https://launchpad.net/ubuntu/+source/stacks/2.66+dfsg-1build2/+build/28012738 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos03-riscv64-118 6.5.0-26-generic #26.1~22.04.1-Ubuntu SMP Thu Mar 14 04:00:07 UTC 2024 riscv64 Buildd toolchain package versions: launchpad-buildd_236~650~ubuntu22.04.1 python3-lpbuildd_236~650~ubuntu22.04.1 sbuild_0.81.2ubuntu6 git-build-recipe_0.3.6 git_1:2.34.1-1ubuntu1.10 dpkg-dev_1.21.1ubuntu2.3 python3-debian_0.1.43ubuntu1.1. Syncing the system clock with the buildd NTP service... 2 Apr 12:19:29 ntpdate[2297]: adjust time server 10.211.37.1 offset -0.000432 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=noble --arch=riscv64 PACKAGEBUILD-28012738 --image-type chroot /home/buildd/filecache-default/20a3246b7a16d5658607d7f37229fcda30a33651 Creating target for build PACKAGEBUILD-28012738 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=noble --arch=riscv64 PACKAGEBUILD-28012738 Starting target for build PACKAGEBUILD-28012738 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=noble --arch=riscv64 PACKAGEBUILD-28012738 'deb http://ftpmaster.internal/ubuntu noble main universe' 'deb http://ftpmaster.internal/ubuntu noble-security main universe' 'deb http://ftpmaster.internal/ubuntu noble-updates main universe' 'deb http://ftpmaster.internal/ubuntu noble-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-28012738 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=noble --arch=riscv64 PACKAGEBUILD-28012738 Updating target for build PACKAGEBUILD-28012738 Get:1 http://ftpmaster.internal/ubuntu noble InRelease [255 kB] Get:2 http://ftpmaster.internal/ubuntu noble-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu noble-updates InRelease [89.7 kB] Get:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] Get:5 http://ftpmaster.internal/ubuntu noble/main riscv64 Packages [1351 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main Translation-en [512 kB] Get:7 http://ftpmaster.internal/ubuntu noble/universe riscv64 Packages [15.0 MB] Get:8 http://ftpmaster.internal/ubuntu noble/universe Translation-en [6114 kB] Get:9 http://ftpmaster.internal/ubuntu noble-updates/main riscv64 Packages [667 kB] Get:10 http://ftpmaster.internal/ubuntu noble-updates/main Translation-en [242 kB] Get:11 http://ftpmaster.internal/ubuntu noble-updates/universe riscv64 Packages [4442 kB] Get:12 http://ftpmaster.internal/ubuntu noble-updates/universe Translation-en [1693 kB] Get:13 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 Packages [677 kB] Get:14 http://ftpmaster.internal/ubuntu noble-proposed/main Translation-en [247 kB] Get:15 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 Packages [3131 kB] Get:16 http://ftpmaster.internal/ubuntu noble-proposed/universe Translation-en [1756 kB] Fetched 36.4 MB in 45s (801 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libnsl-dev libperl5.36 libtirpc-dev libunistring2 perl-modules-5.36 Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: libapt-pkg6.0* libdb5.3* libext2fs2* libgdbm-compat4* libgdbm6* libgnutls30* libhogweed6* libnettle8* libnpth0* libpng16-16* libreadline8* libssl3* libtirpc3* usrmerge* The following NEW packages will be installed: cpp-13-riscv64-linux-gnu cpp-riscv64-linux-gnu g++-13-riscv64-linux-gnu g++-riscv64-linux-gnu gcc-13-riscv64-linux-gnu gcc-14-base gcc-riscv64-linux-gnu libapt-pkg6.0t64 libdb5.3t64 libext2fs2t64 libgdbm-compat4t64 libgdbm6t64 libgnutls30t64 libhogweed6t64 libnettle8t64 libnpth0t64 libperl5.38t64 libpng16-16t64 libreadline8t64 libssl3t64 libtirpc3t64 libubsan1 libunistring5 perl-modules-5.38 The following packages will be upgraded: apt apt-utils base-files base-passwd bash bash-completion binutils binutils-common binutils-riscv64-linux-gnu bsdextrautils bsdutils bzip2 ca-certificates coreutils cpp cpp-13 dash debconf debconf-i18n debianutils diffutils dpkg dpkg-dev e2fsprogs fakeroot g++ g++-13 gcc gcc-13 gcc-13-base gpg gpg-agent gpgconf gpgv grep gzip hostname init init-system-helpers krb5-locales libacl1 libapparmor1 libargon2-1 libasan8 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libfakeroot libfdisk1 libffi8 libgcc-13-dev libgcc-s1 libgcrypt20 libgomp1 libgpg-error-l10n libgpg-error0 libgpm2 libgssapi-krb5-2 libidn2-0 libip4tc2 libjansson4 libk5crypto3 libkeyutils1 libkmod2 libkrb5-3 libkrb5support0 liblocale-gettext-perl liblzma5 libmd0 libmount1 libncursesw6 libnsl-dev libnsl2 libnss-nisplus libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libproc2-0 libseccomp2 libselinux1 libsemanage-common libsemanage2 libsepol2 libsframe1 libsmartcols1 libsqlite3-0 libss2 libstdc++-13-dev libstdc++6 libsystemd-shared libsystemd0 libtext-charwidth-perl libtext-iconv-perl libtinfo6 libtirpc-common libtirpc-dev libudev1 libuuid1 libxxhash0 libzstd1 linux-libc-dev login logsave lto-disabled-list mawk mount ncurses-base ncurses-bin openssl optipng passwd perl perl-base pinentry-curses procps psmisc readline-common sed sensible-utils systemd systemd-dev systemd-sysv sysvinit-utils tar tzdata ubuntu-keyring util-linux uuid-runtime xz-utils zlib1g 153 upgraded, 24 newly installed, 14 to remove and 0 not upgraded. Need to get 113 MB of archives. After this operation, 70.1 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libnsl-dev riscv64 1.3.0-3build3 [137 kB] Get:2 http://ftpmaster.internal/ubuntu noble/main riscv64 libcrypt-dev riscv64 1:4.4.36-4 [322 kB] Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libc6-dev riscv64 2.39-0ubuntu8 [3458 kB] Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libc-dev-bin riscv64 2.39-0ubuntu8 [20.0 kB] Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libtirpc-common all 1.3.4+ds-1.1build1 [8094 B] Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libtirpc-dev riscv64 1.3.4+ds-1.1build1 [350 kB] Get:7 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 libnss-nisplus riscv64 1.3-5build1 [23.8 kB] Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libtirpc3t64 riscv64 1.3.4+ds-1.1build1 [92.3 kB] Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libgssapi-krb5-2 riscv64 1.20.1-6ubuntu2 [153 kB] Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libkrb5-3 riscv64 1.20.1-6ubuntu2 [385 kB] Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libk5crypto3 riscv64 1.20.1-6ubuntu2 [108 kB] Get:12 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libkrb5support0 riscv64 1.20.1-6ubuntu2 [36.7 kB] Get:13 http://ftpmaster.internal/ubuntu noble/main riscv64 libacl1 riscv64 2.3.2-1 [18.7 kB] Get:14 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libapparmor1 riscv64 4.0.0-beta3-0ubuntu3 [51.2 kB] Get:15 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libaudit-common all 1:3.1.2-2.1build1 [5736 B] Get:16 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libcap-ng0 riscv64 0.8.4-2build2 [15.5 kB] Get:17 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libaudit1 riscv64 1:3.1.2-2.1build1 [47.9 kB] Get:18 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libblkid1 riscv64 2.39.3-9ubuntu4 [204 kB] Get:19 http://ftpmaster.internal/ubuntu noble/main riscv64 libcap2 riscv64 1:2.66-5ubuntu1 [31.7 kB] Get:20 http://ftpmaster.internal/ubuntu noble/main riscv64 libcrypt1 riscv64 1:4.4.36-4 [115 kB] Get:21 http://ftpmaster.internal/ubuntu noble/main riscv64 libgpg-error-l10n all 1.47-3build1 [8024 B] Get:22 http://ftpmaster.internal/ubuntu noble/main riscv64 libgpg-error0 riscv64 1.47-3build1 [75.7 kB] Get:23 http://ftpmaster.internal/ubuntu noble/main riscv64 libgcrypt20 riscv64 1.10.3-2 [564 kB] Get:24 http://ftpmaster.internal/ubuntu noble/main riscv64 liblzma5 riscv64 5.6.1+really5.4.5-1 [130 kB] Get:25 http://ftpmaster.internal/ubuntu noble/main riscv64 libzstd1 riscv64 1.5.5+dfsg2-2 [349 kB] Get:26 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libkmod2 riscv64 31+20240202-2ubuntu5 [55.0 kB] Get:27 http://ftpmaster.internal/ubuntu noble/main riscv64 libpcre2-8-0 riscv64 10.42-4ubuntu1 [149 kB] Get:28 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libselinux1 riscv64 3.5-2ubuntu2 [86.1 kB] Get:29 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libmount1 riscv64 2.39.3-9ubuntu4 [212 kB] Get:30 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libtext-iconv-perl riscv64 1.7-8build3 [13.5 kB] Get:31 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libtext-charwidth-perl riscv64 0.04-11build3 [9272 B] Get:32 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 perl-modules-5.38 all 5.38.2-3.2build1 [3110 kB] Get:33 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libdb5.3t64 riscv64 5.3.28+dfsg2-6build1 [779 kB] Get:34 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libgdbm6t64 riscv64 1.23-5.1build1 [35.9 kB] Get:35 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libgdbm-compat4t64 riscv64 1.23-5.1build1 [6884 B] Get:36 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libperl5.38t64 riscv64 5.38.2-3.2build1 [4467 kB] Get:37 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 perl riscv64 5.38.2-3.2build1 [231 kB] Get:38 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 perl-base riscv64 5.38.2-3.2build1 [1833 kB] Get:39 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 liblocale-gettext-perl riscv64 1.07-6ubuntu5 [15.7 kB] Get:40 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 openssl riscv64 3.0.13-0ubuntu3 [992 kB] Get:41 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libsystemd-shared riscv64 255.4-1ubuntu6 [2180 kB] Get:42 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libcryptsetup12 riscv64 2:2.7.0-1ubuntu3 [274 kB] Get:43 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libssl3t64 riscv64 3.0.13-0ubuntu3 [1735 kB] Get:44 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 systemd-dev all 255.4-1ubuntu6 [104 kB] Get:45 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 systemd-sysv riscv64 255.4-1ubuntu6 [11.9 kB] Get:46 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 systemd riscv64 255.4-1ubuntu6 [3552 kB] Get:47 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libsystemd0 riscv64 255.4-1ubuntu6 [458 kB] Get:48 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libpam-modules-bin riscv64 1.5.3-5ubuntu4 [55.1 kB] Get:49 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libpam-modules riscv64 1.5.3-5ubuntu4 [284 kB] Get:50 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libnettle8t64 riscv64 3.9.1-2.2build1 [217 kB] Get:51 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libhogweed6t64 riscv64 3.9.1-2.2build1 [200 kB] Get:52 http://ftpmaster.internal/ubuntu noble/main riscv64 libp11-kit0 riscv64 0.25.3-4ubuntu1 [318 kB] Get:53 http://ftpmaster.internal/ubuntu noble/main riscv64 libunistring5 riscv64 1.1-2 [544 kB] Get:54 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libgnutls30t64 riscv64 3.8.3-1.1ubuntu3 [1012 kB] Get:55 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libapt-pkg6.0t64 riscv64 2.7.14build2 [1050 kB] Get:56 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 bzip2 riscv64 1.0.8-5.1 [35.0 kB] Get:57 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libbz2-1.0 riscv64 1.0.8-5.1 [40.2 kB] Get:58 http://ftpmaster.internal/ubuntu noble/main riscv64 gcc-14-base riscv64 14-20240315-1ubuntu1 [47.0 kB] Get:59 http://ftpmaster.internal/ubuntu noble/main riscv64 libgcc-s1 riscv64 14-20240315-1ubuntu1 [61.1 kB] Get:60 http://ftpmaster.internal/ubuntu noble/main riscv64 libstdc++6 riscv64 14-20240315-1ubuntu1 [807 kB] Get:61 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libudev1 riscv64 255.4-1ubuntu6 [181 kB] Get:62 http://ftpmaster.internal/ubuntu noble/main riscv64 libxxhash0 riscv64 0.8.2-2 [43.7 kB] Get:63 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 zlib1g riscv64 1:1.3.dfsg-3.1ubuntu2 [60.8 kB] Get:64 http://ftpmaster.internal/ubuntu noble/main riscv64 libffi8 riscv64 3.4.6-1 [23.0 kB] Get:65 http://ftpmaster.internal/ubuntu noble/main riscv64 libidn2-0 riscv64 2.3.7-2 [102 kB] Get:66 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libdebconfclient0 riscv64 0.271ubuntu3 [11.2 kB] Get:67 http://ftpmaster.internal/ubuntu noble/main riscv64 base-passwd riscv64 3.6.3 [52.1 kB] Get:68 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libsqlite3-0 riscv64 3.45.1-1ubuntu2 [739 kB] Get:69 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 gpg riscv64 2.4.4-2ubuntu16 [607 kB] Get:70 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libreadline8t64 riscv64 8.2-4build1 [156 kB] Get:71 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 readline-common all 8.2-4build1 [56.5 kB] Get:72 http://ftpmaster.internal/ubuntu noble/main riscv64 libncursesw6 riscv64 6.4+20240113-1ubuntu1 [155 kB] Get:73 http://ftpmaster.internal/ubuntu noble/main riscv64 libtinfo6 riscv64 6.4+20240113-1ubuntu1 [108 kB] Get:74 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 gpg-agent riscv64 2.4.4-2ubuntu16 [282 kB] Get:75 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 gpgconf riscv64 2.4.4-2ubuntu16 [133 kB] Get:76 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 pinentry-curses riscv64 1.2.1-3ubuntu5 [40.6 kB] Get:77 http://ftpmaster.internal/ubuntu noble/main riscv64 init-system-helpers all 1.66ubuntu1 [39.4 kB] Get:78 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libnpth0t64 riscv64 1.6-3.1build1 [8144 B] Get:79 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 gpgv riscv64 2.4.4-2ubuntu16 [276 kB] Get:80 http://ftpmaster.internal/ubuntu noble/main riscv64 ubuntu-keyring all 2023.11.28.1 [11.1 kB] Get:81 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 apt-utils riscv64 2.7.14build2 [226 kB] Get:82 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 apt riscv64 2.7.14build2 [1349 kB] Get:83 http://ftpmaster.internal/ubuntu noble/main riscv64 debconf-i18n all 1.5.86 [205 kB] Get:84 http://ftpmaster.internal/ubuntu noble/main riscv64 debconf all 1.5.86 [124 kB] Get:85 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libpam0g riscv64 1.5.3-5ubuntu4 [69.0 kB] Get:86 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libseccomp2 riscv64 2.5.5-1ubuntu3 [52.9 kB] Get:87 http://ftpmaster.internal/ubuntu noble/main riscv64 libargon2-1 riscv64 0~20190702+dfsg-4 [23.7 kB] Get:88 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libdevmapper1.02.1 riscv64 2:1.02.185-3ubuntu3 [145 kB] Get:89 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libuuid1 riscv64 2.39.3-9ubuntu4 [37.6 kB] Get:90 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libfdisk1 riscv64 2.39.3-9ubuntu4 [238 kB] Get:91 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 mount riscv64 2.39.3-9ubuntu4 [152 kB] Get:92 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libcom-err2 riscv64 1.47.0-2.4~exp1ubuntu3 [22.5 kB] Get:93 http://ftpmaster.internal/ubuntu noble/main riscv64 libkeyutils1 riscv64 1.6.3-3 [9694 B] Get:94 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libnsl2 riscv64 1.3.0-3build3 [43.3 kB] Get:95 http://ftpmaster.internal/ubuntu noble/main riscv64 linux-libc-dev riscv64 6.8.0-20.20 [1567 kB] Get:96 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libc6 riscv64 2.39-0ubuntu8 [2776 kB] Get:97 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libc-bin riscv64 2.39-0ubuntu8 [609 kB] Get:98 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 base-files riscv64 13ubuntu9 [73.6 kB] Get:99 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 debianutils riscv64 5.17build1 [89.8 kB] Get:100 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 bash riscv64 5.2.21-2ubuntu4 [745 kB] Get:101 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 bsdutils riscv64 1:2.39.3-9ubuntu4 [115 kB] Get:102 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 coreutils riscv64 9.4-3ubuntu5 [1458 kB] Get:103 http://ftpmaster.internal/ubuntu noble/main riscv64 tar riscv64 1.35+dfsg-3 [269 kB] Get:104 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 dpkg riscv64 1.22.6ubuntu6 [1285 kB] Get:105 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 dash riscv64 0.5.12-6ubuntu5 [93.2 kB] Get:106 http://ftpmaster.internal/ubuntu noble/main riscv64 diffutils riscv64 1:3.10-1 [180 kB] Get:107 http://ftpmaster.internal/ubuntu noble/main riscv64 grep riscv64 3.11-4 [182 kB] Get:108 http://ftpmaster.internal/ubuntu noble/main riscv64 gzip riscv64 1.12-1ubuntu2 [102 kB] Get:109 http://ftpmaster.internal/ubuntu noble/main riscv64 hostname riscv64 3.23+nmu2ubuntu1 [11.3 kB] Get:110 http://ftpmaster.internal/ubuntu noble/main riscv64 login riscv64 1:4.13+dfsg1-4ubuntu1 [203 kB] Get:111 http://ftpmaster.internal/ubuntu noble/main riscv64 ncurses-bin riscv64 6.4+20240113-1ubuntu1 [186 kB] Get:112 http://ftpmaster.internal/ubuntu