sra-sdk 2.11.3+dfsg-1 source package in Ubuntu

Changelog

sra-sdk (2.11.3+dfsg-1) unstable; urgency=medium

  [ Andreas Tille ]
  * Fix watchfile to detect new versions on github
  * New upstream version 2.11.2.
  * Standards-Version: 4.6.0 (routine-update)
  * Bump versioned Build-Depends: libngs-sdk-dev (>= 2.11.2)
  * Skip test that test needs a *lot* of memory
  * Link against libzstd.  (Closes: #997280.)

  [ Aaron M. Ucko ]
  * d/p/fix_libngs_linkage.patch (new): Substitute ngs-c++ library for
    absent ngs library.
  * debian/rules: Stop renaming kget (to avoid a file conflict, #851219)
    now that it's retired altogether.
  * d/p/allow_multi_help.patch (new): Tolerate redundant --help
    declarations within tools/driver-tool.
  * d/p/run_unversioned_tools.patch (new): Look for tools by their
    unversioned names, per Debian's simplified installation arrangement.
  * debian/tests: Switch to modern encryption/decryption setup.
    - run-unit-test: Replace protected repository configuration (no longer
      supported as of ncbi-vdb 2.11.0) by --ngc [...].ngc.
    - test-data.tar.gz: Replace dbGaP-0.enc_key by a copy of upstream's
      test/prefetch/data/prj_phs710EA_test.ngc.
  * debian/watch: Look for tags rather than releases, as GitHub currently
    lists none(!) of the latter.
  * New upstream version 2.11.3.

 -- Aaron M. Ucko <email address hidden>  Mon, 25 Oct 2021 18:29:10 -0400

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
amd64
Section:
science
Urgency:
Medium Urgency

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Builds

Jammy: [FULLYBUILT] amd64

Downloads

File Size SHA-256 Checksum
sra-sdk_2.11.3+dfsg-1.dsc 2.2 KiB b212a12ebdfe609d8315e94f80cb39a73b929704f4334dd997934ae130e40cd2
sra-sdk_2.11.3+dfsg.orig.tar.xz 5.6 MiB f6a26bfbfda2f41a9be9b61963a20e5607127a9260d3984af1a747f8d5dbee76
sra-sdk_2.11.3+dfsg-1.debian.tar.xz 3.6 MiB 186ea0722bf5a78132a4525bb91022e4f6381f6e9ffa062e1f3a317fd1ac4174

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Binary packages built by this source

sra-toolkit: utilities for the NCBI Sequence Read Archive

 Tools for reading the SRA archive, generally by converting individual runs
 into some commonly used format such as fastq.
 .
 The textual dumpers "sra-dump" and "vdb-dump" are provided in this
 release as an aid in visual inspection. It is likely that their
 actual output formatting will be changed in the near future to a
 stricter, more formalized representation[s]. PLEASE DO NOT RELY UPON
 THE OUTPUT FORMAT SEEN IN THIS RELEASE.
 .
 Other tools distributed in this package are:
  abi-dump, abi-load
  align-info
  bam-load
  cache-mgr
  cg-load
  copycat
  fasterq-dump
  fastq-dump, fastq-load
  helicos-load
  illumina-dump, illumina-load
  kar
  kdbmeta
  latf-load
  pacbio-load
  prefetch
  rcexplain
  remote-fuser
  sff-dump, sff-load
  sra-pileup, sra-sort, sra-stat, srapath
  srf-load
  test-sra
  vdb-config, vdb-copy, vdb-decrypt, vdb-encrypt, vdb-get, vdb-lock,
  vdb-passwd, vdb-unlock, vdb-validate
 .
 The "help" information will be improved in near future releases, and
 the tool options will become standardized across the set. More documentation
 will also be provided documentation on the NCBI web site.
 .
 Tool options may change in the next release. Version 1 tool options
 will remain supported wherever possible in order to preserve
 operation of any existing scripts.

sra-toolkit-dbgsym: debug symbols for sra-toolkit