https://launchpad.net/ubuntu/+source/snp-sites/2.4.1-1/+build/15636729 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux lcy01-amd64-023 4.4.0-138-generic #164-Ubuntu SMP Tue Oct 2 17:16:02 UTC 2018 x86_64 Buildd toolchain package versions: launchpad-buildd_165 python-lpbuildd_165 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.5 dpkg-dev_1.18.4ubuntu1.5 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 9 Nov 14:50:17 ntpdate[1806]: adjust time server 10.211.37.1 offset 0.061845 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=disco --arch=i386 PACKAGEBUILD-15636729 /home/buildd/filecache-default/727e394105280e93a16c79dcca0079cc298d61c4 Creating target for build PACKAGEBUILD-15636729 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=disco --arch=i386 PACKAGEBUILD-15636729 Starting target for build PACKAGEBUILD-15636729 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=disco --arch=i386 PACKAGEBUILD-15636729 'deb http://ftpmaster.internal/ubuntu disco main universe' 'deb http://ftpmaster.internal/ubuntu disco-security main universe' 'deb http://ftpmaster.internal/ubuntu disco-updates main universe' 'deb http://ftpmaster.internal/ubuntu disco-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-15636729 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=disco --arch=i386 PACKAGEBUILD-15636729 Updating target for build PACKAGEBUILD-15636729 Get:1 http://ftpmaster.internal/ubuntu disco InRelease [243 kB] Get:2 http://ftpmaster.internal/ubuntu disco-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu disco-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu disco-proposed InRelease [93.2 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main i386 Packages [1005 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main Translation-en [513 kB] Get:7 http://ftpmaster.internal/ubuntu disco/universe i386 Packages [8705 kB] Get:8 http://ftpmaster.internal/ubuntu disco/universe Translation-en [5039 kB] Get:9 http://ftpmaster.internal/ubuntu disco-proposed/main i386 Packages [124 kB] Get:10 http://ftpmaster.internal/ubuntu disco-proposed/main Translation-en [71.4 kB] Get:11 http://ftpmaster.internal/ubuntu disco-proposed/universe i386 Packages [579 kB] Get:12 http://ftpmaster.internal/ubuntu disco-proposed/universe Translation-en [391 kB] Fetched 16.9 MB in 5s (3571 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libgdbm5 libperl5.26 perl-modules-5.26 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libgdbm6 libperl5.28 perl-modules-5.28 The following packages will be upgraded: base-files binutils binutils-common binutils-i686-linux-gnu cpp cpp-8 dash dmsetup findutils g++ g++-8 gcc gcc-8 gcc-8-base hostname init init-system-helpers libapparmor1 libasan5 libatomic1 libaudit-common libaudit1 libbinutils libcap-ng0 libcc1-0 libdb5.3 libdevmapper1.02.1 libgcc-8-dev libgcc1 libgdbm-compat4 libgomp1 libgpg-error0 libitm1 libkmod2 libmpx2 libquadmath0 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsqlite3-0 libstdc++-8-dev libstdc++6 libsystemd0 libubsan1 libudev1 linux-libc-dev lockfile-progs perl perl-base sed systemd systemd-sysv tzdata 54 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 47.6 MB of archives. After this operation, 42.9 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu disco/main i386 base-files i386 10.1ubuntu8 [60.2 kB] Get:2 http://ftpmaster.internal/ubuntu disco/main i386 dash i386 0.5.10.2-1 [94.4 kB] Get:3 http://ftpmaster.internal/ubuntu disco-proposed/main i386 findutils i386 4.6.0+git+20181018-1 [307 kB] Get:4 http://ftpmaster.internal/ubuntu disco/main i386 hostname i386 3.21 [11.6 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main i386 perl-modules-5.28 all 5.28.0-3 [2818 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main i386 libgdbm6 i386 1.18.1-1 [32.1 kB] Get:7 http://ftpmaster.internal/ubuntu disco/main i386 libgdbm-compat4 i386 1.18.1-1 [6704 B] Get:8 http://ftpmaster.internal/ubuntu disco/main i386 libperl5.28 i386 5.28.0-3 [3436 kB] Get:9 http://ftpmaster.internal/ubuntu disco/main i386 perl i386 5.28.0-3 [204 kB] Get:10 http://ftpmaster.internal/ubuntu disco/main i386 perl-base i386 5.28.0-3 [1600 kB] Get:11 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libdb5.3 i386 5.3.28+dfsg1-0.2 [737 kB] Get:12 http://ftpmaster.internal/ubuntu disco-proposed/main i386 sed i386 4.5-2 [189 kB] Get:13 http://ftpmaster.internal/ubuntu disco-proposed/main i386 init-system-helpers all 1.55 [38.5 kB] Get:14 http://ftpmaster.internal/ubuntu disco-proposed/main i386 systemd-sysv i386 239-7ubuntu10.1 [9400 B] Get:15 http://ftpmaster.internal/ubuntu disco/main i386 libapparmor1 i386 2.12-4ubuntu10 [31.3 kB] Get:16 http://ftpmaster.internal/ubuntu disco/main i386 libaudit-common all 1:2.8.3-1ubuntu3 [4068 B] Get:17 http://ftpmaster.internal/ubuntu disco/main i386 libcap-ng0 i386 0.7.9-1build1 [11.1 kB] Get:18 http://ftpmaster.internal/ubuntu disco/main i386 libaudit1 i386 1:2.8.3-1ubuntu3 [40.0 kB] Get:19 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libgpg-error0 i386 1.32-3 [60.5 kB] Get:20 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libkmod2 i386 25-1ubuntu1.1 [47.7 kB] Get:21 http://ftpmaster.internal/ubuntu disco-proposed/main i386 systemd i386 239-7ubuntu10.1 [3067 kB] Get:22 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libsystemd0 i386 239-7ubuntu10.1 [228 kB] Get:23 http://ftpmaster.internal/ubuntu disco-proposed/main i386 init i386 1.55 [6476 B] Get:24 http://ftpmaster.internal/ubuntu disco/main i386 libquadmath0 i386 8.2.0-9ubuntu1 [208 kB] Get:25 http://ftpmaster.internal/ubuntu disco/main i386 libubsan1 i386 8.2.0-9ubuntu1 [138 kB] Get:26 http://ftpmaster.internal/ubuntu disco/main i386 libitm1 i386 8.2.0-9ubuntu1 [30.8 kB] Get:27 http://ftpmaster.internal/ubuntu disco/main i386 libasan5 i386 8.2.0-9ubuntu1 [375 kB] Get:28 http://ftpmaster.internal/ubuntu disco/main i386 gcc-8-base i386 8.2.0-9ubuntu1 [18.6 kB] Get:29 http://ftpmaster.internal/ubuntu disco/main i386 libstdc++6 i386 8.2.0-9ubuntu1 [430 kB] Get:30 http://ftpmaster.internal/ubuntu disco/main i386 libgomp1 i386 8.2.0-9ubuntu1 [80.7 kB] Get:31 http://ftpmaster.internal/ubuntu disco/main i386 libatomic1 i386 8.2.0-9ubuntu1 [9604 B] Get:32 http://ftpmaster.internal/ubuntu disco/main i386 libmpx2 i386 8.2.0-9ubuntu1 [13.0 kB] Get:33 http://ftpmaster.internal/ubuntu disco/main i386 cpp-8 i386 8.2.0-9ubuntu1 [7537 kB] Get:34 http://ftpmaster.internal/ubuntu disco/main i386 libcc1-0 i386 