noble/main riscv64 sed riscv64 4.9-2 [211 kB] Get:113 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 util-linux riscv64 2.39.3-9ubuntu4 [1330 kB] Get:114 http://ftpmaster.internal/ubuntu noble/main riscv64 ncurses-base all 6.4+20240113-1ubuntu1 [25.4 kB] Get:115 http://ftpmaster.internal/ubuntu noble/main riscv64 sysvinit-utils riscv64 3.08-6ubuntu2 [35.0 kB] Get:116 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 logsave riscv64 1.47.0-2.4~exp1ubuntu3 [22.2 kB] Get:117 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libext2fs2t64 riscv64 1.47.0-2.4~exp1ubuntu3 [243 kB] Get:118 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 e2fsprogs riscv64 1.47.0-2.4~exp1ubuntu3 [604 kB] Get:119 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 optipng riscv64 0.7.8+ds-1build2 [115 kB] Get:120 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libpng16-16t64 riscv64 1.6.43-5build1 [193 kB] Get:121 http://ftpmaster.internal/ubuntu noble/main riscv64 init riscv64 1.66ubuntu1 [6190 B] Get:122 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libsmartcols1 riscv64 2.39.3-9ubuntu4 [146 kB] Get:123 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 uuid-runtime riscv64 2.39.3-9ubuntu4 [49.2 kB] Get:124 http://ftpmaster.internal/ubuntu noble/main riscv64 libattr1 riscv64 1:2.5.2-1 [11.5 kB] Get:125 http://ftpmaster.internal/ubuntu noble/main riscv64 libmd0 riscv64 1.1.0-2 [30.6 kB] Get:126 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libpam-runtime all 1.5.3-5ubuntu4 [40.8 kB] Get:127 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libsemanage-common all 3.5-1build5 [10.1 kB] Get:128 http://ftpmaster.internal/ubuntu noble/main riscv64 libsepol2 riscv64 3.5-2 [312 kB] Get:129 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libsemanage2 riscv64 3.5-1build5 [101 kB] Get:130 http://ftpmaster.internal/ubuntu noble/main riscv64 passwd riscv64 1:4.13+dfsg1-4ubuntu1 [864 kB] Get:131 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libproc2-0 riscv64 2:4.0.4-4ubuntu3 [60.9 kB] Get:132 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libss2 riscv64 1.47.0-2.4~exp1ubuntu3 [17.1 kB] Get:133 http://ftpmaster.internal/ubuntu noble/main riscv64 mawk riscv64 1.3.4.20240123-1 [129 kB] Get:134 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 procps riscv64 2:4.0.4-4ubuntu3 [715 kB] Get:135 http://ftpmaster.internal/ubuntu noble/main riscv64 sensible-utils all 0.0.22 [22.5 kB] Get:136 http://ftpmaster.internal/ubuntu noble/main riscv64 ca-certificates all 20240203 [159 kB] Get:137 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 krb5-locales all 1.20.1-6ubuntu2 [13.8 kB] Get:138 http://ftpmaster.internal/ubuntu noble/main riscv64 tzdata all 2024a-1ubuntu1 [273 kB] Get:139 http://ftpmaster.internal/ubuntu noble/main riscv64 bash-completion all 1:2.11-8 [180 kB] Get:140 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 bsdextrautils riscv64 2.39.3-9ubuntu4 [92.1 kB] Get:141 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libgpm2 riscv64 1.20.7-11 [15.0 kB] Get:142 http://ftpmaster.internal/ubuntu noble/main riscv64 libip4tc2 riscv64 1.8.10-3ubuntu1 [23.9 kB] Get:143 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libjansson4 riscv64 2.14-2build2 [34.7 kB] Get:144 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 psmisc riscv64 23.7-1build1 [177 kB] Get:145 http://ftpmaster.internal/ubuntu noble/main riscv64 xz-utils riscv64 5.6.1+really5.4.5-1 [269 kB] Get:146 http://ftpmaster.internal/ubuntu noble/main riscv64 libctf0 riscv64 2.42-4ubuntu2 [104 kB] Get:147 http://ftpmaster.internal/ubuntu noble/main riscv64 libctf-nobfd0 riscv64 2.42-4ubuntu2 [106 kB] Get:148 http://ftpmaster.internal/ubuntu noble/main riscv64 binutils-riscv64-linux-gnu riscv64 2.42-4ubuntu2 [899 kB] Get:149 http://ftpmaster.internal/ubuntu noble/main riscv64 libbinutils riscv64 2.42-4ubuntu2 [566 kB] Get:150 http://ftpmaster.internal/ubuntu noble/main riscv64 binutils riscv64 2.42-4ubuntu2 [2984 B] Get:151 http://ftpmaster.internal/ubuntu noble/main riscv64 binutils-common riscv64 2.42-4ubuntu2 [209 kB] Get:152 http://ftpmaster.internal/ubuntu noble/main riscv64 libsframe1 riscv64 2.42-4ubuntu2 [15.7 kB] Get:153 http://ftpmaster.internal/ubuntu noble/main riscv64 libgomp1 riscv64 14-20240315-1ubuntu1 [145 kB] Get:154 http://ftpmaster.internal/ubuntu noble/main riscv64 libatomic1 riscv64 14-20240315-1ubuntu1 [9496 B] Get:155 http://ftpmaster.internal/ubuntu noble/main riscv64 libasan8 riscv64 14-20240315-1ubuntu1 [2621 kB] Get:156 http://ftpmaster.internal/ubuntu noble/main riscv64 libubsan1 riscv64 14-20240315-1ubuntu1 [1075 kB] Get:157 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 g++-13 riscv64 13.2.0-23ubuntu3 [14.5 kB] Get:158 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 gcc-13 riscv64 13.2.0-23ubuntu3 [450 kB] Get:159 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libstdc++-13-dev riscv64 13.2.0-23ubuntu3 [5666 kB] Get:160 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libgcc-13-dev riscv64 13.2.0-23ubuntu3 [3858 kB] Get:161 http://ftpmaster.internal/ubuntu noble/main riscv64 libcc1-0 riscv64 14-20240315-1ubuntu1 [45.2 kB] Get:162 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 cpp-13 riscv64 13.2.0-23ubuntu3 [1030 B] Get:163 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 gcc-13-base riscv64 13.2.0-23ubuntu3 [48.7 kB] Get:164 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 gcc-13-riscv64-linux-gnu riscv64 13.2.0-23ubuntu3 [19.7 MB] Get:165 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 g++-13-riscv64-linux-gnu riscv64 13.2.0-23ubuntu3 [11.6 MB] Get:166 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 cpp-13-riscv64-linux-gnu riscv64 13.2.0-23ubuntu3 [10.3 MB] Get:167 http://ftpmaster.internal/ubuntu noble/main riscv64 g++ riscv64 4:13.2.0-7ubuntu1 [1082 B] Get:168 http://ftpmaster.internal/ubuntu noble/main riscv64 gcc riscv64 4:13.2.0-7ubuntu1 [5016 B] Get:169 http://ftpmaster.internal/ubuntu noble/main riscv64 cpp riscv64 4:13.2.0-7ubuntu1 [22.4 kB] Get:170 http://ftpmaster.internal/ubuntu noble/main riscv64 cpp-riscv64-linux-gnu riscv64 4:13.2.0-7ubuntu1 [5316 B] Get:171 http://ftpmaster.internal/ubuntu noble/main riscv64 gcc-riscv64-linux-gnu riscv64 4:13.2.0-7ubuntu1 [1202 B] Get:172 http://ftpmaster.internal/ubuntu noble/main riscv64 g++-riscv64-linux-gnu riscv64 4:13.2.0-7ubuntu1 [960 B] Get:173 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 dpkg-dev all 1.22.6ubuntu6 [1074 kB] Get:174 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libdpkg-perl all 1.22.6ubuntu6 [268 kB] Get:175 http://ftpmaster.internal/ubuntu noble/main riscv64 lto-disabled-list all 47 [12.4 kB] Get:176 http://ftpmaster.internal/ubuntu noble/main riscv64 libfakeroot riscv64 1.33-1 [34.6 kB] Get:177 http://ftpmaster.internal/ubuntu noble/main riscv64 fakeroot riscv64 1.33-1 [78.4 kB] Preconfiguring packages ... Fetched 113 MB in 18s (6348 kB/s) (Reading database ... 13552 files and directories currently installed.) Preparing to unpack .../0-libnsl-dev_1.3.0-3build3_riscv64.deb ... Unpacking libnsl-dev:riscv64 (1.3.0-3build3) over (1.3.0-2build2) ... Preparing to unpack .../1-libcrypt-dev_1%3a4.4.36-4_riscv64.deb ... Unpacking libcrypt-dev:riscv64 (1:4.4.36-4) over (1:4.4.36-2) ... Preparing to unpack .../2-libc6-dev_2.39-0ubuntu8_riscv64.deb ... Unpacking libc6-dev:riscv64 (2.39-0ubuntu8) over (2.38-1ubuntu6) ... Preparing to unpack .../3-libc-dev-bin_2.39-0ubuntu8_riscv64.deb ... Unpacking libc-dev-bin (2.39-0ubuntu8) over (2.38-1ubuntu6) ... Preparing to unpack .../4-libtirpc-common_1.3.4+ds-1.1build1_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.1build1) over (1.3.3+ds-1) ... Preparing to unpack .../5-libtirpc-dev_1.3.4+ds-1.1build1_riscv64.deb ... Unpacking libtirpc-dev:riscv64 (1.3.4+ds-1.1build1) over (1.3.3+ds-1) ... Preparing to unpack .../6-libnss-nisplus_1.3-5build1_riscv64.deb ... Unpacking libnss-nisplus:riscv64 (1.3-5build1) over (1.3-0ubuntu6) ... dpkg: libtirpc3:riscv64: dependency problems, but removing anyway as you requested: libnsl2:riscv64 depends on libtirpc3 (>= 1.0.2). (Reading database ... 13555 files and directories currently installed.) Removing libtirpc3:riscv64 (1.3.3+ds-1) ... Selecting previously unselected package libtirpc3t64:riscv64. (Reading database ... 13549 files and directories currently installed.) Preparing to unpack .../0-libtirpc3t64_1.3.4+ds-1.1build1_riscv64.deb ... Adding 'diversion of /lib/riscv64-linux-gnu/libtirpc.so.3 to /lib/riscv64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/riscv64-linux-gnu/libtirpc.so.3.0.0 to /lib/riscv64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:riscv64 (1.3.4+ds-1.1build1) ... Preparing to unpack .../1-libgssapi-krb5-2_1.20.1-6ubuntu2_riscv64.deb ... Unpacking libgssapi-krb5-2:riscv64 (1.20.1-6ubuntu2) over (1.20.1-3ubuntu1) ... Preparing to unpack .../2-libkrb5-3_1.20.1-6ubuntu2_riscv64.deb ... Unpacking libkrb5-3:riscv64 (1.20.1-6ubuntu2) over (1.20.1-3ubuntu1) ... Preparing to unpack .../3-libk5crypto3_1.20.1-6ubuntu2_riscv64.deb ... Unpacking libk5crypto3:riscv64 (1.20.1-6ubuntu2) over (1.20.1-3ubuntu1) ... Preparing to unpack .../4-libkrb5support0_1.20.1-6ubuntu2_riscv64.deb ... Unpacking libkrb5support0:riscv64 (1.20.1-6ubuntu2) over (1.20.1-3ubuntu1) ... Preparing to unpack .../5-libacl1_2.3.2-1_riscv64.deb ... Unpacking libacl1:riscv64 (2.3.2-1) over (2.3.1-3) ... Setting up libacl1:riscv64 (2.3.2-1) ... (Reading database ... 13560 files and directories currently installed.) Preparing to unpack .../libapparmor1_4.0.0-beta3-0ubuntu3_riscv64.deb ... Unpacking libapparmor1:riscv64 (4.0.0-beta3-0ubuntu3) over (4.0.0~alpha2-0ubuntu5) ... Preparing to unpack .../libaudit-common_1%3a3.1.2-2.1build1_all.deb ... Unpacking libaudit-common (1:3.1.2-2.1build1) over (1:3.1.1-1) ... Setting up libaudit-common (1:3.1.2-2.1build1) ... (Reading database ... 13560 files and directories currently installed.) Preparing to unpack .../libcap-ng0_0.8.4-2build2_riscv64.deb ... Unpacking libcap-ng0:riscv64 (0.8.4-2build2) over (0.8.3-1build2) ... Setting up libcap-ng0:riscv64 (0.8.4-2build2) ... (Reading database ... 13560 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a3.1.2-2.1build1_riscv64.deb ... Unpacking libaudit1:riscv64 (1:3.1.2-2.1build1) over (1:3.1.1-1) ... Setting up libaudit1:riscv64 (1:3.1.2-2.1build1) ... (Reading database ... 13560 files and directories currently installed.) Preparing to unpack .../libblkid1_2.39.3-9ubuntu4_riscv64.deb ... Unpacking libblkid1:riscv64 (2.39.3-9ubuntu4) over (2.39.1-4ubuntu2) ... Setting up libblkid1:riscv64 (2.39.3-9ubuntu4) ... (Reading database ... 13560 files and directories currently installed.) Preparing to unpack .../libcap2_1%3a2.66-5ubuntu1_riscv64.deb ... Unpacking libcap2:riscv64 (1:2.66-5ubuntu1) over (1:2.66-4ubuntu1) ... Setting up libcap2:riscv64 (1:2.66-5ubuntu1) ... (Reading database ... 13560 files and directories currently installed.) Preparing to unpack .../libcrypt1_1%3a4.4.36-4_riscv64.deb ... Unpacking libcrypt1:riscv64 (1:4.4.36-4) over (1:4.4.36-2) ... Setting up libcrypt1:riscv64 (1:4.4.36-4) ... (Reading database ... 13560 files and directories currently installed.) Preparing to unpack .../libgpg-error-l10n_1.47-3build1_all.deb ... Unpacking libgpg-error-l10n (1.47-3build1) over (1.47-2) ... Preparing to unpack .../libgpg-error0_1.47-3build1_riscv64.deb ... Unpacking libgpg-error0:riscv64 (1.47-3build1) over (1.47-2) ... Setting up libgpg-error0:riscv64 (1.47-3build1) ... (Reading database ... 13560 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.10.3-2_riscv64.deb ... Unpacking libgcrypt20:riscv64 (1.10.3-2) over (1.10.2-3ubuntu1) ... Setting up libgcrypt20:riscv64 (1.10.3-2) ... (Reading database ... 13560 files and directories currently installed.) Preparing to unpack .../liblzma5_5.6.1+really5.4.5-1_riscv64.deb ... Unpacking liblzma5:riscv64 (5.6.1+really5.4.5-1) over (5.4.1-0.2) ... Setting up liblzma5:riscv64 (5.6.1+really5.4.5-1) ... (Reading database ... 13560 files and directories currently installed.) Preparing to unpack .../libzstd1_1.5.5+dfsg2-2_riscv64.deb ... Unpacking libzstd1:riscv64 (1.5.5+dfsg2-2) over (1.5.5+dfsg2-1ubuntu2) ... Setting up libzstd1:riscv64 (1.5.5+dfsg2-2) ... (Reading database ... 13560 files and directories currently installed.) Preparing to unpack .../libkmod2_31+20240202-2ubuntu5_riscv64.deb ... Unpacking libkmod2:riscv64 (31+20240202-2ubuntu5) over (30+20230519-1ubuntu3) ... Preparing to unpack .../libpcre2-8-0_10.42-4ubuntu1_riscv64.deb ... Unpacking libpcre2-8-0:riscv64 (10.42-4ubuntu1) over (10.42-4) ... Setting up libpcre2-8-0:riscv64 (10.42-4ubuntu1) ... (Reading database ... 13560 files and directories currently installed.) Preparing to unpack .../libselinux1_3.5-2ubuntu2_riscv64.deb ... Unpacking libselinux1:riscv64 (3.5-2ubuntu2) over (3.5-1) ... Setting up libselinux1:riscv64 (3.5-2ubuntu2) ... (Reading database ... 13561 files and directories currently installed.) Preparing to unpack .../libmount1_2.39.3-9ubuntu4_riscv64.deb ... Unpacking libmount1:riscv64 (2.39.3-9ubuntu4) over (2.39.1-4ubuntu2) ... Setting up libmount1:riscv64 (2.39.3-9ubuntu4) ... (Reading database ... 13561 files and directories currently installed.) Preparing to unpack .../libtext-iconv-perl_1.7-8build3_riscv64.deb ... Unpacking libtext-iconv-perl:riscv64 (1.7-8build3) over (1.7-8) ... Preparing to unpack .../libtext-charwidth-perl_0.04-11build3_riscv64.deb ... Unpacking libtext-charwidth-perl:riscv64 (0.04-11build3) over (0.04-11) ... Preparing to unpack .../perl_5.38.2-3.2build1_riscv64.deb ... Unpacking perl (5.38.2-3.2build1) over (5.36.0-9ubuntu1) ... Selecting previously unselected package perl-modules-5.38. Preparing to unpack .../perl-modules-5.38_5.38.2-3.2build1_all.deb ... Unpacking perl-modules-5.38 (5.38.2-3.2build1) ... dpkg: libdb5.3:riscv64: dependency problems, but removing anyway as you requested: libperl5.36:riscv64 depends on libdb5.3. libpam-modules:riscv64 depends on libdb5.3. apt-utils depends on libdb5.3. (Reading database ... 14975 files and directories currently installed.) Removing libdb5.3:riscv64 (5.3.28+dfsg2-2) ... Selecting previously unselected package libdb5.3t64:riscv64. (Reading database ... 14969 files and directories currently installed.) Preparing to unpack .../libdb5.3t64_5.3.28+dfsg2-6build1_riscv64.deb ... Unpacking libdb5.3t64:riscv64 (5.3.28+dfsg2-6build1) ... dpkg: libgdbm6:riscv64: dependency problems, but removing anyway as you requested: libperl5.36:riscv64 depends on libgdbm6 (>= 1.21). libgdbm-compat4:riscv64 depends on libgdbm6 (>= 1.16). (Reading database ... 14975 files and directories currently installed.) Removing libgdbm6:riscv64 (1.23-3) ... Selecting previously unselected package libgdbm6t64:riscv64. (Reading database ... 14970 files and directories currently installed.) Preparing to unpack .../libgdbm6t64_1.23-5.1build1_riscv64.deb ... Unpacking libgdbm6t64:riscv64 (1.23-5.1build1) ... dpkg: libgdbm-compat4:riscv64: dependency problems, but removing anyway as you requested: libperl5.36:riscv64 depends on libgdbm-compat4 (>= 1.18-3). (Reading database ... 14976 files and directories currently installed.) Removing libgdbm-compat4:riscv64 (1.23-3) ... Selecting previously unselected package libgdbm-compat4t64:riscv64. (Reading database ... 14971 files and directories currently installed.) Preparing to unpack .../libgdbm-compat4t64_1.23-5.1build1_riscv64.deb ... Unpacking libgdbm-compat4t64:riscv64 (1.23-5.1build1) ... Selecting previously unselected package libperl5.38t64:riscv64. Preparing to unpack .../libperl5.38t64_5.38.2-3.2build1_riscv64.deb ... Unpacking libperl5.38t64:riscv64 (5.38.2-3.2build1) ... Preparing to unpack .../perl-base_5.38.2-3.2build1_riscv64.deb ... Unpacking perl-base (5.38.2-3.2build1) over (5.36.0-9ubuntu1) ... Setting up perl-base (5.38.2-3.2build1) ... (Reading database ... 15497 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-6ubuntu5_riscv64.deb ... Unpacking liblocale-gettext-perl (1.07-6ubuntu5) over (1.07-6) ... Preparing to unpack .../openssl_3.0.13-0ubuntu3_riscv64.deb ... Unpacking openssl (3.0.13-0ubuntu3) over (3.0.10-1ubuntu2) ... Preparing to unpack .../libsystemd-shared_255.4-1ubuntu6_riscv64.deb ... Unpacking libsystemd-shared:riscv64 (255.4-1ubuntu6) over (253.5-1ubuntu6) ... Preparing to unpack .../libcryptsetup12_2%3a2.7.0-1ubuntu3_riscv64.deb ... Unpacking libcryptsetup12:riscv64 (2:2.7.0-1ubuntu3) over (2:2.6.1-4ubuntu3) ... dpkg: libssl3:riscv64: dependency problems, but removing anyway as you requested: systemd depends on libssl3 (>= 3.0.0). (Reading database ... 