https://launchpad.net/ubuntu/+source/snp-sites/2.4.1-1/+build/15636727 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux bos02-arm64-017 4.4.0-138-generic #164-Ubuntu SMP Tue Oct 2 17:15:48 UTC 2018 aarch64 Buildd toolchain package versions: launchpad-buildd_165 python-lpbuildd_165 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.5 dpkg-dev_1.18.4ubuntu1.5 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 9 Nov 21:57:49 ntpdate[1824]: adjust time server 10.211.37.1 offset -0.073570 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=disco --arch=arm64 PACKAGEBUILD-15636727 /home/buildd/filecache-default/bf137a8dadabbe066906202a7cb9d7a8e3a99968 Creating target for build PACKAGEBUILD-15636727 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=disco --arch=arm64 PACKAGEBUILD-15636727 Starting target for build PACKAGEBUILD-15636727 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=disco --arch=arm64 PACKAGEBUILD-15636727 'deb http://ftpmaster.internal/ubuntu disco main universe' 'deb http://ftpmaster.internal/ubuntu disco-security main universe' 'deb http://ftpmaster.internal/ubuntu disco-updates main universe' 'deb http://ftpmaster.internal/ubuntu disco-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-15636727 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=disco --arch=arm64 PACKAGEBUILD-15636727 Updating target for build PACKAGEBUILD-15636727 Get:1 http://ftpmaster.internal/ubuntu disco InRelease [243 kB] Get:2 http://ftpmaster.internal/ubuntu disco-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu disco-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu disco-proposed InRelease [93.2 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main arm64 Packages [976 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main Translation-en [513 kB] Get:7 http://ftpmaster.internal/ubuntu disco/universe arm64 Packages [8495 kB] Get:8 http://ftpmaster.internal/ubuntu disco/universe Translation-en [5037 kB] Get:9 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 Packages [113 kB] Get:10 http://ftpmaster.internal/ubuntu disco-proposed/main Translation-en [66.5 kB] Get:11 http://ftpmaster.internal/ubuntu disco-proposed/universe arm64 Packages [517 kB] Get:12 http://ftpmaster.internal/ubuntu disco-proposed/universe Translation-en [466 kB] Fetched 16.7 MB in 6s (2959 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libgdbm5 libperl5.26 perl-modules-5.26 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libgdbm6 libperl5.28 perl-modules-5.28 The following packages will be upgraded: base-files binutils binutils-aarch64-linux-gnu binutils-common cpp cpp-8 dash dmsetup findutils g++ g++-8 gcc gcc-8 gcc-8-base hostname init init-system-helpers libapparmor1 libasan5 libatomic1 libaudit-common libaudit1 libbinutils libcap-ng0 libcc1-0 libdb5.3 libdevmapper1.02.1 libgcc-8-dev libgcc1 libgdbm-compat4 libgomp1 libgpg-error0 libitm1 libkmod2 liblsan0 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsqlite3-0 libstdc++-8-dev libstdc++6 libsystemd0 libtsan0 libubsan1 libudev1 linux-libc-dev lockfile-progs perl perl-base sed systemd systemd-sysv tzdata 54 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 40.0 MB of archives. After this operation, 48.4 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu disco/main arm64 base-files arm64 10.1ubuntu8 [60.1 kB] Get:2 http://ftpmaster.internal/ubuntu disco/main arm64 dash arm64 0.5.10.2-1 [88.0 kB] Get:3 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 findutils arm64 4.6.0+git+20181018-1 [290 kB] Get:4 http://ftpmaster.internal/ubuntu disco/main arm64 hostname arm64 3.21 [10.9 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main arm64 perl-modules-5.28 all 5.28.0-3 [2818 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main arm64 libgdbm6 arm64 1.18.1-1 [26.8 kB] Get:7 http://ftpmaster.internal/ubuntu disco/main arm64 libgdbm-compat4 arm64 1.18.1-1 [6016 B] Get:8 http://ftpmaster.internal/ubuntu disco/main arm64 libperl5.28 arm64 5.28.0-3 [3667 kB] Get:9 http://ftpmaster.internal/ubuntu disco/main arm64 perl arm64 5.28.0-3 [204 kB] Get:10 http://ftpmaster.internal/ubuntu disco/main arm64 perl-base arm64 5.28.0-3 [1398 kB] Get:11 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libdb5.3 arm64 5.3.28+dfsg1-0.2 [616 kB] Get:12 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 sed arm64 4.5-2 [182 kB] Get:13 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 init-system-helpers all 1.55 [38.5 kB] Get:14 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 systemd-sysv arm64 239-7ubuntu10.1 [9404 B] Get:15 http://ftpmaster.internal/ubuntu disco/main arm64 libapparmor1 arm64 2.12-4ubuntu10 [29.1 kB] Get:16 http://ftpmaster.internal/ubuntu disco/main arm64 libaudit-common all 1:2.8.3-1ubuntu3 [4068 B] Get:17 http://ftpmaster.internal/ubuntu disco/main arm64 libcap-ng0 arm64 0.7.9-1build1 [10.5 kB] Get:18 http://ftpmaster.internal/ubuntu disco/main arm64 libaudit1 arm64 1:2.8.3-1ubuntu3 [38.1 kB] Get:19 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libgpg-error0 arm64 1.32-3 [53.4 kB] Get:20 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libkmod2 arm64 25-1ubuntu1.1 [38.7 kB] Get:21 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 systemd arm64 239-7ubuntu10.1 [2757 kB] Get:22 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libsystemd0 arm64 239-7ubuntu10.1 [195 kB] Get:23 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 init arm64 1.55 [6476 B] Get:24 http://ftpmaster.internal/ubuntu disco/main arm64 libcc1-0 arm64 8.2.0-9ubuntu1 [36.3 kB] Get:25 http://ftpmaster.internal/ubuntu disco/main arm64 libgomp1 arm64 8.2.0-9ubuntu1 [69.6 kB] Get:26 http://ftpmaster.internal/ubuntu disco/main arm64 libitm1 arm64 8.2.0-9ubuntu1 [24.4 kB] Get:27 http://ftpmaster.internal/ubuntu disco/main arm64 libatomic1 arm64 8.2.0-9ubuntu1 [9124 B] Get:28 http://ftpmaster.internal/ubuntu disco/main arm64 libasan5 arm64 8.2.0-9ubuntu1 [336 kB] Get:29 http://ftpmaster.internal/ubuntu disco/main arm64 liblsan0 arm64 8.2.0-9ubuntu1 [121 kB] Get:30 http://ftpmaster.internal/ubuntu disco/main arm64 libtsan0 arm64 8.2.0-9ubuntu1 [269 kB] Get:31 http://ftpmaster.internal/ubuntu disco/main arm64 libubsan1 arm64 8.2.0-9ubuntu1 [113 kB] Get:32 http://ftpmaster.internal/ubuntu