https://launchpad.net/ubuntu/+source/snp-sites/2.4.1-1/+build/15636728 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux bos02-arm64-027 4.4.0-138-generic #164-Ubuntu SMP Tue Oct 2 17:15:48 UTC 2018 aarch64 Buildd toolchain package versions: launchpad-buildd_165 python-lpbuildd_165 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.5 dpkg-dev_1.18.4ubuntu1.5 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 9 Nov 21:58:00 ntpdate[1837]: adjust time server 10.211.37.1 offset 0.000233 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=disco --arch=armhf PACKAGEBUILD-15636728 /home/buildd/filecache-default/c94e68d26d8f9980ef1477bde7a83b553e812c5f Creating target for build PACKAGEBUILD-15636728 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=disco --arch=armhf PACKAGEBUILD-15636728 Starting target for build PACKAGEBUILD-15636728 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=disco --arch=armhf PACKAGEBUILD-15636728 'deb http://ftpmaster.internal/ubuntu disco main universe' 'deb http://ftpmaster.internal/ubuntu disco-security main universe' 'deb http://ftpmaster.internal/ubuntu disco-updates main universe' 'deb http://ftpmaster.internal/ubuntu disco-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-15636728 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=disco --arch=armhf PACKAGEBUILD-15636728 Updating target for build PACKAGEBUILD-15636728 Get:1 http://ftpmaster.internal/ubuntu disco InRelease [243 kB] Get:2 http://ftpmaster.internal/ubuntu disco-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu disco-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu disco-proposed InRelease [93.2 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main armhf Packages [968 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main Translation-en [513 kB] Get:7 http://ftpmaster.internal/ubuntu disco/universe armhf Packages [8425 kB] Get:8 http://ftpmaster.internal/ubuntu disco/universe Translation-en [5037 kB] Get:9 http://ftpmaster.internal/ubuntu disco-proposed/main armhf Packages [100 kB] Get:10 http://ftpmaster.internal/ubuntu disco-proposed/main Translation-en [66.5 kB] Get:11 http://ftpmaster.internal/ubuntu disco-proposed/universe armhf Packages [515 kB] Get:12 http://ftpmaster.internal/ubuntu disco-proposed/universe Translation-en [466 kB] Fetched 16.6 MB in 6s (2634 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libgdbm5 libperl5.26 perl-modules-5.26 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libgdbm6 libperl5.28 perl-modules-5.28 The following packages will be upgraded: base-files binutils binutils-arm-linux-gnueabihf binutils-common cpp cpp-8 dash dmsetup findutils g++ g++-8 gcc gcc-8 gcc-8-base hostname init init-system-helpers libapparmor1 libasan5 libatomic1 libaudit-common libaudit1 libbinutils libcap-ng0 libcc1-0 libdb5.3 libdevmapper1.02.1 libgcc-8-dev libgcc1 libgdbm-compat4 libgomp1 libgpg-error0 libkmod2 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsqlite3-0 libstdc++-8-dev libstdc++6 libsystemd0 libubsan1 libudev1 linux-libc-dev lockfile-progs perl perl-base sed systemd systemd-sysv tzdata 51 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 38.4 MB of archives. After this operation, 40.7 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu disco/main armhf base-files armhf 10.1ubuntu8 [59.8 kB] Get:2 http://ftpmaster.internal/ubuntu disco/main armhf dash armhf 0.5.10.2-1 [81.2 kB] Get:3 http://ftpmaster.internal/ubuntu disco-proposed/main armhf findutils armhf 4.6.0+git+20181018-1 [279 kB] Get:4 http://ftpmaster.internal/ubuntu disco/main armhf hostname armhf 3.21 [10.3 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main armhf perl-modules-5.28 all 5.28.0-3 [2818 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main armhf libgdbm6 armhf 1.18.1-1 [24.8 kB] Get:7 http://ftpmaster.internal/ubuntu disco/main armhf libgdbm-compat4 armhf 1.18.1-1 [5784 B] Get:8 http://ftpmaster.internal/ubuntu disco/main armhf libperl5.28 armhf 5.28.0-3 [3153 kB] Get:9 http://ftpmaster.internal/ubuntu disco/main armhf perl armhf 5.28.0-3 [204 kB] Get:10 http://ftpmaster.internal/ubuntu disco/main armhf perl-base armhf 5.28.0-3 [1397 kB] Get:11 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libdb5.3 armhf 5.3.28+dfsg1-0.2 [590 kB] Get:12 http://ftpmaster.internal/ubuntu disco-proposed/main armhf sed armhf 4.5-2 [178 kB] Get:13 http://ftpmaster.internal/ubuntu disco-proposed/main armhf init-system-helpers all 1.55 [38.5 kB] Get:14 http://ftpmaster.internal/ubuntu disco-proposed/main armhf systemd-sysv armhf 239-7ubuntu10.1 [9404 B] Get:15 http://ftpmaster.internal/ubuntu disco/main armhf libapparmor1 armhf 2.12-4ubuntu10 [25.7 kB] Get:16 http://ftpmaster.internal/ubuntu disco/main armhf libaudit-common all 1:2.8.3-1ubuntu3 [4068 B] Get:17 http://ftpmaster.internal/ubuntu disco/main armhf libcap-ng0 armhf 0.7.9-1build1 [9600 B] Get:18 http://ftpmaster.internal/ubuntu disco/main armhf libaudit1 armhf 1:2.8.3-1ubuntu3 [35.5 kB] Get:19 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libgpg-error0 armhf 1.32-3 [48.1 kB] Get:20 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libkmod2 armhf 25-1ubuntu1.1 [35.7 kB] Get:21 http://ftpmaster.internal/ubuntu disco-proposed/main armhf systemd armhf 239-7ubuntu10.1 [2804 kB] Get:22 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libsystemd0 armhf 239-7ubuntu10.1 [191 kB] Get:23 http://ftpmaster.internal/ubuntu disco-proposed/main armhf init armhf 1.55 [6476 B] Get:24 http://ftpmaster.internal/ubuntu disco/main armhf libcc1-0 armhf 8.2.0-9ubuntu1 [32.5 kB] Get:25 http://ftpmaster.internal/ubuntu disco/main armhf libgomp1 armhf 8.2.0-9ubuntu1 [66.6 kB] Get:26 http://ftpmaster.internal/ubuntu disco/main armhf libatomic1 armhf 8.2.0-9ubuntu1 [7068 B] Get:27 http://ftpmaster.internal/ubuntu disco/main armhf libasan5 armhf 8.2.0-9ubuntu1 [349 kB] Get:28 http://ftpmaster.internal/ubuntu disco/main armhf libubsan1 armhf 8.2.0-9ubuntu1 [109 kB] Get:29 http://ftpmaster.internal/ubuntu disco/main armhf gcc-8-base armhf 8.2.0-9ubuntu1 [18.6 kB] Get:30 http://ftpmaster.internal/ubuntu disco/main armhf libstdc++6 armhf 8.2.0-9ubuntu1 [350 kB] Get:31 http://ftpmaster.internal/ubuntu disco/main armhf g++-8 armhf 8.2.0-9ubuntu1 [6431 kB] Get:32 http://ftpmaster.internal/ubuntu disco/main armhf