15494 files and directories currently installed.) Removing libssl3:riscv64 (3.0.10-1ubuntu2) ... Selecting previously unselected package libssl3t64:riscv64. (Reading database ... 15483 files and directories currently installed.) Preparing to unpack .../libssl3t64_3.0.13-0ubuntu3_riscv64.deb ... Unpacking libssl3t64:riscv64 (3.0.13-0ubuntu3) ... Setting up libssl3t64:riscv64 (3.0.13-0ubuntu3) ... (Reading database ... 15496 files and directories currently installed.) Preparing to unpack .../systemd-dev_255.4-1ubuntu6_all.deb ... Unpacking systemd-dev (255.4-1ubuntu6) over (253.5-1ubuntu6) ... Preparing to unpack .../systemd-sysv_255.4-1ubuntu6_riscv64.deb ... Unpacking systemd-sysv (255.4-1ubuntu6) over (253.5-1ubuntu6) ... Preparing to unpack .../systemd_255.4-1ubuntu6_riscv64.deb ... Unpacking systemd (255.4-1ubuntu6) over (253.5-1ubuntu6) ... dpkg: warning: unable to delete old directory '/lib/systemd/system-preset': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system-generators': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/user@0.service.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/user@.service.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/user-.slice.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/timers.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/systemd-localed.service.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/sysinit.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/sockets.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/rescue.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/rc-local.service.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/multi-user.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/initrd.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/initrd-root-fs.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/initrd-root-device.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/graphical.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/getty.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/network': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/journald.conf.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/modprobe.d': Directory not empty Preparing to unpack .../libsystemd0_255.4-1ubuntu6_riscv64.deb ... Unpacking libsystemd0:riscv64 (255.4-1ubuntu6) over (253.5-1ubuntu6) ... Setting up libsystemd0:riscv64 (255.4-1ubuntu6) ... (Reading database ... 15658 files and directories currently installed.) Preparing to unpack .../libpam-modules-bin_1.5.3-5ubuntu4_riscv64.deb ... Unpacking libpam-modules-bin (1.5.3-5ubuntu4) over (1.5.2-6ubuntu1) ... Setting up libpam-modules-bin (1.5.3-5ubuntu4) ... (Reading database ... 15657 files and directories currently installed.) Preparing to unpack .../libpam-modules_1.5.3-5ubuntu4_riscv64.deb ... Unpacking libpam-modules:riscv64 (1.5.3-5ubuntu4) over (1.5.2-6ubuntu1) ... dpkg: warning: unable to delete old directory '/lib/riscv64-linux-gnu/security': Directory not empty Setting up libpam-modules:riscv64 (1.5.3-5ubuntu4) ... Installing new version of config file /etc/security/namespace.init ... dpkg: libhogweed6:riscv64: dependency problems, but removing anyway as you requested: libgnutls30:riscv64 depends on libhogweed6 (>= 3.6). (Reading database ... 15654 files and directories currently installed.) Removing libhogweed6:riscv64 (3.9.1-2) ... dpkg: libnettle8:riscv64: dependency problems, but removing anyway as you requested: libgnutls30:riscv64 depends on libnettle8 (>= 3.7~). Removing libnettle8:riscv64 (3.9.1-2) ... Selecting previously unselected package libnettle8t64:riscv64. (Reading database ... 15642 files and directories currently installed.) Preparing to unpack .../libnettle8t64_3.9.1-2.2build1_riscv64.deb ... Unpacking libnettle8t64:riscv64 (3.9.1-2.2build1) ... Setting up libnettle8t64:riscv64 (3.9.1-2.2build1) ... Selecting previously unselected package libhogweed6t64:riscv64. (Reading database ... 15650 files and directories currently installed.) Preparing to unpack .../libhogweed6t64_3.9.1-2.2build1_riscv64.deb ... Unpacking libhogweed6t64:riscv64 (3.9.1-2.2build1) ... Setting up libhogweed6t64:riscv64 (3.9.1-2.2build1) ... (Reading database ... 15656 files and directories currently installed.) Preparing to unpack .../libp11-kit0_0.25.3-4ubuntu1_riscv64.deb ... Unpacking libp11-kit0:riscv64 (0.25.3-4ubuntu1) over (0.25.0-4ubuntu1) ... Setting up libp11-kit0:riscv64 (0.25.3-4ubuntu1) ... Selecting previously unselected package libunistring5:riscv64. (Reading database ... 15656 files and directories currently installed.) Preparing to unpack .../libunistring5_1.1-2_riscv64.deb ... Unpacking libunistring5:riscv64 (1.1-2) ... Setting up libunistring5:riscv64 (1.1-2) ... dpkg: libgnutls30:riscv64: dependency problems, but removing anyway as you requested: apt depends on libgnutls30 (>= 3.7.5). (Reading database ... 15661 files and directories currently installed.) Removing libgnutls30:riscv64 (3.8.1-4ubuntu1) ... Selecting previously unselected package libgnutls30t64:riscv64. (Reading database ... 15651 files and directories currently installed.) Preparing to unpack .../libgnutls30t64_3.8.3-1.1ubuntu3_riscv64.deb ... Unpacking libgnutls30t64:riscv64 (3.8.3-1.1ubuntu3) ... Setting up libgnutls30t64:riscv64 (3.8.3-1.1ubuntu3) ... dpkg: libapt-pkg6.0:riscv64: dependency problems, but removing anyway as you requested: apt-utils depends on libapt-pkg6.0 (>= 2.7.3). apt depends on libapt-pkg6.0 (>= 2.7.3). (Reading database ... 15663 files and directories currently installed.) Removing libapt-pkg6.0:riscv64 (2.7.3) ... Selecting previously unselected package libapt-pkg6.0t64:riscv64. (Reading database ... 15614 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0t64_2.7.14build2_riscv64.deb ... Unpacking libapt-pkg6.0t64:riscv64 (2.7.14build2) ... Setting up libapt-pkg6.0t64:riscv64 (2.7.14build2) ... (Reading database ... 15664 files and directories currently installed.) Preparing to unpack .../bzip2_1.0.8-5.1_riscv64.deb ... Unpacking bzip2 (1.0.8-5.1) over (1.0.8-5build1) ... dpkg: warning: old file '/bin/bzip2' is the same as several new files! (both '/usr/bin/bunzip2' and '/usr/bin/bzcat') dpkg: warning: old file '/bin/bzip2' is the same as several new files! (both '/usr/bin/bzcat' and '/usr/bin/bzip2') dpkg: warning: old file '/bin/bzcat' is the same as several new files! (both '/usr/bin/bunzip2' and '/usr/bin/bzcat') dpkg: warning: old file '/bin/bzcat' is the same as several new files! (both '/usr/bin/bzcat' and '/usr/bin/bzip2') dpkg: warning: old file '/bin/bunzip2' is the same as several new files! (both '/usr/bin/bunzip2' and '/usr/bin/bzcat') dpkg: warning: old file '/bin/bunzip2' is the same as several new files! (both '/usr/bin/bzcat' and '/usr/bin/bzip2') Preparing to unpack .../libbz2-1.0_1.0.8-5.1_riscv64.deb ... Unpacking libbz2-1.0:riscv64 (1.0.8-5.1) over (1.0.8-5build1) ... Setting up libbz2-1.0:riscv64 (1.0.8-5.1) ... Selecting previously unselected package gcc-14-base:riscv64. (Reading database ... 15664 files and directories currently installed.) Preparing to unpack .../gcc-14-base_14-20240315-1ubuntu1_riscv64.deb ... Unpacking gcc-14-base:riscv64 (14-20240315-1ubuntu1) ... Setting up gcc-14-base:riscv64 (14-20240315-1ubuntu1) ... (Reading database ... 15669 files and directories currently installed.) Preparing to unpack .../libgcc-s1_14-20240315-1ubuntu1_riscv64.deb ... Unpacking libgcc-s1:riscv64 (14-20240315-1ubuntu1) over (13.2.0-4ubuntu3) ... Setting up libgcc-s1:riscv64 (14-20240315-1ubuntu1) ... (Reading database ... 15669 files and directories currently installed.) Preparing to unpack .../libstdc++6_14-20240315-1ubuntu1_riscv64.deb ... Unpacking libstdc++6:riscv64 (14-20240315-1ubuntu1) over (13.2.0-4ubuntu3) ... Setting up libstdc++6:riscv64 (14-20240315-1ubuntu1) ... (Reading database ... 15669 files and directories currently installed.) Preparing to unpack .../libudev1_255.4-1ubuntu6_riscv64.deb ... Unpacking libudev1:riscv64 (255.4-1ubuntu6) over (253.5-1ubuntu6) ... Setting up libudev1:riscv64 (255.4-1ubuntu6) ... (Reading database ... 15669 files and directories currently installed.) Preparing to unpack .../libxxhash0_0.8.2-2_riscv64.deb ... Unpacking libxxhash0:riscv64 (0.8.2-2) over (0.8.1-1) ... Setting up libxxhash0:riscv64 (0.8.2-2) ... (Reading database ... 15669 files and directories currently installed.) Preparing to unpack .../zlib1g_1%3a1.3.dfsg-3.1ubuntu2_riscv64.deb ... Unpacking zlib1g:riscv64 (1:1.3.dfsg-3.1ubuntu2) over (1:1.2.13.dfsg-1ubuntu5) ... Setting up zlib1g:riscv64 (1:1.3.dfsg-3.1ubuntu2) ... (Reading database ... 15669 files and directories currently installed.) Preparing to unpack .../libffi8_3.4.6-1_riscv64.deb ... Unpacking libffi8:riscv64 (3.4.6-1) over (3.4.4-1) ... Setting up libffi8:riscv64 (3.4.6-1) ... (Reading database ... 15669 files and directories currently installed.) Preparing to unpack .../libidn2-0_2.3.7-2_riscv64.deb ... Unpacking libidn2-0:riscv64 (2.3.7-2) over (2.3.4-1) ... Setting up libidn2-0:riscv64 (2.3.7-2) ... (Reading database ... 15669 files and directories currently installed.) Preparing to unpack .../libdebconfclient0_0.271ubuntu3_riscv64.deb ... Unpacking libdebconfclient0:riscv64 (0.271ubuntu3) over (0.270ubuntu1) ... Setting up libdebconfclient0:riscv64 (0.271ubuntu3) ... (Reading database ... 15669 files and directories currently installed.) Preparing to unpack .../base-passwd_3.6.3_riscv64.deb ... Unpacking base-passwd (3.6.3) over (3.6.1) ... Setting up base-passwd (3.6.3) ... (Reading database ... 15669 files and directories currently installed.) Preparing to unpack .../libsqlite3-0_3.45.1-1ubuntu2_riscv64.deb ... Unpacking libsqlite3-0:riscv64 (3.45.1-1ubuntu2) over (3.42.0-1) ... Preparing to unpack .../gpg_2.4.4-2ubuntu16_riscv64.deb ... Unpacking gpg (2.4.4-2ubuntu16) over (2.2.40-1.1ubuntu1) ... dpkg: libreadline8:riscv64: dependency problems, but removing anyway as you requested: gpgconf depends on libreadline8 (>= 6.0). (Reading database ... 15669 files and directories currently installed.) Removing libreadline8:riscv64 (8.2-1.3) ... Selecting previously unselected package libreadline8t64:riscv64. (Reading database ... 15657 files and directories currently installed.) Preparing to unpack .../libreadline8t64_8.2-4build1_riscv64.deb ... Adding 'diversion of /lib/riscv64-linux-gnu/libhistory.so.8 to /lib/riscv64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/riscv64-linux-gnu/libhistory.so.8.2 to /lib/riscv64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/riscv64-linux-gnu/libreadline.so.8 to /lib/riscv64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/riscv64-linux-gnu/libreadline.so.8.2 to /lib/riscv64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:riscv64 (8.2-4build1) ... Preparing to unpack .../readline-common_8.2-4build1_all.deb ... Unpacking readline-common (8.2-4build1) over (8.2-1.3) ... Preparing to unpack .../libncursesw6_6.4+20240113-1ubuntu1_riscv64.deb ... Unpacking libncursesw6:riscv64 (6.4+20240113-1ubuntu1) over (6.4+20230625-2) ... Preparing to unpack .../libtinfo6_6.4+20240113-1ubuntu1_riscv64.deb ... Unpacking libtinfo6:riscv64 (6.4+20240113-1ubuntu1) over (6.4+20230625-2) ... Setting up libtinfo6:riscv64 (6.4+20240113-1ubuntu1) ... (Reading database ... 15677 files and directories currently installed.) Preparing to unpack .../gpg-agent_2.4.4-2ubuntu16_riscv64.deb ... Unpacking gpg-agent (2.4.4-2ubuntu16) over (2.2.40-1.1ubuntu1) ... Preparing to unpack .../gpgconf_2.4.4-2ubuntu16_riscv64.deb ... Unpacking gpgconf (2.4.4-2ubuntu16) over (2.2.40-1.1ubuntu1) ... Preparing to unpack .../pinentry-curses_1.2.1-3ubuntu5_riscv64.deb ... Unpacking pinentry-curses (1.2.1-3ubuntu5) over (1.2.1-1ubuntu1) ... Preparing to unpack .../init-system-helpers_1.66ubuntu1_all.deb ... Unpacking init-system-helpers (1.66ubuntu1) over (1.65.2ubuntu1) ... Setting up init-system-helpers (1.66ubuntu1) ... (Reading database ... 15676 files and directories currently installed.) Removing libnpth0:riscv64 (1.6-3build2) ... Selecting previously unselected package libnpth0t64:riscv64. (Reading database ... 15671 files and directories currently installed.) Preparing to unpack .../libnpth0t64_1.6-3.1build1_riscv64.deb ... Unpacking libnpth0t64:riscv64 (1.6-3.1build1) ... Setting up libnpth0t64:riscv64 (1.6-3.1build1) ... (Reading database ... 15677 files and directories currently installed.) Preparing to unpack .../gpgv_2.4.4-2ubuntu16_riscv64.deb ... Unpacking gpgv (2.4.4-2ubuntu16) over (2.2.40-1.1ubuntu1) ... Setting up gpgv (2.4.4-2ubuntu16) ... (Reading database ... 15677 files and directories currently installed.) Preparing to unpack .../ubuntu-keyring_2023.11.28.1_all.deb ... Unpacking ubuntu-keyring (2023.11.28.1) over (2021.03.26) ... Setting up ubuntu-keyring (2023.11.28.1) ... (Reading database ... 15677 files and directories currently installed.) Preparing to unpack .../apt-utils_2.7.14build2_riscv64.deb ... Unpacking apt-utils (2.7.14build2) over (2.7.3) ... Preparing to unpack .../apt_2.7.14build2_riscv64.deb ... Unpacking apt (2.7.14build2) over (2.7.3) ... Setting up apt (2.7.14build2) ... (Reading database ... 15677 files and directories currently installed.) Preparing to unpack .../debconf-i18n_1.5.86_all.deb ... Unpacking debconf-i18n (1.5.86) over (1.5.82) ... Preparing to unpack .../debconf_1.5.86_all.deb ... Unpacking debconf (1.5.86) over (1.5.82) ... Setting up debconf (1.5.86) ... Installing new version of config file /etc/debconf.conf ... (Reading database ... 15676 files and directories currently installed.) Preparing to unpack .../libpam0g_1.5.3-5ubuntu4_riscv64.deb ... Unpacking libpam0g:riscv64 (1.5.3-5ubuntu4) over (1.5.2-6ubuntu1) ... Setting up libpam0g:riscv64 (1.5.3-5ubuntu4) ... (Reading database ... 15675 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.5.5-1ubuntu3_riscv64.deb ... Unpacking libseccomp2:riscv64 (2.5.5-1ubuntu3) over (2.5.4-1ubuntu3) ... Preparing to unpack .../libargon2-1_0~20190702+dfsg-4_riscv64.deb ... Unpacking libargon2-1:riscv64 (0~20190702+dfsg-4) over (0~20190702+dfsg-3) ... Preparing to unpack .../libdevmapper1.02.1_2%3a1.02.185-3ubuntu3_riscv64.deb ... Unpacking libdevmapper1.02.1:riscv64 (2:1.02.185-3ubuntu3) over (2:1.02.185-2ubuntu1) ... Preparing to unpack .../libuuid1_2.39.3-9ubuntu4_riscv64.deb ... Unpacking libuuid1:riscv64 (2.39.3-9ubuntu4) over (2.39.1-4ubuntu2) ... Setting up libuuid1:riscv64 (2.39.3-9ubuntu4) ... (Reading database ... 15675 files and directories currently installed.) Preparing to unpack .../0-libfdisk1_2.39.3-9ubuntu4_riscv64.deb ... Unpacking libfdisk1:riscv64 (2.39.3-9ubuntu4) over (2.39.1-4ubuntu2) ... Preparing to unpack .../1-mount_2.39.3-9ubuntu4_riscv64.deb ... Unpacking mount (2.39.3-9ubuntu4) over (2.39.1-4ubuntu2) ... Preparing to unpack .../2-libcom-err2_1.47.0-2.4~exp1ubuntu3_riscv64.deb ... Unpacking libcom-err2:riscv64 (1.47.0-2.4~exp1ubuntu3) over (1.47.0-2ubuntu1) ... Preparing to unpack .../3-libkeyutils1_1.6.3-3_riscv64.deb ... Unpacking libkeyutils1:riscv64 (1.6.3-3) over (1.6.3-2) ... Preparing to unpack .../4-libnsl2_1.3.0-3build3_riscv64.deb ... Unpacking libnsl2:riscv64 (1.3.0-3build3) over (1.3.0-2build2) ... Preparing to unpack .../5-linux-libc-dev_6.8.0-20.20_riscv64.deb ... Unpacking linux-libc-dev:riscv64 (6.8.0-20.20) over (6.5.0-9.9) ... Preparing to unpack .../6-libc6_2.39-0ubuntu8_riscv64.deb ... Unpacking libc6:riscv64 (2.39-0ubuntu8) over (2.38-1ubuntu6) ... Setting up libc6:riscv64 (2.39-0ubuntu8) ... (Reading database ... 15687 files and directories currently installed.) Preparing to unpack .../libc-bin_2.39-0ubuntu8_riscv64.deb ... Unpacking libc-bin (2.39-0ubuntu8) over (2.38-1ubuntu6) ... Setting up libc-bin (2.39-0ubuntu8) ... (Reading database ... 15687 files and directories currently installed.) Preparing to unpack .../base-files_13ubuntu9_riscv64.deb ... Unpacking base-files (13ubuntu9) over (13ubuntu3) ... Setting up base-files (13ubuntu9) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Installing new version of config file /etc/update-motd.d/10-help-text ... (Reading database ... 15696 files and directories currently installed.) Preparing to unpack .../debianutils_5.17build1_riscv64.deb ... Unpacking debianutils (5.17build1) over (5.8-1) ... Setting up debianutils (5.17build1) ... (Reading database ... 15695 files and directories currently installed.) Preparing to unpack .../bash_5.2.21-2ubuntu4_riscv64.deb ... Unpacking bash (5.2.21-2ubuntu4) over (5.2.15-2ubuntu1) ... Setting up bash (5.2.21-2ubuntu4) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 15695 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.39.3-9ubuntu4_riscv64.deb ... Unpacking bsdutils (1:2.39.3-9ubuntu4) over (1:2.39.1-4ubuntu2) ... Setting up bsdutils (1:2.39.3-9ubuntu4) ... (Reading database ... 