disco/main arm64 gcc-8-base arm64 8.2.0-9ubuntu1 [18.6 kB] Get:33 http://ftpmaster.internal/ubuntu disco/main arm64 libstdc++6 arm64 8.2.0-9ubuntu1 [372 kB] Get:34 http://ftpmaster.internal/ubuntu disco/main arm64 g++-8 arm64 8.2.0-9ubuntu1 [6548 kB] Get:35 http://ftpmaster.internal/ubuntu disco/main arm64 libstdc++-8-dev arm64 8.2.0-9ubuntu1 [1513 kB] Get:36 http://ftpmaster.internal/ubuntu disco/main arm64 libgcc-8-dev arm64 8.2.0-9ubuntu1 [857 kB] Get:37 http://ftpmaster.internal/ubuntu disco/main arm64 gcc-8 arm64 8.2.0-9ubuntu1 [6470 kB] Get:38 http://ftpmaster.internal/ubuntu disco/main arm64 cpp-8 arm64 8.2.0-9ubuntu1 [5713 kB] Get:39 http://ftpmaster.internal/ubuntu disco/main arm64 libgcc1 arm64 1:8.2.0-9ubuntu1 [34.3 kB] Get:40 http://ftpmaster.internal/ubuntu disco/main arm64 libbinutils arm64 2.31.1-7ubuntu1 [462 kB] Get:41 http://ftpmaster.internal/ubuntu disco/main arm64 binutils-common arm64 2.31.1-7ubuntu1 [194 kB] Get:42 http://ftpmaster.internal/ubuntu disco/main arm64 binutils arm64 2.31.1-7ubuntu1 [3364 B] Get:43 http://ftpmaster.internal/ubuntu disco/main arm64 binutils-aarch64-linux-gnu arm64 2.31.1-7ubuntu1 [2173 kB] Get:44 http://ftpmaster.internal/ubuntu disco/main arm64 libselinux1 arm64 2.8-1build2 [64.9 kB] Get:45 http://ftpmaster.internal/ubuntu disco/main arm64 libsemanage-common all 2.8-1build2 [6892 B] Get:46 http://ftpmaster.internal/ubuntu disco/main arm64 libsemanage1 arm64 2.8-1build2 [79.7 kB] Get:47 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libudev1 arm64 239-7ubuntu10.1 [50.1 kB] Get:48 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libseccomp2 arm64 2.3.3-3ubuntu2 [38.6 kB] Get:49 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libdevmapper1.02.1 arm64 2:1.02.145-4.1ubuntu4 [109 kB] Get:50 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 dmsetup arm64 2:1.02.145-4.1ubuntu4 [67.6 kB] Get:51 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libsqlite3-0 arm64 3.25.3-1 [490 kB] Get:52 http://ftpmaster.internal/ubuntu disco/main arm64 tzdata all 2018g-1 [188 kB] Get:53 http://ftpmaster.internal/ubuntu disco/main arm64 g++ arm64 4:8.2.0-2ubuntu2 [1592 B] Get:54 http://ftpmaster.internal/ubuntu disco/main arm64 gcc arm64 4:8.2.0-2ubuntu2 [5232 B] Get:55 http://ftpmaster.internal/ubuntu disco/main arm64 cpp arm64 4:8.2.0-2ubuntu2 [27.6 kB] Get:56 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 linux-libc-dev arm64 4.18.0-11.12 [1019 kB] Get:57 http://ftpmaster.internal/ubuntu disco/main arm64 lockfile-progs arm64 0.1.18 [9748 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 40.0 MB in 1s (28.8 MB/s) (Reading database ... 12627 files and directories currently installed.) Preparing to unpack .../base-files_10.1ubuntu8_arm64.deb ... Unpacking base-files (10.1ubuntu8) over (10.1ubuntu7) ... Setting up base-files (10.1ubuntu8) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... 12627 files and directories currently installed.) Preparing to unpack .../dash_0.5.10.2-1_arm64.deb ... Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' Unpacking dash (0.5.10.2-1) over (0.5.8-2.10) ... Setting up dash (0.5.10.2-1) ... Removing 'diversion of /bin/sh to /bin/sh.distrib by bash' Adding 'diversion of /bin/sh to /bin/sh.distrib by dash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' (Reading database ... 12627 files and directories currently installed.) Preparing to unpack .../findutils_4.6.0+git+20181018-1_arm64.deb ... Unpacking findutils (4.6.0+git+20181018-1) over (4.6.0+git+20180808-2) ... Setting up findutils (4.6.0+git+20181018-1) ... (Reading database ... 12627 files and directories currently installed.) Preparing to unpack .../hostname_3.21_arm64.deb ... Unpacking hostname (3.21) over (3.20) ... Setting up hostname (3.21) ... (Reading database ... 12627 files and directories currently installed.) Preparing to unpack .../0-perl_5.28.0-3_arm64.deb ... Unpacking perl (5.28.0-3) over (5.26.2-7) ... 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Processing triggers for libc-bin (2.28-0ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-15636727 arm64 disco-proposed -c chroot:build-PACKAGEBUILD-15636727 --arch=arm64 --dist=disco-proposed --nolog snp-sites_2.4.1-1.dsc Initiating build PACKAGEBUILD-15636727 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-138-generic #164-Ubuntu SMP Tue Oct 2 17:15:48 UTC 2018 aarch64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-arm64-017.buildd +==============================================================================+ | snp-sites 2.4.1-1 (arm64) 09 Nov 2018 21:58 | +==============================================================================+ Package: snp-sites Version: 2.4.1-1 Source Version: 2.4.1-1 Distribution: disco-proposed Machine Architecture: arm64 Host Architecture: arm64 Build Architecture: arm64 I: NOTICE: Log filtering will replace 'build/snp-sites-eDgnSf/snp-sites-2.4.1' with '<>' I: NOTICE: Log filtering will replace 'build/snp-sites-eDgnSf' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-15636727/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- snp-sites_2.4.1-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-BulxrF/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-BulxrF/apt_archive ./ InRelease Get:2 copy:/<>/resolver-BulxrF/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-BulxrF/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-BulxrF/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-BulxrF/apt_archive ./ Packages [527 B] Fetched 2860 B in 0s (147 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libgdbm5 libperl5.26 perl-modules-5.26 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-BulxrF/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14518 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11), zlib1g-dev, check, pkg-config, d-shlibs, asciidoctor Filtered Build-Depends: debhelper (>= 11), zlib1g-dev, check, pkg-config, d-shlibs, asciidoctor dpkg-deb: building package 'sbuild-build-depends-snp-sites-dummy' in '/<>/resolver-HY9t25/apt_archive/sbuild-build-depends-snp-sites-dummy.deb'. Ign:1 copy:/<>/resolver-HY9t25/apt_archive ./ InRelease Get:2 copy:/<>/resolver-HY9t25/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-HY9t25/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-HY9t25/apt_archive ./ Sources [246 B] Get:5 copy:/<>/resolver-HY9t25/apt_archive ./ Packages [565 B] Fetched 2930 B in 0s (146 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install snp-sites build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libgdbm5 libperl5.26 perl-modules-5.26 Use 'apt autoremove' to remove them. The following additional packages will be installed: asciidoctor autoconf automake autopoint autotools-dev bsdmainutils check d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libicu60 libmagic-mgc libmagic1 libpipeline1 libruby2.5 libsigsegv2 libsubunit-dev libsubunit0 libtool libxml2 libyaml-0-2 m4 man-db pkg-config po-debconf rake ruby ruby-asciidoctor ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert ruby-test-unit ruby-xmlrpc ruby2.5 rubygems-integration zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl ri ruby-dev bundler Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl zip fonts-lato libjs-jquery The following NEW packages will be installed: asciidoctor autoconf automake autopoint autotools-dev bsdmainutils check d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libicu60 libmagic-mgc libmagic1 libpipeline1 libruby2.5 libsigsegv2 libsubunit-dev libsubunit0 libtool libxml2 libyaml-0-2 m4 man-db pkg-config po-debconf rake ruby ruby-asciidoctor ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert ruby-test-unit ruby-xmlrpc ruby2.5 rubygems-integration sbuild-build-depends-snp-sites-dummy zlib1g-dev 0 upgraded, 51 newly installed, 0 to remove and 0 not upgraded. Need to get 20.2 MB of archives. After this operation, 80.7 MB of additional disk space will be used. Get:1 copy:/<>/resolver-HY9t25/apt_archive ./ sbuild-build-depends-snp-sites-dummy 0.invalid.0 [896 B] Get:2 http://ftpmaster.internal/ubuntu disco/main arm64 libbsd0 arm64 0.9.1-1 [39.4 kB] Get:3 http://ftpmaster.internal/ubuntu disco/main arm64 bsdmainutils arm64 11.1.2ubuntu2 [175 kB] Get:4 http://ftpmaster.internal/ubuntu disco/main arm64 groff-base arm64 1.22.3-10 [1152 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main arm64 libpipeline1 arm64 1.5.0-2 [24.2 kB] Get:6 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 man-db arm64 2.8.4-3 [1017 kB] Get:7 http://ftpmaster.internal/ubuntu disco/main arm64 libmagic-mgc arm64 1:5.34-2 [197 kB] Get:8 http://ftpmaster.internal/ubuntu disco/main arm64 libmagic1 arm64 1:5.34-2 [69.5 kB] Get:9 http://ftpmaster.internal/ubuntu disco/main arm64 file arm64 1:5.34-2 [22.9 kB] Get:10 http://ftpmaster.internal/ubuntu disco/main arm64 libelf1 arm64 0.170-0.5.0ubuntu1 [43.4 kB] Get:11 http://ftpmaster.internal/ubuntu disco/main arm64 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http://ftpmaster.internal/ubuntu disco/main arm64 ruby-test-unit all 3.2.8-1 [61.4 kB] Get:23 http://ftpmaster.internal/ubuntu disco/main arm64 ruby-xmlrpc all 0.3.0-2 [23.8 kB] Get:24 http://ftpmaster.internal/ubuntu disco/main arm64 libruby2.5 arm64 2.5.1-6ubuntu2 [2952 kB] Get:25 http://ftpmaster.internal/ubuntu disco/main arm64 ruby2.5 arm64 2.5.1-6ubuntu2 [48.7 kB] Get:26 http://ftpmaster.internal/ubuntu disco/main arm64 ruby arm64 1:2.5.1 [5712 B] Get:27 http://ftpmaster.internal/ubuntu disco/universe arm64 ruby-asciidoctor all 1.5.7.1-1 [157 kB] Get:28 http://ftpmaster.internal/ubuntu disco/universe arm64 asciidoctor arm64 1.5.7.1-1 [37.4 kB] Get:29 http://ftpmaster.internal/ubuntu disco/main arm64 libsigsegv2 arm64 2.12-2 [13.3 kB] Get:30 http://ftpmaster.internal/ubuntu disco/main arm64 m4 arm64 1.4.18-1ubuntu1 [194 kB] Get:31 http://ftpmaster.internal/ubuntu disco/main arm64 autoconf all 2.69-11 [322 kB] Get:32 http://ftpmaster.internal/ubuntu disco/main arm64 autotools-dev all 20180224.1 [39.6 kB] Get:33 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 automake all 1:1.16.1-4 [522 kB] Get:34 http://ftpmaster.internal/ubuntu disco/main arm64 autopoint all 0.19.8.1-8 [412 kB] Get:35 http://ftpmaster.internal/ubuntu disco/main arm64 libsubunit0 arm64 1.3.0-1 [6928 B] Get:36 http://ftpmaster.internal/ubuntu disco/main arm64 libsubunit-dev arm64 1.3.0-1 [5912 B] Get:37 http://ftpmaster.internal/ubuntu disco/universe arm64 check arm64 0.10.0-3build2 [163 kB] Get:38 http://ftpmaster.internal/ubuntu disco/universe arm64 d-shlibs all 0.82+nmu1 [10.2 kB] Get:39 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libtool all 2.4.6-6 [195 kB] Get:40 http://ftpmaster.internal/ubuntu disco/main arm64 dh-autoreconf all 19 [16.1 kB] Get:41 http://ftpmaster.internal/ubuntu disco/main arm64 libarchive-zip-perl all 1.64-1 [84.9 kB] Get:42 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libfile-stripnondeterminism-perl all 0.044-1 [15.0 kB] Get:43 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 dh-strip-nondeterminism all 0.044-1 [5124 B] Get:44 http://ftpmaster.internal/ubuntu disco/main arm64 dwz arm64 0.12-2 [68.1 kB] Get:45 http://ftpmaster.internal/ubuntu disco/main arm64 libcroco3 arm64 0.6.12-2 [68.2 kB] Get:46 http://ftpmaster.internal/ubuntu disco/main arm64 gettext arm64 0.19.8.1-8 [853 kB] Get:47 http://ftpmaster.internal/ubuntu disco/main arm64 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:48 http://ftpmaster.internal/ubuntu disco/main arm64 po-debconf all 1.0.20 [232 kB] Get:49 http://ftpmaster.internal/ubuntu disco/main arm64 debhelper all 11.3.2ubuntu1 [883 kB] Get:50 http://ftpmaster.internal/ubuntu disco/main arm64 pkg-config arm64 0.29.1-0ubuntu2 [42.8 kB] Get:51 http://ftpmaster.internal/ubuntu disco/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-0ubuntu2 [171 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 20.2 MB in 1s (29.6 MB/s) Selecting previously 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(Reading database ... 14518 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-1_arm64.deb ... Unpacking libbsd0:arm64 (0.9.1-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2ubuntu2_arm64.deb ... Unpacking bsdmainutils (11.1.2ubuntu2) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.3-10_arm64.deb ... Unpacking groff-base (1.22.3-10) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../03-libpipeline1_1.5.0-2_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.0-2) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.8.4-3_arm64.deb ... Unpacking man-db (2.8.4-3) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../05-libmagic-mgc_1%3a5.34-2_arm64.deb ... Unpacking libmagic-mgc (1:5.34-2) ... Selecting previously unselected package libmagic1:arm64. 