libstdc++-8-dev armhf 8.2.0-9ubuntu1 [1594 kB] Get:33 http://ftpmaster.internal/ubuntu disco/main armhf libgcc-8-dev armhf 8.2.0-9ubuntu1 [632 kB] Get:34 http://ftpmaster.internal/ubuntu disco/main armhf gcc-8 armhf 8.2.0-9ubuntu1 [6349 kB] Get:35 http://ftpmaster.internal/ubuntu disco/main armhf cpp-8 armhf 8.2.0-9ubuntu1 [5643 kB] Get:36 http://ftpmaster.internal/ubuntu disco/main armhf libgcc1 armhf 1:8.2.0-9ubuntu1 [37.1 kB] Get:37 http://ftpmaster.internal/ubuntu disco/main armhf libbinutils armhf 2.31.1-7ubuntu1 [309 kB] Get:38 http://ftpmaster.internal/ubuntu disco/main armhf binutils-common armhf 2.31.1-7ubuntu1 [194 kB] Get:39 http://ftpmaster.internal/ubuntu disco/main armhf binutils armhf 2.31.1-7ubuntu1 [3360 B] Get:40 http://ftpmaster.internal/ubuntu disco/main armhf binutils-arm-linux-gnueabihf armhf 2.31.1-7ubuntu1 [2144 kB] Get:41 http://ftpmaster.internal/ubuntu disco/main armhf libselinux1 armhf 2.8-1build2 [59.1 kB] Get:42 http://ftpmaster.internal/ubuntu disco/main armhf libsemanage-common all 2.8-1build2 [6892 B] Get:43 http://ftpmaster.internal/ubuntu disco/main armhf libsemanage1 armhf 2.8-1build2 [72.5 kB] Get:44 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libudev1 armhf 239-7ubuntu10.1 [48.3 kB] Get:45 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libseccomp2 armhf 2.3.3-3ubuntu2 [30.5 kB] Get:46 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libdevmapper1.02.1 armhf 2:1.02.145-4.1ubuntu4 [118 kB] Get:47 http://ftpmaster.internal/ubuntu disco-proposed/main armhf dmsetup armhf 2:1.02.145-4.1ubuntu4 [73.6 kB] Get:48 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libsqlite3-0 armhf 3.25.3-1 [447 kB] Get:49 http://ftpmaster.internal/ubuntu disco/main armhf tzdata all 2018g-1 [188 kB] Get:50 http://ftpmaster.internal/ubuntu disco/main armhf g++ armhf 4:8.2.0-2ubuntu2 [1616 B] Get:51 http://ftpmaster.internal/ubuntu disco/main armhf gcc armhf 4:8.2.0-2ubuntu2 [5236 B] Get:52 http://ftpmaster.internal/ubuntu disco/main armhf cpp armhf 4:8.2.0-2ubuntu2 [27.6 kB] Get:53 http://ftpmaster.internal/ubuntu disco-proposed/main armhf linux-libc-dev armhf 4.18.0-11.12 [1022 kB] Get:54 http://ftpmaster.internal/ubuntu disco/main armhf lockfile-progs armhf 0.1.18 [9372 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 38.4 MB in 1s (28.0 MB/s) (Reading database ... 12387 files and directories currently installed.) Preparing to unpack .../base-files_10.1ubuntu8_armhf.deb ... Unpacking base-files (10.1ubuntu8) over (10.1ubuntu7) ... Setting up base-files (10.1ubuntu8) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... 12387 files and directories currently installed.) Preparing to unpack .../dash_0.5.10.2-1_armhf.deb ... Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' Unpacking dash (0.5.10.2-1) over (0.5.8-2.10) ... Setting up dash (0.5.10.2-1) ... Removing 'diversion of /bin/sh to /bin/sh.distrib by bash' Adding 'diversion of /bin/sh to /bin/sh.distrib by dash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' (Reading database ... 12387 files and directories currently installed.) Preparing to unpack .../findutils_4.6.0+git+20181018-1_armhf.deb ... Unpacking findutils (4.6.0+git+20181018-1) over (4.6.0+git+20180808-2) ... Setting up findutils (4.6.0+git+20181018-1) ... (Reading database ... 12387 files and directories currently installed.) Preparing to unpack .../hostname_3.21_armhf.deb ... Unpacking hostname (3.21) over (3.20) ... Setting up hostname (3.21) ... (Reading database ... 12387 files and directories currently installed.) Preparing to unpack .../0-perl_5.28.0-3_armhf.deb ... Unpacking perl (5.28.0-3) over (5.26.2-7) ... 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Setting up cpp (4:8.2.0-2ubuntu2) ... Setting up libcc1-0:armhf (8.2.0-9ubuntu1) ... Setting up tzdata (2018g-1) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Nov 9 21:58:35 UTC 2018. Universal Time is now: Fri Nov 9 21:58:35 UTC 2018. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up init (1.55) ... Setting up linux-libc-dev:armhf (4.18.0-11.12) ... Setting up libdevmapper1.02.1:armhf (2:1.02.145-4.1ubuntu4) ... Setting up libgdbm6:armhf (1.18.1-1) ... Setting up binutils-common:armhf (2.31.1-7ubuntu1) ... Setting up perl-modules-5.28 (5.28.0-3) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... Setting up libsqlite3-0:armhf (3.25.3-1) ... Setting up dmsetup (2:1.02.145-4.1ubuntu4) ... Setting up libgdbm-compat4:armhf (1.18.1-1) ... Setting up lockfile-progs (0.1.18) ... Setting up libasan5:armhf (8.2.0-9ubuntu1) ... Setting up libubsan1:armhf (8.2.0-9ubuntu1) ... Setting up libbinutils:armhf (2.31.1-7ubuntu1) ... Setting up libperl5.28:armhf (5.28.0-3) ... Setting up binutils-arm-linux-gnueabihf (2.31.1-7ubuntu1) ... Setting up perl (5.28.0-3) ... Setting up libgcc-8-dev:armhf (8.2.0-9ubuntu1) ... Setting up binutils (2.31.1-7ubuntu1) ... Setting up libstdc++-8-dev:armhf (8.2.0-9ubuntu1) ... Setting up gcc-8 (8.2.0-9ubuntu1) ... Setting up g++-8 (8.2.0-9ubuntu1) ... Setting up gcc (4:8.2.0-2ubuntu2) ... Setting up g++ (4:8.2.0-2ubuntu2) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-15636728 armhf disco-proposed -c chroot:build-PACKAGEBUILD-15636728 --arch=armhf --dist=disco-proposed --nolog snp-sites_2.4.1-1.dsc Initiating build PACKAGEBUILD-15636728 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-138-generic #164-Ubuntu SMP Tue Oct 2 17:15:48 UTC 2018 armv7l sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-arm64-027.buildd +==============================================================================+ | snp-sites 2.4.1-1 (armhf) 09 Nov 2018 21:58 | +==============================================================================+ Package: snp-sites Version: 2.4.1-1 Source Version: 2.4.1-1 Distribution: disco-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf I: NOTICE: Log filtering will replace 'build/snp-sites-mcl8RO/snp-sites-2.4.1' with '<>' I: NOTICE: Log filtering will replace 'build/snp-sites-mcl8RO' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-15636728/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- snp-sites_2.4.1-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-2iBFi3/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-2iBFi3/apt_archive ./ InRelease Get:2 