8.2.0-9ubuntu1 [41.9 kB] Get:35 http://ftpmaster.internal/ubuntu disco/main i386 gcc-8 i386 8.2.0-9ubuntu1 [8330 kB] Get:36 http://ftpmaster.internal/ubuntu disco/main i386 g++-8 i386 8.2.0-9ubuntu1 [8444 kB] Get:37 http://ftpmaster.internal/ubuntu disco/main i386 libstdc++-8-dev i386 8.2.0-9ubuntu1 [1586 kB] Get:38 http://ftpmaster.internal/ubuntu disco/main i386 libgcc-8-dev i386 8.2.0-9ubuntu1 [2299 kB] Get:39 http://ftpmaster.internal/ubuntu disco/main i386 libgcc1 i386 1:8.2.0-9ubuntu1 [48.1 kB] Get:40 http://ftpmaster.internal/ubuntu disco/main i386 libbinutils i386 2.31.1-7ubuntu1 [518 kB] Get:41 http://ftpmaster.internal/ubuntu disco/main i386 binutils-common i386 2.31.1-7ubuntu1 [194 kB] Get:42 http://ftpmaster.internal/ubuntu disco/main i386 binutils i386 2.31.1-7ubuntu1 [3392 B] Get:43 http://ftpmaster.internal/ubuntu disco/main i386 binutils-i686-linux-gnu i386 2.31.1-7ubuntu1 [1985 kB] Get:44 http://ftpmaster.internal/ubuntu disco/main i386 libselinux1 i386 2.8-1build2 [73.5 kB] Get:45 http://ftpmaster.internal/ubuntu disco/main i386 libsemanage-common all 2.8-1build2 [6892 B] Get:46 http://ftpmaster.internal/ubuntu disco/main i386 libsemanage1 i386 2.8-1build2 [93.8 kB] Get:47 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libudev1 i386 239-7ubuntu10.1 [57.6 kB] Get:48 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libseccomp2 i386 2.3.3-3ubuntu2 [35.6 kB] Get:49 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libdevmapper1.02.1 i386 2:1.02.145-4.1ubuntu4 [125 kB] Get:50 http://ftpmaster.internal/ubuntu disco-proposed/main i386 dmsetup i386 2:1.02.145-4.1ubuntu4 [70.4 kB] Get:51 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libsqlite3-0 i386 3.25.3-1 [564 kB] Get:52 http://ftpmaster.internal/ubuntu disco/main i386 tzdata all 2018g-1 [188 kB] Get:53 http://ftpmaster.internal/ubuntu disco/main i386 g++ i386 4:8.2.0-2ubuntu2 [1616 B] Get:54 http://ftpmaster.internal/ubuntu disco/main i386 gcc i386 4:8.2.0-2ubuntu2 [5272 B] Get:55 http://ftpmaster.internal/ubuntu disco/main i386 cpp i386 4:8.2.0-2ubuntu2 [27.6 kB] Get:56 http://ftpmaster.internal/ubuntu disco-proposed/main i386 linux-libc-dev i386 4.18.0-11.12 [1040 kB] Get:57 http://ftpmaster.internal/ubuntu disco/main i386 lockfile-progs i386 0.1.18 [9856 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 47.6 MB in 2s (30.3 MB/s) (Reading database ... 12644 files and directories currently installed.) Preparing to unpack .../base-files_10.1ubuntu8_i386.deb ... Unpacking base-files (10.1ubuntu8) over (10.1ubuntu7) ... Setting up base-files (10.1ubuntu8) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... 12644 files and directories currently installed.) Preparing to unpack .../dash_0.5.10.2-1_i386.deb ... Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' Unpacking dash (0.5.10.2-1) over (0.5.8-2.10) ... Setting up dash (0.5.10.2-1) ... Removing 'diversion of /bin/sh to /bin/sh.distrib by bash' Adding 'diversion of /bin/sh to /bin/sh.distrib by dash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' (Reading database ... 12644 files and directories currently installed.) Preparing to unpack .../findutils_4.6.0+git+20181018-1_i386.deb ... Unpacking findutils (4.6.0+git+20181018-1) over (4.6.0+git+20180808-2) ... Setting up findutils (4.6.0+git+20181018-1) ... (Reading database ... 12644 files and directories currently installed.) Preparing to unpack .../hostname_3.21_i386.deb ... Unpacking hostname (3.21) over (3.20) ... Setting up hostname (3.21) ... (Reading database ... 12644 files and directories currently installed.) Preparing to unpack .../0-perl_5.28.0-3_i386.deb ... Unpacking perl (5.28.0-3) over (5.26.2-7) ... 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RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-15636729 i386 disco-proposed -c chroot:build-PACKAGEBUILD-15636729 --arch=i386 --dist=disco-proposed --nolog snp-sites_2.4.1-1.dsc Initiating build PACKAGEBUILD-15636729 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-138-generic #164-Ubuntu SMP Tue Oct 2 17:16:02 UTC 2018 i686 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lcy01-amd64-023.buildd +==============================================================================+ | snp-sites 2.4.1-1 (i386) 09 Nov 2018 14:50 | +==============================================================================+ Package: snp-sites Version: 2.4.1-1 Source Version: 2.4.1-1 Distribution: disco-proposed Machine Architecture: amd64 Host Architecture: i386 Build Architecture: i386 I: NOTICE: Log filtering will replace 'build/snp-sites-nI3oKt/snp-sites-2.4.1' with '<>' I: NOTICE: Log filtering will replace 'build/snp-sites-nI3oKt' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-15636729/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- snp-sites_2.4.1-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-ZoRwzP/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-ZoRwzP/apt_archive ./ InRelease Get:2 copy:/<>/resolver-ZoRwzP/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-ZoRwzP/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-ZoRwzP/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-ZoRwzP/apt_archive ./ Packages [526 B] Fetched 2859 B in 0s (207 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libgdbm5 libperl5.26 perl-modules-5.26 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 848 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-ZoRwzP/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 848 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14533 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_i386.