soapaligner 2.20-3 source package in Ubuntu
Changelog
soapaligner (2.20-3) unstable; urgency=medium
* Team upload.
* Architecture: any-amd64 x32
Closes: #903003
* More sensible date for reproducible builds (SOURCE_DATE_EPOCH)
* Force propagation of hardening options
* Fix spelling
-- Andreas Tille <email address hidden> Thu, 05 Jul 2018 13:51:03 +0200
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any-amd64
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section | |
|---|---|---|---|---|
| Focal | release | universe | misc |
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| soapaligner_2.20-3.dsc | 1.9 KiB | bc99085560a03b9a3bb3285d9a2072551a4b7be377b61962c5989d4400545913 |
| soapaligner_2.20.orig.tar.gz | 108.3 KiB | c5253dddc35e289723f3daada4a3a083111ff6fb9898bc8241dab6f6f972d456 |
| soapaligner_2.20-3.debian.tar.xz | 5.3 KiB | 4f85646a1306d36d4e98cdc6f744afea52964ef895d40ada11de047755648c95 |
Available diffs
- diff from 2.20-1 to 2.20-3 (2.3 KiB)
- diff from 2.20-2 to 2.20-3 (1.8 KiB)
No changes file available.
Binary packages built by this source
- soapaligner: aligner of short reads of next generation sequencers
This package addresses a common problem in bioinformatics that has
become routine now also in clinical research: the assembly and
comparison of the very long genomic DNA sequences from many
short reads that the machines provide.
.
SOAPaligner/soap2 is a member of the Short Oligonucleotide Analysis
Package (SOAP) and an updated version of SOAP software for short
oligonucleotide alignment (soap v1). The new program features in super
fast and accurate alignment for huge amounts of short reads generated by
Illumina/Solexa Genome Analyzer. Compared to soap v1, it is one order
of magnitude faster. It require only 2 minutes aligning one million
single-end reads onto the human reference genome. Another remarkable
improvement of SOAPaligner is that it now supports a wide range of the
read length.
.
SOAPaligner/soap2 benefitted in time and space efficiency by a revolution
in the basic data structures and algorithms used. The core algorithms and
the indexing data structures (2way-BWT) are developed by the algorithms
research group of the Department of Computer Science, the University
of Hong Kong (T.W. Lam, Alan Tam, Simon Wong, Edward Wu and S.M. Yiu).
- soapaligner-dbgsym: No summary available for soapaligner-dbgsym in ubuntu cosmic.
No description available for soapaligner-dbgsym in ubuntu cosmic.