copy:/<>/resolver-2iBFi3/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-2iBFi3/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-2iBFi3/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-2iBFi3/apt_archive ./ Packages [527 B] Fetched 2860 B in 0s (121 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libgdbm5 libperl5.26 perl-modules-5.26 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 856 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-2iBFi3/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [856 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 856 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14274 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11), zlib1g-dev, check, pkg-config, d-shlibs, asciidoctor Filtered Build-Depends: debhelper (>= 11), zlib1g-dev, check, pkg-config, d-shlibs, asciidoctor dpkg-deb: building package 'sbuild-build-depends-snp-sites-dummy' in '/<>/resolver-PQHlbz/apt_archive/sbuild-build-depends-snp-sites-dummy.deb'. Ign:1 copy:/<>/resolver-PQHlbz/apt_archive ./ InRelease Get:2 copy:/<>/resolver-PQHlbz/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-PQHlbz/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-PQHlbz/apt_archive ./ Sources [246 B] Get:5 copy:/<>/resolver-PQHlbz/apt_archive ./ Packages [568 B] Fetched 2933 B in 0s (139 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install snp-sites build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libgdbm5 libperl5.26 perl-modules-5.26 Use 'apt autoremove' to remove them. The following additional packages will be installed: asciidoctor autoconf automake autopoint autotools-dev bsdmainutils check d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libicu60 libmagic-mgc libmagic1 libpipeline1 libruby2.5 libsigsegv2 libsubunit-dev libsubunit0 libtool libxml2 libyaml-0-2 m4 man-db pkg-config po-debconf rake ruby ruby-asciidoctor ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert ruby-test-unit ruby-xmlrpc ruby2.5 rubygems-integration zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl ri ruby-dev bundler Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl zip fonts-lato libjs-jquery The following NEW packages will be installed: asciidoctor autoconf automake autopoint autotools-dev bsdmainutils check d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libicu60 libmagic-mgc libmagic1 libpipeline1 libruby2.5 libsigsegv2 libsubunit-dev libsubunit0 libtool libxml2 libyaml-0-2 m4 man-db pkg-config po-debconf rake ruby ruby-asciidoctor ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert ruby-test-unit ruby-xmlrpc ruby2.5 rubygems-integration sbuild-build-depends-snp-sites-dummy zlib1g-dev 0 upgraded, 51 newly installed, 0 to remove and 0 not upgraded. Need to get 19.6 MB of archives. After this operation, 73.4 MB of additional disk space will be used. Get:1 copy:/<>/resolver-PQHlbz/apt_archive ./ sbuild-build-depends-snp-sites-dummy 0.invalid.0 [896 B] Get:2 http://ftpmaster.internal/ubuntu disco/main armhf libbsd0 armhf 0.9.1-1 [43.1 kB] Get:3 http://ftpmaster.internal/ubuntu disco/main armhf bsdmainutils armhf 11.1.2ubuntu2 [176 kB] Get:4 http://ftpmaster.internal/ubuntu disco/main armhf groff-base armhf 1.22.3-10 [1013 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main armhf libpipeline1 armhf 1.5.0-2 [21.5 kB] Get:6 http://ftpmaster.internal/ubuntu disco-proposed/main armhf man-db armhf 2.8.4-3 [1003 kB] Get:7 http://ftpmaster.internal/ubuntu disco/main armhf libmagic-mgc armhf 1:5.34-2 [197 kB] Get:8 http://ftpmaster.internal/ubuntu disco/main armhf libmagic1 armhf 1:5.34-2 [65.3 kB] Get:9 http://ftpmaster.internal/ubuntu disco/main armhf file armhf 1:5.34-2 [21.9 kB] Get:10 http://ftpmaster.internal/ubuntu disco/main armhf libelf1 armhf 0.170-0.5.0ubuntu1 [40.8 kB] Get:11 http://ftpmaster.internal/ubuntu disco/main armhf libglib2.0-0 armhf 2.58.1-2 [1024 kB] Get:12 http://ftpmaster.internal/ubuntu disco/main armhf libicu60 armhf 60.2-6ubuntu1 [7801 kB] Get:13 http://ftpmaster.internal/ubuntu disco/main armhf libxml2 armhf 2.9.4+dfsg1-7ubuntu2 [533 kB] Get:14 http://ftpmaster.internal/ubuntu disco/main armhf libyaml-0-2 armhf 0.2.1-1 [40.1 kB] Get:15 http://ftpmaster.internal/ubuntu disco/main armhf gettext-base armhf 0.19.8.1-8 [45.9 kB] Get:16 http://ftpmaster.internal/ubuntu disco/main armhf rubygems-integration all 1.11 [4994 B] Get:17 http://ftpmaster.internal/ubuntu disco/main armhf rake all 12.3.1-3 [44.9 kB] Get:18 http://ftpmaster.internal/ubuntu disco/main armhf ruby-did-you-mean all 1.2.1-1 [9828 B] Get:19 http://ftpmaster.internal/ubuntu disco/main armhf ruby-minitest all 5.11.3-1 [39.4 kB] Get:20 http://ftpmaster.internal/ubuntu disco/main armhf ruby-net-telnet all 0.1.1-2 [12.6 kB] Get:21 http://ftpmaster.internal/ubuntu disco/main armhf ruby-power-assert all 1.1.1-1 [11.0 kB] Get:22 http://ftpmaster.internal/ubuntu disco/main armhf ruby-test-unit all 3.2.8-1 [61.4 kB] Get:23 http://ftpmaster.internal/ubuntu disco/main armhf ruby-xmlrpc all 0.3.0-2 [23.8 kB] Get:24 http://ftpmaster.internal/ubuntu disco/main armhf libruby2.5 armhf 2.5.1-6ubuntu2 [2841 kB] Get:25 http://ftpmaster.internal/ubuntu disco/main armhf ruby2.5 armhf 2.5.1-6ubuntu2 [48.5 kB] Get:26 http://ftpmaster.internal/ubuntu disco/main armhf ruby armhf 1:2.5.1 [5712 B] Get:27 http://ftpmaster.internal/ubuntu disco/universe armhf ruby-asciidoctor all 1.5.7.1-1 [157 kB] Get:28 http://ftpmaster.internal/ubuntu disco/universe armhf asciidoctor armhf 1.5.7.1-1 [37.4 kB] Get:29 http://ftpmaster.internal/ubuntu disco/main armhf libsigsegv2 armhf 2.12-2 [13.1 kB] Get:30 http://ftpmaster.internal/ubuntu disco/main armhf m4 armhf 1.4.18-1ubuntu1 [186 kB] Get:31 http://ftpmaster.internal/ubuntu disco/main armhf autoconf all 2.69-11 [322 kB] Get:32 http://ftpmaster.internal/ubuntu disco/main armhf autotools-dev all 20180224.1 [39.6 kB] Get:33 http://ftpmaster.internal/ubuntu disco-proposed/main armhf automake all 1:1.16.1-4 [522 kB] Get:34 http://ftpmaster.internal/ubuntu disco/main armhf autopoint all 0.19.8.1-8 [412 kB] Get:35 http://ftpmaster.internal/ubuntu disco/main armhf libsubunit0 armhf 1.3.0-1 [6876 B] Get:36 http://ftpmaster.internal/ubuntu disco/main armhf libsubunit-dev armhf 1.3.0-1 [5964 B] Get:37 http://ftpmaster.internal/ubuntu disco/universe armhf check armhf 0.10.0-3build2 [162 kB] Get:38 