Ubuntu
smalt package

smalt 0.7.6-7 source package in Ubuntu

Changelog

smalt (0.7.6-7) unstable; urgency=medium

  * Moved packaging from SVN to Git
  * drop "Testsuite: autopkgtest" from d/control
  * Remark: since autoreconf does not work the package was not switched to
    debhelper 10
  * Standards-Version: 4.1.1
  * Remove unused lintian-override
  * debhelper tools from autotools-dev has been replaced by the tool
    dh_update_autotools_config

 -- Andreas Tille <email address hidden>  Mon, 20 Nov 2017 12:41:33 +0100

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any all
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Bionic release universe misc

Downloads

File Size SHA-256 Checksum
smalt_0.7.6-7.dsc 2.0 KiB 70ed1be6a1761306a4df9276fe5c5cc5efbd1ae7dfc5f0aa239ab441646498a6
smalt_0.7.6.orig.tar.gz 68.9 MiB 89ccdfe471edba3577b43de9ebfdaedb5cd6e26b02bf4000c554253433796b31
smalt_0.7.6-7.debian.tar.xz 4.8 KiB 16ab3e8ea0cc893330db3cbdf42a68548a237340c4b639aeb611046ac5408172

Available diffs

No changes file available.

Binary packages built by this source

smalt: No summary available for smalt in ubuntu disco.

No description available for smalt in ubuntu disco.

smalt-dbgsym: No summary available for smalt-dbgsym in ubuntu cosmic.

No description available for smalt-dbgsym in ubuntu cosmic.

smalt-examples: Sequence Mapping and Alignment Tool (examples)

 SMALT efficiently aligns DNA sequencing reads with a reference genome.
 Reads from a wide range of sequencing platforms, for example Illumina,
 Roche-454, Ion Torrent, PacBio or ABI-Sanger, can be processed including
 paired reads.
 .
 The software employs a perfect hash index of short words (< 20
 nucleotides long), sampled at equidistant steps along the genomic
 reference sequences.
 .
 For each read, potentially matching segments in the reference are
 identified from seed matches in the index and subsequently aligned with
 the read using a banded Smith-Waterman algorithm.
 .
 The best gapped alignments of each read is reported including a score
 for the reliability of the best mapping. The user can adjust the
 trade-off between sensitivity and speed by tuning the length and spacing
 of the hashed words.
 .
 A mode for the detection of split (chimeric) reads is provided.
 Multi-threaded program execution is supported.
 .
 This package contains example data and a test suite to test the data.