15695 files and directories currently installed.) Removing usrmerge (35ubuntu1) ... (Reading database ... 15669 files and directories currently installed.) Preparing to unpack .../coreutils_9.4-3ubuntu5_riscv64.deb ... Unpacking coreutils (9.4-3ubuntu5) over (9.1-1ubuntu2) ... Setting up coreutils (9.4-3ubuntu5) ... (Reading database ... 15674 files and directories currently installed.) Preparing to unpack .../tar_1.35+dfsg-3_riscv64.deb ... Unpacking tar (1.35+dfsg-3) over (1.34+dfsg-1.2ubuntu1) ... Setting up tar (1.35+dfsg-3) ... (Reading database ... 15674 files and directories currently installed.) Preparing to unpack .../dpkg_1.22.6ubuntu6_riscv64.deb ... Unpacking dpkg (1.22.6ubuntu6) over (1.22.0ubuntu1) ... Setting up dpkg (1.22.6ubuntu6) ... (Reading database ... 15672 files and directories currently installed.) Preparing to unpack .../dash_0.5.12-6ubuntu5_riscv64.deb ... Unpacking dash (0.5.12-6ubuntu5) over (0.5.12-6ubuntu1) ... Setting up dash (0.5.12-6ubuntu5) ... (Reading database ... 15671 files and directories currently installed.) Preparing to unpack .../diffutils_1%3a3.10-1_riscv64.deb ... Unpacking diffutils (1:3.10-1) over (1:3.8-4) ... Setting up diffutils (1:3.10-1) ... (Reading database ... 15671 files and directories currently installed.) Preparing to unpack .../grep_3.11-4_riscv64.deb ... Unpacking grep (3.11-4) over (3.11-2) ... Setting up grep (3.11-4) ... (Reading database ... 15671 files and directories currently installed.) Preparing to unpack .../gzip_1.12-1ubuntu2_riscv64.deb ... Unpacking gzip (1.12-1ubuntu2) over (1.12-1ubuntu1) ... dpkg: warning: old file '/bin/uncompress' is the same as several new files! (both '/usr/bin/gunzip' and '/usr/bin/uncompress') dpkg: warning: old file '/bin/gunzip' is the same as several new files! (both '/usr/bin/gunzip' and '/usr/bin/uncompress') Setting up gzip (1.12-1ubuntu2) ... (Reading database ... 15671 files and directories currently installed.) Preparing to unpack .../hostname_3.23+nmu2ubuntu1_riscv64.deb ... Unpacking hostname (3.23+nmu2ubuntu1) over (3.23+nmu1ubuntu1) ... Setting up hostname (3.23+nmu2ubuntu1) ... (Reading database ... 15671 files and directories currently installed.) Preparing to unpack .../login_1%3a4.13+dfsg1-4ubuntu1_riscv64.deb ... Unpacking login (1:4.13+dfsg1-4ubuntu1) over (1:4.13+dfsg1-1ubuntu1) ... Setting up login (1:4.13+dfsg1-4ubuntu1) ... Installing new version of config file /etc/login.defs ... Installing new version of config file /etc/pam.d/login ... (Reading database ... 15671 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.4+20240113-1ubuntu1_riscv64.deb ... Unpacking ncurses-bin (6.4+20240113-1ubuntu1) over (6.4+20230625-2) ... Setting up ncurses-bin (6.4+20240113-1ubuntu1) ... (Reading database ... 15671 files and directories currently installed.) Preparing to unpack .../archives/sed_4.9-2_riscv64.deb ... Unpacking sed (4.9-2) over (4.9-1) ... Setting up sed (4.9-2) ... (Reading database ... 15671 files and directories currently installed.) Preparing to unpack .../util-linux_2.39.3-9ubuntu4_riscv64.deb ... Unpacking util-linux (2.39.3-9ubuntu4) over (2.39.1-4ubuntu2) ... Setting up util-linux (2.39.3-9ubuntu4) ... (Reading database ... 15673 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.4+20240113-1ubuntu1_all.deb ... Unpacking ncurses-base (6.4+20240113-1ubuntu1) over (6.4+20230625-2) ... Setting up ncurses-base (6.4+20240113-1ubuntu1) ... (Reading database ... 15673 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_3.08-6ubuntu2_riscv64.deb ... Unpacking sysvinit-utils (3.08-6ubuntu2) over (3.07-1ubuntu1) ... dpkg: warning: unable to delete old directory '/lib/lsb/init-functions.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/lsb': Directory not empty dpkg: warning: unable to delete old directory '/lib/init': Directory not empty Setting up sysvinit-utils (3.08-6ubuntu2) ... (Reading database ... 15671 files and directories currently installed.) Preparing to unpack .../logsave_1.47.0-2.4~exp1ubuntu3_riscv64.deb ... Unpacking logsave (1.47.0-2.4~exp1ubuntu3) over (1.47.0-2ubuntu1) ... dpkg: libext2fs2:riscv64: dependency problems, but removing anyway as you requested: e2fsprogs depends on libext2fs2 (= 1.47.0-2ubuntu1). (Reading database ... 15671 files and directories currently installed.) Removing libext2fs2:riscv64 (1.47.0-2ubuntu1) ... Selecting previously unselected package libext2fs2t64:riscv64. (Reading database ... 15664 files and directories currently installed.) Preparing to unpack .../libext2fs2t64_1.47.0-2.4~exp1ubuntu3_riscv64.deb ... Adding 'diversion of /lib/riscv64-linux-gnu/libe2p.so.2 to /lib/riscv64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64' Adding 'diversion of /lib/riscv64-linux-gnu/libe2p.so.2.3 to /lib/riscv64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64' Adding 'diversion of /lib/riscv64-linux-gnu/libext2fs.so.2 to /lib/riscv64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64' Adding 'diversion of /lib/riscv64-linux-gnu/libext2fs.so.2.4 to /lib/riscv64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64' Unpacking libext2fs2t64:riscv64 (1.47.0-2.4~exp1ubuntu3) ... Setting up libcom-err2:riscv64 (1.47.0-2.4~exp1ubuntu3) ... Setting up libext2fs2t64:riscv64 (1.47.0-2.4~exp1ubuntu3) ... (Reading database ... 15680 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.47.0-2.4~exp1ubuntu3_riscv64.deb ... Unpacking e2fsprogs (1.47.0-2.4~exp1ubuntu3) over (1.47.0-2ubuntu1) ... dpkg: warning: unable to delete old directory '/lib/udev/rules.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/udev': Directory not empty Preparing to unpack .../optipng_0.7.8+ds-1build2_riscv64.deb ... Unpacking optipng (0.7.8+ds-1build2) over (0.7.7-2build1) ... (Reading database ... 15678 files and directories currently installed.) Removing libpng16-16:riscv64 (1.6.40-1) ... Selecting previously unselected package libpng16-16t64:riscv64. (Reading database ... 15668 files and directories currently installed.) Preparing to unpack .../libpng16-16t64_1.6.43-5build1_riscv64.deb ... Unpacking libpng16-16t64:riscv64 (1.6.43-5build1) ... Setting up libapparmor1:riscv64 (4.0.0-beta3-0ubuntu3) ... Setting up libargon2-1:riscv64 (0~20190702+dfsg-4) ... Setting up libdevmapper1.02.1:riscv64 (2:1.02.185-3ubuntu3) ... Setting up libcryptsetup12:riscv64 (2:2.7.0-1ubuntu3) ... Setting up libfdisk1:riscv64 (2.39.3-9ubuntu4) ... Setting up libkmod2:riscv64 (31+20240202-2ubuntu5) ... Setting up libseccomp2:riscv64 (2.5.5-1ubuntu3) ... Setting up libsystemd-shared:riscv64 (255.4-1ubuntu6) ... Setting up systemd-dev (255.4-1ubuntu6) ... Setting up mount (2.39.3-9ubuntu4) ... Setting up systemd (255.4-1ubuntu6) ... Installing new version of config file /etc/systemd/journald.conf ... Installing new version of config file /etc/systemd/logind.conf ... Installing new version of config file /etc/systemd/networkd.conf ... Installing new version of config file /etc/systemd/pstore.conf ... Installing new version of config file /etc/systemd/sleep.conf ... Installing new version of config file /etc/systemd/system.conf ... Installing new version of config file /etc/systemd/user.conf ... Initializing machine ID from random generator. Setting up systemd-sysv (255.4-1ubuntu6) ... (Reading database ... 15679 files and directories currently installed.) Preparing to unpack .../init_1.66ubuntu1_riscv64.deb ... Unpacking init (1.66ubuntu1) over (1.65.2ubuntu1) ... Preparing to unpack .../libsmartcols1_2.39.3-9ubuntu4_riscv64.deb ... Unpacking libsmartcols1:riscv64 (2.39.3-9ubuntu4) over (2.39.1-4ubuntu2) ... Setting up libsmartcols1:riscv64 (2.39.3-9ubuntu4) ... (Reading database ... 15680 files and directories currently installed.) Preparing to unpack .../uuid-runtime_2.39.3-9ubuntu4_riscv64.deb ... Unpacking uuid-runtime (2.39.3-9ubuntu4) over (2.39.1-4ubuntu2) ... dpkg: warning: unable to delete old directory '/lib/systemd/system': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd': Directory not empty Preparing to unpack .../libattr1_1%3a2.5.2-1_riscv64.deb ... Unpacking libattr1:riscv64 (1:2.5.2-1) over (1:2.5.1-4) ... Setting up libattr1:riscv64 (1:2.5.2-1) ... (Reading database ... 15678 files and directories currently installed.) Preparing to unpack .../libmd0_1.1.0-2_riscv64.deb ... Unpacking libmd0:riscv64 (1.1.0-2) over (1.1.0-1) ... Setting up libmd0:riscv64 (1.1.0-2) ... (Reading database ... 15678 files and directories currently installed.) Preparing to unpack .../libpam-runtime_1.5.3-5ubuntu4_all.deb ... Unpacking libpam-runtime (1.5.3-5ubuntu4) over (1.5.2-6ubuntu1) ... Setting up libpam-runtime (1.5.3-5ubuntu4) ... (Reading database ... 15677 files and directories currently installed.) Preparing to unpack .../libsemanage-common_3.5-1build5_all.deb ... Unpacking libsemanage-common (3.5-1build5) over (3.5-1) ... Setting up libsemanage-common (3.5-1build5) ... (Reading database ... 15677 files and directories currently installed.) Preparing to unpack .../libsepol2_3.5-2_riscv64.deb ... Unpacking libsepol2:riscv64 (3.5-2) over (3.5-1) ... Setting up libsepol2:riscv64 (3.5-2) ... (Reading database ... 15677 files and directories currently installed.) Preparing to unpack .../libsemanage2_3.5-1build5_riscv64.deb ... Unpacking libsemanage2:riscv64 (3.5-1build5) over (3.5-1) ... Setting up libsemanage2:riscv64 (3.5-1build5) ... (Reading database ... 15677 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.13+dfsg1-4ubuntu1_riscv64.deb ... Unpacking passwd (1:4.13+dfsg1-4ubuntu1) over (1:4.13+dfsg1-1ubuntu1) ... Setting up passwd (1:4.13+dfsg1-4ubuntu1) ... (Reading database ... 15677 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-4ubuntu3_riscv64.deb ... Unpacking libproc2-0:riscv64 (2:4.0.4-4ubuntu3) over (2:4.0.3-1ubuntu1) ... Preparing to unpack .../01-libss2_1.47.0-2.4~exp1ubuntu3_riscv64.deb ... Unpacking libss2:riscv64 (1.47.0-2.4~exp1ubuntu3) over (1.47.0-2ubuntu1) ... Preparing to unpack .../02-mawk_1.3.4.20240123-1_riscv64.deb ... Unpacking mawk (1.3.4.20240123-1) over (1.3.4.20230730-1) ... Preparing to unpack .../03-procps_2%3a4.0.4-4ubuntu3_riscv64.deb ... Unpacking procps (2:4.0.4-4ubuntu3) over (2:4.0.3-1ubuntu1) ... Preparing to unpack .../04-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) over (0.0.20) ... Preparing to unpack .../05-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) over (20230311ubuntu1) ... Preparing to unpack .../06-krb5-locales_1.20.1-6ubuntu2_all.deb ... Unpacking krb5-locales (1.20.1-6ubuntu2) over (1.20.1-3ubuntu1) ... Preparing to unpack .../07-tzdata_2024a-1ubuntu1_all.deb ... Unpacking tzdata (2024a-1ubuntu1) over (2023c-9ubuntu1) ... Preparing to unpack .../08-bash-completion_1%3a2.11-8_all.deb ... Unpacking bash-completion (1:2.11-8) over (1:2.11-7) ... Preparing to unpack .../09-bsdextrautils_2.39.3-9ubuntu4_riscv64.deb ... Unpacking bsdextrautils (2.39.3-9ubuntu4) over (2.39.1-4ubuntu2) ... Preparing to unpack .../10-libgpm2_1.20.7-11_riscv64.deb ... Unpacking libgpm2:riscv64 (1.20.7-11) over (1.20.7-10build1) ... Preparing to unpack .../11-libip4tc2_1.8.10-3ubuntu1_riscv64.deb ... Unpacking libip4tc2:riscv64 (1.8.10-3ubuntu1) over (1.8.9-2ubuntu2) ... Preparing to unpack .../12-libjansson4_2.14-2build2_riscv64.deb ... Unpacking libjansson4:riscv64 (2.14-2build2) over (2.14-2) ... Preparing to unpack .../13-psmisc_23.7-1build1_riscv64.deb ... Unpacking psmisc (23.7-1build1) over (23.6-1) ... Preparing to unpack .../14-xz-utils_5.6.1+really5.4.5-1_riscv64.deb ... Unpacking xz-utils (5.6.1+really5.4.5-1) over (5.4.1-0.2) ... Preparing to unpack .../15-libctf0_2.42-4ubuntu2_riscv64.deb ... Unpacking libctf0:riscv64 (2.42-4ubuntu2) over (2.41-5ubuntu1) ... Preparing to unpack .../16-libctf-nobfd0_2.42-4ubuntu2_riscv64.deb ... Unpacking libctf-nobfd0:riscv64 (2.42-4ubuntu2) over (2.41-5ubuntu1) ... Preparing to unpack .../17-binutils-riscv64-linux-gnu_2.42-4ubuntu2_riscv64.deb ... Unpacking binutils-riscv64-linux-gnu (2.42-4ubuntu2) over (2.41-5ubuntu1) ... Preparing to unpack .../18-libbinutils_2.42-4ubuntu2_riscv64.deb ... Unpacking libbinutils:riscv64 (2.42-4ubuntu2) over (2.41-5ubuntu1) ... Preparing to unpack .../19-binutils_2.42-4ubuntu2_riscv64.deb ... Unpacking binutils (2.42-4ubuntu2) over (2.41-5ubuntu1) ... Preparing to unpack .../20-binutils-common_2.42-4ubuntu2_riscv64.deb ... Unpacking binutils-common:riscv64 (2.42-4ubuntu2) over (2.41-5ubuntu1) ... Preparing to unpack .../21-libsframe1_2.42-4ubuntu2_riscv64.deb ... Unpacking libsframe1:riscv64 (2.42-4ubuntu2) over (2.41-5ubuntu1) ... Preparing to unpack .../22-libgomp1_14-20240315-1ubuntu1_riscv64.deb ... Unpacking libgomp1:riscv64 (14-20240315-1ubuntu1) over (13.2.0-4ubuntu3) ... Preparing to unpack .../23-libatomic1_14-20240315-1ubuntu1_riscv64.deb ... Unpacking libatomic1:riscv64 (14-20240315-1ubuntu1) over (13.2.0-4ubuntu3) ... Preparing to unpack .../24-libasan8_14-20240315-1ubuntu1_riscv64.deb ... Unpacking libasan8:riscv64 (14-20240315-1ubuntu1) over (13.2.0-4ubuntu3) ... Selecting previously unselected package libubsan1:riscv64. Preparing to unpack .../25-libubsan1_14-20240315-1ubuntu1_riscv64.deb ... Unpacking libubsan1:riscv64 (14-20240315-1ubuntu1) ... Preparing to unpack .../26-g++-13_13.2.0-23ubuntu3_riscv64.deb ... Unpacking g++-13 (13.2.0-23ubuntu3) over (13.2.0-4ubuntu3) ... Preparing to unpack .../27-gcc-13_13.2.0-23ubuntu3_riscv64.deb ... Unpacking gcc-13 (13.2.0-23ubuntu3) over (13.2.0-4ubuntu3) ... Preparing to unpack .../28-libstdc++-13-dev_13.2.0-23ubuntu3_riscv64.deb ... Unpacking libstdc++-13-dev:riscv64 (13.2.0-23ubuntu3) over (13.2.0-4ubuntu3) ... Preparing to unpack .../29-libgcc-13-dev_13.2.0-23ubuntu3_riscv64.deb ... Unpacking libgcc-13-dev:riscv64 (13.2.0-23ubuntu3) over (13.2.0-4ubuntu3) ... Preparing to unpack .../30-libcc1-0_14-20240315-1ubuntu1_riscv64.deb ... Unpacking libcc1-0:riscv64 (14-20240315-1ubuntu1) over (13.2.0-4ubuntu3) ... Preparing to unpack .../31-cpp-13_13.2.0-23ubuntu3_riscv64.deb ... Unpacking cpp-13 (13.2.0-23ubuntu3) over (13.2.0-4ubuntu3) ... Preparing to unpack .../32-gcc-13-base_13.2.0-23ubuntu3_riscv64.deb ... Unpacking gcc-13-base:riscv64 (13.2.0-23ubuntu3) over (13.2.0-4ubuntu3) ... Selecting previously unselected package gcc-13-riscv64-linux-gnu. Preparing to unpack .../33-gcc-13-riscv64-linux-gnu_13.2.0-23ubuntu3_riscv64.deb ... Unpacking gcc-13-riscv64-linux-gnu (13.2.0-23ubuntu3) ... Selecting previously unselected package g++-13-riscv64-linux-gnu. Preparing to unpack .../34-g++-13-riscv64-linux-gnu_13.2.0-23ubuntu3_riscv64.deb ... Unpacking g++-13-riscv64-linux-gnu (13.2.0-23ubuntu3) ... Selecting previously unselected package cpp-13-riscv64-linux-gnu. Preparing to unpack .../35-cpp-13-riscv64-linux-gnu_13.2.0-23ubuntu3_riscv64.deb ... Unpacking cpp-13-riscv64-linux-gnu (13.2.0-23ubuntu3) ... Preparing to unpack .../36-g++_4%3a13.2.0-7ubuntu1_riscv64.deb ... Unpacking g++ (4:13.2.0-7ubuntu1) over (4:13.2.0-1ubuntu1) ... Preparing to unpack .../37-gcc_4%3a13.2.0-7ubuntu1_riscv64.deb ... Unpacking gcc (4:13.2.0-7ubuntu1) over (4:13.2.0-1ubuntu1) ... Preparing to unpack .../38-cpp_4%3a13.2.0-7ubuntu1_riscv64.deb ... Unpacking cpp (4:13.2.0-7ubuntu1) over (4:13.2.0-1ubuntu1) ... Selecting previously unselected package cpp-riscv64-linux-gnu. Preparing to unpack .../39-cpp-riscv64-linux-gnu_4%3a13.2.0-7ubuntu1_riscv64.deb ... Unpacking cpp-riscv64-linux-gnu (4:13.2.0-7ubuntu1) ... Selecting previously unselected package gcc-riscv64-linux-gnu. Preparing to unpack .../40-gcc-riscv64-linux-gnu_4%3a13.2.0-7ubuntu1_riscv64.deb ... Unpacking gcc-riscv64-linux-gnu (4:13.2.0-7ubuntu1) ... Selecting previously unselected package g++-riscv64-linux-gnu. Preparing to unpack .../41-g++-riscv64-linux-gnu_4%3a13.2.0-7ubuntu1_riscv64.deb ... Unpacking g++-riscv64-linux-gnu (4:13.2.0-7ubuntu1) ... Preparing to unpack .../42-dpkg-dev_1.22.6ubuntu6_all.deb ... Unpacking dpkg-dev (1.22.6ubuntu6) over (1.22.0ubuntu1) ... Preparing to unpack .../43-libdpkg-perl_1.22.6ubuntu6_all.deb ... Unpacking libdpkg-perl (1.22.6ubuntu6) over (1.22.0ubuntu1) ... Preparing to unpack .../44-lto-disabled-list_47_all.deb ... Unpacking lto-disabled-list (47) over (43) ... Preparing to unpack .../45-libfakeroot_1.33-1_riscv64.deb ... Unpacking libfakeroot:riscv64 (1.33-1) over (1.32.1-1) ... Preparing to unpack .../46-fakeroot_1.33-1_riscv64.deb ... Unpacking fakeroot (1.33-1) over (1.32.1-1) ... Setting up libip4tc2:riscv64 (1.8.10-3ubuntu1) ... Setting up libtext-iconv-perl:riscv64 (1.7-8build3) ... Setting