http://ftpmaster.internal/ubuntu disco/universe armhf d-shlibs all 0.82+nmu1 [10.2 kB] Get:39 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libtool all 2.4.6-6 [195 kB] Get:40 http://ftpmaster.internal/ubuntu disco/main armhf dh-autoreconf all 19 [16.1 kB] Get:41 http://ftpmaster.internal/ubuntu disco/main armhf libarchive-zip-perl all 1.64-1 [84.9 kB] Get:42 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libfile-stripnondeterminism-perl all 0.044-1 [15.0 kB] Get:43 http://ftpmaster.internal/ubuntu disco-proposed/main armhf dh-strip-nondeterminism all 0.044-1 [5124 B] Get:44 http://ftpmaster.internal/ubuntu disco/main armhf dwz armhf 0.12-2 [72.0 kB] Get:45 http://ftpmaster.internal/ubuntu disco/main armhf libcroco3 armhf 0.6.12-2 [69.4 kB] Get:46 http://ftpmaster.internal/ubuntu disco/main armhf gettext armhf 0.19.8.1-8 [833 kB] Get:47 http://ftpmaster.internal/ubuntu disco/main armhf intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:48 http://ftpmaster.internal/ubuntu disco/main armhf po-debconf all 1.0.20 [232 kB] Get:49 http://ftpmaster.internal/ubuntu disco/main armhf debhelper all 11.3.2ubuntu1 [883 kB] Get:50 http://ftpmaster.internal/ubuntu disco/main armhf pkg-config armhf 0.29.1-0ubuntu2 [42.0 kB] Get:51 http://ftpmaster.internal/ubuntu disco/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-0ubuntu2 [168 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 19.6 MB in 1s (27.7 MB/s) Selecting previously unselected package libbsd0:armhf. (Reading database ... 14274 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-1_armhf.deb ... Unpacking libbsd0:armhf (0.9.1-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2ubuntu2_armhf.deb ... Unpacking bsdmainutils (11.1.2ubuntu2) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.3-10_armhf.deb ... Unpacking groff-base (1.22.3-10) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../03-libpipeline1_1.5.0-2_armhf.deb ... Unpacking libpipeline1:armhf (1.5.0-2) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.8.4-3_armhf.deb ... Unpacking man-db (2.8.4-3) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../05-libmagic-mgc_1%3a5.34-2_armhf.deb ... Unpacking libmagic-mgc (1:5.34-2) ... Selecting previously unselected package libmagic1:armhf. 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Selecting previously unselected package libcroco3:armhf. Preparing to unpack .../43-libcroco3_0.6.12-2_armhf.deb ... Unpacking libcroco3:armhf (0.6.12-2) ... Selecting previously unselected package gettext. Preparing to unpack .../44-gettext_0.19.8.1-8_armhf.deb ... Unpacking gettext (0.19.8.1-8) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../45-intltool-debian_0.35.0+20060710.4_all.deb ... Unpacking intltool-debian (0.35.0+20060710.4) ... Selecting previously unselected package po-debconf. Preparing to unpack .../46-po-debconf_1.0.20_all.deb ... Unpacking po-debconf (1.0.20) ... Selecting previously unselected package debhelper. Preparing to unpack .../47-debhelper_11.3.2ubuntu1_all.deb ... Unpacking debhelper (11.3.2ubuntu1) ... Selecting previously unselected package pkg-config. Preparing to unpack .../48-pkg-config_0.29.1-0ubuntu2_armhf.deb ... Unpacking pkg-config (0.29.1-0ubuntu2) ... Selecting previously unselected package zlib1g-dev:armhf. 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Setting up libmagic-mgc (1:5.34-2) ... Setting up libmagic1:armhf (1:5.34-2) ... Setting up libcroco3:armhf (0.6.12-2) ... Setting up libsubunit-dev:armhf (1.3.0-1) ... Setting up pkg-config (0.29.1-0ubuntu2) ... Setting up ruby-did-you-mean (1.2.1-1) ... Setting up libyaml-0-2:armhf (0.2.1-1) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... Setting up dwz (0.12-2) ... Setting up autotools-dev (20180224.1) ... Setting up ruby-net-telnet (0.1.1-2) ... Setting up check:armhf (0.10.0-3build2) ... Setting up rubygems-integration (1.11) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up ruby-minitest (5.11.3-1) ... Setting up autopoint (0.19.8.1-8) ... Setting up ruby-power-assert (1.1.1-1) ... Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-0ubuntu2) ... Setting up libfile-stripnondeterminism-perl (0.044-1) ... Setting up ruby-test-unit (3.2.8-1) ... Setting up gettext (0.19.8.1-8) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.34-2) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.8.4-3) ... Not building database; man-db/auto-update is not 'true'. Setting up libtool (2.4.6-6) ... Setting up po-debconf (1.0.20) ... Setting up libruby2.5:armhf (2.5.1-6ubuntu2) ... Setting up dh-autoreconf (19) ... Setting up debhelper (11.3.2ubuntu1) ... Setting up ruby2.5 (2.5.1-6ubuntu2) ... Setting up dh-strip-nondeterminism (0.044-1) ... Setting up ruby (1:2.5.1) ... Setting up rake (12.3.1-3) ... Setting up ruby-asciidoctor (1.5.7.1-1) ... Setting up asciidoctor (1.5.7.1-1) ... Setting up sbuild-build-depends-snp-sites-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-138-generic arm64 (armv7l) Toolchain package versions: binutils_2.31.1-7ubuntu1 dpkg-dev_1.19.0.5ubuntu5 g++-8_8.2.0-9ubuntu1 gcc-8_8.2.0-9ubuntu1 libc6-dev_2.28-0ubuntu1 libstdc++-8-dev_8.2.0-9ubuntu1 libstdc++6_8.2.0-9ubuntu1 linux-libc-dev_4.18.0-11.12 Package versions: adduser_3.117ubuntu1 advancecomp_2.1-1 apt_1.7.0 asciidoctor_1.5.7.1-1 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-8 autotools-dev_20180224.1 base-files_10.1ubuntu8 base-passwd_3.5.45 bash_4.4.18-2ubuntu3 binutils_2.31.1-7ubuntu1 binutils-arm-linux-gnueabihf_2.31.1-7ubuntu1 binutils-common_2.31.1-7ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.32-0.1ubuntu2 build-essential_12.5ubuntu2 bzip2_1.0.6-9 ca-certificates_20180409 check_0.10.0-3build2 coreutils_8.28-1ubuntu2 cpp_4:8.2.0-2ubuntu2 cpp-8_8.2.0-9ubuntu1 d-shlibs_0.82+nmu1 dash_0.5.10.2-1 debconf_1.5.69 debhelper_11.3.2ubuntu1 debianutils_4.8.6 dh-autoreconf_19 dh-strip-nondeterminism_0.044-1 diffutils_1:3.6-1 dmsetup_2:1.02.145-4.1ubuntu4 dpkg_1.19.0.5ubuntu5 dpkg-dev_1.19.0.5ubuntu5 dwz_0.12-2 e2fslibs_1.44.4-2 e2fsprogs_1.44.4-2 fakeroot_1.22-2ubuntu1 fdisk_2.32-0.1ubuntu2 file_1:5.34-2 findutils_4.6.0+git+20181018-1 g++_4:8.2.0-2ubuntu2 g++-8_8.2.0-9ubuntu1 gcc_4:8.2.0-2ubuntu2 gcc-8_8.2.0-9ubuntu1 gcc-8-base_8.2.0-9ubuntu1 gettext_0.19.8.1-8 gettext-base_0.19.8.1-8 gpg_2.2.8-3ubuntu1 gpg-agent_2.2.8-3ubuntu1 