.3' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/share/man/man3/read_scf.3' /usr/bin/install -c -m 644 './man/man3/exp2read.3' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/share/man/man3/exp2read.3' /usr/bin/install -c -m 644 './man/man3/fread_reading.3' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/share/man/man3/fread_reading.3' /usr/bin/install -c -m 644 './man/man3/read2exp.3' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/share/man/man3/read2exp.3' /usr/bin/install -c -m 644 './man/man3/fread_scf.3' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/share/man/man3/fread_scf.3' test -z "/usr/share/man/man4" || mkdir -p -- "/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/share/man/man4" /usr/bin/install -c -m 644 './man/man4/Read.4' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/share/man/man4/Read.4' test -z "/usr/include/io_lib" || mkdir -p -- "/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/include/io_lib" /usr/bin/install -c -m 644 'io_lib/Read.h' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/include/io_lib/Read.h' /usr/bin/install -c -m 644 'io_lib/scf_extras.h' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/include/io_lib/scf_extras.h' /usr/bin/install -c -m 644 'io_lib/translate.h' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/include/io_lib/translate.h' /usr/bin/install -c -m 644 'io_lib/abi.h' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/include/io_lib/abi.h' /usr/bin/install -c -m 644 'io_lib/fpoint.h' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/include/io_lib/fpoint.h' /usr/bin/install -c -m 644 'io_lib/seqIOABI.h' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/include/io_lib/seqIOABI.h' /usr/bin/install -c -m 644 'io_lib/alf.h' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/include/io_lib/alf.h' /usr/bin/install -c -m 644 'io_lib/seqIOCTF.h' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/include/io_lib/seqIOCTF.h' /usr/bin/install -c -m 644 'io_lib/expFileIO.h' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/include/io_lib/expFileIO.h' /usr/bin/install -c -m 644 'io_lib/plain.h' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/include/io_lib/plain.h' /usr/bin/install -c -m 644 'io_lib/scf.h' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/include/io_lib/scf.h' /usr/bin/install -c -m 644 'io_lib/sff.h' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/include/io_lib/sff.h' /usr/bin/install -c -m 644 'io_lib/array.h' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/include/io_lib/array.h' /usr/bin/install -c -m 644 'io_lib/compress.h' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/include/io_lib/compress.h' /usr/bin/install -c -m 644 'io_lib/error.h' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/include/io_lib/error.h' /usr/bin/install -c -m 644 'io_lib/mach-io.h' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/include/io_lib/mach-io.h' /usr/bin/install -c -m 644 'io_lib/misc.h' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/include/io_lib/misc.h' /usr/bin/install -c -m 644 'io_lib/open_trace_file.h' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/include/io_lib/open_trace_file.h' /usr/bin/install -c -m 644 'io_lib/tar_format.h' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/include/io_lib/tar_format.h' /usr/bin/install -c -m 644 'io_lib/traceType.h' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/include/io_lib/traceType.h' /usr/bin/install -c -m 644 'io_lib/xalloc.h' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/include/io_lib/xalloc.h' /usr/bin/install -c -m 644 'io_lib/mFILE.h' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/include/io_lib/mFILE.h' /usr/bin/install -c -m 644 'io_lib/stdio_hack.h' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/include/io_lib/stdio_hack.h' /usr/bin/install -c -m 644 'io_lib/vlen.h' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/include/io_lib/vlen.h' /usr/bin/install -c -m 644 'io_lib/hash_table.h' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/include/io_lib/hash_table.h' /usr/bin/install -c -m 644 'io_lib/jenkins_lookup3.h' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/include/io_lib/jenkins_lookup3.h' /usr/bin/install -c -m 644 'io_lib/os.h' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/include/io_lib/os.h' /usr/bin/install -c -m 644 'io_lib/compression.h' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/include/io_lib/compression.h' /usr/bin/install -c -m 644 'io_lib/ztr.h' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/include/io_lib/ztr.h' /usr/bin/install -c -m 644 'io_lib/deflate_interlaced.h' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/include/io_lib/deflate_interlaced.h' /usr/bin/install -c -m 644 'io_lib/srf.h' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/include/io_lib/srf.h' /usr/bin/install -c -m 644 'io_lib/pooled_alloc.h' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/include/io_lib/pooled_alloc.h' /usr/bin/install -c -m 644 'io_lib_config.h' '/build/buildd/staden-io-lib-1.12.4/debian/tmp/usr/include/io_lib/io_lib_config.h' make[3]: Leaving directory `/build/buildd/staden-io-lib-1.12.4' make[2]: Leaving directory `/build/buildd/staden-io-lib-1.12.4' make[1]: Leaving directory `/build/buildd/staden-io-lib-1.12.4' debian/rules override_dh_install make[1]: Entering directory `/build/buildd/staden-io-lib-1.12.4' dh_install mkdir -p /build/buildd/staden-io-lib-1.12.4/debian/libstaden-read-dev/usr/bin mv /build/buildd/staden-io-lib-1.12.4/debian/staden-io-lib-utils/usr/bin/io_lib-config /build/buildd/staden-io-lib-1.12.4/debian/libstaden-read-dev/usr/bin make[1]: Leaving directory `/build/buildd/staden-io-lib-1.12.4' dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_installcatalogs -a dh_installcron -a dh_installdebconf -a dh_installemacsen -a dh_installifupdown -a dh_installinfo -a dh_installinit -a dh_installmenu -a dh_installmime -a dh_installmodules -a dh_installlogcheck -a dh_installlogrotate -a dh_installpam -a dh_installppp -a dh_installudev -a dh_installwm -a dh_installxfonts -a dh_installgsettings -a dh_bugfiles -a dh_ucf -a dh_lintian -a dh_gconf -a dh_icons -a dh_perl -a dh_usrlocal -a dh_link -a dh_compress -a dh_fixperms -a dh_strip -a dh_strip debug symbol extraction: all non-arch-all packages for this build platform amd64: staden-io-lib-utils libstaden-read-dev libstaden-read1 dh_strip debug