smalt 0.7.6-8 source package in Ubuntu
Changelog
smalt (0.7.6-8) unstable; urgency=medium * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.2.1 * Do not autoreconf since config is broken -- Andreas Tille <email address hidden> Wed, 24 Oct 2018 21:08:08 +0200
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any all
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
Series | Published | Component | Section |
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Downloads
File | Size | SHA-256 Checksum |
---|---|---|
smalt_0.7.6-8.dsc | 2.0 KiB | fc61fc8eff4375cc6c6a46e21a0cd53897a451467e1299173d1508a977bfaa16 |
smalt_0.7.6.orig.tar.gz | 68.9 MiB | 89ccdfe471edba3577b43de9ebfdaedb5cd6e26b02bf4000c554253433796b31 |
smalt_0.7.6-8.debian.tar.xz | 4.9 KiB | 70b53b8d068b2f040c886fb636f3dc02e5a3831042fb0c1eda7a1950614106f5 |
Available diffs
- diff from 0.7.6-7 to 0.7.6-8 (940 bytes)
No changes file available.
Binary packages built by this source
- smalt: Sequence Mapping and Alignment Tool
SMALT efficiently aligns DNA sequencing reads with a reference genome.
Reads from a wide range of sequencing platforms, for example Illumina,
Roche-454, Ion Torrent, PacBio or ABI-Sanger, can be processed including
paired reads.
.
The software employs a perfect hash index of short words (< 20
nucleotides long), sampled at equidistant steps along the genomic
reference sequences.
.
For each read, potentially matching segments in the reference are
identified from seed matches in the index and subsequently aligned with
the read using a banded Smith-Waterman algorithm.
.
The best gapped alignments of each read is reported including a score
for the reliability of the best mapping. The user can adjust the
trade-off between sensitivity and speed by tuning the length and spacing
of the hashed words.
.
A mode for the detection of split (chimeric) reads is provided.
Multi-threaded program execution is supported.
- smalt-dbgsym: No summary available for smalt-dbgsym in ubuntu disco.
No description available for smalt-dbgsym in ubuntu disco.
- smalt-examples: No summary available for smalt-examples in ubuntu eoan.
No description available for smalt-examples in ubuntu eoan.