gpgconf_2.2.8-3ubuntu1 gpgv_2.2.8-3ubuntu1 grep_3.1-2ubuntu1 groff-base_1.22.3-10 gzip_1.6-5ubuntu2 hostname_3.21 init_1.55 init-system-helpers_1.55 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libapparmor1_2.12-4ubuntu10 libapt-pkg5.0_1.7.0 libarchive-zip-perl_1.64-1 libargon2-1_0~20171227-0.1 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pkg-config_0.29.1-0ubuntu2 pkgbinarymangler_143 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu1 rake_12.3.1-3 readline-common_7.0-5 ruby_1:2.5.1 ruby-asciidoctor_1.5.7.1-1 ruby-did-you-mean_1.2.1-1 ruby-minitest_5.11.3-1 ruby-net-telnet_0.1.1-2 ruby-power-assert_1.1.1-1 ruby-test-unit_3.2.8-1 ruby-xmlrpc_0.3.0-2 ruby2.5_2.5.1-6ubuntu2 rubygems-integration_1.11 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-snp-sites-dummy_0.invalid.0 sed_4.5-2 sensible-utils_0.0.12 systemd_239-7ubuntu10.1 systemd-sysv_239-7ubuntu10.1 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu2 tar_1.30+dfsg-2 tzdata_2018g-1 ubuntu-keyring_2018.09.18.1 util-linux_2.32-0.1ubuntu2 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 zlib1g-dev_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Sat Oct 6 15:56:28 2018 UTC gpgv: using RSA key 5B34BA5AAB5507E903426E85E8D37AE2F09F4872 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./snp-sites_2.4.1-1.dsc dpkg-source: info: extracting snp-sites in snp-sites-2.4.1 dpkg-source: info: unpacking snp-sites_2.4.1.orig.tar.gz dpkg-source: info: unpacking snp-sites_2.4.1-1.debian.tar.xz Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-15636728 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-15636728 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-15636728 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package snp-sites dpkg-buildpackage: info: source version 2.4.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build snp-sites-2.4.1 dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean --with autoreconf dh_clean debian/rules build-arch dh build-arch --with autoreconf dh_update_autotools_config -a dh_autoreconf -a libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:13: installing './compile' configure.ac:7: installing './config.guess' configure.ac:7: installing './config.sub' configure.ac:2: installing './install-sh' configure.ac:2: installing './missing' src/Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' dh_auto_configure -a ./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --libexecdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking build system type... arm-unknown-linux-gnueabihf checking host system type... arm-unknown-linux-gnueabihf checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for CHECK... yes checking whether make supports the include directive... yes (GNU style) checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking math.h usability... yes checking math.h presence... yes checking for math.h... yes checking getopt.h usability... yes checking getopt.h presence... yes checking for getopt.h... yes checking for floor in -lm... yes checking if zlib is wanted... yes checking for inflateEnd in -lz... yes checking for zlib.h... (cached) yes checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert arm-unknown-linux-gnueabihf file names to arm-unknown-linux-gnueabihf format... func_convert_file_noop checking how to convert arm-unknown-linux-gnueabihf file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking whether gcc understands -c and -o together... (cached) yes checking dependency style of gcc... (cached) none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode dh_auto_build -a make -j4 make[1]: Entering directory '/<>' make all-recursive make[2]: Entering directory '/<>' Making all in src make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include --std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snp_sites-main.o `test -f 'main.c' || echo './'`main.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o alignment-file.lo alignment-file.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o vcf.lo vcf.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o phylib-of-snp-sites.lo phylib-of-snp-sites.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c alignment-file.c -fPIC -DPIC -o .libs/alignment-file.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c vcf.c -fPIC -DPIC -o .libs/vcf.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c phylib-of-snp-sites.c -fPIC -DPIC -o .libs/phylib-of-snp-sites.o /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snp-sites.lo snp-sites.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c phylib-of-snp-sites.c -o phylib-of-snp-sites.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c snp-sites.c -fPIC -DPIC -o .libs/snp-sites.o /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fasta-of-snp-sites.lo fasta-of-snp-sites.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c vcf.c -o vcf.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c fasta-of-snp-sites.c -fPIC -DPIC -o .libs/fasta-of-snp-sites.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c snp-sites.c -o snp-sites.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c fasta-of-snp-sites.c -o fasta-of-snp-sites.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c alignment-file.c -o alignment-file.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 1:0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib -o libsnp-sites.la -rpath /usr/lib/arm-linux-gnueabihf alignment-file.lo vcf.lo phylib-of-snp-sites.lo snp-sites.lo fasta-of-snp-sites.lo -lz -lm libtool: link: gcc -shared -fPIC -DPIC .libs/alignment-file.o .libs/vcf.o .libs/phylib-of-snp-sites.o .libs/snp-sites.o .libs/fasta-of-snp-sites.o -L/usr/lib -lz -lm -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libsnp-sites.so.1 -o .libs/libsnp-sites.so.1.0.0 libtool: link: (cd ".libs" && rm -f "libsnp-sites.so.1" && ln -s "libsnp-sites.so.1.0.0" "libsnp-sites.so.1") libtool: link: (cd ".libs" && rm -f "libsnp-sites.so" && ln -s "libsnp-sites.so.1.0.0" "libsnp-sites.so") libtool: link: ar cru .libs/libsnp-sites.a alignment-file.o vcf.o phylib-of-snp-sites.o snp-sites.o fasta-of-snp-sites.