symbol extraction: packages to act on: staden-io-lib-utils libstaden-read-dev libstaden-read1 dh_strip debug symbol extraction: ignored packages: dpkg-deb: building package `staden-io-lib-utils-dbgsym' in `../staden-io-lib-utils-dbgsym_1.12.4-1build1_amd64.ddeb'. libstaden-read-dev is already stripped, ignoring dpkg-deb: building package `libstaden-read1-dbgsym' in `../libstaden-read1-dbgsym_1.12.4-1build1_amd64.ddeb'. dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 109 pkgstriptranslations: processing staden-io-lib-utils (in debian/staden-io-lib-utils); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/staden-io-lib-utils/DEBIAN/control, package staden-io-lib-utils, directory debian/staden-io-lib-utils .. removing usr/share/doc/staden-io-lib-utils/CHANGES.gz Searching for duplicated docs in dependency libstaden-read1... symlinking changelog.Debian.gz in staden-io-lib-utils to file in libstaden-read1 dpkg-deb: warning: 'debian/staden-io-lib-utils/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `staden-io-lib-utils' in `../staden-io-lib-utils_1.12.4-1build1_amd64.deb'. INFO: pkgstriptranslations version 109 pkgstriptranslations: processing libstaden-read-dev (in debian/libstaden-read-dev); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libstaden-read-dev/DEBIAN/control, package libstaden-read-dev, directory debian/libstaden-read-dev Searching for duplicated docs in dependency libstaden-read1... symlinking changelog.Debian.gz in libstaden-read-dev to file in libstaden-read1 dpkg-deb: warning: 'debian/libstaden-read-dev/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `libstaden-read-dev' in `../libstaden-read-dev_1.12.4-1build1_amd64.deb'. INFO: pkgstriptranslations version 109 pkgstriptranslations: processing libstaden-read1 (in debian/libstaden-read1); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libstaden-read1/DEBIAN/control, package libstaden-read1, directory debian/libstaden-read1 dpkg-deb: warning: 'debian/libstaden-read1/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `libstaden-read1' in `../libstaden-read1_1.12.4-1build1_amd64.deb'. dpkg-genchanges -B -mUbuntu/amd64 Build Daemon >../staden-io-lib_1.12.4-1build1_amd64.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build staden-io-lib-1.12.4 dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20111203-1538 Publishing debug debs. chroot-autobuild/build/buildd/staden-io-lib-utils_1.12.4-1build1_amd64.deb: new debian package, version 2.0. size 119800 bytes: control archive= 1840 bytes. 991 bytes, 21 lines control 2217 bytes, 37 lines md5sums Package: staden-io-lib-utils Source: staden-io-lib Version: 1.12.4-1build1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 418 Depends: libc6 (>= 2.7), libstaden-read1 (>= 1.12.4) Section: science Priority: optional Homepage: http://staden.sourceforge.net/ Description: programs for maniuplating DNA sequencing files The io_lib from the Staden package is a library of file reading and writing code to provide a general purpose trace file (and Experiment File) reading interface. It has been compiled and tested on a variety of unix systems, MacOS X and MS Windows. . This package contains the programs that are distributed with the Staden io_lib for manipulating and converting sequencing data files, and in particular files to maniuplate short reads generated by second and third generation sequencers and stored in SRF format. chroot-autobuild/build/buildd/libstaden-read-dev_1.12.4-1build1_amd64.deb: new debian package, version 2.0. size 159252 bytes: control archive= 1967 bytes. 