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Preparing to unpack .../49-zlib1g-dev_1%3a1.2.11.dfsg-0ubuntu2_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.2.11.dfsg-0ubuntu2) ... Selecting previously unselected package sbuild-build-depends-snp-sites-dummy. Preparing to unpack .../50-sbuild-build-depends-snp-sites-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-snp-sites-dummy (0.invalid.0) ... Setting up libicu60:arm64 (60.2-6ubuntu1) ... Setting up ruby-xmlrpc (0.3.0-2) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libsigsegv2:arm64 (2.12-2) ... Setting up libelf1:arm64 (0.170-0.5.0ubuntu1) ... Setting up groff-base (1.22.3-10) ... Setting up libglib2.0-0:arm64 (2.58.1-2) ... No schema files found: doing nothing. Setting up libsubunit0:arm64 (1.3.0-1) ... Setting up d-shlibs (0.82+nmu1) ... Setting up gettext-base (0.19.8.1-8) ... Setting up libpipeline1:arm64 (1.5.0-2) ... Setting up m4 (1.4.18-1ubuntu1) ... Setting up libbsd0:arm64 (0.9.1-1) ... Setting up libxml2:arm64 (2.9.4+dfsg1-7ubuntu2) ... Setting up libmagic-mgc (1:5.34-2) ... Setting up libmagic1:arm64 (1:5.34-2) ... Setting up libcroco3:arm64 (0.6.12-2) ... Setting up libsubunit-dev:arm64 (1.3.0-1) ... Setting up pkg-config (0.29.1-0ubuntu2) ... Setting up ruby-did-you-mean (1.2.1-1) ... Setting up libyaml-0-2:arm64 (0.2.1-1) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... Setting up dwz (0.12-2) ... Setting up autotools-dev (20180224.1) ... Setting up ruby-net-telnet (0.1.1-2) ... Setting up check:arm64 (0.10.0-3build2) ... Setting up rubygems-integration (1.11) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up ruby-minitest (5.11.3-1) ... Setting up autopoint (0.19.8.1-8) ... Setting up ruby-power-assert (1.1.1-1) ... Setting up zlib1g-dev:arm64 (1:1.2.11.dfsg-0ubuntu2) ... Setting up libfile-stripnondeterminism-perl (0.044-1) ... Setting up ruby-test-unit (3.2.8-1) ... Setting up gettext (0.19.8.1-8) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.34-2) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.8.4-3) ... Not building database; man-db/auto-update is not 'true'. Setting up libtool (2.4.6-6) ... Setting up po-debconf (1.0.20) ... Setting up libruby2.5:arm64 (2.5.1-6ubuntu2) ... Setting up dh-autoreconf (19) ... Setting up debhelper (11.3.2ubuntu1) ... Setting up ruby2.5 (2.5.1-6ubuntu2) ... Setting up dh-strip-nondeterminism (0.044-1) ... Setting up ruby (1:2.5.1) ... Setting up rake (12.3.1-3) ... Setting up ruby-asciidoctor (1.5.7.1-1) ... Setting up asciidoctor (1.5.7.1-1) ... Setting up sbuild-build-depends-snp-sites-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-138-generic arm64 (aarch64) Toolchain package versions: binutils_2.31.1-7ubuntu1 dpkg-dev_1.19.0.5ubuntu5 g++-8_8.2.0-9ubuntu1 gcc-8_8.2.0-9ubuntu1 libc6-dev_2.28-0ubuntu1 libstdc++-8-dev_8.2.0-9ubuntu1 libstdc++6_8.2.0-9ubuntu1 linux-libc-dev_4.18.0-11.12 Package versions: adduser_3.117ubuntu1 advancecomp_2.1-1 apt_1.7.0 asciidoctor_1.5.7.1-1 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-8 autotools-dev_20180224.1 base-files_10.1ubuntu8 base-passwd_3.5.45 bash_4.4.18-2ubuntu3 binutils_2.31.1-7ubuntu1 binutils-aarch64-linux-gnu_2.31.1-7ubuntu1 binutils-common_2.31.1-7ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.32-0.1ubuntu2 build-essential_12.5ubuntu2 bzip2_1.0.6-9 ca-certificates_20180409 check_0.10.0-3build2 coreutils_8.28-1ubuntu2 cpp_4:8.2.0-2ubuntu2 cpp-8_8.2.0-9ubuntu1 d-shlibs_0.82+nmu1 dash_0.5.10.2-1 debconf_1.5.69 debhelper_11.3.2ubuntu1 debianutils_4.8.6 dh-autoreconf_19 dh-strip-nondeterminism_0.044-1 diffutils_1:3.6-1 dmsetup_2:1.02.145-4.1ubuntu4 dpkg_1.19.0.5ubuntu5 dpkg-dev_1.19.0.5ubuntu5 dwz_0.12-2 e2fslibs_1.44.4-2 e2fsprogs_1.44.4-2 fakeroot_1.22-2ubuntu1 fdisk_2.32-0.1ubuntu2 file_1:5.34-2 findutils_4.6.0+git+20181018-1 g++_4:8.2.0-2ubuntu2 g++-8_8.2.0-9ubuntu1 gcc_4:8.2.0-2ubuntu2 gcc-8_8.2.0-9ubuntu1 gcc-8-base_8.2.0-9ubuntu1 gettext_0.19.8.1-8 gettext-base_0.19.8.1-8 gpg_2.2.8-3ubuntu1 gpg-agent_2.2.8-3ubuntu1 gpgconf_2.2.8-3ubuntu1 gpgv_2.2.8-3ubuntu1 grep_3.1-2ubuntu1 groff-base_1.22.3-10 gzip_1.6-5ubuntu2 hostname_3.21 init_1.55 init-system-helpers_1.55 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libapparmor1_2.12-4ubuntu10 libapt-pkg5.0_1.7.0 libarchive-zip-perl_1.64-1 libargon2-1_0~20171227-0.1 libasan5_8.2.0-9ubuntu1 libassuan0_2.5.1-2 libatomic1_8.2.0-9ubuntu1 libattr1_1:2.4.47-2build1 libaudit-common_1:2.8.3-1ubuntu3 libaudit1_1:2.8.3-1ubuntu3 libbinutils_2.31.1-7ubuntu1 libblkid1_2.32-0.1ubuntu2 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-9 libc-bin_2.28-0ubuntu1 libc-dev-bin_2.28-0ubuntu1 libc6_2.28-0ubuntu1 libc6-dev_2.28-0ubuntu1 libcap-ng0_0.7.9-1build1 libcap2_1:2.25-1.2 libcc1-0_8.2.0-9ubuntu1 libcom-err2_1.44.4-2 libcomerr2_1.44.4-2 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.4-2ubuntu2 libdb5.3_5.3.28+dfsg1-0.2 libdebconfclient0_0.244ubuntu1 libdevmapper1.02.1_2:1.02.145-4.1ubuntu4 libdpkg-perl_1.19.0.5ubuntu5 libelf1_0.170-0.5.0ubuntu1 libext2fs2_1.44.4-2 libfakeroot_1.22-2ubuntu1 libfdisk1_2.32-0.1ubuntu2 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.044-1 libgcc-8-dev_8.2.0-9ubuntu1 libgcc1_1:8.2.0-9ubuntu1 libgcrypt20_1.8.3-1ubuntu1 libgdbm-compat4_1.18.1-1 libgdbm5_1.14.1-6 libgdbm6_1.18.1-1 libglib2.0-0_2.58.1-2 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.6.4-2ubuntu1 libgomp1_8.2.0-9ubuntu1 libgpg-error0_1.32-3 libhogweed4_3.4-1 libicu60_60.2-6ubuntu1 libidn11_1.33-2.2ubuntu1 libidn2-0_2.0.5-1 libip4tc0_1.6.1-2ubuntu2 libisl19_0.20-2 libitm1_8.2.0-9ubuntu1 libjson-c3_0.12.1-1.3 libkmod2_25-1ubuntu1.1 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 liblsan0_8.2.0-9ubuntu1 liblz4-1_1.8.2-1ubuntu1 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.34-2 libmagic1_1:5.34-2 libmount1_2.32-0.1ubuntu2 libmpc3_1.1.0-1 libmpfr6_4.0.1-1 libncurses6_6.1+20180210-4ubuntu1 libncursesw6_6.1+20180210-4ubuntu1 libnettle6_3.4-1 libnpth0_1.6-1 libp11-kit0_0.23.14-2 libpam-modules_1.1.8-3.6ubuntu2 libpam-modules-bin_1.1.8-3.6ubuntu2 libpam-runtime_1.1.8-3.6ubuntu2 libpam0g_1.1.8-3.6ubuntu2 libpcre3_2:8.39-11 