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libsnp-sites.a libtool: link: ( cd ".libs" && rm -f "libsnp-sites.la" && ln -s "../libsnp-sites.la" "libsnp-sites.la" ) /bin/bash ../libtool --tag=CC --mode=link gcc --std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib -o snp-sites snp_sites-main.o libsnp-sites.la -lpthread -lz -lm libtool: link: gcc --std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/snp-sites snp_sites-main.o -L/usr/lib ./.libs/libsnp-sites.so -lpthread -lz -lm make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_auto_test -a make -j4 check VERBOSE=1 make[1]: Entering directory '/<>' Making check in src make[2]: Entering directory '/<>/src' make run-all-tests make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ../tests/run_all_tests-check-snp-sites.o `test -f '../tests/check-snp-sites.c' || echo './'`../tests/check-snp-sites.c gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ../tests/run_all_tests-check-vcf.o `test -f '../tests/check-vcf.c' || echo './'`../tests/check-vcf.c gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ../tests/run_all_tests-helper-methods.o `test -f '../tests/helper-methods.c' || echo './'`../tests/helper-methods.c gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ../tests/run_all_tests-run-all-tests.o `test -f '../tests/run-all-tests.c' || echo './'`../tests/run-all-tests.c /bin/bash ../libtool --tag=CC --mode=link gcc -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib -o run-all-tests ../tests/run_all_tests-check-snp-sites.o ../tests/run_all_tests-check-vcf.o ../tests/run_all_tests-helper-methods.o ../tests/run_all_tests-run-all-tests.o libsnp-sites.la -lpthread -lcheck_pic -pthread -lrt -lm -lsubunit -lz -lm libtool: link: gcc -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/run-all-tests ../tests/run_all_tests-check-snp-sites.o ../tests/run_all_tests-check-vcf.o ../tests/run_all_tests-helper-methods.o ../tests/run_all_tests-run-all-tests.o -pthread -L/usr/lib ./.libs/libsnp-sites.so -lpthread -lcheck_pic -lrt -lsubunit -lz -lm -pthread make[3]: Leaving directory '/<>/src' make check-TESTS make[3]: Entering directory '/<>/src' make[4]: Entering directory '/<>/src' PASS: run-all-tests ============================================================================ Testsuite summary for snp-sites 2.4.1 ============================================================================ # TOTAL: 1 # PASS: 1 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[4]: Leaving directory '/<>/src' make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --with autoreconf dh_testroot -a dh_prep -a dh_auto_install -a make -j1 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in src make[2]: Entering directory '/<>/src' make[3]: Entering directory '/<>/src' /bin/mkdir -p '/<>/debian/tmp/usr/lib/arm-linux-gnueabihf' /bin/bash ../libtool --mode=install /usr/bin/install -c libsnp-sites.la '/<>/debian/tmp/usr/lib/arm-linux-gnueabihf' libtool: install: /usr/bin/install -c .libs/libsnp-sites.so.1.0.0 /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libsnp-sites.so.1.0.0 libtool: install: (cd /<>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libsnp-sites.so.1.0.0 libsnp-sites.so.1 || { rm -f libsnp-sites.so.1 && ln -s libsnp-sites.so.1.0.0 libsnp-sites.so.1; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libsnp-sites.so.1.0.0 libsnp-sites.so || { rm -f libsnp-sites.so && ln -s libsnp-sites.so.1.0.0 libsnp-sites.so; }; }) libtool: install: /usr/bin/install -c .libs/libsnp-sites.lai /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libsnp-sites.la libtool: install: /usr/bin/install -c .libs/libsnp-sites.a /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libsnp-sites.a libtool: install: chmod 644 /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libsnp-sites.a libtool: install: ranlib /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libsnp-sites.a libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabihf' /bin/mkdir -p '/<>/debian/tmp/usr/bin' /bin/bash ../libtool --mode=install /usr/bin/install -c snp-sites '/<>/debian/tmp/usr/bin' libtool: warning: 'libsnp-sites.la' has not been installed in '/usr/lib/arm-linux-gnueabihf' libtool: install: /usr/bin/install -c .libs/snp-sites /<>/debian/tmp/usr/bin/snp-sites /bin/mkdir -p '/<>/debian/tmp/usr/include/snp-sites' /usr/bin/install -c -m 644 alignment-file.h vcf.h phylib-of-snp-sites.h snp-sites.h fasta-of-snp-sites.h kseq.h '/<>/debian/tmp/usr/include/snp-sites' make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install d-shlibmove --commit \ --multiarch \ --exclude-la \ --movedev "debian/tmp/usr/include/snp-sites/*.h" usr/include/snp-sites \ debian/tmp/usr/lib/*/libsnp-sites.so Library package automatic movement utility --> zlib1g-dev package exists. set -e install -d -m 755 debian/libsnp-sites1-dev/usr/lib/arm-linux-gnueabihf install -d -m 755 debian/libsnp-sites1/usr/lib/arm-linux-gnueabihf mv debian/tmp/usr/lib/arm-linux-gnueabihf/libsnp-sites.a debian/libsnp-sites1-dev/usr/lib/arm-linux-gnueabihf mv debian/tmp/usr/lib/arm-linux-gnueabihf/libsnp-sites.so debian/libsnp-sites1-dev/usr/lib/arm-linux-gnueabihf mv /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libsnp-sites.so.1 debian/libsnp-sites1/usr/lib/arm-linux-gnueabihf mv /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libsnp-sites.so.1.0.0 debian/libsnp-sites1/usr/lib/arm-linux-gnueabihf PKGDEV=libsnp-sites1-dev PKGSHL=libsnp-sites1 install -d -m 755 debian/libsnp-sites1-dev/usr/include/snp-sites mv debian/tmp/usr/include/snp-sites/*.h debian/libsnp-sites1-dev/usr/include/snp-sites make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a debian/rules override_dh_installman make[1]: Entering directory '/<>' mkdir -p /<>/debian/man asciidoctor -a docdate='' -b manpage /<>/snp-sites.txt mv /<>/snp-sites.1 /<>/debian/man dh_installman -- make[1]: Leaving directory '/<>' dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: Depends field of package libsnp-sites1-dev: unknown substitution variable ${shlibs:Depends} dpkg-gencontrol: warning: package libsnp-sites1-dev: unused substitution variable ${devlibs:Depends} dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 143 INFO: pkgstriptranslations version 143 INFO: pkgstriptranslations version 143 pkgstriptranslations: processing libsnp-sites1-dev (in debian/libsnp-sites1-dev); do_strip: , oemstrip: pkgstriptranslations: processing snp-sites (in debian/snp-sites); do_strip: , oemstrip: pkgstriptranslations: processing libsnp-sites1 (in debian/libsnp-sites1); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libsnp-sites1-dev/DEBIAN/control, package libsnp-sites1-dev, directory debian/libsnp-sites1-dev INFO: pkgstripfiles: waiting for lock (libsnp-sites1-dev) ... pkgstripfiles: processing control file: debian/libsnp-sites1/DEBIAN/control, package libsnp-sites1, directory debian/libsnp-sites1 INFO: pkgstripfiles: waiting for lock (libsnp-sites1) ... INFO: pkgstripfiles: waiting for lock (libsnp-sites1-dev) ... INFO: pkgstripfiles: waiting for lock (libsnp-sites1) ... INFO: pkgstripfiles: waiting for lock (libsnp-sites1-dev) ... INFO: pkgstripfiles: waiting for lock (libsnp-sites1) ... INFO: pkgstripfiles: waiting for lock (libsnp-sites1-dev) ... INFO: pkgstripfiles: waiting for lock (libsnp-sites1) ... INFO: pkgstripfiles: waiting for lock (libsnp-sites1-dev) ... INFO: pkgstripfiles: waiting for lock (libsnp-sites1) ... pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/snp-sites/DEBIAN/control, package snp-sites, directory debian/snp-sites Searching for duplicated docs in dependency libsnp-sites1... INFO: pkgstripfiles: waiting for lock (libsnp-sites1-dev) ... symlinking changelog.Debian.gz in snp-sites to file in libsnp-sites1 pkgstripfiles: Running PNG optimization (using 4 cpus) for package snp-sites ... pkgstripfiles: No PNG files. dpkg-deb: building package 'snp-sites' in '../snp-sites_2.4.1-1_armhf.deb'. pkgstripfiles: Truncating usr/share/doc/libsnp-sites1/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package libsnp-sites1 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libsnp-sites1' in '../libsnp-sites1_2.4.1-1_armhf.deb'. INFO: pkgstriptranslations version 143 INFO: pkgstriptranslations version 143 pkgstriptranslations: processing snp-sites-dbgsym (in debian/.debhelper/snp-sites/dbgsym-root); do_strip: , oemstrip: Searching for duplicated docs in dependency libsnp-sites1... symlinking changelog.Debian.gz in libsnp-sites1-dev to file in libsnp-sites1 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libsnp-sites1-dev ... pkgstriptranslations: processing libsnp-sites1-dbgsym (in debian/.debhelper/libsnp-sites1/dbgsym-root); do_strip: , oemstrip: pkgstripfiles: No PNG files. dpkg-deb: building package 'libsnp-sites1-dev' in '../libsnp-sites1-dev_2.4.1-1_armhf.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/snp-sites/dbgsym-root/DEBIAN/control, package snp-sites-dbgsym, directory debian/.debhelper/snp-sites/dbgsym-root dpkg-deb: building package 'snp-sites-dbgsym' in 'debian/.debhelper/scratch-space/build-snp-sites/snp-sites-dbgsym_2.4.1-1_armhf.deb'. pkgstripfiles: processing control file: debian/.debhelper/libsnp-sites1/dbgsym-root/DEBIAN/control, package libsnp-sites1-dbgsym, directory debian/.debhelper/libsnp-sites1/dbgsym-root Renaming snp-sites-dbgsym_2.4.1-1_armhf.deb to snp-sites-dbgsym_2.4.1-1_armhf.ddeb dpkg-deb: building package 'libsnp-sites1-dbgsym' in 'debian/.debhelper/scratch-space/build-libsnp-sites1/libsnp-sites1-dbgsym_2.4.1-1_armhf.deb'. Renaming libsnp-sites1-dbgsym_2.4.1-1_armhf.deb to libsnp-sites1-dbgsym_2.4.1-1_armhf.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../snp-sites_2.4.1-1_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build snp-sites-2.4.1 dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20181109-2159 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ snp-sites_2.4.1-1_armhf.changes: -------------------------------- Format: 1.8 Date: Sat, 06 Oct 2018 17:54:44 +0200 Source: snp-sites Binary: snp-sites libsnp-sites1 libsnp-sites1-dev Architecture: armhf Version: 2.4.1-1 Distribution: disco-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Sascha Steinbiss Description: libsnp-sites1 - Shared libraries of the package snp-sites libsnp-sites1-dev - Static libraries and header files for the package snp-sites snp-sites - Binary code for the package snp-sites Changes: snp-sites (2.4.1-1) unstable; urgency=medium . * New upstream release. Checksums-Sha1: afdfb19ced7eb263109cb08105a20d3f1ed45073 20624 libsnp-sites1-dbgsym_2.4.1-1_armhf.ddeb 880eaf228217b8f8903e64852d0c2b21879b8e54 12388 libsnp-sites1-dev_2.4.1-1_armhf.deb 13b9c8b63889795f2c11591d6d3e64fd9e0cf83c 9524 libsnp-sites1_2.4.1-1_armhf.deb 093cd536c8e1ccf827c3bce1fa207da528512467 6468 snp-sites-dbgsym_2.4.1-1_armhf.ddeb e545a2d699712e9e306f8f42684431b54e21b635 6665 snp-sites_2.4.1-1_armhf.buildinfo 1076d1b8ee9acbab6736a525a7a87e82121fa4dc 9912 snp-sites_2.4.1-1_armhf.deb Checksums-Sha256: 0f2f7076dd211ccf89655662956204fafc18290fdba5413b24c75e373e5d889e 20624 libsnp-sites1-dbgsym_2.4.1-1_armhf.ddeb 74d605494c47ee4451dc6a33887950ed8bc53dea8b3a51ce096468001154cefc 12388 libsnp-sites1-dev_2.4.1-1_armhf.deb 79f8bff49567a585c0348490342582e5adc448cef5e72f5208383febf6104c2b 9524 libsnp-sites1_2.4.1-1_armhf.deb 685499f16bcfb6924a62a9d0eda5a3bcab8fb61269d22e033a58d2ef76da678a 6468 snp-sites-dbgsym_2.4.1-1_armhf.ddeb 80dc78c2b6ccbfd0e6ccc24f85b44ecde2ccaae8561313581da4a493d889e199 6665 snp-sites_2.4.1-1_armhf.buildinfo d9eba184d6274006298732a0594cc324fa2843e2ae17c7229521501c9d31c416 9912 snp-sites_2.4.1-1_armhf.deb Files: 096f7819496008b435266cd80c0a777c 20624 debug optional libsnp-sites1-dbgsym_2.4.1-1_armhf.ddeb 5486b8a9b3315e6e581570bbfb473068 12388 libdevel optional libsnp-sites1-dev_2.4.1-1_armhf.deb b1e97ffab187fb40bafcb8c33877397e 9524 libs optional libsnp-sites1_2.4.1-1_armhf.deb 3444bee4c7879a666f66835e2399cbc9 6468 debug optional snp-sites-dbgsym_2.4.1-1_armhf.ddeb a4c2f8c86001067791c1b51bad4a3af9 6665 science optional snp-sites_2.4.1-1_armhf.buildinfo 874d54c12eaafd86fd5717b1aea8dd49 9912 science optional snp-sites_2.4.1-1_armhf.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libsnp-sites1-dev_2.4.1-1_armhf.deb ----------------------------------- new debian package, version 2.0. size 12388 bytes: control archive=1156 bytes. 