914 bytes, 21 lines control 2776 bytes, 43 lines md5sums Package: libstaden-read-dev Source: staden-io-lib Version: 1.12.4-1build1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 546 Depends: libstaden-read1 (= 1.12.4-1build1) Breaks: staden-io-lib-utils (<< 1.12.4-1~) Replaces: staden-io-lib-utils (<< 1.12.4-1~) Section: libdevel Priority: optional Homepage: http://staden.sourceforge.net/ Description: development files for libstaden-read This package contains the header and development files needed to build programs and packages using the Staden io_lib. . The io_lib from the Staden package is a library of file reading and writing code to provide a general purpose trace file (and Experiment File) reading interface. It has been compiled and tested on a variety of unix systems, MacOS X and MS Windows. chroot-autobuild/build/buildd/libstaden-read1_1.12.4-1build1_amd64.deb: new debian package, version 2.0. size 105048 bytes: control archive= 3011 bytes. 956 bytes, 20 lines control 224 bytes, 3 lines md5sums 135 bytes, 7 lines * postinst #!/bin/sh 132 bytes, 7 lines * postrm #!/bin/sh 33 bytes, 1 lines shlibs 10380 bytes, 385 lines symbols Package: libstaden-read1 Source: staden-io-lib Version: 1.12.4-1build1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 255 Depends: libc6 (>= 2.7), zlib1g (>= 1:1.1.4) Section: libs Priority: optional Homepage: http://staden.sourceforge.net/ Description: Staden library for reading and writing DNA sequencing results This package contains the Staden io_lib, that is renamed in Debian and Fedora ‘staden-read’ instead of ‘read’. This library supports various DNA sequence read formats, in particular SCF, ABI, ALF, CTF, ZTR, SFF and SRF. . The io_lib from the Staden package is a library of file reading and writing code to provide a general purpose trace file (and Experiment File) reading interface. It has been compiled and tested on a variety of unix systems, MacOS X and MS Windows. chroot-autobuild/build/buildd/staden-io-lib-utils_1.12.4-1build1_amd64.deb: drwxr-xr-x root/root 0 2011-12-03 15:38 ./ drwxr-xr-x root/root 0 2011-12-03 15:38 ./usr/ drwxr-xr-x root/root 0 2011-12-03 15:38 ./usr/share/ drwxr-xr-x root/root 0 2011-12-03 15:38 ./usr/share/doc-base/ -rw-r--r-- root/root 349 2011-12-03 15:37 ./usr/share/doc-base/staden-io-lib-ztr-format -rw-r--r-- root/root 304 2011-12-03 15:37 ./usr/share/doc-base/staden-io-lib-hash-file-format drwxr-xr-x root/root 0 2011-12-03 15:38 ./usr/share/doc/ drwxr-xr-x root/root 0 2011-12-03 15:38 ./usr/share/doc/staden-io-lib-utils/ -rw-r--r-- root/root 20980 2009-07-29 08:26 ./usr/share/doc/staden-io-lib-utils/ZTR_format.gz -rw-r--r-- root/root 2458 2010-07-07 09:28 ./usr/share/doc/staden-io-lib-utils/README.gz -rw-r--r-- root/root 3266 2009-07-29 08:26 ./usr/share/doc/staden-io-lib-utils/Hash_File_Format -rw-r--r-- root/root 3902 