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11), zlib1g-dev, check, pkg-config, d-shlibs, asciidoctor Filtered Build-Depends: debhelper (>= 11), zlib1g-dev, check, pkg-config, d-shlibs, asciidoctor dpkg-deb: building package 'sbuild-build-depends-snp-sites-dummy' in '/<>/resolver-Lav0dn/apt_archive/sbuild-build-depends-snp-sites-dummy.deb'. Ign:1 copy:/<>/resolver-Lav0dn/apt_archive ./ InRelease Get:2 copy:/<>/resolver-Lav0dn/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-Lav0dn/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-Lav0dn/apt_archive ./ Sources [246 B] Get:5 copy:/<>/resolver-Lav0dn/apt_archive ./ Packages [566 B] Fetched 2931 B in 0s (201 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install snp-sites build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libgdbm5 libperl5.26 perl-modules-5.26 Use 'apt autoremove' to remove them. The following additional packages will be installed: asciidoctor autoconf automake autopoint autotools-dev bsdmainutils check d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libicu60 libmagic-mgc libmagic1 libpipeline1 libruby2.5 libsigsegv2 libsubunit-dev libsubunit0 libtool libxml2 libyaml-0-2 m4 man-db pkg-config po-debconf rake ruby ruby-asciidoctor ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert ruby-test-unit ruby-xmlrpc ruby2.5 rubygems-integration zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl ri ruby-dev bundler Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl zip fonts-lato libjs-jquery The following NEW packages will be installed: asciidoctor autoconf automake autopoint autotools-dev bsdmainutils check d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libicu60 libmagic-mgc libmagic1 libpipeline1 libruby2.5 libsigsegv2 libsubunit-dev libsubunit0 libtool libxml2 libyaml-0-2 m4 man-db pkg-config po-debconf rake ruby ruby-asciidoctor ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert ruby-test-unit ruby-xmlrpc ruby2.5 rubygems-integration sbuild-build-depends-snp-sites-dummy zlib1g-dev 0 upgraded, 51 newly installed, 0 to remove and 0 not upgraded. Need to get 21.1 MB of archives. After this operation, 82.3 MB of additional disk space will be used. Get:1 copy:/<>/resolver-Lav0dn/apt_archive ./ sbuild-build-depends-snp-sites-dummy 0.invalid.0 [896 B] Get:2 http://ftpmaster.internal/ubuntu disco/main i386 libbsd0 i386 0.9.1-1 [48.8 kB] Get:3 http://ftpmaster.internal/ubuntu disco/main i386 bsdmainutils i386 11.1.2ubuntu2 [183 kB] Get:4 http://ftpmaster.internal/ubuntu disco/main i386 groff-base i386 1.22.3-10 [1169 kB] Get:5 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libpipeline1 i386 1.5.0-2 [27.6 kB] Get:6 http://ftpmaster.internal/ubuntu disco-proposed/main i386 man-db i386 2.8.4-3 [1038 kB] Get:7 http://ftpmaster.internal/ubuntu disco/main i386 libmagic-mgc i386 1:5.34-2 [197 kB] Get:8 http://ftpmaster.internal/ubuntu disco/main i386 libmagic1 i386 1:5.34-2 [78.8 kB] Get:9 http://ftpmaster.internal/ubuntu disco/main i386 file i386 1:5.34-2 [22.8 kB] Get:10 http://ftpmaster.internal/ubuntu disco/main i386 libelf1 i386 0.170-0.5.0ubuntu1 [49.5 kB] Get:11 http://ftpmaster.internal/ubuntu disco/main i386 libglib2.0-0 i386 2.58.1-2 [1246 kB] Get:12 http://ftpmaster.internal/ubuntu disco/main i386 libicu60 i386 60.2-6ubuntu1 [8192 kB] Get:13 http://ftpmaster.internal/ubuntu disco/main i386 libxml2 i386 2.9.4+dfsg1-7ubuntu2 [658 kB] Get:14 http://ftpmaster.internal/ubuntu disco/main i386 libyaml-0-2 i386 0.2.1-1 [49.1 kB] Get:15 http://ftpmaster.internal/ubuntu disco/main i386 gettext-base i386 0.19.8.1-8 [51.1 kB] Get:16 http://ftpmaster.internal/ubuntu disco/main i386 rubygems-integration all 1.11 [4994 B] Get:17 http://ftpmaster.internal/ubuntu disco/main i386 rake all 12.3.1-3 [44.9 kB] Get:18 http://ftpmaster.internal/ubuntu disco/main i386 ruby-did-you-mean all 1.2.1-1 [9828 B] Get:19 http://ftpmaster.internal/ubuntu disco/main i386 ruby-minitest all 5.11.3-1 [39.4 kB] Get:20 http://ftpmaster.internal/ubuntu disco/main i386 ruby-net-telnet all 0.1.1-2 [12.6 kB] Get:21 http://ftpmaster.internal/ubuntu disco/main i386 ruby-power-assert all 1.1.1-1 [11.0 kB] Get:22 http://ftpmaster.internal/ubuntu disco/main i386 ruby-test-unit all 3.2.8-1 [61.4 kB] Get:23 http://ftpmaster.internal/ubuntu disco/main i386 ruby-xmlrpc all 0.3.0-2 [23.8 kB] Get:24 http://ftpmaster.internal/ubuntu disco/main i386 libruby2.5 i386 2.5.1-6ubuntu2 [3188 kB] Get:25 http://ftpmaster.internal/ubuntu disco/main i386 ruby2.5 i386 2.5.1-6ubuntu2 [48.7 kB] Get:26 http://ftpmaster.internal/ubuntu disco/main i386 ruby i386 1:2.5.1 [5708 B] Get:27 http://ftpmaster.internal/ubuntu disco/universe i386 ruby-asciidoctor all 1.5.7.1-1 [157 kB] Get:28 http://ftpmaster.internal/ubuntu disco/universe i386 asciidoctor i386 1.5.7.1-1 [37.4 kB] Get:29 http://ftpmaster.internal/ubuntu disco/main i386 libsigsegv2 i386 2.12-2 [14.2 kB] Get:30 http://ftpmaster.internal/ubuntu disco/main i386 m4 i386 1.4.18-1ubuntu1 [202 kB] Get:31 http://ftpmaster.internal/ubuntu disco/main i386 autoconf all 2.69-11 [322 kB] Get:32 http://ftpmaster.internal/ubuntu disco/main i386 autotools-dev all 20180224.1 [39.6 kB] Get:33 http://ftpmaster.internal/ubuntu disco-proposed/main i386 automake all 1:1.16.1-4 [522 kB] Get:34 http://ftpmaster.internal/ubuntu disco/main i386 autopoint all 0.19.8.1-8 [412 kB] Get:35 http://ftpmaster.internal/ubuntu disco/main i386 libsubunit0 i386 1.3.0-1 [7216 B] Get:36 http://ftpmaster.internal/ubuntu disco/main i386 libsubunit-dev i386 1.3.0-1 [6252 B] Get:37 http://ftpmaster.internal/ubuntu disco/universe i386 check i386 0.10.0-3build2 [169 kB] Get:38 http://ftpmaster.internal/ubuntu disco/universe i386 d-shlibs all 0.82+nmu1 [10.2 kB] Get:39 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libtool all 2.4.6-6 [195 kB] Get:40 http://ftpmaster.internal/ubuntu disco/main i386 dh-autoreconf all 19 [16.1 kB] Get:41 http://ftpmaster.internal/ubuntu disco/main i386 libarchive-zip-perl all 1.64-1 [84.9 kB] Get:42 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libfile-stripnondeterminism-perl all 0.044-1 [15.0 kB] Get:43 http://ftpmaster.internal/ubuntu disco-proposed/main i386 dh-strip-nondeterminism all 0.044-1 [5124 B] Get:44 http://ftpmaster.internal/ubuntu disco/main i386 dwz i386 0.12-2 [80.4 kB] Get:45 http://ftpmaster.internal/ubuntu disco/main i386 libcroco3 i386 0.6.12-2 [87.7 kB] Get:46 http://ftpmaster.internal/ubuntu disco/main i386 gettext i386 0.19.8.1-8 [904 kB] Get:47 http://ftpmaster.internal/ubuntu disco/main i386 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:48 http://ftpmaster.internal/ubuntu disco/main i386 po-debconf all 1.0.20 [232 kB] Get:49 http://ftpmaster.internal/ubuntu disco/main i386 debhelper all 11.3.2ubuntu1 [883 kB] Get:50 http://ftpmaster.internal/ubuntu disco/main i386 pkg-config i386 0.29.1-0ubuntu2 [45.8 kB] Get:51 http://ftpmaster.internal/ubuntu disco/main i386 zlib1g-dev i386 1:1.2.11.dfsg-0ubuntu2 [178 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 21.1 MB in 1s (31.3 MB/s) Selecting previously unselected package libbsd0:i386. (Reading database ... 