sra-sdk 2.3.3-4~dfsg-1ubuntu1 source package in Ubuntu
Changelog
sra-sdk (2.3.3-4~dfsg-1ubuntu1) trusty; urgency=low
* Merge from Debian unstable. Remaining changes:
- debian/control: Limit to amd64 and i386 due to some assembly.
sra-sdk (2.3.3-4~dfsg-1) unstable; urgency=low
[ Andreas Tille ]
* New upstream version
* debian/upstream: Add citation information
* fix debian/watch
* debian/control:
- cme fix dpkg-control
- debhelper 9
- canonical Vcs fields
* debian/copyright: Exclude external libraries
* debian/rules:
- Add get-orig-source target to call enhances uscan
- remove override because upstream seems to do the correct thing now
- libsra-schema seems to be not built any more in this version so
drop the special handling of it
- Reactivate deletion of libs/krypto/*.pic.o.list files to get a
really clean source
* debian/doc: USAGE is not provided by upstream any more
* debian/patches/build-with-system-libbz2-libz.patch: Fix build problem
(thanks to Gert Wollny <email address hidden> for the patch)
* debian/sra-toolkit.install: There are neither mod?? nor wmod?? files
shipped in this version any more - so remove these from dh_install
* debian/patches/hardening.patch: Propagate Debian hardening options
into build system
* debian/patches/hardening-format-security.patch: Fix format strings in
snprintf() calls
* debian/watch: mangle version string
* debian/sra-toolkit-libs0.lintian-overrides: override
package-name-doesnt-match-sonames
[ Charles Plessy ]
32dd5cd Updated symbols file.
-- Logan Rosen <email address hidden> Tue, 10 Dec 2013 23:47:06 -0500
Upload details
- Uploaded by:
- Logan Rosen
- Uploaded to:
- Trusty
- Original maintainer:
- Ubuntu Developers
- Architectures:
- amd64 i386
- Section:
- science
- Urgency:
- Low Urgency
See full publishing history Publishing
| Series | Published | Component | Section |
|---|
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| sra-sdk_2.3.3-4~dfsg.orig.tar.gz | 3.3 MiB | 981bfddd0c832bca74dd2f4c314d284a0c0b166d7e94c0854529dbf8256f7250 |
| sra-sdk_2.3.3-4~dfsg-1ubuntu1.debian.tar.gz | 40.4 KiB | 4bbfc65afb6c32464f16b9178108e8577a1c7b4131cf7176a67b090bd5968117 |
| sra-sdk_2.3.3-4~dfsg-1ubuntu1.dsc | 1.9 KiB | ccd098488c2c52ef76b0283adec640124add6a111da4daf517ab9889de45a944 |
Available diffs
Binary packages built by this source
- sra-toolkit: utilities for the NCBI Sequence Read Archive
Tools for reading the SRA archive, generally by converting individual runs
into some commonly used format such as fastq.
.
The textual dumpers "sra-dump" and "vdb-dump" are provided in this
release as an aid in visual inspection. It is likely that their
actual output formatting will be changed in the near future to a
stricter, more formalized representation[s]. PLEASE DO NOT RELY UPON
THE OUTPUT FORMAT SEEN IN THIS RELEASE.
.
The "help" information will be improved in near future releases, and
the tool options will become standardized across the set. More documentation
will also be provided documentation on the NCBI web site.
.
Tool options may change in the next release. Version 1 tool options
will remain supported wherever possible in order to preserve
operation of any existing scripts.
- sra-toolkit-libs-dev: No summary available for sra-toolkit-libs-dev in ubuntu utopic.
No description available for sra-toolkit-
libs-dev in ubuntu utopic.
- sra-toolkit-libs0: Libraries for the SRA Toolkit
This package provides all libraries and modules for executing the
NCBI SRA toolkit's programs. This currently includes:
.
libkdb # physical layer reading library
libkfg # configuration library
libkfs # file system library
libklib # support library
libkproc # process synchronization library
libkq # cross-thread queue library
libksproc # single-threaded emulation library
libksrch # search algorithm library
libkxfs # XML to filesystem library
libkxml # XML container support library
libload # loader tool utility library
libsra-schema # weak-linked sra schema
libsradb # API for accessing sra
libsrapath # weak-link stubs for srapath
libsrareader # reader library
libvdb # virtual layer reading library
libwkdb # physical layer update library
libwsradb # update API for SRA
libwvdb # virtual layer update library