libperl5.26_5.26.2-7 libperl5.28_5.28.0-3 libpipeline1_1.5.0-2 libpng16-16_1.6.34-2 libprocps7_2:3.3.15-2ubuntu1 libreadline7_7.0-5 libruby2.5_2.5.1-6ubuntu2 libseccomp2_2.3.3-3ubuntu2 libselinux1_2.8-1build2 libsemanage-common_2.8-1build2 libsemanage1_2.8-1build2 libsepol1_2.8-1 libsigsegv2_2.12-2 libslang2_2.3.2-1ubuntu1 libsmartcols1_2.32-0.1ubuntu2 libsqlite3-0_3.25.3-1 libss2_1.44.4-2 libssl1.1_1.1.1-1ubuntu2 libstdc++-8-dev_8.2.0-9ubuntu1 libstdc++6_8.2.0-9ubuntu1 libsubunit-dev_1.3.0-1 libsubunit0_1.3.0-1 libsystemd0_239-7ubuntu10.1 libtasn1-6_4.13-3 libtinfo6_6.1+20180210-4ubuntu1 libtool_2.4.6-6 libtsan0_8.2.0-9ubuntu1 libubsan1_8.2.0-9ubuntu1 libudev1_239-7ubuntu10.1 libunistring2_0.9.10-1ubuntu1 libusb-0.1-4_2:0.1.12-32 libustr-1.0-1_1.0.4-6 libuuid1_2.32-0.1ubuntu2 libxml2_2.9.4+dfsg1-7ubuntu2 libyaml-0-2_0.2.1-1 libzstd1_1.3.5+dfsg-1ubuntu1 linux-libc-dev_4.18.0-11.12 lockfile-progs_0.1.18 login_1:4.5-1ubuntu1 lsb-base_9.20170808ubuntu1 m4_1.4.18-1ubuntu1 make_4.2.1-1.2 man-db_2.8.4-3 mawk_1.3.3-17ubuntu3 mount_2.32-0.1ubuntu2 multiarch-support_2.28-0ubuntu1 ncurses-base_6.1+20180210-4ubuntu1 ncurses-bin_6.1+20180210-4ubuntu1 openssl_1.1.1-1ubuntu2 optipng_0.7.6-1.1 passwd_1:4.5-1ubuntu1 patch_2.7.6-3 perl_5.28.0-3 perl-base_5.28.0-3 perl-modules-5.26_5.26.2-7 perl-modules-5.28_5.28.0-3 pinentry-curses_1.1.0-1build2 pkg-config_0.29.1-0ubuntu2 pkgbinarymangler_143 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu1 rake_12.3.1-3 readline-common_7.0-5 ruby_1:2.5.1 ruby-asciidoctor_1.5.7.1-1 ruby-did-you-mean_1.2.1-1 ruby-minitest_5.11.3-1 ruby-net-telnet_0.1.1-2 ruby-power-assert_1.1.1-1 ruby-test-unit_3.2.8-1 ruby-xmlrpc_0.3.0-2 ruby2.5_2.5.1-6ubuntu2 rubygems-integration_1.11 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-snp-sites-dummy_0.invalid.0 sed_4.5-2 sensible-utils_0.0.12 systemd_239-7ubuntu10.1 systemd-sysv_239-7ubuntu10.1 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu2 tar_1.30+dfsg-2 tzdata_2018g-1 ubuntu-keyring_2018.09.18.1 util-linux_2.32-0.1ubuntu2 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 zlib1g-dev_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Sat Oct 6 15:56:28 2018 UTC gpgv: using RSA key 5B34BA5AAB5507E903426E85E8D37AE2F09F4872 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./snp-sites_2.4.1-1.dsc dpkg-source: info: extracting snp-sites in snp-sites-2.4.1 dpkg-source: info: unpacking snp-sites_2.4.1.orig.tar.gz dpkg-source: info: unpacking snp-sites_2.4.1-1.debian.tar.xz Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-15636727 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-15636727 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-15636727 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package snp-sites dpkg-buildpackage: info: source version 2.4.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build snp-sites-2.4.1 dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean --with autoreconf dh_clean debian/rules build-arch dh build-arch --with autoreconf dh_update_autotools_config -a dh_autoreconf -a libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:13: installing './compile' configure.ac:7: installing './config.guess' configure.ac:7: installing './config.sub' configure.ac:2: installing './install-sh' configure.ac:2: installing './missing' src/Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' dh_auto_configure -a ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --libexecdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking build system type... aarch64-unknown-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for CHECK... yes checking whether make supports the include directive... yes (GNU style) checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking math.h usability... yes checking math.h presence... yes checking for math.h... yes checking getopt.h usability... yes checking getopt.h presence... yes checking for getopt.h... yes checking for floor in -lm... yes checking if zlib is wanted... yes checking for inflateEnd in -lz... yes checking for zlib.h... (cached) yes checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert aarch64-unknown-linux-gnu file names to aarch64-unknown-linux-gnu format... func_convert_file_noop checking how to convert aarch64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking whether gcc understands -c and -o together... (cached) yes checking dependency style of gcc... (cached) none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode dh_auto_build -a make -j4 make[1]: Entering directory '/<>' make all-recursive make[2]: Entering directory '/<>' Making all in src make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include --std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snp_sites-main.o `test -f 'main.c' || echo './'`main.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o alignment-file.lo alignment-file.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o vcf.lo vcf.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o phylib-of-snp-sites.lo phylib-of-snp-sites.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c vcf.c -fPIC -DPIC -o .libs/vcf.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c phylib-of-snp-sites.c -fPIC -DPIC -o .libs/phylib-of-snp-sites.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c alignment-file.c -fPIC -DPIC -o .libs/alignment-file.o /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snp-sites.lo snp-sites.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c phylib-of-snp-sites.c -o phylib-of-snp-sites.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c snp-sites.c -fPIC -DPIC -o .libs/snp-sites.o /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fasta-of-snp-sites.lo fasta-of-snp-sites.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c vcf.c -o vcf.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c fasta-of-snp-sites.c -fPIC -DPIC -o .libs/fasta-of-snp-sites.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c snp-sites.c -o snp-sites.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c fasta-of-snp-sites.c -o fasta-of-snp-sites.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c alignment-file.c -o alignment-file.