14533 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-1_i386.deb ... Unpacking libbsd0:i386 (0.9.1-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2ubuntu2_i386.deb ... Unpacking bsdmainutils (11.1.2ubuntu2) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.3-10_i386.deb ... Unpacking groff-base (1.22.3-10) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../03-libpipeline1_1.5.0-2_i386.deb ... Unpacking libpipeline1:i386 (1.5.0-2) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.8.4-3_i386.deb ... Unpacking man-db (2.8.4-3) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../05-libmagic-mgc_1%3a5.34-2_i386.deb ... Unpacking libmagic-mgc (1:5.34-2) ... Selecting previously unselected package libmagic1:i386. 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Unpacking zlib1g-dev:i386 (1:1.2.11.dfsg-0ubuntu2) ... Selecting previously unselected package sbuild-build-depends-snp-sites-dummy. Preparing to unpack .../50-sbuild-build-depends-snp-sites-dummy_0.invalid.0_i386.deb ... Unpacking sbuild-build-depends-snp-sites-dummy (0.invalid.0) ... Setting up libicu60:i386 (60.2-6ubuntu1) ... Setting up ruby-xmlrpc (0.3.0-2) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libsigsegv2:i386 (2.12-2) ... Setting up libelf1:i386 (0.170-0.5.0ubuntu1) ... Setting up groff-base (1.22.3-10) ... Setting up libglib2.0-0:i386 (2.58.1-2) ... No schema files found: doing nothing. Setting up libsubunit0:i386 (1.3.0-1) ... Setting up d-shlibs (0.82+nmu1) ... Setting up gettext-base (0.19.8.1-8) ... Setting up libpipeline1:i386 (1.5.0-2) ... Setting up m4 (1.4.18-1ubuntu1) ... Setting up libbsd0:i386 (0.9.1-1) ... Setting up libxml2:i386 (2.9.4+dfsg1-7ubuntu2) ... Setting up libmagic-mgc (1:5.34-2) ... Setting up libmagic1:i386 (1:5.34-2) ... Setting up libcroco3:i386 (0.6.12-2) ... Setting up libsubunit-dev:i386 (1.3.0-1) ... Setting up pkg-config (0.29.1-0ubuntu2) ... Setting up ruby-did-you-mean (1.2.1-1) ... Setting up libyaml-0-2:i386 (0.2.1-1) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... Setting up dwz (0.12-2) ... Setting up autotools-dev (20180224.1) ... Setting up ruby-net-telnet (0.1.1-2) ... Setting up check:i386 (0.10.0-3build2) ... Setting up rubygems-integration (1.11) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up ruby-minitest (5.11.3-1) ... Setting up autopoint (0.19.8.1-8) ... Setting up ruby-power-assert (1.1.1-1) ... Setting up zlib1g-dev:i386 (1:1.2.11.dfsg-0ubuntu2) ... Setting up libfile-stripnondeterminism-perl (0.044-1) ... Setting up ruby-test-unit (3.2.8-1) ... Setting up gettext (0.19.8.1-8) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.34-2) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.8.4-3) ... Not building database; man-db/auto-update is not 'true'. Setting up libtool (2.4.6-6) ... Setting up po-debconf (1.0.20) ... Setting up libruby2.5:i386 (2.5.1-6ubuntu2) ... Setting up dh-autoreconf (19) ... Setting up debhelper (11.3.2ubuntu1) ... Setting up ruby2.5 (2.5.1-6ubuntu2) ... Setting up dh-strip-nondeterminism (0.044-1) ... Setting up ruby (1:2.5.1) ... Setting up rake (12.3.1-3) ... Setting up ruby-asciidoctor (1.5.7.1-1) ... Setting up asciidoctor (1.5.7.1-1) ... Setting up sbuild-build-depends-snp-sites-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-138-generic amd64 (i686) Toolchain package versions: binutils_2.31.1-7ubuntu1 dpkg-dev_1.19.0.5ubuntu5 g++-8_8.2.0-9ubuntu1 gcc-8_8.2.0-9ubuntu1 libc6-dev_2.28-0ubuntu1 libstdc++-8-dev_8.2.0-9ubuntu1 libstdc++6_8.2.0-9ubuntu1 linux-libc-dev_4.18.0-11.12 Package versions: adduser_3.117ubuntu1 advancecomp_2.1-1 apt_1.7.0 asciidoctor_1.5.7.1-1 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-8 autotools-dev_20180224.1 base-files_10.1ubuntu8 base-passwd_3.5.45 bash_4.4.18-2ubuntu3 binutils_2.31.1-7ubuntu1 binutils-common_2.31.1-7ubuntu1 binutils-i686-linux-gnu_2.31.1-7ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.32-0.1ubuntu2 build-essential_12.5ubuntu2 bzip2_1.0.6-9 ca-certificates_20180409 check_0.10.0-3build2 coreutils_8.28-1ubuntu2 cpp_4:8.2.0-2ubuntu2 cpp-8_8.2.0-9ubuntu1 d-shlibs_0.82+nmu1 dash_0.5.10.2-1 debconf_1.5.69 debhelper_11.3.2ubuntu1 debianutils_4.8.6 dh-autoreconf_19 dh-strip-nondeterminism_0.044-1 diffutils_1:3.6-1 dmsetup_2:1.02.145-4.1ubuntu4 dpkg_1.19.0.5ubuntu5 dpkg-dev_1.19.0.5ubuntu5 dwz_0.12-2 e2fslibs_1.44.4-2 e2fsprogs_1.44.4-2 fakeroot_1.22-2ubuntu1 fdisk_2.32-0.1ubuntu2 file_1:5.34-2 findutils_4.6.0+git+20181018-1 g++_4:8.2.0-2ubuntu2 g++-8_8.2.0-9ubuntu1 gcc_4:8.2.0-2ubuntu2 gcc-8_8.2.0-9ubuntu1 gcc-8-base_8.2.0-9ubuntu1 gettext_0.19.8.1-8 gettext-base_0.19.8.1-8 gpg_2.2.8-3ubuntu1 gpg-agent_2.2.8-3ubuntu1 gpgconf_2.2.8-3ubuntu1 gpgv_2.2.8-3ubuntu1 grep_3.1-2ubuntu1 groff-base_1.22.3-10 gzip_1.6-5ubuntu2 hostname_3.21 init_1.55 init-system-helpers_1.55 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libapparmor1_2.12-4ubuntu10 libapt-pkg5.0_1.7.0 libarchive-zip-perl_1.64-1 libargon2-1_0~20171227-0.1 libasan5_8.2.0-9ubuntu1 libassuan0_2.5.1-2 libatomic1_8.2.0-9ubuntu1 libattr1_1:2.4.47-2build1 libaudit-common_1:2.8.3-1ubuntu3 libaudit1_1:2.8.3-1ubuntu3 libbinutils_2.31.1-7ubuntu1 libblkid1_2.32-0.1ubuntu2 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-9 libc-bin_2.28-0ubuntu1 libc-dev-bin_2.28-0ubuntu1 libc6_2.28-0ubuntu1 libc6-dev_2.28-0ubuntu1 libcap-ng0_0.7.9-1build1 libcap2_1:2.25-1.2 libcc1-0_8.2.0-9ubuntu1 libcom-err2_1.44.4-2 libcomerr2_1.44.4-2 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.4-2ubuntu2 libdb5.3_5.3.28+dfsg1-0.2 libdebconfclient0_0.244ubuntu1 libdevmapper1.02.1_2:1.02.145-4.1ubuntu4 libdpkg-perl_1.19.0.5ubuntu5 libelf1_0.170-0.5.0ubuntu1 libext2fs2_1.44.4-2 libfakeroot_1.22-2ubuntu1 libfdisk1_2.32-0.1ubuntu2 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.044-1 libgcc-8-dev_8.2.0-9ubuntu1 libgcc1_1:8.2.0-9ubuntu1 libgcrypt20_1.8.3-1ubuntu1 libgdbm-compat4_1.18.1-1 libgdbm5_1.14.1-6 libgdbm6_1.18.1-1 libglib2.0-0_2.58.1-2 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.6.4-2ubuntu1 libgomp1_8.2.0-9ubuntu1 libgpg-error0_1.32-3 libhogweed4_3.4-1 libicu60_60.2-6ubuntu1 libidn11_1.33-2.2ubuntu1 libidn2-0_2.0.5-1 libip4tc0_1.6.1-2ubuntu2 libisl19_0.20-2 libitm1_8.2.0-9ubuntu1 libjson-c3_0.12.1-1.3 libkmod2_25-1ubuntu1.1 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 liblz4-1_1.8.2-1ubuntu1 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.34-2 libmagic1_1:5.34-2 libmount1_2.32-0.1ubuntu2 libmpc3_1.1.0-1 libmpfr6_4.0.1-1 libmpx2_8.2.0-9ubuntu1 libncurses6_6.1+20180210-4ubuntu1 libncursesw6_6.1+20180210-4ubuntu1 libnettle6_3.4-1 libnpth0_1.6-1 libp11-kit0_0.23.14-2 libpam-modules_1.1.8-3.6ubuntu2 libpam-modules-bin_1.1.8-3.6ubuntu2 libpam-runtime_1.1.8-3.6ubuntu2 libpam0g_1.1.8-3.6ubuntu2 