up libtext-charwidth-perl:riscv64 (0.04-11build3) ... Setting up libkeyutils1:riscv64 (1.6.3-3) ... Setting up lto-disabled-list (47) ... Setting up libgpm2:riscv64 (1.20.7-11) ... Setting up libgdbm6t64:riscv64 (1.23-5.1build1) ... Setting up bsdextrautils (2.39.3-9ubuntu4) ... Setting up init (1.66ubuntu1) ... Setting up libgdbm-compat4t64:riscv64 (1.23-5.1build1) ... Setting up psmisc (23.7-1build1) ... Setting up libtirpc-common (1.3.4+ds-1.1build1) ... Setting up libsqlite3-0:riscv64 (3.45.1-1ubuntu2) ... Setting up binutils-common:riscv64 (2.42-4ubuntu2) ... Setting up linux-libc-dev:riscv64 (6.8.0-20.20) ... Setting up libctf-nobfd0:riscv64 (2.42-4ubuntu2) ... Setting up krb5-locales (1.20.1-6ubuntu2) ... Setting up libgomp1:riscv64 (14-20240315-1ubuntu1) ... Setting up bzip2 (1.0.8-5.1) ... Setting up libsframe1:riscv64 (2.42-4ubuntu2) ... Setting up libfakeroot:riscv64 (1.33-1) ... Setting up libjansson4:riscv64 (2.14-2build2) ... Setting up libkrb5support0:riscv64 (1.20.1-6ubuntu2) ... Setting up tzdata (2024a-1ubuntu1) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Apr 2 12:29:00 UTC 2024. Universal Time is now: Tue Apr 2 12:29:00 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up fakeroot (1.33-1) ... Setting up gcc-13-base:riscv64 (13.2.0-23ubuntu3) ... Setting up bash-completion (1:2.11-8) ... Setting up xz-utils (5.6.1+really5.4.5-1) ... Setting up perl-modules-5.38 (5.38.2-3.2build1) ... Setting up libproc2-0:riscv64 (2:4.0.4-4ubuntu3) ... Setting up libpng16-16t64:riscv64 (1.6.43-5build1) ... Setting up libatomic1:riscv64 (14-20240315-1ubuntu1) ... Setting up libss2:riscv64 (1.47.0-2.4~exp1ubuntu3) ... Setting up libncursesw6:riscv64 (6.4+20240113-1ubuntu1) ... Setting up libk5crypto3:riscv64 (1.20.1-6ubuntu2) ... Setting up logsave (1.47.0-2.4~exp1ubuntu3) ... Setting up libdb5.3t64:riscv64 (5.3.28+dfsg2-6build1) ... Setting up libubsan1:riscv64 (14-20240315-1ubuntu1) ... Setting up sensible-utils (0.0.22) ... Setting up uuid-runtime (2.39.3-9ubuntu4) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of restart. Setting up libcrypt-dev:riscv64 (1:4.4.36-4) ... Setting up libasan8:riscv64 (14-20240315-1ubuntu1) ... Setting up procps (2:4.0.4-4ubuntu3) ... Installing new version of config file /etc/sysctl.conf ... Setting up mawk (1.3.4.20240123-1) ... Setting up libkrb5-3:riscv64 (1.20.1-6ubuntu2) ... Setting up libperl5.38t64:riscv64 (5.38.2-3.2build1) ... Setting up libbinutils:riscv64 (2.42-4ubuntu2) ... Setting up libc-dev-bin (2.39-0ubuntu8) ... Setting up openssl (3.0.13-0ubuntu3) ... Setting up libgpg-error-l10n (1.47-3build1) ... Setting up readline-common (8.2-4build1) ... Setting up libcc1-0:riscv64 (14-20240315-1ubuntu1) ... Setting up liblocale-gettext-perl (1.07-6ubuntu5) ... Setting up libctf0:riscv64 (2.42-4ubuntu2) ... Setting up pinentry-curses (1.2.1-3ubuntu5) ... Setting up apt-utils (2.7.14build2) ... Setting up cpp-13-riscv64-linux-gnu (13.2.0-23ubuntu3) ... Setting up binutils-riscv64-linux-gnu (2.42-4ubuntu2) ... Setting up debconf-i18n (1.5.86) ... Setting up e2fsprogs (1.47.0-2.4~exp1ubuntu3) ... Setting up binutils (2.42-4ubuntu2) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... rehash: warning: skipping ca-certificates.crt,it does not contain exactly one certificate or CRL 14 added, 5 removed; done. Setting up perl (5.38.2-3.2build1) ... Setting up optipng (0.7.8+ds-1build2) ... Setting up libgssapi-krb5-2:riscv64 (1.20.1-6ubuntu2) ... Setting up libdpkg-perl (1.22.6ubuntu6) ... Setting up libreadline8t64:riscv64 (8.2-4build1) ... Setting up libgcc-13-dev:riscv64 (13.2.0-23ubuntu3) ... Setting up gpgconf (2.4.4-2ubuntu16) ... Setting up libc6-dev:riscv64 (2.39-0ubuntu8) ... Setting up cpp-riscv64-linux-gnu (4:13.2.0-7ubuntu1) ... Setting up gpg (2.4.4-2ubuntu16) ... Setting up libstdc++-13-dev:riscv64 (13.2.0-23ubuntu3) ... Setting up gpg-agent (2.4.4-2ubuntu16) ... Setting up cpp-13 (13.2.0-23ubuntu3) ... Setting up libtirpc3t64:riscv64 (1.3.4+ds-1.1build1) ... Setting up gcc-13-riscv64-linux-gnu (13.2.0-23ubuntu3) ... Setting up dpkg-dev (1.22.6ubuntu6) ... Setting up gcc-riscv64-linux-gnu (4:13.2.0-7ubuntu1) ... Setting up libtirpc-dev:riscv64 (1.3.4+ds-1.1build1) ... Setting up gcc-13 (13.2.0-23ubuntu3) ... Setting up cpp (4:13.2.0-7ubuntu1) ... Setting up libnsl2:riscv64 (1.3.0-3build3) ... Setting up g++-13-riscv64-linux-gnu (13.2.0-23ubuntu3) ... Setting up g++-13 (13.2.0-23ubuntu3) ... Setting up libnss-nisplus:riscv64 (1.3-5build1) ... Setting up gcc (4:13.2.0-7ubuntu1) ... Setting up g++-riscv64-linux-gnu (4:13.2.0-7ubuntu1) ... Setting up g++ (4:13.2.0-7ubuntu1) ... Setting up libnsl-dev:riscv64 (1.3.0-3build3) ... Processing triggers for libc-bin (2.39-0ubuntu8) ... Processing triggers for debianutils (5.17build1) ... (Reading database ... 15732 files and directories currently installed.) Purging configuration files for libssl3:riscv64 (3.0.10-1ubuntu2) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-28012738 riscv64 noble-proposed -c chroot:build-PACKAGEBUILD-28012738 --arch=riscv64 --dist=noble-proposed --nolog stacks_2.66+dfsg-1build2.dsc Initiating build PACKAGEBUILD-28012738 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 6.5.0-26-generic #26.1~22.04.1-Ubuntu SMP Thu Mar 14 04:00:07 UTC 2024 riscv64 sbuild (Debian sbuild) 0.81.2ubuntu6 (16 February 2022) on bos03-riscv64-118.buildd +==============================================================================+ | stacks 2.66+dfsg-1build2 (riscv64) Tue, 02 Apr 2024 12:32:06 +0000 | +==============================================================================+ Package: stacks Version: 2.66+dfsg-1build2 Source Version: 2.66+dfsg-1build2 Distribution: noble-proposed Machine Architecture: riscv64 Host Architecture: riscv64 Build Architecture: riscv64 Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-28012738/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/stacks-eUijv4/resolver-ypcdRm' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- stacks_2.66+dfsg-1build2.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/stacks-eUijv4/stacks-2.66+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/stacks-eUijv4' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), zlib1g-dev, libbam-dev, libsparsehash-dev, samtools, libhts-dev, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), zlib1g-dev, libbam-dev, libsparsehash-dev, samtools, libhts-dev, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [401 B] Get:5 copy:/<>/apt_archive ./ Packages [485 B] Fetched 1843 B in 1s (3333 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: apt-utils bash-completion ca-certificates debconf-i18n krb5-locales libgpg-error-l10n libgpm2 libip4tc2 liblocale-gettext-perl libnsl-dev libnsl2 libnss-nis libnss-nisplus libperl5.36 libtext-charwidth-perl libtext-iconv-perl libtext-wrapi18n-perl libtirpc-common libtirpc-dev libtirpc3t64 libunistring2 openssl perl-modules-5.36 psmisc uuid-runtime Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbam-dev libbrotli1 libcurl3t64-gnutls libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev libdeflate0 libdw1t64 libelf1t64 libfile-stripnondeterminism-perl libhts-dev libhts3t64 libhtscodecs2 libicu74 libldap2 liblzma-dev libmagic-mgc libmagic1t64 libncurses6 libnghttp2-14 libpipeline1 libpsl5t64 librtmp1 libsasl2-2 libsasl2-modules-db libsparsehash-dev libssh-4 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf samtools zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libcurl4-doc libgnutls28-dev libidn-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev pkg-config liblzma-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl cwltool Recommended packages: curl | wget | lynx libarchive-cpio-perl libldap-common publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbam-dev libbrotli1 libcurl3t64-gnutls libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev libdeflate0 libdw1t64 libelf1t64 libfile-stripnondeterminism-perl libhts-dev libhts3t64 libhtscodecs2 libicu74 libldap2 liblzma-dev libmagic-mgc libmagic1t64 libncurses6 libnghttp2-14 libpipeline1 libpsl5t64 librtmp1 libsasl2-2 libsasl2-modules-db libsparsehash-dev libssh-4 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf samtools sbuild-build-depends-main-dummy zlib1g-dev 0 upgraded, 52 newly installed, 0 to remove and 0 not upgraded. Need to get 28.6 MB of archives. After this operation, 120 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [700 B] Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libelf1t64 riscv64 0.190-1.1build3 [63.5 kB] Get:3 http://ftpmaster.internal/ubuntu noble/main riscv64 libicu74 riscv64 74.2-1ubuntu1 [10.9 MB] Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libxml2 riscv64 2.9.14+dfsg-1.3ubuntu3 [719 kB] Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libmagic-mgc riscv64 1:5.45-3build1 [307 kB] Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libmagic1t64 riscv64 1:5.45-3build1 [96.4 kB] Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 file riscv64 1:5.45-3build1 [21.9 kB] Get:8 http://ftpmaster.internal/ubuntu noble/main riscv64 gettext-base riscv64 0.21-14ubuntu1 [42.5 kB] Get:9 http://ftpmaster.internal/ubuntu noble/main riscv64 libuchardet0 riscv64 0.0.8-1 [77.4 kB] Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 groff-base riscv64 1.23.0-3build2 [1031 kB] Get:11 http://ftpmaster.internal/ubuntu noble/main riscv64 libncurses6 riscv64 6.4+20240113-1ubuntu1 [116 kB] Get:12 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libnghttp2-14 riscv64 1.59.0-1build2 [85.5 kB] Get:13 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libpipeline1 riscv64 1.5.7-2 [30.9 kB] Get:14 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libpsl5t64 riscv64 0.21.2-1.1build1 [57.9 kB] Get:15 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 man-db riscv64 2.12.0-4build1 [1226 kB] Get:16 http://ftpmaster.internal/ubuntu noble/main riscv64 m4 riscv64 1.4.19-4 [261 kB] Get:17 http://ftpmaster.internal/ubuntu noble/main riscv64 autoconf all 2.71-3 [339 kB] Get:18 http://ftpmaster.internal/ubuntu noble/main riscv64 autotools-dev all 20220109.1 [44.9 kB] Get:19 http://ftpmaster.internal/ubuntu noble/main riscv64 automake all 1:1.16.5-1.3ubuntu1 [558 kB] Get:20 http://ftpmaster.internal/ubuntu noble/main riscv64 autopoint all 0.21-14ubuntu1 [422 kB] Get:21 http://ftpmaster.internal/ubuntu noble/main riscv64 libdebhelper-perl all 13.14.1ubuntu5 [89.8 kB] Get:22 http://ftpmaster.internal/ubuntu noble/main riscv64 libtool all 2.4.7-7 [166 kB] Get:23 http://ftpmaster.internal/ubuntu noble/main riscv64 dh-autoreconf all 20 [16.1 kB] Get:24 http://ftpmaster.internal/ubuntu noble/main riscv64 libarchive-zip-perl all 1.68-1 [90.2 kB] Get:25 http://ftpmaster.internal/ubuntu noble/main riscv64 libsub-override-perl all 0.10-1 [10.0 kB] Get:26 http://ftpmaster.internal/ubuntu noble/main riscv64 libfile-stripnondeterminism-perl all 1.13.1-1 [18.1 kB] Get:27 http://ftpmaster.internal/ubuntu noble/main riscv64 dh-strip-nondeterminism all 1.13.1-1 [5362 B] Get:28 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libdw1t64 riscv64 0.190-1.1build3 [275 kB] Get:29 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 debugedit riscv64 1:5.0-5build1 [49.2 kB] Get:30 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 dwz riscv64 0.15-1build6 [125 kB] Get:31 http://ftpmaster.internal/ubuntu noble/main riscv64 gettext riscv64 0.21-14ubuntu1 [874 kB] Get:32 http://ftpmaster.internal/ubuntu noble/main riscv64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] Get:33 http://ftpmaster.internal/ubuntu noble/main riscv64 po-debconf all 1.0.21+nmu1 [233 kB] Get:34 http://ftpmaster.internal/ubuntu noble/main riscv64 debhelper all 13.14.1ubuntu5 [869 kB] Get:35 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 zlib1g-dev riscv64 1:1.3.dfsg-3.1ubuntu2 [968 kB] Get:36 http://ftpmaster.internal/ubuntu noble/universe riscv64 libbam-dev riscv64 0.1.19+dfsg-6ubuntu1 [284 kB] Get:37 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libbrotli1 riscv64 1.1.0-2build2 [389 kB] Get:38 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libsasl2-modules-db riscv64 2.1.28+dfsg1-5ubuntu2 [22.1 kB] Get:39 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libsasl2-2 riscv64 2.1.28+dfsg1-5ubuntu2 [62.3 kB] Get:40 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libldap2 riscv64 2.6.7+dfsg-1~exp1ubuntu7 [207 kB] Get:41 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 librtmp1 riscv64 2.4+20151223.gitfa8646d.1-2build7 [58.8 kB] Get:42 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libssh-4 riscv64 0.10.6-2build2 [202 kB] Get:43 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libcurl3t64-gnutls riscv64 8.5.0-2ubuntu9 [347 kB] Get:44 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libcurl4-gnutls-dev riscv64 8.5.0-2ubuntu9 [1097 kB] Get:45 http://ftpmaster.internal/ubuntu noble/main riscv64 libdeflate0 riscv64 1.19-1 [40.0 kB] Get:46 http://ftpmaster.internal/ubuntu noble/main riscv64 libdeflate-dev riscv64 1.19-1 [90.4 kB] Get:47 http://ftpmaster.internal/ubuntu noble/universe riscv64 libhtscodecs2 riscv64 1.6.0-1 [84.5 kB] Get:48 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 libhts3t64 riscv64 1.19+ds-1.1build3 [463 kB] Get:49 http://ftpmaster.internal/ubuntu noble/main riscv64 liblzma-dev riscv64 5.6.1+really5.4.5-1 [343 kB] Get:50 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 libhts-dev riscv64 1.19+ds-1.1build3 [3948 kB] Get:51 http://ftpmaster.internal/ubuntu noble/universe riscv64 libsparsehash-dev all 2.0.3-2 [71.7 kB] Get:52 http://ftpmaster.internal/ubuntu noble/universe riscv64 samtools riscv64 1.19.2-1build1 [650 kB] Preconfiguring packages ... Fetched 28.6 MB in 5s (5250 kB/s) Selecting previously unselected package libelf1t64:riscv64. (Reading database ... 15732 files and directories currently installed.) Preparing to unpack .../00-libelf1t64_0.190-1.1build3_riscv64.deb ... Unpacking libelf1t64:riscv64 (0.190-1.1build3) ... Selecting previously unselected package libicu74:riscv64. Preparing to unpack .../01-libicu74_74.2-1ubuntu1_riscv64.deb ... Unpacking libicu74:riscv64 (74.2-1ubuntu1) ... Selecting previously unselected package libxml2:riscv64. Preparing to unpack .../02-libxml2_2.9.14+dfsg-1.3ubuntu3_riscv64.deb ... Unpacking libxml2:riscv64 (2.9.14+dfsg-1.3ubuntu3) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3build1_riscv64.deb ... Unpacking libmagic-mgc (1:5.45-3build1) ... Selecting previously unselected package libmagic1t64:riscv64. Preparing to unpack .../04-libmagic1t64_1%3a5.45-3build1_riscv64.deb ... Unpacking libmagic1t64:riscv64 (1:5.45-3build1) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-3build1_riscv64.deb ... Unpacking file (1:5.45-3build1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.21-14ubuntu1_riscv64.deb ... Unpacking gettext-base (0.21-14ubuntu1) ... Selecting previously unselected package libuchardet0:riscv64. Preparing to unpack .../07-libuchardet0_0.0.8-1_riscv64.deb ... Unpacking libuchardet0:riscv64 (0.0.8-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-3build2_riscv64.deb ... Unpacking groff-base (1.23.0-3build2) ... Selecting previously unselected package libncurses6:riscv64. Preparing to unpack .../09-libncurses6_6.4+20240113-1ubuntu1_riscv64.deb ... Unpacking libncurses6:riscv64 (6.4+20240113-1ubuntu1) ... Selecting previously unselected package libnghttp2-14:riscv64. Preparing to unpack .../10-libnghttp2-14_1.59.0-1build2_riscv64.deb ... Unpacking libnghttp2-14:riscv64 (1.59.0-1build2) ... Selecting previously unselected package libpipeline1:riscv64. Preparing to unpack .../11-libpipeline1_1.5.7-2_riscv64.deb ... Unpacking libpipeline1:riscv64 (1.5.7-2) ... Selecting previously unselected package libpsl5t64:riscv64. Preparing to unpack .../12-libpsl5t64_0.21.2-1.1build1_riscv64.deb ... Unpacking libpsl5t64:riscv64 (0.21.2-1.1build1) ... Selecting previously unselected package man-db. Preparing to unpack .../13-man-db_2.12.0-4build1_riscv64.deb ... Unpacking man-db (2.12.0-4build1) ... Selecting previously unselected package m4. Preparing to unpack .../14-m4_1.4.19-4_riscv64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../15-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../16-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../17-automake_1%3a1.16.5-1.3ubuntu1_all.deb ... Unpacking automake (1:1.16.5-1.3ubuntu1) ... Selecting previously unselected package autopoint. Preparing to unpack .../18-autopoint_0.21-14ubuntu1_all.deb ... Unpacking autopoint (0.21-14ubuntu1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../19-libdebhelper-perl_13.14.1ubuntu5_all.deb ... Unpacking libdebhelper-perl (13.14.1ubuntu5) ... Selecting previously unselected package libtool. Preparing to unpack .../20-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../21-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../22-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../23-libsub-override-perl_0.10-1_all.deb ... Unpacking libsub-override-perl (0.10-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../24-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../25-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libdw1t64:riscv64. Preparing to unpack .../26-libdw1t64_0.190-1.1build3_riscv64.deb ... Unpacking libdw1t64:riscv64 (0.190-1.1build3) ... Selecting previously unselected package debugedit. Preparing to unpack .../27-debugedit_1%3a5.0-5build1_riscv64.deb ... Unpacking debugedit (1:5.0-5build1) ... Selecting previously unselected package dwz. Preparing to unpack .../28-dwz_0.15-1build6_riscv64.deb ... Unpacking dwz (0.15-1build6) ... Selecting previously unselected package gettext. Preparing to unpack .../29-gettext_0.21-14ubuntu1_riscv64.deb ... Unpacking gettext (0.21-14ubuntu1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../30-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../31-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../32-debhelper_13.14.1ubuntu5_all.deb ... Unpacking debhelper (13.14.1ubuntu5) ... Selecting previously unselected package zlib1g-dev:riscv64. Preparing to unpack .../33-zlib1g-dev_1%3a1.3.dfsg-3.1ubuntu2_riscv64.deb ... Unpacking zlib1g-dev:riscv64 (1:1.3.dfsg-3.1ubuntu2) ... Selecting previously unselected package libbam-dev. Preparing to unpack .../34-libbam-dev_0.1.19+dfsg-6ubuntu1_riscv64.deb ... Unpacking libbam-dev (0.1.19+dfsg-6ubuntu1) ... Selecting previously unselected package libbrotli1:riscv64. Preparing to unpack .../35-libbrotli1_1.1.0-2build2_riscv64.deb ... Unpacking libbrotli1:riscv64 (1.1.0-2build2) ... Selecting previously unselected package libsasl2-modules-db:riscv64. Preparing to unpack .../36-libsasl2-modules-db_2.1.28+dfsg1-5ubuntu2_riscv64.deb ... Unpacking libsasl2-modules-db:riscv64 (2.1.28+dfsg1-5ubuntu2) ... Selecting previously unselected package libsasl2-2:riscv64. Preparing to unpack .../37-libsasl2-2_2.1.28+dfsg1-5ubuntu2_riscv64.deb ... Unpacking libsasl2-2:riscv64 (2.1.28+dfsg1-5ubuntu2) ... Selecting previously unselected package libldap2:riscv64. Preparing to unpack .../38-libldap2_2.6.7+dfsg-1~exp1ubuntu7_riscv64.deb ... Unpacking libldap2:riscv64 (2.6.7+dfsg-1~exp1ubuntu7) ... Selecting previously unselected package librtmp1:riscv64. Preparing to unpack .../39-librtmp1_2.4+20151223.gitfa8646d.1-2build7_riscv64.deb ... Unpacking librtmp1:riscv64 (2.4+20151223.gitfa8646d.1-2build7) ... Selecting previously unselected package libssh-4:riscv64. Preparing to unpack .../40-libssh-4_0.10.6-2build2_riscv64.deb ... Unpacking libssh-4:riscv64 (0.10.6-2build2) ... Selecting previously unselected package libcurl3t64-gnutls:riscv64. Preparing to unpack .../41-libcurl3t64-gnutls_8.5.0-2ubuntu9_riscv64.deb ... Unpacking libcurl3t64-gnutls:riscv64 (8.5.0-2ubuntu9) ... Selecting previously unselected package libcurl4-gnutls-dev:riscv64. Preparing to unpack .../42-libcurl4-gnutls-dev_8.5.0-2ubuntu9_riscv64.deb ... Unpacking libcurl4-gnutls-dev:riscv64 (8.5.0-2ubuntu9) ... Selecting previously unselected package libdeflate0:riscv64. Preparing to unpack .../43-libdeflate0_1.19-1_riscv64.deb ... Unpacking libdeflate0:riscv64 (1.19-1) ... Selecting previously unselected package libdeflate-dev:riscv64. Preparing to unpack .../44-libdeflate-dev_1.19-1_riscv64.deb ... Unpacking libdeflate-dev:riscv64 (1.19-1) ... Selecting previously unselected package libhtscodecs2:riscv64. Preparing to unpack .../45-libhtscodecs2_1.6.0-1_riscv64.deb ... Unpacking libhtscodecs2:riscv64 (1.6.0-1) ... Selecting previously unselected package libhts3t64:riscv64. Preparing to unpack .../46-libhts3t64_1.19+ds-1.1build3_riscv64.deb ... Unpacking libhts3t64:riscv64 (1.19+ds-1.1build3) ... Selecting previously unselected package liblzma-dev:riscv64. Preparing to unpack .../47-liblzma-dev_5.6.1+really5.4.5-1_riscv64.deb ... Unpacking liblzma-dev:riscv64 (5.6.1+really5.4.5-1) ... Selecting previously unselected package libhts-dev:riscv64. Preparing to unpack .../48-libhts-dev_1.19+ds-1.1build3_riscv64.deb ... Unpacking libhts-dev:riscv64 (1.19+ds-1.1build3) ... Selecting previously unselected package libsparsehash-dev. Preparing to unpack .../49-libsparsehash-dev_2.0.3-2_all.deb ... Unpacking libsparsehash-dev (2.0.3-2) ... Selecting previously unselected package samtools. Preparing to unpack .../50-samtools_1.19.2-1build1_riscv64.deb ... Unpacking samtools (1.19.2-1build1) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../51-sbuild-build-depends-main-dummy_0.invalid.0_riscv64.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libhtscodecs2:riscv64 (1.6.0-1) ... Setting up libpipeline1:riscv64 (1.5.7-2) ... Setting up libmagic-mgc (1:5.45-3build1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.14.1ubuntu5) ... Setting up libbrotli1:riscv64 (1.1.0-2build2) ... Setting up libmagic1t64:riscv64 (1:5.45-3build1) ... Setting up libpsl5t64:riscv64 (0.21.2-1.1build1) ... Setting up libnghttp2-14:riscv64 (1.59.0-1build2) ... Setting up libdeflate0:riscv64 (1.19-1) ... Setting up gettext-base (0.21-14ubuntu1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3build1) ... Setting up libsparsehash-dev (2.0.3-2) ... Setting up libelf1t64:riscv64 (0.190-1.1build3) ... Setting up libdw1t64:riscv64 (0.190-1.1build3) ... Setting up libsasl2-modules-db:riscv64 (2.1.28+dfsg1-5ubuntu2) ... Setting up autotools-dev (20220109.1) ... Setting up librtmp1:riscv64 (2.4+20151223.gitfa8646d.1-2build7) ... Setting up libncurses6:riscv64 (6.4+20240113-1ubuntu1) ... Setting up autopoint (0.21-14ubuntu1) ... Setting up libsasl2-2:riscv64 (2.1.28+dfsg1-5ubuntu2) ... Setting up libssh-4:riscv64 (0.10.6-2build2) ... Setting up autoconf (2.71-3) ... Setting up liblzma-dev:riscv64 (5.6.1+really5.4.5-1) ... Setting up libicu74:riscv64 (74.2-1ubuntu1) ... Setting up zlib1g-dev:riscv64 (1:1.3.dfsg-3.1ubuntu2) ... Setting up dwz (0.15-1build6) ... Setting up libuchardet0:riscv64 (0.0.8-1) ... Setting up debugedit (1:5.0-5build1) ... Setting up libsub-override-perl (0.10-1) ... Setting up libdeflate-dev:riscv64 (1.19-1) ... Setting up libxml2:riscv64 (2.9.14+dfsg-1.3ubuntu3) ... Setting up libldap2:riscv64 (2.6.7+dfsg-1~exp1ubuntu7) ... Setting up automake (1:1.16.5-1.3ubuntu1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14ubuntu1) ... Setting up libtool (2.4.7-7) ... Setting up libcurl3t64-gnutls:riscv64 (8.5.0-2ubuntu9) ... Setting up libcurl4-gnutls-dev:riscv64 (8.5.0-2ubuntu9) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libbam-dev (0.1.19+dfsg-6ubuntu1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-3build2) ... Setting up libhts3t64:riscv64 (1.19+ds-1.1build3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhts-dev:riscv64 (1.19+ds-1.1build3) ... Setting up man-db (2.12.0-4build1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /usr/lib/systemd/system/man-db.timer. Setting up samtools (1.19.2-1build1) ... Setting up debhelper (13.14.1ubuntu5) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.39-0ubuntu8) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (riscv64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.5.0-26-generic #26.1~22.04.1-Ubuntu SMP Thu Mar 14 04:00:07 UTC 2024 riscv64 (riscv64) Toolchain package versions: binutils_2.42-4ubuntu2 dpkg-dev_1.22.6ubuntu6 g++-13_13.2.0-23ubuntu3 gcc-13_13.2.0-23ubuntu3 libc6-dev_2.39-0ubuntu8 libstdc++-13-dev_13.2.0-23ubuntu3 libstdc++6_14-20240315-1ubuntu1 linux-libc-dev_6.8.0-20.20 Package versions: adduser_3.137ubuntu1 advancecomp_2.5-1 apt_2.7.14build2 apt-utils_2.7.14build2 autoconf_2.71-3 automake_1:1.16.5-1.3ubuntu1 autopoint_0.21-14ubuntu1 autotools-dev_20220109.1 base-files_13ubuntu9 base-passwd_3.6.3 bash_5.2.21-2ubuntu4 bash-completion_1:2.11-8 binutils_2.42-4ubuntu2 binutils-common_2.42-4ubuntu2 binutils-riscv64-linux-gnu_2.42-4ubuntu2 bsdextrautils_2.39.3-9ubuntu4 bsdutils_1:2.39.3-9ubuntu4 build-essential_12.10ubuntu1 bzip2_1.0.8-5.1 ca-certificates_20240203 coreutils_9.4-3ubuntu5 cpp_4:13.2.0-7ubuntu1 cpp-13_13.2.0-23ubuntu3 cpp-13-riscv64-linux-gnu_13.2.0-23ubuntu3 cpp-riscv64-linux-gnu_4:13.2.0-7ubuntu1 dash_0.5.12-6ubuntu5 debconf_1.5.86 debconf-i18n_1.5.86 debhelper_13.14.1ubuntu5 debianutils_5.17build1 debugedit_1:5.0-5build1 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dpkg_1.22.6ubuntu6 dpkg-dev_1.22.6ubuntu6 dwz_0.15-1build6 e2fsprogs_1.47.0-2.4~exp1ubuntu3 fakeroot_1.33-1 file_1:5.45-3build1 findutils_4.9.0-5 g++_4:13.2.0-7ubuntu1 g++-13_13.2.0-23ubuntu3 g++-13-riscv64-linux-gnu_13.2.0-23ubuntu3 g++-riscv64-linux-gnu_4:13.2.0-7ubuntu1 gcc_4:13.2.0-7ubuntu1 gcc-13_13.2.0-23ubuntu3 gcc-13-base_13.2.0-23ubuntu3 gcc-13-riscv64-linux-gnu_13.2.0-23ubuntu3 gcc-14-base_14-20240315-1ubuntu1 gcc-riscv64-linux-gnu_4:13.2.0-7ubuntu1 gettext_0.21-14ubuntu1 gettext-base_0.21-14ubuntu1 gpg_2.4.4-2ubuntu16 gpg-agent_2.4.4-2ubuntu16 gpgconf_2.4.4-2ubuntu16 gpgv_2.4.4-2ubuntu16 grep_3.11-4 groff-base_1.23.0-3build2 gzip_1.12-1ubuntu2 hostname_3.23+nmu2ubuntu1 init_1.66ubuntu1 init-system-helpers_1.66ubuntu1 intltool-debian_0.35.0+20060710.6 krb5-locales_1.20.1-6ubuntu2 libacl1_2.3.2-1 libapparmor1_4.0.0-beta3-0ubuntu3 libapt-pkg6.0t64_2.7.14build2 libarchive-zip-perl_1.68-1 libargon2-1_0~20190702+dfsg-4 libasan8_14-20240315-1ubuntu1 libassuan0_2.5.6-1 libatomic1_14-20240315-1ubuntu1 libattr1_1:2.5.2-1 libaudit-common_1:3.1.2-2.1build1 libaudit1_1:3.1.2-2.1build1 libbam-dev_0.1.19+dfsg-6ubuntu1 libbinutils_2.42-4ubuntu2 libblkid1_2.39.3-9ubuntu4 libbrotli1_1.1.0-2build2 libbz2-1.0_1.0.8-5.1 libc-bin_2.39-0ubuntu8 libc-dev-bin_2.39-0ubuntu8 libc6_2.39-0ubuntu8 libc6-dev_2.39-0ubuntu8 libcap-ng0_0.8.4-2build2 libcap2_1:2.66-5ubuntu1 libcc1-0_14-20240315-1ubuntu1 libcom-err2_1.47.0-2.4~exp1ubuntu3 libcrypt-dev_1:4.4.36-4 libcrypt1_1:4.4.36-4 libcryptsetup12_2:2.7.0-1ubuntu3 libctf-nobfd0_2.42-4ubuntu2 libctf0_2.42-4ubuntu2 libcurl3t64-gnutls_8.5.0-2ubuntu9 libcurl4-gnutls-dev_8.5.0-2ubuntu9 libdb5.3t64_5.3.28+dfsg2-6build1 libdebconfclient0_0.271ubuntu3 libdebhelper-perl_13.14.1ubuntu5 libdeflate-dev_1.19-1 libdeflate0_1.19-1 libdevmapper1.02.1_2:1.02.185-3ubuntu3 libdpkg-perl_1.22.6ubuntu6 libdw1t64_0.190-1.1build3 libelf1t64_0.190-1.1build3 libext2fs2t64_1.47.0-2.4~exp1ubuntu3 libfakeroot_1.33-1 libfdisk1_2.39.3-9ubuntu4 libffi8_3.4.6-1 libfile-stripnondeterminism-perl_1.13.1-1 libgcc-13-dev_13.2.0-23ubuntu3 libgcc-s1_14-20240315-1ubuntu1 libgcrypt20_1.10.3-2 libgdbm-compat4t64_1.23-5.1build1 libgdbm6t64_1.23-5.1build1 libgmp10_2:6.3.0+dfsg-2ubuntu4 libgnutls30t64_3.8.3-1.1ubuntu3 libgomp1_14-20240315-1ubuntu1 libgpg-error-l10n_1.47-3build1 libgpg-error0_1.47-3build1 libgpm2_1.20.7-11 libgssapi-krb5-2_1.20.1-6ubuntu2 libhogweed6t64_3.9.1-2.2build1 libhts-dev_1.19+ds-1.1build3 libhts3t64_1.19+ds-1.1build3 libhtscodecs2_1.6.0-1 libicu74_74.2-1ubuntu1 libidn2-0_2.3.7-2 libip4tc2_1.8.10-3ubuntu1 libisl23_0.26-3 libjansson4_2.14-2build2 libjson-c5_0.17-1 libk5crypto3_1.20.1-6ubuntu2 libkeyutils1_1.6.3-3 libkmod2_31+20240202-2ubuntu5 libkrb5-3_1.20.1-6ubuntu2 libkrb5support0_1.20.1-6ubuntu2 libldap2_2.6.7+dfsg-1~exp1ubuntu7 liblocale-gettext-perl_1.07-6ubuntu5 liblockfile-bin_1.17-1build2 liblockfile1_1.17-1build2 liblz4-1_1.9.4-1 liblzma-dev_5.6.1+really5.4.5-1 liblzma5_5.6.1+really5.4.5-1 libmagic-mgc_1:5.45-3build1 libmagic1t64_1:5.45-3build1 libmd0_1.1.0-2 libmount1_2.39.3-9ubuntu4 libmpc3_1.3.1-1 libmpfr6_4.2.1-1 libncurses6_6.4+20240113-1ubuntu1 libncursesw6_6.4+20240113-1ubuntu1 libnettle8t64_3.9.1-2.2build1 libnghttp2-14_1.59.0-1build2 libnpth0t64_1.6-3.1build1 libnsl-dev_1.3.0-3build3 libnsl2_1.3.0-3build3 libnss-nis_3.1-0ubuntu6 libnss-nisplus_1.3-5build1 libp11-kit0_0.25.3-4ubuntu1 libpam-modules_1.5.3-5ubuntu4 libpam-modules-bin_1.5.3-5ubuntu4 libpam-runtime_1.5.3-5ubuntu4 libpam0g_1.5.3-5ubuntu4 libpcre2-8-0_10.42-4ubuntu1 libperl5.36_5.36.0-9ubuntu1 libperl5.38t64_5.38.2-3.2build1 libpipeline1_1.5.7-2 libpng16-16t64_1.6.43-5build1 libproc2-0_2:4.0.4-4ubuntu3 libpsl5t64_0.21.2-1.1build1 libreadline8t64_8.2-4build1 librtmp1_2.4+20151223.gitfa8646d.1-2build7 libsasl2-2_2.1.28+dfsg1-5ubuntu2 libsasl2-modules-db_2.1.28+dfsg1-5ubuntu2 libseccomp2_2.5.5-1ubuntu3 libselinux1_3.5-2ubuntu2 libsemanage-common_3.5-1build5 libsemanage2_3.5-1build5 libsepol2_3.5-2 libsframe1_2.42-4ubuntu2 libsmartcols1_2.39.3-9ubuntu4 libsparsehash-dev_2.0.3-2 libsqlite3-0_3.45.1-1ubuntu2 libss2_1.47.0-2.4~exp1ubuntu3 libssh-4_0.10.6-2build2 libssl3t64_3.0.13-0ubuntu3 libstdc++-13-dev_13.2.0-23ubuntu3 libstdc++6_14-20240315-1ubuntu1 libsub-override-perl_0.10-1 libsystemd-shared_255.4-1ubuntu6 libsystemd0_255.4-1ubuntu6 libtasn1-6_4.19.0-3 libtext-charwidth-perl_0.04-11build3 libtext-iconv-perl_1.7-8build3 libtext-wrapi18n-perl_0.06-10 libtinfo6_6.4+20240113-1ubuntu1 libtirpc-common_1.3.4+ds-1.1build1 libtirpc-dev_1.3.4+ds-1.1build1 libtirpc3t64_1.3.4+ds-1.1build1 libtool_2.4.7-7 libubsan1_14-20240315-1ubuntu1 libuchardet0_0.0.8-1 libudev1_255.4-1ubuntu6 libunistring2_1.0-2 libunistring5_1.1-2 libuuid1_2.39.3-9ubuntu4 libxml2_2.9.14+dfsg-1.3ubuntu3 libxxhash0_0.8.2-2 libzstd1_1.5.5+dfsg2-2 linux-libc-dev_6.8.0-20.20 lockfile-progs_0.1.19build1 login_1:4.13+dfsg1-4ubuntu1 logsave_1.47.0-2.4~exp1ubuntu3 lto-disabled-list_47 m4_1.4.19-4 make_4.3-4.1build1 man-db_2.12.0-4build1 mawk_1.3.4.20240123-1 mount_2.39.3-9ubuntu4 ncurses-base_6.4+20240113-1ubuntu1 ncurses-bin_6.4+20240113-1ubuntu1 openssl_3.0.13-0ubuntu3 optipng_0.7.8+ds-1build2 passwd_1:4.13+dfsg1-4ubuntu1 patch_2.7.6-7build2 perl_5.38.2-3.2build1 perl-base_5.38.2-3.2build1 perl-modules-5.36_5.36.0-9ubuntu1 perl-modules-5.38_5.38.2-3.2build1 pinentry-curses_1.2.1-3ubuntu5 pkgbinarymangler_154 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3.1 procps_2:4.0.4-4ubuntu3 psmisc_23.7-1build1 readline-common_8.2-4build1 rpcsvc-proto_1.4.2-0ubuntu6 samtools_1.19.2-1build1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.22 systemd_255.4-1ubuntu6 systemd-dev_255.4-1ubuntu6 systemd-sysv_255.4-1ubuntu6 sysvinit-utils_3.08-6ubuntu2 tar_1.35+dfsg-3 tzdata_2024a-1ubuntu1 ubuntu-keyring_2023.11.28.1 util-linux_2.39.3-9ubuntu4 uuid-runtime_2.39.3-9ubuntu4 xz-utils_5.6.1+really5.4.5-1 zlib1g_1:1.3.dfsg-3.1ubuntu2 zlib1g-dev_1:1.3.dfsg-3.1ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: stacks Binary: stacks Architecture: any Version: 2.66+dfsg-1build2 Maintainer: Ubuntu Developers Uploaders: Tim Booth , Andreas Tille Homepage: https://creskolab.uoregon.edu/stacks/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/stacks Vcs-Git: https://salsa.debian.org/med-team/stacks.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), zlib1g-dev, libbam-dev, libsparsehash-dev, samtools, libhts-dev Package-List: stacks deb science optional arch=any Checksums-Sha1: 385fa639bf9e6404984e3f92390b91f12f70477d 339220 stacks_2.66+dfsg.orig.tar.xz a66616b96e268ac5f7aba333b0390a7b7e5aeb3f 12284 stacks_2.66+dfsg-1build2.debian.tar.xz Checksums-Sha256: ebfe03f3ff69f9e398e891ae055c75d09f0f5e46a4094be5b75268eae410cf95 339220 stacks_2.66+dfsg.orig.tar.xz c6ea40dd7e49c14f3963a2bed407336dd6544e30bb6a25871ed2f1775c82c5c7 12284 stacks_2.66+dfsg-1build2.debian.tar.xz Files: ad4aa860ad9e955b5add40699f74ee1d 339220 stacks_2.66+dfsg.orig.tar.xz 2f24be38d2ca98659aab99f3e2997158 12284 stacks_2.66+dfsg-1build2.debian.tar.xz Original-Maintainer: Debian Med Packaging Team -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEoIn7Nqr72tWswTJQafeQFxohCYQFAmYKaoQACgkQafeQFxoh CYSGuA/9HSM+C2ilVdsFd9boaOpqQIxzGIE93+amBnDhLEyHFe0GCQX6Ce+on5Ld Qm01Ia8Q/potmeuOEMxeiklAMekULkFlAlR5dfZQQzn1ewm0ugGThmaosKrO51jM hp4BcxVRF93IfdMJAQjxDYYvaEM0Z4qpOWHMt92Tr9wowSuux/71tLENK/ylCRQn dqpaaEIKOKTOvGwmMw6N9qDjjV0foV9VHITMV4RcZbP7sjTE5+mYf4/++RAO6SYX y6a0jacQfbQ0karWHVQoYV+XT31PKOHGmFH6ItCanM4iAnMw3Pt388b7NOLcQf9b op0oLgtp9yd27J+wKe5pQOGBh8/HzNa8WQeCQ7a3pN7K3F/vVDcK7s6BQGVO8uLQ KrCONzJ4xBHEG4cs+N1yt9fQTwjhw0A6UTPMA9KhDMiKk9iwkxzT8kY8/VcqTYUZ 0X5BJ6anurLtJ44GPB7HwH/6RTsCxi2H/uDgPx+pBu+fEykmBKcu5ieaZiF4Fuxj jRbs2unHZ/tG737c9ySMjjR3EvPigYtZyuD3qPk26Pf1+jo1I8ORbw05U6TDHpfd aHotmki9bUGgTAw9cazje2an2AhkIEu5VG7WcAC9ysDZT7n0hJjga7tgAocf+f+u 0NpCvQ1eXOb1iowf9keyT17YzPpeO9tz0c5SasIqMlfUNZLyeJY= =aneO -----END PGP SIGNATURE----- gpgv: Signature made Mon Apr 1 08:04:20 2024 UTC gpgv: using RSA key A089FB36AAFBDAD5ACC1325069F790171A210984 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./stacks_2.66+dfsg-1build2.dsc: no acceptable signature found dpkg-source: info: extracting stacks in /<> dpkg-source: info: unpacking stacks_2.66+dfsg.orig.tar.xz dpkg-source: info: unpacking stacks_2.66+dfsg-1build2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying RisR.patch dpkg-source: info: applying script-exe-paths dpkg-source: info: applying use_debian_packaged_htslib.patch dpkg-source: info: applying fix_spelling_errors.patch dpkg-source: info: applying change_program_exit_to_success.patch dpkg-source: info: applying offer_help_option_for_stacks_gdb.