spades 3.15.5+dfsg-1 source package in Ubuntu
Changelog
spades (3.15.5+dfsg-1) unstable; urgency=medium
* New upstream version 3.15.5+dfsg
* d/patches/:
+ fix-privacy-breaches.patch: update badges list.
+ python3.patch: refresh.
+ 0003_accept-system-bwa.patch: unfuzz.
+ yaml_load.patch: unfuzz.
* d/m/coronaspades.1.adoc: add manual page for coronaspades.
* d/links: create a link for coronaspades.py manual.
* d/t/run-upstreams-tests: add self tests for plasmidspades and coronaspades.
Also, the truspades command is deprecated, so don't make it's self-test
failure critical.
* d/salsa-ci.yml: disable run for i386 architecture.
* d/NEWS: forward deprecation of truspades with notice it may not work well.
-- Étienne Mollier <email address hidden> Mon, 01 Aug 2022 21:11:59 +0200
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section |
|---|
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| spades_3.15.5+dfsg-1.dsc | 2.4 KiB | 3fdac677ad7688b5814caa62edacaa1e54d63d26de6788af5ed4839f1132317a |
| spades_3.15.5+dfsg.orig.tar.xz | 9.4 MiB | 45c205c1b2f2b868246e69526f7a84e3fe7fd5ebe3c846501e9a6c14c12fa975 |
| spades_3.15.5+dfsg-1.debian.tar.xz | 29.3 KiB | b29a692e8b293d0a6faa221e978df6f7f9eccb60a9a9458ad7317f10add46cbc |
Available diffs
- diff from 3.15.4+dfsg-3 to 3.15.5+dfsg-1 (41.2 KiB)
No changes file available.
Binary packages built by this source
- spades: genome assembler for single-cell and isolates data sets
The SPAdes – St. Petersburg genome assembler is intended for both
standard isolates and single-cell MDA bacteria assemblies. It works
with Illumina or IonTorrent reads and is capable of providing hybrid
assemblies using PacBio and Sanger reads. You can also provide
additional contigs that will be used as long reads.
.
This package provides the following additional pipelines:
* metaSPAdes – a pipeline for metagenomic data sets
* plasmidSPAdes – a pipeline for extracting and assembling plasmids
from WGS data sets
* metaplasmidSPAdes – a pipeline for extracting and assembling
plasmids from metagenomic data sets
* rnaSPAdes – a de novo transcriptome assembler from RNA-Seq data
* truSPAdes – a module for TruSeq barcode assembly
* biosyntheticSPAdes – a module for biosynthetic gene cluster
assembly with paired-end reads
.
SPAdes provides several stand-alone binaries with relatively simple
command-line interface: k-mer counting (spades-kmercounter) , assembly
graph construction (spades-gbuilder) and long read to graph aligner
(spades-gmapper).
- spades-dbgsym: debug symbols for spades