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 1:0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib -o libsnp-sites.la -rpath /usr/lib/aarch64-linux-gnu alignment-file.lo vcf.lo phylib-of-snp-sites.lo snp-sites.lo fasta-of-snp-sites.lo -lz -lm libtool: link: gcc -shared -fPIC -DPIC .libs/alignment-file.o .libs/vcf.o .libs/phylib-of-snp-sites.o .libs/snp-sites.o .libs/fasta-of-snp-sites.o -L/usr/lib -lz -lm -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libsnp-sites.so.1 -o .libs/libsnp-sites.so.1.0.0 libtool: link: (cd ".libs" && rm -f "libsnp-sites.so.1" && ln -s "libsnp-sites.so.1.0.0" "libsnp-sites.so.1") libtool: link: (cd ".libs" && rm -f "libsnp-sites.so" && ln -s "libsnp-sites.so.1.0.0" "libsnp-sites.so") libtool: link: ar cru .libs/libsnp-sites.a alignment-file.o vcf.o phylib-of-snp-sites.o snp-sites.o fasta-of-snp-sites.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libsnp-sites.a libtool: link: ( cd ".libs" && rm -f "libsnp-sites.la" && ln -s "../libsnp-sites.la" "libsnp-sites.la" ) /bin/bash ../libtool --tag=CC --mode=link gcc --std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib -o snp-sites snp_sites-main.o libsnp-sites.la -lpthread -lz -lm libtool: link: gcc --std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/snp-sites snp_sites-main.o -L/usr/lib ./.libs/libsnp-sites.so -lpthread -lz -lm make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_auto_test -a make -j4 check VERBOSE=1 make[1]: Entering directory '/<>' Making check in src make[2]: Entering directory '/<>/src' make run-all-tests make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ../tests/run_all_tests-check-snp-sites.o `test -f '../tests/check-snp-sites.c' || echo './'`../tests/check-snp-sites.c gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ../tests/run_all_tests-check-vcf.o `test -f '../tests/check-vcf.c' || echo './'`../tests/check-vcf.c gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ../tests/run_all_tests-helper-methods.o `test -f '../tests/helper-methods.c' || echo './'`../tests/helper-methods.c gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ../tests/run_all_tests-run-all-tests.o `test -f '../tests/run-all-tests.c' || echo './'`../tests/run-all-tests.c /bin/bash ../libtool --tag=CC --mode=link gcc -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib -o run-all-tests ../tests/run_all_tests-check-snp-sites.o ../tests/run_all_tests-check-vcf.o ../tests/run_all_tests-helper-methods.o ../tests/run_all_tests-run-all-tests.o libsnp-sites.la -lpthread -lcheck_pic -pthread -lrt -lm -lsubunit -lz -lm libtool: link: gcc -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/run-all-tests ../tests/run_all_tests-check-snp-sites.o ../tests/run_all_tests-check-vcf.o ../tests/run_all_tests-helper-methods.o ../tests/run_all_tests-run-all-tests.o -pthread -L/usr/lib ./.libs/libsnp-sites.so -lpthread -lcheck_pic -lrt -lsubunit -lz -lm -pthread make[3]: Leaving directory '/<>/src' make check-TESTS make[3]: Entering directory '/<>/src' make[4]: Entering directory '/<>/src' PASS: run-all-tests ============================================================================ Testsuite summary for snp-sites 2.4.1 ============================================================================ # TOTAL: 1 # PASS: 1 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[4]: Leaving directory '/<>/src' make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --with autoreconf dh_testroot -a dh_prep -a dh_auto_install -a make -j1 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in src make[2]: Entering directory '/<>/src' make[3]: Entering directory '/<>/src' /bin/mkdir -p '/<>/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libsnp-sites.la '/<>/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libsnp-sites.so.1.0.0 /<>/debian/tmp/usr/lib/aarch64-linux-gnu/libsnp-sites.so.1.0.0 libtool: install: (cd /<>/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libsnp-sites.so.1.0.0 libsnp-sites.so.1 || { rm -f libsnp-sites.so.1 && ln -s libsnp-sites.so.1.0.0 libsnp-sites.so.1; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libsnp-sites.so.1.0.0 libsnp-sites.so || { rm -f libsnp-sites.so && ln -s libsnp-sites.so.1.0.0 libsnp-sites.so; }; }) libtool: install: /usr/bin/install -c .libs/libsnp-sites.lai /<>/debian/tmp/usr/lib/aarch64-linux-gnu/libsnp-sites.la libtool: install: /usr/bin/install -c .libs/libsnp-sites.a /<>/debian/tmp/usr/lib/aarch64-linux-gnu/libsnp-sites.a libtool: install: chmod 644 /<>/debian/tmp/usr/lib/aarch64-linux-gnu/libsnp-sites.a libtool: install: ranlib /<>/debian/tmp/usr/lib/aarch64-linux-gnu/libsnp-sites.a libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /bin/mkdir -p '/<>/debian/tmp/usr/bin' /bin/bash ../libtool --mode=install /usr/bin/install -c snp-sites '/<>/debian/tmp/usr/bin' libtool: warning: 'libsnp-sites.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/snp-sites /<>/debian/tmp/usr/bin/snp-sites /bin/mkdir -p '/<>/debian/tmp/usr/include/snp-sites' /usr/bin/install -c -m 644 alignment-file.h vcf.h phylib-of-snp-sites.h snp-sites.h fasta-of-snp-sites.h kseq.h '/<>/debian/tmp/usr/include/snp-sites' make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install d-shlibmove --commit \ --multiarch \ --exclude-la \ --movedev "debian/tmp/usr/include/snp-sites/*.h" usr/include/snp-sites \ debian/tmp/usr/lib/*/libsnp-sites.so Library package automatic movement utility --> zlib1g-dev package exists. set -e install -d -m 755 debian/libsnp-sites1-dev/usr/lib/aarch64-linux-gnu install -d -m 755 debian/libsnp-sites1/usr/lib/aarch64-linux-gnu mv debian/tmp/usr/lib/aarch64-linux-gnu/libsnp-sites.a debian/libsnp-sites1-dev/usr/lib/aarch64-linux-gnu mv debian/tmp/usr/lib/aarch64-linux-gnu/libsnp-sites.so debian/libsnp-sites1-dev/usr/lib/aarch64-linux-gnu mv /<>/debian/tmp/usr/lib/aarch64-linux-gnu/libsnp-sites.so.1 debian/libsnp-sites1/usr/lib/aarch64-linux-gnu mv /<>/debian/tmp/usr/lib/aarch64-linux-gnu/libsnp-sites.so.1.0.0 debian/libsnp-sites1/usr/lib/aarch64-linux-gnu PKGDEV=libsnp-sites1-dev PKGSHL=libsnp-sites1 install -d -m 755 debian/libsnp-sites1-dev/usr/include/snp-sites mv debian/tmp/usr/include/snp-sites/*.h debian/libsnp-sites1-dev/usr/include/snp-sites make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a debian/rules override_dh_installman make[1]: Entering directory '/<>' mkdir -p /<>/debian/man asciidoctor -a docdate='' -b manpage /<>/snp-sites.txt mv /<>/snp-sites.1 /<>/debian/man dh_installman -- make[1]: Leaving directory '/<>' dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: Depends field of package libsnp-sites1-dev: unknown substitution variable ${shlibs:Depends} dpkg-gencontrol: warning: package libsnp-sites1-dev: unused substitution variable ${devlibs:Depends} dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 143 INFO: pkgstriptranslations version 143 INFO: pkgstriptranslations version 143 pkgstriptranslations: processing snp-sites (in debian/snp-sites); do_strip: , oemstrip: pkgstriptranslations: processing libsnp-sites1 (in debian/libsnp-sites1); do_strip: , oemstrip: pkgstriptranslations: processing libsnp-sites1-dev (in debian/libsnp-sites1-dev); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/snp-sites/DEBIAN/control, package snp-sites, directory debian/snp-sites Searching for duplicated docs in dependency libsnp-sites1... symlinking changelog.Debian.gz in snp-sites to file in libsnp-sites1 pkgstripfiles: Running PNG optimization (using 4 cpus) for package snp-sites ... pkgstripfiles: No PNG files. dpkg-deb: building package 'snp-sites' in '../snp-sites_2.4.1-1_arm64.deb'. INFO: pkgstriptranslations version 143 pkgstriptranslations: processing snp-sites-dbgsym (in debian/.debhelper/snp-sites/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/snp-sites/dbgsym-root/DEBIAN/control, package snp-sites-dbgsym, directory debian/.debhelper/snp-sites/dbgsym-root dpkg-deb: building package 'snp-sites-dbgsym' in 'debian/.debhelper/scratch-space/build-snp-sites/snp-sites-dbgsym_2.4.1-1_arm64.deb'. Renaming snp-sites-dbgsym_2.4.1-1_arm64.deb to snp-sites-dbgsym_2.4.1-1_arm64.ddeb pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libsnp-sites1/DEBIAN/control, package libsnp-sites1, directory debian/libsnp-sites1 pkgstripfiles: Truncating usr/share/doc/libsnp-sites1/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package libsnp-sites1 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libsnp-sites1' in '../libsnp-sites1_2.4.1-1_arm64.deb'. INFO: pkgstriptranslations version 143 pkgstriptranslations: processing libsnp-sites1-dbgsym (in debian/.debhelper/libsnp-sites1/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/libsnp-sites1/dbgsym-root/DEBIAN/control, package libsnp-sites1-dbgsym, directory debian/.debhelper/libsnp-sites1/dbgsym-root dpkg-deb: building package 'libsnp-sites1-dbgsym' in 'debian/.debhelper/scratch-space/build-libsnp-sites1/libsnp-sites1-dbgsym_2.4.1-1_arm64.deb'. Renaming libsnp-sites1-dbgsym_2.4.1-1_arm64.deb to libsnp-sites1-dbgsym_2.4.1-1_arm64.ddeb pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libsnp-sites1-dev/DEBIAN/control, package libsnp-sites1-dev, directory debian/libsnp-sites1-dev Searching for duplicated docs in dependency libsnp-sites1... symlinking changelog.Debian.gz in libsnp-sites1-dev to file in libsnp-sites1 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libsnp-sites1-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libsnp-sites1-dev' in '../libsnp-sites1-dev_2.4.1-1_arm64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../snp-sites_2.4.1-1_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build snp-sites-2.4.1 dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20181109-2159 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ snp-sites_2.4.1-1_arm64.changes: -------------------------------- Format: 1.8 Date: Sat, 06 Oct 2018 17:54:44 +0200 Source: snp-sites Binary: snp-sites libsnp-sites1 libsnp-sites1-dev Architecture: arm64 Version: 2.4.1-1 Distribution: disco-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Sascha Steinbiss Description: libsnp-sites1 - Shared libraries of the package snp-sites libsnp-sites1-dev - Static libraries and header files for the package snp-sites snp-sites - Binary code for the package snp-sites Changes: snp-sites (2.4.1-1) unstable; urgency=medium . * New upstream release. Checksums-Sha1: 8022401e0f5374fa9f7df5f1d52b07539cfa504d 21044 libsnp-sites1-dbgsym_2.4.1-1_arm64.ddeb fc26642d23e8f809181deaf8dd60ee721d5986c6 13724 libsnp-sites1-dev_2.4.1-1_arm64.deb 71472445927ca594bcca072b63480742aebc4418 10792 libsnp-sites1_2.4.1-1_arm64.deb 04a25eecdba22e472ddfa7194ec3e307faac2cec 6592 snp-sites-dbgsym_2.4.1-1_arm64.ddeb b84bf7ee3748807a4b3ad60d8a0e2035fb464454 6758 snp-sites_2.4.1-1_arm64.buildinfo 80fe494dd93bc8b4d9d46659dc3b760db8a25832 10284 snp-sites_2.4.1-1_arm64.deb Checksums-Sha256: 04d57cf638f348a05277232ad445ddf1b2b9b7941a304e3f96a06e98fefbe40b 21044 libsnp-sites1-dbgsym_2.4.1-1_arm64.ddeb b68ebc85b11ce045372db9e1fc08d1e038e301e5d98a445bb0888ec021b5943b 13724 libsnp-sites1-dev_2.4.1-1_arm64.deb 41267fea748f1bcc4e0e06bfa340181f3c42760b81fbf249fe637536567a293d 10792 libsnp-sites1_2.4.1-1_arm64.deb b5356d6c9b2d41c88995871f38858b3e43ab9c05ab5762a665e3adfd72f56b14 6592 snp-sites-dbgsym_2.4.1-1_arm64.ddeb 6fe01813fdce4e48ae5c077c62b51ddbb4f44222c9284de38a9561c19eb3c0d4 6758 snp-sites_2.4.1-1_arm64.buildinfo bbb45e254e45f5507a8d4b5b679f1c7d0065ea3b08f3bcec0bc1659c9ad6fd43 10284 snp-sites_2.4.1-1_arm64.deb Files: c26b593875c1b5bc48a802c0ce8b12bb 21044 debug optional libsnp-sites1-dbgsym_2.4.1-1_arm64.ddeb c816e1f306e4729a6d3a386730bd03ef 13724 libdevel optional libsnp-sites1-dev_2.4.1-1_arm64.deb 1851d47733338b64459b1348d12af80f 10792 libs optional libsnp-sites1_2.4.1-1_arm64.deb 0c66a6590eb2987afaaa5f8de10c8066 6592 debug optional snp-sites-dbgsym_2.4.1-1_arm64.ddeb 2063cc380cb860f4b94db331a743d6d6 6758 science optional snp-sites_2.4.1-1_arm64.buildinfo da7f82b9b0c9b1e38518270fa384b41f 10284 science optional snp-sites_2.4.1-1_arm64.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libsnp-sites1-dev_2.4.1-1_arm64.deb ----------------------------------- new debian package, version 2.0. size 13724 bytes: control archive=1152 bytes. 