libpcre3_2:8.39-11 libperl5.26_5.26.2-7 libperl5.28_5.28.0-3 libpipeline1_1.5.0-2 libpng16-16_1.6.34-2 libprocps7_2:3.3.15-2ubuntu1 libquadmath0_8.2.0-9ubuntu1 libreadline7_7.0-5 libruby2.5_2.5.1-6ubuntu2 libseccomp2_2.3.3-3ubuntu2 libselinux1_2.8-1build2 libsemanage-common_2.8-1build2 libsemanage1_2.8-1build2 libsepol1_2.8-1 libsigsegv2_2.12-2 libslang2_2.3.2-1ubuntu1 libsmartcols1_2.32-0.1ubuntu2 libsqlite3-0_3.25.3-1 libss2_1.44.4-2 libssl1.1_1.1.1-1ubuntu2 libstdc++-8-dev_8.2.0-9ubuntu1 libstdc++6_8.2.0-9ubuntu1 libsubunit-dev_1.3.0-1 libsubunit0_1.3.0-1 libsystemd0_239-7ubuntu10.1 libtasn1-6_4.13-3 libtinfo6_6.1+20180210-4ubuntu1 libtool_2.4.6-6 libubsan1_8.2.0-9ubuntu1 libudev1_239-7ubuntu10.1 libunistring2_0.9.10-1ubuntu1 libusb-0.1-4_2:0.1.12-32 libuuid1_2.32-0.1ubuntu2 libxml2_2.9.4+dfsg1-7ubuntu2 libyaml-0-2_0.2.1-1 libzstd1_1.3.5+dfsg-1ubuntu1 linux-libc-dev_4.18.0-11.12 lockfile-progs_0.1.18 login_1:4.5-1ubuntu1 lsb-base_9.20170808ubuntu1 m4_1.4.18-1ubuntu1 make_4.2.1-1.2 man-db_2.8.4-3 mawk_1.3.3-17ubuntu3 mount_2.32-0.1ubuntu2 multiarch-support_2.28-0ubuntu1 ncurses-base_6.1+20180210-4ubuntu1 ncurses-bin_6.1+20180210-4ubuntu1 openssl_1.1.1-1ubuntu2 optipng_0.7.6-1.1 passwd_1:4.5-1ubuntu1 patch_2.7.6-3 perl_5.28.0-3 perl-base_5.28.0-3 perl-modules-5.26_5.26.2-7 perl-modules-5.28_5.28.0-3 pinentry-curses_1.1.0-1build2 pkg-config_0.29.1-0ubuntu2 pkgbinarymangler_143 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu1 rake_12.3.1-3 readline-common_7.0-5 ruby_1:2.5.1 ruby-asciidoctor_1.5.7.1-1 ruby-did-you-mean_1.2.1-1 ruby-minitest_5.11.3-1 ruby-net-telnet_0.1.1-2 ruby-power-assert_1.1.1-1 ruby-test-unit_3.2.8-1 ruby-xmlrpc_0.3.0-2 ruby2.5_2.5.1-6ubuntu2 rubygems-integration_1.11 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-snp-sites-dummy_0.invalid.0 sed_4.5-2 sensible-utils_0.0.12 systemd_239-7ubuntu10.1 systemd-sysv_239-7ubuntu10.1 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu2 tar_1.30+dfsg-2 tzdata_2018g-1 ubuntu-keyring_2018.09.18.1 util-linux_2.32-0.1ubuntu2 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 zlib1g-dev_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Sat Oct 6 15:56:28 2018 UTC gpgv: using RSA key 5B34BA5AAB5507E903426E85E8D37AE2F09F4872 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./snp-sites_2.4.1-1.dsc dpkg-source: info: extracting snp-sites in snp-sites-2.4.1 dpkg-source: info: unpacking snp-sites_2.4.1.orig.tar.gz dpkg-source: info: unpacking snp-sites_2.4.1-1.debian.tar.xz Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-15636729 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-15636729 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-15636729 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package snp-sites dpkg-buildpackage: info: source version 2.4.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build snp-sites-2.4.1 dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean --with autoreconf dh_clean debian/rules build-arch dh build-arch --with autoreconf dh_update_autotools_config -a dh_autoreconf -a libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:13: installing './compile' configure.ac:7: installing './config.guess' configure.ac:7: installing './config.sub' configure.ac:2: installing './install-sh' configure.ac:2: installing './missing' src/Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' dh_auto_configure -a ./configure --build=i686-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/i386-linux-gnu --libexecdir=\${prefix}/lib/i386-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for CHECK... yes checking whether make supports the include directive... yes (GNU style) checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking math.h usability... yes checking math.h presence... yes checking for math.h... yes checking getopt.h usability... yes checking getopt.h presence... yes checking for getopt.h... yes checking for floor in -lm... yes checking if zlib is wanted... yes checking for inflateEnd in -lz... yes checking for zlib.h... (cached) yes checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert i686-pc-linux-gnu file names to i686-pc-linux-gnu format... func_convert_file_noop checking how to convert i686-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking whether gcc understands -c and -o together... (cached) yes checking dependency style of gcc... (cached) none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode dh_auto_build -a make -j4 make[1]: Entering directory '/<>' make all-recursive make[2]: Entering directory '/<>' Making all in src make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include --std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snp_sites-main.o `test -f 'main.c' || echo './'`main.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o alignment-file.lo alignment-file.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o vcf.lo vcf.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o phylib-of-snp-sites.lo phylib-of-snp-sites.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snp-sites.lo snp-sites.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c phylib-of-snp-sites.c -fPIC -DPIC -o .libs/phylib-of-snp-sites.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c alignment-file.c -fPIC -DPIC -o .libs/alignment-file.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c vcf.c -fPIC -DPIC -o .libs/vcf.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c phylib-of-snp-sites.c -o phylib-of-snp-sites.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c snp-sites.c -fPIC -DPIC -o .libs/snp-sites.o /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fasta-of-snp-sites.lo fasta-of-snp-sites.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c fasta-of-snp-sites.c -fPIC -DPIC -o .libs/fasta-of-snp-sites.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c vcf.c -o vcf.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c snp-sites.c -o snp-sites.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c fasta-of-snp-sites.c -o fasta-of-snp-sites.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c alignment-file.c -o alignment-file.