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-28012738 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-28012738 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-28012738 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package stacks dpkg-buildpackage: info: source version 2.66+dfsg-1build2 dpkg-buildpackage: info: source distribution noble dpkg-source --before-build . dpkg-buildpackage: info: host architecture riscv64 debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/<>' dh_clean rm -f ./constants.php make[1]: Leaving directory '/<>' debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a configure.ac:28: warning: The macro `AC_HEADER_STDC' is obsolete. configure.ac:28: You should run autoupdate. ./lib/autoconf/headers.m4:704: AC_HEADER_STDC is expanded from... configure.ac:28: the top level configure.ac:20: installing 'config/ar-lib' configure.ac:15: installing 'config/compile' configure.ac:42: installing 'config/config.guess' configure.ac:42: installing 'config/config.sub' configure.ac:7: installing 'config/install-sh' configure.ac:7: installing 'config/missing' Makefile.am: installing 'config/depcomp' parallel-tests: installing 'config/test-driver' debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- --enable-sparsehash --enable-bam \ --with-bam-include-path=/usr/include/samtools \ --with-bam-lib-path=/usr/lib ./configure --build=riscv64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/riscv64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-sparsehash --enable-bam --with-bam-include-path=/usr/include/samtools --with-bam-lib-path=/usr/lib checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking whether make supports the include directive... yes (GNU style) checking dependency style of g++... none checking for gcc... gcc checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking whether g++ supports C++11 features by default... yes checking for ranlib... ranlib checking for ar... ar checking the archiver (ar) interface... ar checking for omp_set_num_threads in -lgomp... yes checking for gzread in -lz... yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for float.h... yes checking for limits.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for gcc option to support OpenMP... -fopenmp checking for _Bool... yes checking for stdbool.h that conforms to C99... yes checking for an ANSI C-conforming const... yes checking for size_t... yes checking whether closedir returns void... no checking build system type... riscv64-unknown-linux-gnu checking host system type... riscv64-unknown-linux-gnu checking for GNU libc compatible malloc... yes checking for GNU libc compatible realloc... yes checking for floor... no checking for memset... yes checking for pow... no checking for sqrt... no checking for clock_gettime... yes checking for functional regular expressions... yes checking for gawk... (cached) mawk checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating config.h config.status: executing depfiles commands make[1]: Leaving directory '/<>' dh_auto_build -a make -j4 make[1]: Entering directory '/<>' make all-recursive make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/stacks-2.66+dfsg-1build2 -c -o src/ustacks.o src/ustacks.cc g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/stacks-2.66+dfsg-1build2 -c -o src/aln_utils.o src/aln_utils.cc g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/stacks-2.66+dfsg-1build2 -c -o src/BamI.o src/BamI.cc g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/stacks-2.66+dfsg-1build2 -c -o src/catalog_utils.o src/catalog_utils.cc g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/stacks-2.66+dfsg-1build2 -c -o src/cmb.o src/cmb.cc g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/stacks-2.66+dfsg-1build2 -c -o src/constants.o src/constants.cc g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/stacks-2.66+dfsg-1build2 -c -o src/DNANSeq.o src/DNANSeq.cc g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/stacks-2.66+dfsg-1build2 -c -o src/DNASeq4.o src/DNASeq4.cc g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/stacks-2.66+dfsg-1build2 -c -o src/DNASeq.o src/DNASeq.cc g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/stacks-2.66+dfsg-1build2 -c -o src/gzFasta.o src/gzFasta.cc g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/stacks-2.66+dfsg-1build2 -c -o src/input.o src/input.cc g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/stacks-2.66+dfsg-1build2 -c -o src/kmers.o src/kmers.cc g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/stacks-2.66+dfsg-1build2 -c -o src/locus.o src/locus.cc g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/stacks-2.66+dfsg-1build2 -c -o src/log_utils.o src/log_utils.cc g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/stacks-2.66+dfsg-1build2 -c -o src/MetaPopInfo.o src/MetaPopInfo.cc g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/stacks-2.66+dfsg-1build2 -c -o src/models.o src/models.cc g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/stacks-2.66+dfsg-1build2 -c -o src/mstack.o src/mstack.cc src/MetaPopInfo.cc: In member function ‘void MetaPopInfo::fill_pop_indexes(std::map >&) const’: src/MetaPopInfo.cc:427:30: warning: narrowing conversion of ‘i’ from ‘std::size_t’ {aka ‘long unsigned int’} to ‘int’ [-Wnarrowing] 427 | pop_indexes.insert( {i, {pops_[i].first_sample, pops_[i].last_sample}} ); | ^ g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/stacks-2.66+dfsg-1build2 -c -o src/mst.o src/mst.cc g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/stacks-2.66+dfsg-1build2 -c -o src/nucleotides.o src/nucleotides.cc g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/stacks-2.66+dfsg-1build2 -c -o src/renz.o src/renz.cc g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/stacks-2.66+dfsg-1build2 -c -o src/Seq.o src/Seq.cc g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/stacks-2.66+dfsg-1build2 -c -o src/sql_utilities.o src/sql_utilities.cc g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/stacks-2.66+dfsg-1build2 -c -o src/stacks.o src/stacks.cc g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/stacks-2.66+dfsg-1build2 -c -o src/utils.o src/utils.cc g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/stacks-2.66+dfsg-1build2 -c -o src/Vcf.o src/Vcf.cc g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/stacks-2.66+dfsg-1build2 -c -o src/cstacks.o src/cstacks.cc g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/stacks-2.66+dfsg-1build2 -c -o src/sstacks.o src/sstacks.cc g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/stacks-2.66+dfsg-1build2 -c -o src/process_radtags.o src/process_radtags.cc g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/stacks-2.66+dfsg-1build2 -c -o src/clean.o src/clean.cc g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/stacks-2.66+dfsg-1build2 -c -o src/file_io.o src/file_io.cc g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/stacks-2.66+dfsg-1build2 -c -o src/write.o src/write.cc g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/stacks-2.66+dfsg-1build2 -c -o src/process_shortreads.o src/process_shortreads.cc g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/stacks-2.66+dfsg-1build2 -c -o src/kmer_filter.o src/kmer_filter.cc g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/stacks-2.66+dfsg-1build2 -c -o src/clone_filter.o src/clone_filter.cc g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/stacks-2.66+dfsg-1build2 -c -o src/populations.o src/populations.cc g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/stacks-2.66+dfsg-1build2 -c -o src/bootstrap.o src/bootstrap.cc g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/stacks-2.66+dfsg-1build2 -c -o src/export_formats.o src/export_formats.cc g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/stacks-2.66+dfsg-1build2 -c -o src/mapping_utils.o src/mapping_utils.cc g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/stacks-2.66+dfsg-1build2 -c -o src/genotype_dictionaries.o src/genotype_dictionaries.cc g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/stacks-2.66+dfsg-1build2 -c -o src/PopSum.o src/PopSum.cc g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/stacks-2.66+dfsg-1build2 -c -o src/Hwp.o src/Hwp.cc g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/stacks-2.66+dfsg-1build2 -c -o src/phasedstacks.o src/phasedstacks.cc g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/stacks-2.66+dfsg-1build2 -c -o src/tsv2bam.o src/tsv2bam.cc g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/stacks-2.66+dfsg-1build2 -c -o src/gstacks.o src/gstacks.cc g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/stacks-2.66+dfsg-1build2 -c -o src/debruijn.o src/debruijn.cc g++ -DHAVE_CONFIG_H -I. -fopenmp -I./htslib -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/stacks-2.66+dfsg-1build2 -c -o src/SuffixTree.o src/SuffixTree.cc rm -f libcore.a ar cru libcore.a src/aln_utils.o src/BamI.o src/catalog_utils.o src/cmb.o src/constants.o src/DNANSeq.o src/DNASeq4.o src/DNASeq.o src/gzFasta.o src/input.o src/kmers.o src/locus.o src/log_utils.o src/MetaPopInfo.o src/models.o src/mstack.o src/mst.o src/nucleotides.o src/renz.o src/Seq.o src/sql_utilities.o src/stacks.o src/utils.o src/Vcf.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libcore.a rm -f libclean.a ar cru libclean.a src/clean.o src/file_io.o src/write.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libclean.a rm -f libpop.a ar cru libpop.a src/bootstrap.o src/export_formats.o src/mapping_utils.o src/genotype_dictionaries.o src/PopSum.o src/Hwp.o ar: `u' modifier ignored since `D' is the default (see `U') g++ -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/stacks-2.66+dfsg-1build2 -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o phasedstacks src/phasedstacks.o -lhts libcore.a -lz -lgomp ranlib libpop.a g++ -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/stacks-2.66+dfsg-1build2 -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o ustacks src/ustacks.o -lhts libcore.a -lz -lgomp g++ -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/stacks-2.66+dfsg-1build2 -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o cstacks src/cstacks.o -lhts libcore.a -lz -lgomp g++ -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/stacks-2.66+dfsg-1build2 -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o sstacks src/sstacks.o -lhts libcore.a -lz -lgomp g++ -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/stacks-2.66+dfsg-1build2 -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o process_radtags src/process_radtags.o -lhts libcore.a libclean.a -lz -lgomp g++ -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/stacks-2.66+dfsg-1build2 -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o process_shortreads src/process_shortreads.o -lhts libcore.a libclean.a -lz -lgomp g++ -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/stacks-2.66+dfsg-1build2 -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o kmer_filter src/kmer_filter.o -lhts libcore.a libclean.a -lz -lgomp g++ -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/stacks-2.66+dfsg-1build2 -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o clone_filter src/clone_filter.o -lhts libcore.a libclean.a -lz -lgomp g++ -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/stacks-2.66+dfsg-1build2 -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o populations src/populations.o -lhts libcore.a libpop.a -lz -lgomp g++ -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/stacks-2.66+dfsg-1build2 -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o tsv2bam src/tsv2bam.o -lhts libcore.a -lz -lgomp g++ -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/stacks-2.66+dfsg-1build2 -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o gstacks src/gstacks.o src/debruijn.o src/SuffixTree.o -lhts libcore.a -lz -lgomp make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/<>' dh_auto_install --no-parallel make -j1 install DESTDIR=/<>/stacks-2.66\+dfsg/debian/stacks AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[4]: Entering directory '/<>' /usr/bin/mkdir -p '/<>/debian/stacks/usr/bin' /usr/bin/install -c ustacks cstacks sstacks process_radtags process_shortreads kmer_filter clone_filter populations phasedstacks tsv2bam gstacks '/<>/debian/stacks/usr/bin' /usr/bin/mkdir -p '/<>/debian/stacks/usr/bin' /usr/bin/install -c scripts/denovo_map.pl scripts/ref_map.pl scripts/stacks-integrate-alignments scripts/stacks-dist-extract scripts/stacks-gdb scripts/stacks-samtools-tview scripts/stacks-count-reads-per-sample-per-locus scripts/stacks-hist2d-loci-samples-coverage '/<>/debian/stacks/usr/bin' make install-data-hook make[5]: Entering directory '/<>' sed -e 's,_VERSION_,2.66,' -e 's,_BINDIR_,/usr/libexec/stacks/bin/,g' -e 's,_PKGDATADIR_,/usr/share/stacks/,g' /<>/debian/stacks/usr/bin/denovo_map.pl > /<>/debian/stacks/usr/bin/denovo_map.pl.subst mv /<>/debian/stacks/usr/bin/denovo_map.pl.subst /<>/debian/stacks/usr/bin/denovo_map.pl chmod +x /<>/debian/stacks/usr/bin/denovo_map.pl sed -e 's,_VERSION_,2.66,' -e 's,_BINDIR_,/usr/libexec/stacks/bin/,g' -e 's,_PKGDATADIR_,/usr/share/stacks/,g' /<>/debian/stacks/usr/bin/ref_map.pl > /<>/debian/stacks/usr/bin/ref_map.pl.subst mv /<>/debian/stacks/usr/bin/ref_map.pl.subst /<>/debian/stacks/usr/bin/ref_map.pl chmod +x /<>/debian/stacks/usr/bin/ref_map.pl sed -i.bkp -e 's,_VERSION_,2.66,' /<>/debian/stacks/usr/bin/stacks-integrate-alignments sed -i.bkp -e 's,_VERSION_,2.66,' /<>/debian/stacks/usr/bin/stacks-samtools-tview rm -f /<>/debian/stacks/usr/bin/stacks-integrate-alignments.bkp rm -f /<>/debian/stacks/usr/bin/stacks-samtools-tview.bkp chmod +x /<>/debian/stacks/usr/bin/stacks-integrate-alignments chmod +x /<>/debian/stacks/usr/bin/stacks-dist-extract chmod +x /<>/debian/stacks/usr/bin/stacks-gdb make[5]: Leaving directory '/<>' make[4]: Leaving directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_install make[1]: Entering directory '/<>' mkdir -p debian/stacks/usr/libexec/stacks mv debian/stacks/usr/bin debian/stacks/usr/libexec/stacks cd debian/stacks/usr/libexec/stacks/bin && \ for f in *.pl ; do \ ln -s "$f" "`basename $f .pl`" ; \ sed -i '1s?^#!/usr/bin/env.*perl?#!/usr/bin/perl?' $f ; \ done dh_install make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_perl -a debian/rules override_dh_link make[1]: Entering directory '/<>' dh_link mkdir -p debian/stacks/usr/libexec/debian-med/bin cd debian/stacks/usr/libexec/debian-med/bin && \ for f in `ls /<>/debian/stacks/usr/libexec/stacks/bin` ; do \ ln -s ../../stacks/bin/$f ; \ done make[1]: Leaving directory '/<>' dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a debugedit: debian/stacks/usr/libexec/stacks/bin/populations: Unknown DWARF DW_FORM_0x1f21 302bde75edec65ee6c925fba1f3f96e129f26e18 debugedit: debian/stacks/usr/libexec/stacks/bin/clone_filter: Unknown DWARF DW_FORM_0x1f21 f2634f6304315b78601b29e06bf5b9dc6adf6d07 debugedit: debian/stacks/usr/libexec/stacks/bin/kmer_filter: Unknown DWARF DW_FORM_0x1f21 963b149fc0d956b8cb89eb7b12e5ca3576b3b280 debugedit: debian/stacks/usr/libexec/stacks/bin/sstacks: Unknown DWARF DW_FORM_0x1f21 6d6c9a2d5069a024ee26dafff131da0031e16a30 debugedit: debian/stacks/usr/libexec/stacks/bin/tsv2bam: Unknown DWARF DW_FORM_0x1f21 9c6bceacbc0f94cfde542e8df21d850cbf07d5ad debugedit: debian/stacks/usr/libexec/stacks/bin/phasedstacks: Unknown DWARF DW_FORM_0x1f20 c7aec76f998520bf8dc21ed13900d148932f7a2e debugedit: debian/stacks/usr/libexec/stacks/bin/gstacks: Unknown DWARF DW_FORM_0x1f21 b9833950ccb3ac4446d7f4f1953727c1d50c06df debugedit: debian/stacks/usr/libexec/stacks/bin/process_shortreads: Unknown DWARF DW_FORM_0x1f20 3f6c1ce76f1692bfdc6441b531e2544e606f5dc1 debugedit: debian/stacks/usr/libexec/stacks/bin/cstacks: Unknown DWARF DW_FORM_0x1f20 80e0c5188b3e2cf5f5ec158a4d479af9de30194c debugedit: debian/stacks/usr/libexec/stacks/bin/process_radtags: Unknown DWARF DW_FORM_0x1f20 8430763b17561988484ee828764778469e507b1c debugedit: debian/stacks/usr/libexec/stacks/bin/ustacks: Unknown DWARF DW_FORM_0x1f20 643da32d9fce915692d0b0ca7db9a5f31c195b5f dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-riscv64-lp64d.