2011-12-03 15:37 ./usr/share/doc/staden-io-lib-utils/copyright drwxr-xr-x root/root 0 2011-12-03 15:38 ./usr/share/man/ drwxr-xr-x root/root 0 2011-12-03 15:38 ./usr/share/man/man1/ -rw-r--r-- root/root 1321 2011-12-03 15:38 ./usr/share/man/man1/srf2fastq.1.gz -rw-r--r-- root/root 804 2011-12-03 15:38 ./usr/share/man/man1/srf_list.1.gz -rw-r--r-- root/root 748 2011-12-03 15:38 ./usr/share/man/man1/srf_info.1.gz -rw-r--r-- root/root 572 2011-12-03 15:38 ./usr/share/man/man1/srf_index_hash.1.gz -rw-r--r-- root/root 358 2011-12-03 15:38 ./usr/share/man/man1/srf2fasta.1.gz drwxr-xr-x root/root 0 2011-12-03 15:38 ./usr/bin/ -rwxr-xr-x root/root 14584 2011-12-03 15:38 ./usr/bin/ztr_dump -rwxr-xr-x root/root 10440 2011-12-03 15:38 ./usr/bin/srf_extract_linear -rwxr-xr-x root/root 10344 2011-12-03 15:38 ./usr/bin/get_comment -rwxr-xr-x root/root 6232 2011-12-03 15:38 ./usr/bin/scf_update -rwxr-xr-x root/root 10472 2011-12-03 15:38 ./usr/bin/extract_seq -rwxr-xr-x root/root 18920 2011-12-03 15:38 ./usr/bin/srf_info -rwxr-xr-x root/root 18744 2011-12-03 15:38 ./usr/bin/srf2fastq -rwxr-xr-x root/root 14584 2011-12-03 15:38 ./usr/bin/extract_qual -rwxr-xr-x root/root 14544 2011-12-03 15:38 ./usr/bin/makeSCF -rwxr-xr-x root/root 10360 2011-12-03 15:38 ./usr/bin/srf_list -rwxr-xr-x root/root 10488 2011-12-03 15:38 ./usr/bin/hash_sff -rwxr-xr-x root/root 10384 2011-12-03 15:38 ./usr/bin/append_sff -rwxr-xr-x root/root 27176 2011-12-03 15:38 ./usr/bin/srf_filter -rwxr-xr-x root/root 10448 2011-12-03 15:38 ./usr/bin/srf_index_hash -rwxr-xr-x root/root 10312 2011-12-03 15:38 ./usr/bin/scf_dump -rwxr-xr-x root/root 10392 2011-12-03 15:38 ./usr/bin/index_tar -rwxr-xr-x root/root 18920 2011-12-03 15:38 ./usr/bin/convert_trace -rwxr-xr-x root/root 6208 2011-12-03 15:38 ./usr/bin/scf_info -rwxr-xr-x root/root 10432 2011-12-03 15:38 ./usr/bin/srf_extract_hash -rwxr-xr-x root/root 6216 2011-12-03 15:38 ./usr/bin/hash_list -rwxr-xr-x root/root 10368 2011-12-03 15:38 ./usr/bin/srf2fasta -rwxr-xr-x root/root 26976 2011-12-03 15:38 ./usr/bin/srf_dump_all -rwxr-xr-x root/root 10320 2011-12-03 15:38 ./usr/bin/trace_dump -rwxr-xr-x root/root 10360 2011-12-03 15:38 ./usr/bin/hash_extract -rwxr-xr-x root/root 10440 2011-12-03 15:38 ./usr/bin/extract_fastq -rwxr-xr-x root/root 14632 2011-12-03 15:38 ./usr/bin/hash_tar lrwxrwxrwx root/root 0 2011-12-03 15:38 ./usr/share/doc/staden-io-lib-utils/changelog.Debian.gz -> ../libstaden-read1/changelog.Debian.gz chroot-autobuild/build/buildd/libstaden-read-dev_1.12.4-1build1_amd64.deb: drwxr-xr-x root/root 0 2011-12-03 15:38 ./ drwxr-xr-x root/root 0 2011-12-03 15:38 ./usr/ drwxr-xr-x root/root 0 2011-12-03 15:38 ./usr/share/ drwxr-xr-x root/root 0 2011-12-03 15:38 ./usr/share/doc/ drwxr-xr-x root/root 0 2011-12-03 15:38 ./usr/share/doc/libstaden-read-dev/ -rw-r--r-- root/root 3902 2011-12-03 15:37 ./usr/share/doc/libstaden-read-dev/copyright drwxr-xr-x root/root 0 2011-12-03 15:38 ./usr/share/man/ drwxr-xr-x root/root 0 2011-12-03 15:38 ./usr/share/man/man4/ drwxr-xr-x root/root 0 2011-12-03 15:38 ./usr/share/man/man3/ -rw-r--r-- root/root 783 2011-12-03 15:38 ./usr/share/man/man3/scf2read.3.gz -rw-r--r-- root/root 1550 2011-12-03 15:38 ./usr/share/man/man3/read_reading.3.gz -rw-r--r-- root/root 608 2011-12-03 15:38 ./usr/share/man/man3/write_scf.3.gz -rw-r--r-- root/root 2119 2011-12-03 15:38 ./usr/share/man/man3/ExperimentFile.3.gz -rw-r--r-- root/root 610 2011-12-03 15:38 ./usr/share/man/man3/read_scf.3.gz -rw-r--r-- root/root 591 2011-12-03 15:38 ./usr/share/man/man3/read_allocate.3.gz -rw-r--r-- root/root 804 2011-12-03 15:38 ./usr/share/man/man3/write_reading.3.gz drwxr-xr-x root/root 0 2011-12-03 15:38 ./usr/include/ drwxr-xr-x root/root 0 2011-12-03 15:38 ./usr/include/io_lib/ -rw-r--r-- root/root 3280 2011-12-03 15:38 ./usr/include/io_lib/deflate_interlaced.h -rw-r--r-- root/root 5024 2011-12-03 15:38 ./usr/include/io_lib/seqIOABI.h -rw-r--r-- root/root 752 2011-12-03 15:38 ./usr/include/io_lib/error.h -rw-r--r-- root/root 11966 2011-12-03 15:38 ./usr/include/io_lib/compression.h -rw-r--r-- root/root 2880 2011-12-03 15:38 ./usr/include/io_lib/compress.h -rw-r--r-- root/root 7029 2011-12-03 15:38 ./usr/include/io_lib/Read.h -rw-r--r-- root/root 201 2011-12-03 15:38 ./usr/include/io_lib/vlen.h -rw-r--r-- root/root 1190 2011-12-03 15:38 ./usr/include/io_lib/open_trace_file.h -rw-r--r-- root/root 5339 2011-12-03 15:38 ./usr/include/io_lib/srf.h -rw-r--r-- root/root 4699 2011-12-03 15:38 ./usr/include/io_lib/ztr.h -rw-r--r-- root/root 714 2011-12-03 15:38 ./usr/include/io_lib/fpoint.h -rw-r--r-- root/root 5111 2011-12-03 15:38 ./usr/include/io_lib/hash_table.h -rw-r--r-- root/root 2121 2011-12-03 15:38 ./usr/include/io_lib/sff.h -rw-r--r-- root/root 793 2011-12-03 15:38 ./usr/include/io_lib/abi.h -rw-r--r-- root/root 1995 2011-12-03 15:38 ./usr/include/io_lib/traceType.h -rw-r--r-- root/root 10485 2011-12-03 15:38 ./usr/include/io_lib/scf.h -rw-r--r-- root/root 1374 2011-12-03 15:38 ./usr/include/io_lib/tar_format.h -rw-r--r-- root/root 836 2011-12-03 15:38 ./usr/include/io_lib/scf_extras.h -rw-r--r-- root/root 3071 2011-12-03 15:38 ./usr/include/io_lib/mach-io.h -rw-r--r-- root/root 859 2011-12-03 15:38 ./usr/include/io_lib/jenkins_lookup3.h -rw-r--r-- root/root 4851 2011-12-03 15:38 ./usr/include/io_lib/io_lib_config.h -rw-r--r-- root/root 3953 2011-12-03 15:38 ./usr/include/io_lib/translate.h -rw-r--r-- root/root 9351 2011-12-03 15:38 ./usr/include/io_lib/os.h -rw-r--r-- root/root 249 2011-12-03 15:38 ./usr/include/io_lib/seqIOCTF.h -rw-r--r-- root/root 815 2011-12-03 15:38 ./usr/include/io_lib/plain.h -rw-r--r-- root/root 2760 2011-12-03 15:38 ./usr/include/io_lib/misc.h -rw-r--r-- root/root 1858 2011-12-03 15:38 ./usr/include/io_lib/array.h -rw-r--r-- root/root 851 2011-12-03 15:38 ./usr/include/io_lib/xalloc.h -rw-r--r-- root/root 802 2011-12-03 15:38 ./usr/include/io_lib/alf.h -rw-r--r-- root/root 1739 2011-12-03 15:38 ./usr/include/io_lib/stdio_hack.h -rw-r--r-- root/root 517 2011-12-03 15:38 ./usr/include/io_lib/pooled_alloc.h -rw-r--r-- root/root 7215 2011-12-03 15:38 ./usr/include/io_lib/expFileIO.h -rw-r--r-- root/root 1375 2011-12-03 15:38 ./usr/include/io_lib/mFILE.h drwxr-xr-x root/root 0 2011-12-03 15:38 ./usr/bin/ -rwxr-xr-x root/root 882 2011-12-03 15:38 ./usr/bin/io_lib-config drwxr-xr-x root/root 0 2011-12-03 15:38 ./usr/lib/ -rw-r--r-- root/root 386136 2011-12-03 15:38 ./usr/lib/libstaden-read.a lrwxrwxrwx root/root 0 2011-12-03 15:38 ./usr/share/doc/libstaden-read-dev/changelog.Debian.gz -> ../libstaden-read1/changelog.Debian.gz lrwxrwxrwx root/root 0 2011-12-03 15:38 ./usr/share/man/man4/Read.4.gz -> ../man3/read_reading.3.gz lrwxrwxrwx root/root 0 2011-12-03 15:38 ./usr/share/man/man3/read_scf_header.3.gz -> read_scf.3.gz lrwxrwxrwx root/root 0 2011-12-03 15:38 ./usr/share/man/man3/fwrite_scf.3.gz -> write_scf.3.gz lrwxrwxrwx root/root 0 2011-12-03 15:38 ./usr/share/man/man3/fread_reading.3.gz -> read_reading.3.gz lrwxrwxrwx root/root 0 2011-12-03 15:38 ./usr/share/man/man3/fwrite_reading.3.gz -> write_reading.3.gz lrwxrwxrwx root/root 0 2011-12-03 15:38 ./usr/share/man/man3/fread_scf.3.gz -> read_scf.3.gz lrwxrwxrwx root/root 0 2011-12-03 15:38 ./usr/share/man/man3/write_scf_header.3.gz -> write_scf.3.gz lrwxrwxrwx root/root 0 2011-12-03 15:38 ./usr/share/man/man3/read2scf.3.gz -> scf2read.3.gz lrwxrwxrwx root/root 0 2011-12-03 15:38 ./usr/share/man/man3/read2exp.3.gz -> scf2read.3.gz lrwxrwxrwx root/root 0 2011-12-03 15:38 ./usr/share/man/man3/exp2read.3.gz -> scf2read.3.gz lrwxrwxrwx root/root 0 2011-12-03 15:38 ./usr/share/man/man3/read_deallocate.3.gz -> read_allocate.3.gz lrwxrwxrwx root/root 0 2011-12-03 15:38 ./usr/lib/libstaden-read.so -> libstaden-read.so.1.1.2 chroot-autobuild/build/buildd/libstaden-read1_1.12.4-1build1_amd64.deb: drwxr-xr-x root/root 0 2011-12-03 15:38 ./ drwxr-xr-x root/root 0 2011-12-03 15:38 ./usr/ drwxr-xr-x root/root 0 2011-12-03 15:38 ./usr/share/ drwxr-xr-x root/root 0 2011-12-03 15:38 ./usr/share/doc/ drwxr-xr-x root/root 0 2011-12-03 15:38 ./usr/share/doc/libstaden-read1/ -rw-r--r-- root/root 3902 2011-12-03 15:37 ./usr/share/doc/libstaden-read1/copyright -rw-r--r-- root/root 764 2011-12-03 15:37 ./usr/share/doc/libstaden-read1/changelog.Debian.gz drwxr-xr-x root/root 0 2011-12-03 15:38 ./usr/lib/ -rw-r--r-- root/root 216328 2011-12-03 15:38 ./usr/lib/libstaden-read.so.1.1.2 lrwxrwxrwx root/root 0 2011-12-03 15:38 ./usr/lib/libstaden-read.so.1 -> libstaden-read.so.1.1.2 staden-io-lib_1.12.4-1build1_amd64.changes: Format: 1.8 Date: Fri, 02 Dec 2011 21:24:13 -0700 Source: staden-io-lib Binary: staden-io-lib-utils libstaden-read-dev libstaden-read1 Architecture: amd64 Version: 1.12.4-1build1 Distribution: precise Urgency: low Maintainer: Ubuntu/amd64 Build Daemon Changed-By: Adam Conrad Description: libstaden-read-dev - development files for libstaden-read libstaden-read1 - Staden library for reading and writing DNA sequencing results staden-io-lib-utils - programs for maniuplating DNA sequencing files Changes: staden-io-lib (1.12.4-1build1) precise; urgency=low . * No-change rebuild to drop spurious libsfgcc1 dependency on armhf. Checksums-Sha1: 70bf068c90f586d8d63f2730e5222999250acb7a 119800 staden-io-lib-utils_1.12.4-1build1_amd64.deb a183bef933f68ceb2de33f1366cc61d252135b39 159252 libstaden-read-dev_1.12.4-1build1_amd64.deb 87eaa3cf930f4f27ffe94d3dfa406136b41b8423 105048 libstaden-read1_1.12.4-1build1_amd64.deb Checksums-Sha256: b47d30c84af58078fc6080ef9f11a2318518cd82ac549d367794b8b2a8195348 119800 staden-io-lib-utils_1.12.4-1build1_amd64.deb 723ada1d1d0b3af49edaa5e19d25d47fdeb62ec814bfc30060cf53604e2f3e24 