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 1:0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib -o libsnp-sites.la -rpath /usr/lib/i386-linux-gnu alignment-file.lo vcf.lo phylib-of-snp-sites.lo snp-sites.lo fasta-of-snp-sites.lo -lz -lm libtool: link: gcc -shared -fPIC -DPIC .libs/alignment-file.o .libs/vcf.o .libs/phylib-of-snp-sites.o .libs/snp-sites.o .libs/fasta-of-snp-sites.o -L/usr/lib -lz -lm -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libsnp-sites.so.1 -o .libs/libsnp-sites.so.1.0.0 libtool: link: (cd ".libs" && rm -f "libsnp-sites.so.1" && ln -s "libsnp-sites.so.1.0.0" "libsnp-sites.so.1") libtool: link: (cd ".libs" && rm -f "libsnp-sites.so" && ln -s "libsnp-sites.so.1.0.0" "libsnp-sites.so") libtool: link: ar cru .libs/libsnp-sites.a alignment-file.o vcf.o phylib-of-snp-sites.o snp-sites.o fasta-of-snp-sites.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libsnp-sites.a libtool: link: ( cd ".libs" && rm -f "libsnp-sites.la" && ln -s "../libsnp-sites.la" "libsnp-sites.la" ) /bin/bash ../libtool --tag=CC --mode=link gcc --std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib -o snp-sites snp_sites-main.o libsnp-sites.la -lpthread -lz -lm libtool: link: gcc --std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/snp-sites snp_sites-main.o -L/usr/lib ./.libs/libsnp-sites.so -lpthread -lz -lm make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_auto_test -a make -j4 check VERBOSE=1 make[1]: Entering directory '/<>' Making check in src make[2]: Entering directory '/<>/src' make run-all-tests make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ../tests/run_all_tests-check-snp-sites.o `test -f '../tests/check-snp-sites.c' || echo './'`../tests/check-snp-sites.c gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ../tests/run_all_tests-check-vcf.o `test -f '../tests/check-vcf.c' || echo './'`../tests/check-vcf.c gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ../tests/run_all_tests-helper-methods.o `test -f '../tests/helper-methods.c' || echo './'`../tests/helper-methods.c gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ../tests/run_all_tests-run-all-tests.o `test -f '../tests/run-all-tests.c' || echo './'`../tests/run-all-tests.c /bin/bash ../libtool --tag=CC --mode=link gcc -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib -o run-all-tests ../tests/run_all_tests-check-snp-sites.o ../tests/run_all_tests-check-vcf.o ../tests/run_all_tests-helper-methods.o ../tests/run_all_tests-run-all-tests.o libsnp-sites.la -lpthread -lcheck_pic -pthread -lrt -lm -lsubunit -lz -lm libtool: link: gcc -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/run-all-tests ../tests/run_all_tests-check-snp-sites.o ../tests/run_all_tests-check-vcf.o ../tests/run_all_tests-helper-methods.o ../tests/run_all_tests-run-all-tests.o -pthread -L/usr/lib ./.libs/libsnp-sites.so -lpthread -lcheck_pic -lrt -lsubunit -lz -lm -pthread make[3]: Leaving directory '/<>/src' make check-TESTS make[3]: Entering directory '/<>/src' make[4]: Entering directory '/<>/src' PASS: run-all-tests ============================================================================ Testsuite summary for snp-sites 2.4.1 ============================================================================ # TOTAL: 1 # PASS: 1 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[4]: Leaving directory '/<>/src' make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --with autoreconf dh_testroot -a dh_prep -a dh_auto_install -a make -j1 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in src make[2]: Entering directory '/<>/src' make[3]: Entering directory '/<>/src' /bin/mkdir -p '/<>/debian/tmp/usr/lib/i386-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libsnp-sites.la '/<>/debian/tmp/usr/lib/i386-linux-gnu' libtool: install: /usr/bin/install -c .libs/libsnp-sites.so.1.0.0 /<>/debian/tmp/usr/lib/i386-linux-gnu/libsnp-sites.so.1.0.0 libtool: install: (cd /<>/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libsnp-sites.so.1.0.0 libsnp-sites.so.1 || { rm -f libsnp-sites.so.1 && ln -s libsnp-sites.so.1.0.0 libsnp-sites.so.1; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libsnp-sites.so.1.0.0 libsnp-sites.so || { rm -f libsnp-sites.so && ln -s libsnp-sites.so.1.0.0 libsnp-sites.so; }; }) libtool: install: /usr/bin/install -c .libs/libsnp-sites.lai /<>/debian/tmp/usr/lib/i386-linux-gnu/libsnp-sites.la libtool: install: /usr/bin/install -c .libs/libsnp-sites.a /<>/debian/tmp/usr/lib/i386-linux-gnu/libsnp-sites.a libtool: install: chmod 644 /<>/debian/tmp/usr/lib/i386-linux-gnu/libsnp-sites.a libtool: install: ranlib /<>/debian/tmp/usr/lib/i386-linux-gnu/libsnp-sites.a libtool: warning: remember to run 'libtool --finish /usr/lib/i386-linux-gnu' /bin/mkdir -p '/<>/debian/tmp/usr/bin' /bin/bash ../libtool --mode=install /usr/bin/install -c snp-sites '/<>/debian/tmp/usr/bin' libtool: warning: 'libsnp-sites.la' has not been installed in '/usr/lib/i386-linux-gnu' libtool: install: /usr/bin/install -c .libs/snp-sites /<>/debian/tmp/usr/bin/snp-sites /bin/mkdir -p '/<>/debian/tmp/usr/include/snp-sites' /usr/bin/install -c -m 644 alignment-file.h vcf.h phylib-of-snp-sites.h snp-sites.h fasta-of-snp-sites.h kseq.h '/<>/debian/tmp/usr/include/snp-sites' make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install d-shlibmove --commit \ --multiarch \ --exclude-la \ --movedev "debian/tmp/usr/include/snp-sites/*.h" usr/include/snp-sites \ debian/tmp/usr/lib/*/libsnp-sites.so Library package automatic movement utility --> zlib1g-dev package exists. set -e install -d -m 755 debian/libsnp-sites1-dev/usr/lib/i386-linux-gnu install -d -m 755 debian/libsnp-sites1/usr/lib/i386-linux-gnu mv debian/tmp/usr/lib/i386-linux-gnu/libsnp-sites.a debian/libsnp-sites1-dev/usr/lib/i386-linux-gnu mv debian/tmp/usr/lib/i386-linux-gnu/libsnp-sites.so debian/libsnp-sites1-dev/usr/lib/i386-linux-gnu mv /<>/debian/tmp/usr/lib/i386-linux-gnu/libsnp-sites.so.1 debian/libsnp-sites1/usr/lib/i386-linux-gnu mv /<>/debian/tmp/usr/lib/i386-linux-gnu/libsnp-sites.so.1.0.0 debian/libsnp-sites1/usr/lib/i386-linux-gnu PKGDEV=libsnp-sites1-dev PKGSHL=libsnp-sites1 install -d -m 755 debian/libsnp-sites1-dev/usr/include/snp-sites mv debian/tmp/usr/include/snp-sites/*.h debian/libsnp-sites1-dev/usr/include/snp-sites make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a debian/rules override_dh_installman make[1]: Entering directory '/<>' mkdir -p /<>/debian/man asciidoctor -a docdate='' -b manpage /<>/snp-sites.txt mv /<>/snp-sites.1 /<>/debian/man dh_installman -- make[1]: Leaving directory '/<>' dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: Depends field of package libsnp-sites1-dev: unknown substitution variable ${shlibs:Depends} dpkg-gencontrol: warning: package libsnp-sites1-dev: unused substitution variable ${devlibs:Depends} dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 143 INFO: pkgstriptranslations version 143 INFO: pkgstriptranslations version 143 pkgstriptranslations: processing libsnp-sites1 (in debian/libsnp-sites1); do_strip: , oemstrip: pkgstriptranslations: processing libsnp-sites1-dev (in debian/libsnp-sites1-dev); do_strip: , oemstrip: pkgstriptranslations: processing snp-sites (in debian/snp-sites); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libsnp-sites1/DEBIAN/control, package libsnp-sites1, directory debian/libsnp-sites1 INFO: pkgstripfiles: waiting for lock (libsnp-sites1) ... pkgstripfiles: processing control file: debian/libsnp-sites1-dev/DEBIAN/control, package libsnp-sites1-dev, directory debian/libsnp-sites1-dev INFO: pkgstripfiles: waiting for lock (libsnp-sites1-dev) ... INFO: pkgstripfiles: waiting for lock (libsnp-sites1) ... INFO: pkgstripfiles: waiting for lock (libsnp-sites1-dev) ... INFO: pkgstripfiles: waiting for lock (libsnp-sites1) ... INFO: pkgstripfiles: waiting for lock (libsnp-sites1-dev) ... INFO: pkgstripfiles: waiting for lock (libsnp-sites1) ... INFO: pkgstripfiles: waiting for lock (libsnp-sites1-dev) ... INFO: pkgstripfiles: waiting for lock (libsnp-sites1) ... INFO: pkgstripfiles: waiting for lock (libsnp-sites1-dev) ... pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/snp-sites/DEBIAN/control, package snp-sites, directory debian/snp-sites Searching for duplicated docs in dependency libsnp-sites1... symlinking changelog.Debian.gz in snp-sites to file in libsnp-sites1 INFO: pkgstripfiles: waiting for lock (libsnp-sites1) ... pkgstripfiles: Running PNG optimization (using 4 cpus) for package snp-sites ... pkgstripfiles: No PNG files. dpkg-deb: building package 'snp-sites' in '../snp-sites_2.4.1-1_i386.deb'. INFO: pkgstripfiles: waiting for lock (libsnp-sites1-dev) ... INFO: pkgstriptranslations version 143 pkgstriptranslations: processing snp-sites-dbgsym (in debian/.debhelper/snp-sites/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: Truncating usr/share/doc/libsnp-sites1/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package libsnp-sites1 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libsnp-sites1' in '../libsnp-sites1_2.4.1-1_i386.deb'. Searching for duplicated docs in dependency libsnp-sites1... symlinking changelog.Debian.gz in libsnp-sites1-dev to file in libsnp-sites1 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libsnp-sites1-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libsnp-sites1-dev' in '../libsnp-sites1-dev_2.4.1-1_i386.deb'. pkgstripfiles: processing control file: debian/.debhelper/snp-sites/dbgsym-root/DEBIAN/control, package snp-sites-dbgsym, directory debian/.debhelper/snp-sites/dbgsym-root dpkg-deb: building package 'snp-sites-dbgsym' in 'debian/.debhelper/scratch-space/build-snp-sites/snp-sites-dbgsym_2.4.1-1_i386.deb'. Renaming snp-sites-dbgsym_2.4.1-1_i386.deb to snp-sites-dbgsym_2.4.1-1_i386.ddeb INFO: pkgstriptranslations version 143 pkgstriptranslations: processing libsnp-sites1-dbgsym (in debian/.debhelper/libsnp-sites1/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/libsnp-sites1/dbgsym-root/DEBIAN/control, package libsnp-sites1-dbgsym, directory debian/.debhelper/libsnp-sites1/dbgsym-root dpkg-deb: building package 'libsnp-sites1-dbgsym' in 'debian/.debhelper/scratch-space/build-libsnp-sites1/libsnp-sites1-dbgsym_2.4.1-1_i386.deb'. Renaming libsnp-sites1-dbgsym_2.4.1-1_i386.deb to libsnp-sites1-dbgsym_2.4.1-1_i386.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../snp-sites_2.4.1-1_i386.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build snp-sites-2.4.1 dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20181109-1451 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ snp-sites_2.4.1-1_i386.changes: ------------------------------- Format: 1.8 Date: Sat, 06 Oct 2018 17:54:44 +0200 Source: snp-sites Binary: snp-sites libsnp-sites1 libsnp-sites1-dev Architecture: i386 Version: 2.4.1-1 Distribution: disco-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Sascha Steinbiss Description: libsnp-sites1 - Shared libraries of the package snp-sites libsnp-sites1-dev - Static libraries and header files for the package snp-sites snp-sites - Binary code for the package snp-sites Changes: snp-sites (2.4.1-1) unstable; urgency=medium . * New upstream release. Checksums-Sha1: ca1e8293d9fe9152d31b2b29623c5f8ec494c35e 18596 libsnp-sites1-dbgsym_2.4.1-1_i386.ddeb fb10c69aaabce0837e6ce129a9bf1a6fc36ccf2a 14660 libsnp-sites1-dev_2.4.1-1_i386.deb 62997765c8cad59f8618c6cac8158d1e8b92f180 11712 libsnp-sites1_2.4.1-1_i386.deb 4544b421fff99ac4822495f519b84e43f6838d4a 6208 snp-sites-dbgsym_2.4.1-1_i386.ddeb fc82d111b8e07f0efef0b9da849034a24a8ae296 6741 snp-sites_2.4.1-1_i386.buildinfo fc4e48ce250038e6f0e789dcecba150177104db2 10196 snp-sites_2.4.1-1_i386.deb Checksums-Sha256: 40b257f70a0190aa22f283e35050d5692ccab1b92e0918750c0162c5f60e8f8c 18596 libsnp-sites1-dbgsym_2.4.1-1_i386.ddeb 17e4ed990e58d8a02331fc21b66ac1b43660add73d92df288108b4f16912cbba 14660 libsnp-sites1-dev_2.4.1-1_i386.deb c30af2b33a99b5858daf03cb6d0394decd494275c4e2d30ed51bafb5eda6ea3d 11712 libsnp-sites1_2.4.1-1_i386.deb d68f786d7d5594b4b962742e7954715e1aa9b1874a77de92e31f674b660db6d6 6208 snp-sites-dbgsym_2.4.1-1_i386.ddeb 7768d39311691a86256e9e691ff27dbd34169c29d533e7db355e2b4c4b9510dc 6741 snp-sites_2.4.1-1_i386.buildinfo 188f39d02e54adad1ce153cf99d0304991fa70cb0d203bd2ea4b44a1ab414d2d 10196 snp-sites_2.4.1-1_i386.deb Files: 1527bdd3623e80f307c85cef464ae8c4 18596 debug optional libsnp-sites1-dbgsym_2.4.1-1_i386.ddeb 22be085128110ea744e738ad7bcd9a1b 14660 libdevel optional libsnp-sites1-dev_2.4.1-1_i386.deb c887c5d8a04acad477efea02347905df 11712 libs optional libsnp-sites1_2.4.1-1_i386.deb 15b881bed773bc6bf06ecf3391bfb690 6208 debug optional snp-sites-dbgsym_2.4.1-1_i386.ddeb fc98f63a76e1bde89b19319dc047428b 6741 science optional snp-sites_2.4.1-1_i386.buildinfo da182e90734e5f69e586a52734d54c61 10196 science optional snp-sites_2.4.1-1_i386.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libsnp-sites1-dev_2.4.1-1_i386.deb ---------------------------------- new debian package, version 2.0. size 14660 bytes: control archive=1152 bytes. 