Ubuntu
seqmagick package

seqmagick 0.8.6-2 source package in Ubuntu

Changelog

seqmagick (0.8.6-2) unstable; urgency=medium

  * replace-ungap.patch: new: fix test failure. (Closes: #1066772)
  * d/{rules,control}: activate autodep8-pybuild.
    This change increases autopkgtest coverage by running upstream test
    suite in such context.

 -- Étienne Mollier <email address hidden>  Sun, 17 Mar 2024 18:11:48 +0100

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
all
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Oracular release universe misc

Builds

Oracular: [FULLYBUILT] amd64

Downloads

File Size SHA-256 Checksum
seqmagick_0.8.6-2.dsc 2.2 KiB a7f3133e280f7b47270e45ec1f66472c8bf6847b5badbc1104b6e021fb69f220
seqmagick_0.8.6.orig.tar.gz 649.0 KiB 83a83bbbf76eae756e96470075b729f2ae78a017a9432330133c6f94d9d49cba
seqmagick_0.8.6-2.debian.tar.xz 5.6 KiB 0928428c9540ec6c3326c27ced9509c09db45438a03951e5e79d3e6dfa69b15b

Available diffs

No changes file available.

Binary packages built by this source

seqmagick: imagemagick-like frontend to Biopython SeqIO

 Seqmagick is a little utility to expose the file format conversion
 in BioPython in a convenient way.
 .
 Features include:
 .
  * Modifying sequences:
    - Remove gaps
    - Reverse & reverse complement
    - Trim to a range of residues
    - Change case
    - Sort by length or ID
  * Displaying information about sequence files
  * Subsetting sequence files by:
    - Position
    - ID
    - Deduplication
  * Filtering sequences by quality score
  * Trimming alignments to a region of interest defined by the forward
    and reverse primers