159252 libstaden-read-dev_1.12.4-1build1_amd64.deb e6a7cb9a6eb822b7d6051e93f6fc6198cb13b086dd24882708657a65333a71c2 105048 libstaden-read1_1.12.4-1build1_amd64.deb Files: 2dedc437ae004d740fa1c76d5a107d94 119800 science optional staden-io-lib-utils_1.12.4-1build1_amd64.deb 5fc2e71c1b94d0acb981c2dae4e0e255 159252 libdevel optional libstaden-read-dev_1.12.4-1build1_amd64.deb 4909e7258488733661c7cf6bf3220bff 105048 libs optional libstaden-read1_1.12.4-1build1_amd64.deb ****************************************************************************** Built successfully Purging chroot-autobuild/build/buildd/staden-io-lib-1.12.4 ------------------------------------------------------------------------------ /usr/bin/sudo dpkg --purge intltool-debian groff-base gettext file zlib1g-dev html2text gettext-base debhelper autotools-dev po-debconf libunistring0 libcroco3 libmagic1 libpipeline1 libxml2 bsdmainutils libgettextpo0 man-db (Reading database ... 15436 files and directories currently installed.) Removing zlib1g-dev ... Removing debhelper ... Removing autotools-dev ... Removing po-debconf ... Removing man-db ... Purging configuration files for man-db ... Removing catpages as well as /var/cache/man hierarchy. Removing intltool-debian ... Removing groff-base ... Purging configuration files for groff-base ... Removing gettext ... Removing file ... Removing html2text ... Purging configuration files for html2text ... Removing gettext-base ... Removing libmagic1 ... Purging configuration files for libmagic1 ... Removing libpipeline1 ... Purging configuration files for libpipeline1 ... Removing bsdmainutils ... Purging configuration files for bsdmainutils ... Removing libgettextpo0 ... Removing libunistring0 ... Purging configuration files for libunistring0 ... Removing libcroco3 ... Purging configuration files for libcroco3 ... Removing libxml2 ... Purging configuration files for libxml2 ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place ****************************************************************************** Finished at 20111203-1538 Build needed 00:00:38, 17476k disk space Can't open average time db /var/debbuild/avg-build-times Can't open average space db /var/debbuild/avg-build-space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', '3905ee707401e2eb7c7ef73fe1321fa6d724f963'] Scanning for processes to kill in build /home/buildd/build-3905ee707401e2eb7c7ef73fe1321fa6d724f963/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', '3905ee707401e2eb7c7ef73fe1321fa6d724f963'] Unmounting chroot for build 3905ee707401e2eb7c7ef73fe1321fa6d724f963... none /home/buildd/build-3905ee707401e2eb7c7ef73fe1321fa6d724f963/chroot-autobuild/proc proc rw,relatime 0 0 none /home/buildd/build-3905ee707401e2eb7c7ef73fe1321fa6d724f963/chroot-autobuild/dev/pts devpts rw,relatime 0 0 none /home/buildd/build-3905ee707401e2eb7c7ef73fe1321fa6d724f963/chroot-autobuild/sys sysfs rw,relatime 0 0 none /home/buildd/build-3905ee707401e2eb7c7ef73fe1321fa6d724f963/chroot-autobuild/dev/shm tmpfs rw,relatime 0 0 RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', '3905ee707401e2eb7c7ef73fe1321fa6d724f963'] Removing build 3905ee707401e2eb7c7ef73fe1321fa6d724f963