1032 bytes, 25 lines control 649 bytes, 9 lines md5sums Package: libsnp-sites1-dev Source: snp-sites Version: 2.4.1-1 Architecture: i386 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 63 Depends: libsnp-sites1 (= 2.4.1-1) Conflicts: libsnp-sites-dev Provides: libsnp-sites-dev Section: libdevel Priority: optional Homepage: https://github.com/sanger-pathogens/snp-sites Description: Static libraries and header files for the package snp-sites Snp-sites finds single nucleotide polymorphism (SNP) sites from multi-fasta alignment input files (which might be compressed). Its output can be in various widely used formats (Multi Fasta Alignment, Vcf, phylip). . The software has been developed at the Wellcome Trust Sanger Institute. . This package contains the development files to include snp-sites into your own code. The library enables Python developers to make snp-sites function calls (Python bindings) through the Boost Python Library. drwxr-xr-x root/root 0 2018-10-06 15:54 ./ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/include/ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/include/snp-sites/ -rw-r--r-- root/root 1365 2018-10-06 15:54 ./usr/include/snp-sites/alignment-file.h -rw-r--r-- root/root 1145 2018-10-06 15:54 ./usr/include/snp-sites/fasta-of-snp-sites.h -rw-r--r-- root/root 8809 2018-10-06 15:54 ./usr/include/snp-sites/kseq.h -rw-r--r-- root/root 1149 2018-10-06 15:54 ./usr/include/snp-sites/phylib-of-snp-sites.h -rw-r--r-- root/root 2050 2018-10-06 15:54 ./usr/include/snp-sites/snp-sites.h -rw-r--r-- root/root 2005 2018-10-06 15:54 ./usr/include/snp-sites/vcf.h drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/lib/ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/lib/i386-linux-gnu/ -rw-r--r-- root/root 26684 2018-10-06 15:54 ./usr/lib/i386-linux-gnu/libsnp-sites.a lrwxrwxrwx root/root 0 2018-10-06 15:54 ./usr/lib/i386-linux-gnu/libsnp-sites.so -> libsnp-sites.so.1.0.0 drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/share/ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/share/doc/libsnp-sites1-dev/ -rw-r--r-- root/root 504 2018-10-06 15:54 ./usr/share/doc/libsnp-sites1-dev/README.Debian lrwxrwxrwx root/root 0 2018-10-06 15:54 ./usr/share/doc/libsnp-sites1-dev/changelog.Debian.gz -> ../libsnp-sites1/changelog.Debian.gz -rw-r--r-- root/root 2334 2018-10-06 15:54 ./usr/share/doc/libsnp-sites1-dev/copyright libsnp-sites1_2.4.1-1_i386.deb ------------------------------ new debian package, version 2.0. size 11712 bytes: control archive=988 bytes. 810 bytes, 20 lines control 233 bytes, 3 lines md5sums 29 bytes, 1 lines shlibs 74 bytes, 2 lines triggers Package: libsnp-sites1 Source: snp-sites Version: 2.4.1-1 Architecture: i386 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 41 Depends: libc6 (>= 2.4), zlib1g (>= 1:1.1.4) Section: libs Priority: optional Homepage: https://github.com/sanger-pathogens/snp-sites Description: Shared libraries of the package snp-sites Snp-sites finds single nucleotide polymorphism (SNP) sites from multi-fasta alignment input files (which might be compressed). Its output can be in various widely used formats (Multi Fasta Alignment, Vcf, phylip). . The software has been developed at the Wellcome Trust Sanger Institute. . This package contains the dynamic library uses by snp-sites. drwxr-xr-x root/root 0 2018-10-06 15:54 ./ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/lib/ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/lib/i386-linux-gnu/ lrwxrwxrwx root/root 0 2018-10-06 15:54 ./usr/lib/i386-linux-gnu/libsnp-sites.so.1 -> libsnp-sites.so.1.0.0 -rw-r--r-- root/root 25852 2018-10-06 15:54 ./usr/lib/i386-linux-gnu/libsnp-sites.so.1.0.0 drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/share/ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/share/doc/libsnp-sites1/ -rw-r--r-- root/root 696 2018-10-06 15:54 ./usr/share/doc/libsnp-sites1/changelog.Debian.gz -rw-r--r-- root/root 2334 2018-10-06 15:54 ./usr/share/doc/libsnp-sites1/copyright snp-sites_2.4.1-1_i386.deb -------------------------- new debian package, version 2.0. size 10196 bytes: control archive=1148 bytes. 1216 bytes, 25 lines control 331 bytes, 5 lines md5sums Package: snp-sites Version: 2.4.1-1 Architecture: i386 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 33 Depends: libc6 (>= 2.4), libsnp-sites1 Section: science Priority: optional Homepage: https://github.com/sanger-pathogens/snp-sites Description: Binary code for the package snp-sites This program finds single nucleotide polymorphism (SNP) sites from multi-fasta alignment input files (which might be compressed). Its output can be in various widely used formats (Multi Fasta Alignment, Vcf, phylip). . The software has been developed at the Wellcome Trust Sanger Institute. . A Single Nucleotide - polymorphism (SNP, pronounced snip; plural snips) is a DNA sequence variation occurring when a Single Nucleotide — A, T, C or G — in the genome (or other shared sequence) differs between members of a biological species or paired chromosomes. For example, two sequenced DNA fragments from different individuals, AAGCCTA to AAGCTTA, contain a difference in a single nucleotide. In this case there are two alleles. Almost all common SNPs have only two alleles. drwxr-xr-x root/root 0 2018-10-06 15:54 ./ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/bin/ -rwxr-xr-x root/root 13672 2018-10-06 15:54 ./usr/bin/snp-sites drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/share/ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/share/doc/snp-sites/ -rw-r--r-- root/root 378 2018-10-06 15:54 ./usr/share/doc/snp-sites/README.Debian -rw-r--r-- root/root 2572 2018-10-04 10:37 ./usr/share/doc/snp-sites/README.md.gz lrwxrwxrwx root/root 0 2018-10-06 15:54 ./usr/share/doc/snp-sites/changelog.Debian.gz -> ../libsnp-sites1/changelog.Debian.gz -rw-r--r-- root/root 2334 2018-10-06 15:54 ./usr/share/doc/snp-sites/copyright drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/share/man/ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/share/man/man1/ -rw-r--r-- root/root 1396 2018-10-06 15:54 ./usr/share/man/man1/snp-sites.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: i386 Build-Space: 21648 Build-Time: 35 Distribution: disco-proposed Host Architecture: i386 Install-Time: 17 Job: snp-sites_2.4.1-1.dsc Machine Architecture: amd64 Package: snp-sites Package-Time: 53 Source-Version: 2.4.1-1 Space: 21648 Status: successful Version: 2.4.1-1 -------------------------------------------------------------------------------- Finished at 20181109-1451 Build needed 00:00:53, 21648k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=disco --arch=i386 PACKAGEBUILD-15636729 Scanning for processes to kill in build PACKAGEBUILD-15636729