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-riscv64-lp64d.so.1.usr-is-merged dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: package stacks: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package stacks: substitution variable ${perl:Depends} unused, but is defined dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 154 INFO: pkgstriptranslations version 154 pkgstriptranslations: processing stacks (in debian/stacks); do_strip: , oemstrip: pkgstriptranslations: processing stacks-dbgsym (in debian/.debhelper/stacks/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/stacks/DEBIAN/control, package stacks, directory debian/stacks pkgstripfiles: processing control file: debian/.debhelper/stacks/dbgsym-root/DEBIAN/control, package stacks-dbgsym, directory debian/.debhelper/stacks/dbgsym-root dpkg-deb: building package 'stacks-dbgsym' in 'debian/.debhelper/scratch-space/build-stacks/stacks-dbgsym_2.66+dfsg-1build2_riscv64.deb'. pkgstripfiles: Running PNG optimization (using 4 cpus) for package stacks ... pkgstripfiles: No PNG files. dpkg-deb: building package 'stacks' in '../stacks_2.66+dfsg-1build2_riscv64.deb'. Renaming stacks-dbgsym_2.66+dfsg-1build2_riscv64.deb to stacks-dbgsym_2.66+dfsg-1build2_riscv64.ddeb dpkg-genbuildinfo --build=any -O../stacks_2.66+dfsg-1build2_riscv64.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../stacks_2.66+dfsg-1build2_riscv64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2024-04-02T13:06:04Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ stacks_2.66+dfsg-1build2_riscv64.changes: ----------------------------------------- Format: 1.8 Date: Mon, 01 Apr 2024 19:04:19 +1100 Source: stacks Binary: stacks Built-For-Profiles: noudeb Architecture: riscv64 Version: 2.66+dfsg-1build2 Distribution: noble-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: William Grant Description: stacks - pipeline for building loci from short-read DNA sequences Changes: stacks (2.66+dfsg-1build2) noble; urgency=medium . * No-change rebuild for CVE-2024-3094 Checksums-Sha1: 127e73a7e0c55b739cc8d7a077430bab0b08c9db 19878474 stacks-dbgsym_2.66+dfsg-1build2_riscv64.ddeb aff3acffe4def3dc4a4f7973df22a28a2fd01d13 6884 stacks_2.66+dfsg-1build2_riscv64.buildinfo 9ded8106b9aba26492ff1397371f9ecd354eeb58 1239506 stacks_2.66+dfsg-1build2_riscv64.deb Checksums-Sha256: 7b7b373b19f96890d641c0116182e6f20f87d21d88979380f0163a91287cb0b7 19878474 stacks-dbgsym_2.66+dfsg-1build2_riscv64.ddeb ac8ae921dfbec31febe46c7d71edb224314fb8a6171fc8a417b19b1334e5627a 6884 stacks_2.66+dfsg-1build2_riscv64.buildinfo 1a307279d4113657db025a49ab133ca6b17c5e99b59ba7efe7c3565776c14433 1239506 stacks_2.66+dfsg-1build2_riscv64.deb Files: 3805ad5ea4594c7269c8ddd0db40e2d5 19878474 debug optional stacks-dbgsym_2.66+dfsg-1build2_riscv64.ddeb d56574181f89efd1db3e78564553786a 6884 science optional stacks_2.66+dfsg-1build2_riscv64.buildinfo 8055821479fa878aa1c75ce9d3654e0f 1239506 science optional stacks_2.66+dfsg-1build2_riscv64.deb Original-Maintainer: Debian Med Packaging Team /<>/stacks_2.66+dfsg-1build2_riscv64.changes.new could not be renamed to /<>/stacks_2.66+dfsg-1build2_riscv64.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: stacks Binary: stacks stacks-dbgsym Architecture: riscv64 Version: 2.66+dfsg-1build2 Checksums-Md5: 3805ad5ea4594c7269c8ddd0db40e2d5 19878474 stacks-dbgsym_2.66+dfsg-1build2_riscv64.ddeb 8055821479fa878aa1c75ce9d3654e0f 1239506 stacks_2.66+dfsg-1build2_riscv64.deb Checksums-Sha1: 127e73a7e0c55b739cc8d7a077430bab0b08c9db 19878474 stacks-dbgsym_2.66+dfsg-1build2_riscv64.ddeb 9ded8106b9aba26492ff1397371f9ecd354eeb58 1239506 stacks_2.66+dfsg-1build2_riscv64.deb Checksums-Sha256: 7b7b373b19f96890d641c0116182e6f20f87d21d88979380f0163a91287cb0b7 19878474 stacks-dbgsym_2.66+dfsg-1build2_riscv64.ddeb 1a307279d4113657db025a49ab133ca6b17c5e99b59ba7efe7c3565776c14433 1239506 stacks_2.66+dfsg-1build2_riscv64.deb Build-Origin: Ubuntu Build-Architecture: riscv64 Build-Date: Tue, 02 Apr 2024 13:05:55 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3ubuntu1), autopoint (= 0.21-14ubuntu1), autotools-dev (= 20220109.1), base-files (= 13ubuntu9), base-passwd (= 3.6.3), bash (= 5.2.21-2ubuntu4), binutils (= 2.42-4ubuntu2), binutils-common (= 2.42-4ubuntu2), binutils-riscv64-linux-gnu (= 2.42-4ubuntu2), bsdextrautils (= 2.39.3-9ubuntu4), bsdutils (= 1:2.39.3-9ubuntu4), build-essential (= 12.10ubuntu1), bzip2 (= 1.0.8-5.1), coreutils (= 9.4-3ubuntu5), cpp (= 4:13.2.0-7ubuntu1), cpp-13 (= 13.2.0-23ubuntu3), cpp-13-riscv64-linux-gnu (= 13.2.0-23ubuntu3), cpp-riscv64-linux-gnu (= 4:13.2.0-7ubuntu1), dash (= 0.5.12-6ubuntu5), debconf (= 1.5.86), debhelper (= 13.14.1ubuntu5), debianutils (= 5.17build1), debugedit (= 1:5.0-5build1), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.10-1), dpkg (= 1.22.6ubuntu6), dpkg-dev (= 1.22.6ubuntu6), dwz (= 0.15-1build6), file (= 1:5.45-3build1), findutils (= 4.9.0-5), g++ (= 4:13.2.0-7ubuntu1), g++-13 (= 13.2.0-23ubuntu3), g++-13-riscv64-linux-gnu (= 13.2.0-23ubuntu3), g++-riscv64-linux-gnu (= 4:13.2.0-7ubuntu1), gcc (= 4:13.2.0-7ubuntu1), gcc-13 (= 13.2.0-23ubuntu3), gcc-13-base (= 13.2.0-23ubuntu3), gcc-13-riscv64-linux-gnu (= 13.2.0-23ubuntu3), gcc-14-base (= 14-20240315-1ubuntu1), gcc-riscv64-linux-gnu (= 4:13.2.0-7ubuntu1), gettext (= 0.21-14ubuntu1), gettext-base (= 0.21-14ubuntu1), grep (= 3.11-4), groff-base (= 1.23.0-3build2), gzip (= 1.12-1ubuntu2), hostname (= 3.23+nmu2ubuntu1), init-system-helpers (= 1.66ubuntu1), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-1), libarchive-zip-perl (= 1.68-1), libasan8 (= 14-20240315-1ubuntu1), libatomic1 (= 14-20240315-1ubuntu1), libattr1 (= 1:2.5.2-1), libaudit-common (= 1:3.1.2-2.1build1), libaudit1 (= 1:3.1.2-2.1build1), libbam-dev (= 0.1.19+dfsg-6ubuntu1), libbinutils (= 2.42-4ubuntu2), libblkid1 (= 2.39.3-9ubuntu4), libbrotli1 (= 1.1.0-2build2), libbz2-1.0 (= 1.0.8-5.1), libc-bin (= 2.39-0ubuntu8), libc-dev-bin (= 2.39-0ubuntu8), libc6 (= 2.39-0ubuntu8), libc6-dev (= 2.39-0ubuntu8), libcap-ng0 (= 0.8.4-2build2), libcap2 (= 1:2.66-5ubuntu1), libcc1-0 (= 14-20240315-1ubuntu1), libcom-err2 (= 1.47.0-2.4~exp1ubuntu3), libcrypt-dev (= 1:4.4.36-4), libcrypt1 (= 1:4.4.36-4), libctf-nobfd0 (= 2.42-4ubuntu2), libctf0 (= 2.42-4ubuntu2), libcurl3t64-gnutls (= 8.5.0-2ubuntu9), libcurl4-gnutls-dev (= 8.5.0-2ubuntu9), libdb5.3t64 (= 5.3.28+dfsg2-6build1), libdebconfclient0 (= 0.271ubuntu3), libdebhelper-perl (= 13.14.1ubuntu5), libdeflate-dev (= 1.19-1), libdeflate0 (= 1.19-1), libdpkg-perl (= 1.22.6ubuntu6), libdw1t64 (= 0.190-1.1build3), libelf1t64 (= 0.190-1.1build3), libffi8 (= 3.4.6-1), libfile-stripnondeterminism-perl (= 1.13.1-1), libgcc-13-dev (= 13.2.0-23ubuntu3), libgcc-s1 (= 14-20240315-1ubuntu1), libgcrypt20 (= 1.10.3-2), libgdbm-compat4t64 (= 1.23-5.1build1), libgdbm6t64 (= 1.23-5.1build1), libgmp10 (= 2:6.3.0+dfsg-2ubuntu4), libgnutls30t64 (= 3.8.3-1.1ubuntu3), libgomp1 (= 14-20240315-1ubuntu1), libgpg-error0 (= 1.47-3build1), libgssapi-krb5-2 (= 1.20.1-6ubuntu2), libhogweed6t64 (= 3.9.1-2.2build1), libhts-dev (= 1.19+ds-1.1build3), libhts3t64 (= 1.19+ds-1.1build3), libhtscodecs2 (= 1.6.0-1), libicu74 (= 74.2-1ubuntu1), libidn2-0 (= 2.3.7-2), libisl23 (= 0.26-3), libjansson4 (= 2.14-2build2), libk5crypto3 (= 1.20.1-6ubuntu2), libkeyutils1 (= 1.6.3-3), libkrb5-3 (= 1.20.1-6ubuntu2), libkrb5support0 (= 1.20.1-6ubuntu2), libldap2 (= 2.6.7+dfsg-1~exp1ubuntu7), liblz4-1 (= 1.9.4-1), liblzma-dev (= 5.6.1+really5.4.5-1), liblzma5 (= 5.6.1+really5.4.5-1), libmagic-mgc (= 1:5.45-3build1), libmagic1t64 (= 1:5.45-3build1), libmd0 (= 1.1.0-2), libmount1 (= 2.39.3-9ubuntu4), libmpc3 (= 1.3.1-1), libmpfr6 (= 4.2.1-1), libncurses6 (= 6.4+20240113-1ubuntu1), libnettle8t64 (= 3.9.1-2.2build1), libnghttp2-14 (= 1.59.0-1build2), libp11-kit0 (= 0.25.3-4ubuntu1), libpam-modules (= 1.5.3-5ubuntu4), libpam-modules-bin (= 1.5.3-5ubuntu4), libpam-runtime (= 1.5.3-5ubuntu4), libpam0g (= 1.5.3-5ubuntu4), libpcre2-8-0 (= 10.42-4ubuntu1), libperl5.38t64 (= 5.38.2-3.2build1), libpipeline1 (= 1.5.7-2), libpsl5t64 (= 0.21.2-1.1build1), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build7), libsasl2-2 (= 2.1.28+dfsg1-5ubuntu2), libsasl2-modules-db (= 2.1.28+dfsg1-5ubuntu2), libselinux1 (= 3.5-2ubuntu2), libsframe1 (= 2.42-4ubuntu2), libsmartcols1 (= 2.39.3-9ubuntu4), libsparsehash-dev (= 2.0.3-2), libssh-4 (= 0.10.6-2build2), libssl3t64 (= 3.0.13-0ubuntu3), libstdc++-13-dev (= 13.2.0-23ubuntu3), libstdc++6 (= 14-20240315-1ubuntu1), libsub-override-perl (= 0.10-1), libsystemd0 (= 255.4-1ubuntu6), libtasn1-6 (= 4.19.0-3), libtinfo6 (= 6.4+20240113-1ubuntu1), libtool (= 2.4.7-7), libubsan1 (= 14-20240315-1ubuntu1), libuchardet0 (= 0.0.8-1), libudev1 (= 255.4-1ubuntu6), libunistring5 (= 1.1-2), libuuid1 (= 2.39.3-9ubuntu4), libxml2 (= 2.9.14+dfsg-1.3ubuntu3), libzstd1 (= 1.5.5+dfsg2-2), linux-libc-dev (= 6.8.0-20.20), login (= 1:4.13+dfsg1-4ubuntu1), lto-disabled-list (= 47), m4 (= 1.4.19-4), make (= 4.3-4.1build1), man-db (= 2.12.0-4build1), mawk (= 1.3.4.20240123-1), ncurses-base (= 6.4+20240113-1ubuntu1), ncurses-bin (= 6.4+20240113-1ubuntu1), patch (= 2.7.6-7build2), perl (= 5.38.2-3.2build1), perl-base (= 5.38.2-3.2build1), perl-modules-5.38 (= 5.38.2-3.2build1), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.2-0ubuntu6), samtools (= 1.19.2-1build1), sed (= 4.9-2), sensible-utils (= 0.0.22), sysvinit-utils (= 3.08-6ubuntu2), tar (= 1.35+dfsg-3), util-linux (= 2.39.3-9ubuntu4), xz-utils (= 5.6.1+really5.4.5-1), zlib1g (= 1:1.3.dfsg-3.1ubuntu2), zlib1g-dev (= 1:1.3.dfsg-3.1ubuntu2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1711958659" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ stacks_2.66+dfsg-1build2_riscv64.deb ------------------------------------ new Debian package, version 2.0. size 1239506 bytes: control archive=1514 bytes. 1081 bytes, 21 lines control 1648 bytes, 23 lines md5sums Package: stacks Version: 2.66+dfsg-1build2 Architecture: riscv64 Maintainer: Ubuntu Developers Installed-Size: 4637 Depends: libc6 (>= 2.38), libgcc-s1 (>= 3.4), libgomp1 (>= 6), libhts3t64 (>= 1.17), libstdc++6 (>= 13.1), zlib1g (>= 1:1.2.6), samtools, libdbi-perl, bsdextrautils, python3 Recommends: libspreadsheet-writeexcel-perl, littler Suggests: gdb Provides: stacks-web Section: science Priority: optional Homepage: https://creskolab.uoregon.edu/stacks/ Description: pipeline for building loci from short-read DNA sequences Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography. . Note that this package installs Stacks such that all commands must be run as: $ stacks Original-Maintainer: Debian Med Packaging Team drwxr-xr-x root/root 0 2024-04-01 08:04 ./ drwxr-xr-x root/root 0 2024-04-01 08:04 ./usr/ drwxr-xr-x root/root 0 2024-04-01 08:04 ./usr/bin/ -rwxr-xr-x root/root 775 2024-01-19 16:09 ./usr/bin/stacks drwxr-xr-x root/root 0 2024-04-01 08:04 ./usr/libexec/ drwxr-xr-x root/root 0 2024-04-01 08:04 ./usr/libexec/debian-med/ drwxr-xr-x root/root 0 2024-04-01 08:04 ./usr/libexec/debian-med/bin/ lrwxrwxrwx root/root 0 2024-04-01 08:04 ./usr/libexec/debian-med/bin/clone_filter -> ../../stacks/bin/clone_filter lrwxrwxrwx root/root 0 2024-04-01 08:04 ./usr/libexec/debian-med/bin/cstacks -> ../../stacks/bin/cstacks lrwxrwxrwx root/root 0 2024-04-01 08:04 ./usr/libexec/debian-med/bin/denovo_map -> ../../stacks/bin/denovo_map lrwxrwxrwx root/root 0 2024-04-01 08:04 ./usr/libexec/debian-med/bin/denovo_map.pl -> ../../stacks/bin/denovo_map.pl lrwxrwxrwx root/root 0 2024-04-01 08:04 ./usr/libexec/debian-med/bin/gstacks -> ../../stacks/bin/gstacks lrwxrwxrwx root/root 0 2024-04-01 08:04 ./usr/libexec/debian-med/bin/kmer_filter -> ../../stacks/bin/kmer_filter lrwxrwxrwx root/root 0 2024-04-01 08:04 ./usr/libexec/debian-med/bin/phasedstacks -> ../../stacks/bin/phasedstacks lrwxrwxrwx root/root 0 2024-04-01 08:04 ./usr/libexec/debian-med/bin/populations -> ../../stacks/bin/populations lrwxrwxrwx root/root 0 2024-04-01 08:04 ./usr/libexec/debian-med/bin/process_radtags -> ../../stacks/bin/process_radtags lrwxrwxrwx root/root 0 2024-04-01 08:04 ./usr/libexec/debian-med/bin/process_shortreads -> ../../stacks/bin/process_shortreads lrwxrwxrwx root/root 0 2024-04-01 08:04 ./usr/libexec/debian-med/bin/ref_map -> ../../stacks/bin/ref_map lrwxrwxrwx root/root 0 2024-04-01 08:04 ./usr/libexec/debian-med/bin/ref_map.pl -> ../../stacks/bin/ref_map.pl lrwxrwxrwx root/root 0 2024-04-01 08:04 ./usr/libexec/debian-med/bin/sstacks -> ../../stacks/bin/sstacks lrwxrwxrwx root/root 0 2024-04-01 08:04 ./usr/libexec/debian-med/bin/stacks-count-reads-per-sample-per-locus -> ../../stacks/bin/stacks-count-reads-per-sample-per-locus lrwxrwxrwx root/root 0 2024-04-01 08:04 ./usr/libexec/debian-med/bin/stacks-dist-extract -> ../../stacks/bin/stacks-dist-extract lrwxrwxrwx root/root 0 2024-04-01 08:04 ./usr/libexec/debian-med/bin/stacks-gdb -> ../../stacks/bin/stacks-gdb lrwxrwxrwx root/root 0 2024-04-01 08:04 ./usr/libexec/debian-med/bin/stacks-hist2d-loci-samples-coverage -> ../../stacks/bin/stacks-hist2d-loci-samples-coverage lrwxrwxrwx root/root 0 2024-04-01 08:04 ./usr/libexec/debian-med/bin/stacks-integrate-alignments -> ../../stacks/bin/stacks-integrate-alignments lrwxrwxrwx root/root 0 2024-04-01 08:04 ./usr/libexec/debian-med/bin/stacks-samtools-tview -> ../../stacks/bin/stacks-samtools-tview lrwxrwxrwx root/root 0 2024-04-01 08:04 ./usr/libexec/debian-med/bin/tsv2bam -> ../../stacks/bin/tsv2bam lrwxrwxrwx root/root 0 2024-04-01 08:04 ./usr/libexec/debian-med/bin/ustacks -> ../../stacks/bin/ustacks drwxr-xr-x root/root 0 2024-04-01 08:04 ./usr/libexec/stacks/ drwxr-xr-x root/root 0 2024-04-01 08:04 ./usr/libexec/stacks/bin/ -rwxr-xr-x root/root 299552 2024-04-01 08:04 ./usr/libexec/stacks/bin/clone_filter -rwxr-xr-x root/root 385200 2024-04-01 08:04 ./usr/libexec/stacks/bin/cstacks lrwxrwxrwx root/root 0 2024-04-01 08:04 ./usr/libexec/stacks/bin/denovo_map -> denovo_map.pl -rwxr-xr-x root/root 32838 2024-04-01 08:04 ./usr/libexec/stacks/bin/denovo_map.pl -rwxr-xr-x root/root 654872 2024-04-01 08:04 ./usr/libexec/stacks/bin/gstacks -rwxr-xr-x root/root 225736 2024-04-01 08:04 ./usr/libexec/stacks/bin/kmer_filter -rwxr-xr-x root/root 303312 2024-04-01 08:04 ./usr/libexec/stacks/bin/phasedstacks -rwxr-xr-x root/root 888080 2024-04-01 08:04 ./usr/libexec/stacks/bin/populations -rwxr-xr-x root/root 421096 2024-04-01 08:04 ./usr/libexec/stacks/bin/process_radtags -rwxr-xr-x root/root 300400 2024-04-01 08:04 ./usr/libexec/stacks/bin/process_shortreads lrwxrwxrwx root/root 0 2024-04-01 08:04 ./usr/libexec/stacks/bin/ref_map -> ref_map.pl -rwxr-xr-x root/root 15364 2024-04-01 08:04 ./usr/libexec/stacks/bin/ref_map.pl -rwxr-xr-x root/root 356328 2024-04-01 08:04 ./usr/libexec/stacks/bin/sstacks -rwxr-xr-x root/root 1040 2024-04-01 08:04 ./usr/libexec/stacks/bin/stacks-count-reads-per-sample-per-locus -rwxr-xr-x root/root 7316 2024-04-01 08:04 ./usr/libexec/stacks/bin/stacks-dist-extract -rwxr-xr-x root/root 1244 2024-04-01 08:04 ./usr/libexec/stacks/bin/stacks-gdb -rwxr-xr-x root/root 1773 2024-04-01 08:04 ./usr/libexec/stacks/bin/stacks-hist2d-loci-samples-coverage -rwxr-xr-x root/root 22320 2024-04-01 08:04 ./usr/libexec/stacks/bin/stacks-integrate-alignments -rwxr-xr-x root/root 3037 2024-04-01 08:04 ./usr/libexec/stacks/bin/stacks-samtools-tview -rwxr-xr-x root/root 376240 2024-04-01 08:04 ./usr/libexec/stacks/bin/tsv2bam -rwxr-xr-x root/root 398288 2024-04-01 08:04 ./usr/libexec/stacks/bin/ustacks drwxr-xr-x root/root 0 2024-04-01 08:04 ./usr/share/ drwxr-xr-x root/root 0 2024-04-01 08:04 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-04-01 08:04 ./usr/share/doc/stacks/ -rw-r--r-- root/root 1451 2024-01-19 16:09 ./usr/share/doc/stacks/README.Debian -rw-r--r-- root/root 1482 2024-04-01 08:04 ./usr/share/doc/stacks/changelog.Debian.gz -rw-r--r-- root/root 1730 2024-01-19 16:09 ./usr/share/doc/stacks/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: riscv64 Build Type: any Build-Space: 464120 Build-Time: 1872 Distribution: noble-proposed Host Architecture: riscv64 Install-Time: 132 Job: stacks_2.66+dfsg-1build2.dsc Machine Architecture: riscv64 Package: stacks Package-Time: 2038 Source-Version: 2.66+dfsg-1build2 Space: 464120 Status: successful Version: 2.66+dfsg-1build2 -------------------------------------------------------------------------------- Finished at 2024-04-02T13:06:04Z Build needed 00:33:58, 464120k disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=noble --arch=riscv64 PACKAGEBUILD-28012738 Scanning for processes to kill in build PACKAGEBUILD-28012738