sra-sdk 2.10.9+dfsg-2 source package in Ubuntu

Changelog

sra-sdk (2.10.9+dfsg-2) unstable; urgency=medium

  * run-unit-test: Give up for now on {abi,fastq,illumina,sff}-load.
    All four rely deeply on retired VDB functionality that would be
    too awkward to reintroduce.
  * skip_broken_loaders.patch (new): Likewise stop building or trying to
    install anything from tools/sra-load, to avoid leading users on.

 -- Aaron M. Ucko <email address hidden>  Thu, 04 Feb 2021 20:38:51 -0500

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
amd64
Section:
science
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Impish release universe science
Hirsute release universe science

Builds

Hirsute: [FULLYBUILT] amd64

Downloads

File Size SHA-256 Checksum
sra-sdk_2.10.9+dfsg-2.dsc 2.2 KiB 2e7e99ceff6959608ed126018ccb8556f793e345546601f2a7384f572d626188
sra-sdk_2.10.9+dfsg.orig.tar.xz 5.5 MiB ed9e44bc4e662ac4996bdb9e34c3bc629f90e80d514067c813fbf6ec02a29d56
sra-sdk_2.10.9+dfsg-2.debian.tar.xz 3.7 MiB 27349102775d42dc0b6cc19885a6ac1aacfedfbe27955872a037ff10f0fa06de

No changes file available.

Binary packages built by this source

sra-toolkit: utilities for the NCBI Sequence Read Archive

 Tools for reading the SRA archive, generally by converting individual runs
 into some commonly used format such as fastq.
 .
 The textual dumpers "sra-dump" and "vdb-dump" are provided in this
 release as an aid in visual inspection. It is likely that their
 actual output formatting will be changed in the near future to a
 stricter, more formalized representation[s]. PLEASE DO NOT RELY UPON
 THE OUTPUT FORMAT SEEN IN THIS RELEASE.
 .
 Other tools distributed in this package are:
  abi-dump, abi-load
  align-info
  bam-load
  cache-mgr
  cg-load
  copycat
  fasterq-dump
  fastq-dump, fastq-load
  helicos-load
  illumina-dump, illumina-load
  kar
  kdbmeta
  latf-load
  pacbio-load
  prefetch
  rcexplain
  remote-fuser
  sff-dump, sff-load
  sra-pileup, sra-sort, sra-stat, srapath
  srf-load
  test-sra
  vdb-config, vdb-copy, vdb-decrypt, vdb-encrypt, vdb-get, vdb-lock,
  vdb-passwd, vdb-unlock, vdb-validate
 .
 The "help" information will be improved in near future releases, and
 the tool options will become standardized across the set. More documentation
 will also be provided documentation on the NCBI web site.
 .
 Tool options may change in the next release. Version 1 tool options
 will remain supported wherever possible in order to preserve
 operation of any existing scripts.

sra-toolkit-dbgsym: debug symbols for sra-toolkit