1033 bytes, 25 lines control 654 bytes, 9 lines md5sums Package: libsnp-sites1-dev Source: snp-sites Version: 2.4.1-1 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 53 Depends: libsnp-sites1 (= 2.4.1-1) Conflicts: libsnp-sites-dev Provides: libsnp-sites-dev Section: libdevel Priority: optional Homepage: https://github.com/sanger-pathogens/snp-sites Description: Static libraries and header files for the package snp-sites Snp-sites finds single nucleotide polymorphism (SNP) sites from multi-fasta alignment input files (which might be compressed). Its output can be in various widely used formats (Multi Fasta Alignment, Vcf, phylip). . The software has been developed at the Wellcome Trust Sanger Institute. . This package contains the development files to include snp-sites into your own code. The library enables Python developers to make snp-sites function calls (Python bindings) through the Boost Python Library. drwxr-xr-x root/root 0 2018-10-06 15:54 ./ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/include/ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/include/snp-sites/ -rw-r--r-- root/root 1365 2018-10-06 15:54 ./usr/include/snp-sites/alignment-file.h -rw-r--r-- root/root 1145 2018-10-06 15:54 ./usr/include/snp-sites/fasta-of-snp-sites.h -rw-r--r-- root/root 8809 2018-10-06 15:54 ./usr/include/snp-sites/kseq.h -rw-r--r-- root/root 1149 2018-10-06 15:54 ./usr/include/snp-sites/phylib-of-snp-sites.h -rw-r--r-- root/root 2050 2018-10-06 15:54 ./usr/include/snp-sites/snp-sites.h -rw-r--r-- root/root 2005 2018-10-06 15:54 ./usr/include/snp-sites/vcf.h drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/lib/ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/lib/arm-linux-gnueabihf/ -rw-r--r-- root/root 17316 2018-10-06 15:54 ./usr/lib/arm-linux-gnueabihf/libsnp-sites.a lrwxrwxrwx root/root 0 2018-10-06 15:54 ./usr/lib/arm-linux-gnueabihf/libsnp-sites.so -> libsnp-sites.so.1.0.0 drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/share/ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/share/doc/libsnp-sites1-dev/ -rw-r--r-- root/root 504 2018-10-06 15:54 ./usr/share/doc/libsnp-sites1-dev/README.Debian lrwxrwxrwx root/root 0 2018-10-06 15:54 ./usr/share/doc/libsnp-sites1-dev/changelog.Debian.gz -> ../libsnp-sites1/changelog.Debian.gz -rw-r--r-- root/root 2334 2018-10-06 15:54 ./usr/share/doc/libsnp-sites1-dev/copyright libsnp-sites1_2.4.1-1_armhf.deb ------------------------------- new debian package, version 2.0. size 9524 bytes: control archive=988 bytes. 811 bytes, 20 lines control 238 bytes, 3 lines md5sums 29 bytes, 1 lines shlibs 74 bytes, 2 lines triggers Package: libsnp-sites1 Source: snp-sites Version: 2.4.1-1 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 29 Depends: libc6 (>= 2.4), zlib1g (>= 1:1.1.4) Section: libs Priority: optional Homepage: https://github.com/sanger-pathogens/snp-sites Description: Shared libraries of the package snp-sites Snp-sites finds single nucleotide polymorphism (SNP) sites from multi-fasta alignment input files (which might be compressed). Its output can be in various widely used formats (Multi Fasta Alignment, Vcf, phylip). . The software has been developed at the Wellcome Trust Sanger Institute. . This package contains the dynamic library uses by snp-sites. drwxr-xr-x root/root 0 2018-10-06 15:54 ./ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/lib/ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/lib/arm-linux-gnueabihf/ lrwxrwxrwx root/root 0 2018-10-06 15:54 ./usr/lib/arm-linux-gnueabihf/libsnp-sites.so.1 -> libsnp-sites.so.1.0.0 -rw-r--r-- root/root 13576 2018-10-06 15:54 ./usr/lib/arm-linux-gnueabihf/libsnp-sites.so.1.0.0 drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/share/ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/share/doc/libsnp-sites1/ -rw-r--r-- root/root 696 2018-10-06 15:54 ./usr/share/doc/libsnp-sites1/changelog.Debian.gz -rw-r--r-- root/root 2334 2018-10-06 15:54 ./usr/share/doc/libsnp-sites1/copyright snp-sites_2.4.1-1_armhf.deb --------------------------- new debian package, version 2.0. size 9912 bytes: control archive=1148 bytes. 1217 bytes, 25 lines control 331 bytes, 5 lines md5sums Package: snp-sites Version: 2.4.1-1 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 33 Depends: libc6 (>= 2.4), libsnp-sites1 Section: science Priority: optional Homepage: https://github.com/sanger-pathogens/snp-sites Description: Binary code for the package snp-sites This program finds single nucleotide polymorphism (SNP) sites from multi-fasta alignment input files (which might be compressed). Its output can be in various widely used formats (Multi Fasta Alignment, Vcf, phylip). . The software has been developed at the Wellcome Trust Sanger Institute. . A Single Nucleotide - polymorphism (SNP, pronounced snip; plural snips) is a DNA sequence variation occurring when a Single Nucleotide — A, T, C or G — in the genome (or other shared sequence) differs between members of a biological species or paired chromosomes. For example, two sequenced DNA fragments from different individuals, AAGCCTA to AAGCTTA, contain a difference in a single nucleotide. In this case there are two alleles. Almost all common SNPs have only two alleles. drwxr-xr-x root/root 0 2018-10-06 15:54 ./ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/bin/ -rwxr-xr-x root/root 13732 2018-10-06 15:54 ./usr/bin/snp-sites drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/share/ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/share/doc/snp-sites/ -rw-r--r-- root/root 378 2018-10-06 15:54 ./usr/share/doc/snp-sites/README.Debian -rw-r--r-- root/root 2572 2018-10-04 10:37 ./usr/share/doc/snp-sites/README.md.gz lrwxrwxrwx root/root 0 2018-10-06 15:54 ./usr/share/doc/snp-sites/changelog.Debian.gz -> ../libsnp-sites1/changelog.Debian.gz -rw-r--r-- root/root 2334 2018-10-06 15:54 ./usr/share/doc/snp-sites/copyright drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/share/man/ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/share/man/man1/ -rw-r--r-- root/root 1396 2018-10-06 15:54 ./usr/share/man/man1/snp-sites.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build-Space: 21632 Build-Time: 45 Distribution: disco-proposed Host Architecture: armhf Install-Time: 19 Job: snp-sites_2.4.1-1.dsc Machine Architecture: arm64 Package: snp-sites Package-Time: 66 Source-Version: 2.4.1-1 Space: 21632 Status: successful Version: 2.4.1-1 -------------------------------------------------------------------------------- Finished at 20181109-2159 Build needed 00:01:06, 21632k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=disco --arch=armhf PACKAGEBUILD-15636728 Scanning for processes to kill in build PACKAGEBUILD-15636728