1033 bytes, 25 lines control 652 bytes, 9 lines md5sums Package: libsnp-sites1-dev Source: snp-sites Version: 2.4.1-1 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 65 Depends: libsnp-sites1 (= 2.4.1-1) Conflicts: libsnp-sites-dev Provides: libsnp-sites-dev Section: libdevel Priority: optional Homepage: https://github.com/sanger-pathogens/snp-sites Description: Static libraries and header files for the package snp-sites Snp-sites finds single nucleotide polymorphism (SNP) sites from multi-fasta alignment input files (which might be compressed). Its output can be in various widely used formats (Multi Fasta Alignment, Vcf, phylip). . The software has been developed at the Wellcome Trust Sanger Institute. . This package contains the development files to include snp-sites into your own code. The library enables Python developers to make snp-sites function calls (Python bindings) through the Boost Python Library. drwxr-xr-x root/root 0 2018-10-06 15:54 ./ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/include/ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/include/snp-sites/ -rw-r--r-- root/root 1365 2018-10-06 15:54 ./usr/include/snp-sites/alignment-file.h -rw-r--r-- root/root 1145 2018-10-06 15:54 ./usr/include/snp-sites/fasta-of-snp-sites.h -rw-r--r-- root/root 8809 2018-10-06 15:54 ./usr/include/snp-sites/kseq.h -rw-r--r-- root/root 1149 2018-10-06 15:54 ./usr/include/snp-sites/phylib-of-snp-sites.h -rw-r--r-- root/root 2050 2018-10-06 15:54 ./usr/include/snp-sites/snp-sites.h -rw-r--r-- root/root 2005 2018-10-06 15:54 ./usr/include/snp-sites/vcf.h drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/lib/ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/lib/aarch64-linux-gnu/ -rw-r--r-- root/root 29396 2018-10-06 15:54 ./usr/lib/aarch64-linux-gnu/libsnp-sites.a lrwxrwxrwx root/root 0 2018-10-06 15:54 ./usr/lib/aarch64-linux-gnu/libsnp-sites.so -> libsnp-sites.so.1.0.0 drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/share/ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/share/doc/libsnp-sites1-dev/ -rw-r--r-- root/root 504 2018-10-06 15:54 ./usr/share/doc/libsnp-sites1-dev/README.Debian lrwxrwxrwx root/root 0 2018-10-06 15:54 ./usr/share/doc/libsnp-sites1-dev/changelog.Debian.gz -> ../libsnp-sites1/changelog.Debian.gz -rw-r--r-- root/root 2334 2018-10-06 15:54 ./usr/share/doc/libsnp-sites1-dev/copyright libsnp-sites1_2.4.1-1_arm64.deb ------------------------------- new debian package, version 2.0. size 10792 bytes: control archive=988 bytes. 812 bytes, 20 lines control 236 bytes, 3 lines md5sums 29 bytes, 1 lines shlibs 74 bytes, 2 lines triggers Package: libsnp-sites1 Source: snp-sites Version: 2.4.1-1 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 37 Depends: libc6 (>= 2.17), zlib1g (>= 1:1.1.4) Section: libs Priority: optional Homepage: https://github.com/sanger-pathogens/snp-sites Description: Shared libraries of the package snp-sites Snp-sites finds single nucleotide polymorphism (SNP) sites from multi-fasta alignment input files (which might be compressed). Its output can be in various widely used formats (Multi Fasta Alignment, Vcf, phylip). . The software has been developed at the Wellcome Trust Sanger Institute. . This package contains the dynamic library uses by snp-sites. drwxr-xr-x root/root 0 2018-10-06 15:54 ./ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/lib/ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/lib/aarch64-linux-gnu/ lrwxrwxrwx root/root 0 2018-10-06 15:54 ./usr/lib/aarch64-linux-gnu/libsnp-sites.so.1 -> libsnp-sites.so.1.0.0 -rw-r--r-- root/root 22296 2018-10-06 15:54 ./usr/lib/aarch64-linux-gnu/libsnp-sites.so.1.0.0 drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/share/ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/share/doc/libsnp-sites1/ -rw-r--r-- root/root 696 2018-10-06 15:54 ./usr/share/doc/libsnp-sites1/changelog.Debian.gz -rw-r--r-- root/root 2334 2018-10-06 15:54 ./usr/share/doc/libsnp-sites1/copyright snp-sites_2.4.1-1_arm64.deb --------------------------- new debian package, version 2.0. size 10284 bytes: control archive=1152 bytes. 1218 bytes, 25 lines control 331 bytes, 5 lines md5sums Package: snp-sites Version: 2.4.1-1 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 33 Depends: libc6 (>= 2.17), libsnp-sites1 Section: science Priority: optional Homepage: https://github.com/sanger-pathogens/snp-sites Description: Binary code for the package snp-sites This program finds single nucleotide polymorphism (SNP) sites from multi-fasta alignment input files (which might be compressed). Its output can be in various widely used formats (Multi Fasta Alignment, Vcf, phylip). . The software has been developed at the Wellcome Trust Sanger Institute. . A Single Nucleotide - polymorphism (SNP, pronounced snip; plural snips) is a DNA sequence variation occurring when a Single Nucleotide — A, T, C or G — in the genome (or other shared sequence) differs between members of a biological species or paired chromosomes. For example, two sequenced DNA fragments from different individuals, AAGCCTA to AAGCTTA, contain a difference in a single nucleotide. In this case there are two alleles. Almost all common SNPs have only two alleles. drwxr-xr-x root/root 0 2018-10-06 15:54 ./ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/bin/ -rwxr-xr-x root/root 14264 2018-10-06 15:54 ./usr/bin/snp-sites drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/share/ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/share/doc/snp-sites/ -rw-r--r-- root/root 378 2018-10-06 15:54 ./usr/share/doc/snp-sites/README.Debian -rw-r--r-- root/root 2572 2018-10-04 10:37 ./usr/share/doc/snp-sites/README.md.gz lrwxrwxrwx root/root 0 2018-10-06 15:54 ./usr/share/doc/snp-sites/changelog.Debian.gz -> ../libsnp-sites1/changelog.Debian.gz -rw-r--r-- root/root 2334 2018-10-06 15:54 ./usr/share/doc/snp-sites/copyright drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/share/man/ drwxr-xr-x root/root 0 2018-10-06 15:54 ./usr/share/man/man1/ -rw-r--r-- root/root 1396 2018-10-06 15:54 ./usr/share/man/man1/snp-sites.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build-Space: 21908 Build-Time: 51 Distribution: disco-proposed Host Architecture: arm64 Install-Time: 18 Job: snp-sites_2.4.1-1.dsc Machine Architecture: arm64 Package: snp-sites Package-Time: 71 Source-Version: 2.4.1-1 Space: 21908 Status: successful Version: 2.4.1-1 -------------------------------------------------------------------------------- Finished at 20181109-2159 Build needed 00:01:11, 21908k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=disco --arch=arm64 PACKAGEBUILD-15636727 Scanning for processes to kill in build PACKAGEBUILD-15636727