smalt 0.7.6-7 source package in Ubuntu
Changelog
smalt (0.7.6-7) unstable; urgency=medium * Moved packaging from SVN to Git * drop "Testsuite: autopkgtest" from d/control * Remark: since autoreconf does not work the package was not switched to debhelper 10 * Standards-Version: 4.1.1 * Remove unused lintian-override * debhelper tools from autotools-dev has been replaced by the tool dh_update_autotools_config -- Andreas Tille <email address hidden> Mon, 20 Nov 2017 12:41:33 +0100
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any all
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
Series | Published | Component | Section | |
---|---|---|---|---|
Bionic | release | universe | misc |
Downloads
File | Size | SHA-256 Checksum |
---|---|---|
smalt_0.7.6-7.dsc | 2.0 KiB | 70ed1be6a1761306a4df9276fe5c5cc5efbd1ae7dfc5f0aa239ab441646498a6 |
smalt_0.7.6.orig.tar.gz | 68.9 MiB | 89ccdfe471edba3577b43de9ebfdaedb5cd6e26b02bf4000c554253433796b31 |
smalt_0.7.6-7.debian.tar.xz | 4.8 KiB | 16ab3e8ea0cc893330db3cbdf42a68548a237340c4b639aeb611046ac5408172 |
Available diffs
- diff from 0.7.6-6 to 0.7.6-7 (1.3 KiB)
No changes file available.
Binary packages built by this source
- smalt: No summary available for smalt in ubuntu disco.
No description available for smalt in ubuntu disco.
- smalt-dbgsym: No summary available for smalt-dbgsym in ubuntu cosmic.
No description available for smalt-dbgsym in ubuntu cosmic.
- smalt-examples: Sequence Mapping and Alignment Tool (examples)
SMALT efficiently aligns DNA sequencing reads with a reference genome.
Reads from a wide range of sequencing platforms, for example Illumina,
Roche-454, Ion Torrent, PacBio or ABI-Sanger, can be processed including
paired reads.
.
The software employs a perfect hash index of short words (< 20
nucleotides long), sampled at equidistant steps along the genomic
reference sequences.
.
For each read, potentially matching segments in the reference are
identified from seed matches in the index and subsequently aligned with
the read using a banded Smith-Waterman algorithm.
.
The best gapped alignments of each read is reported including a score
for the reliability of the best mapping. The user can adjust the
trade-off between sensitivity and speed by tuning the length and spacing
of the hashed words.
.
A mode for the detection of split (chimeric) reads is provided.
Multi-threaded program execution is supported.
.
This package contains example data and a test suite to test the data.