seer 1.1.4-8 source package in Ubuntu
Changelog
seer (1.1.4-8) unstable; urgency=medium * Team upload * Building with --std=c++14 to comply with newest dlib (Closes: #1074123) -- Pierre Gruet <email address hidden> Fri, 26 Jul 2024 09:57:43 +0200
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section | |
|---|---|---|---|---|
| Oracular | release | universe | misc |
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| seer_1.1.4-8.dsc | 2.0 KiB | 9505e955231f95bec15e7ec572a2b1fa2198fd2a9b71a8e14f2735e8678857a2 |
| seer_1.1.4.orig.tar.gz | 949.4 KiB | 96e55b9fe2cde089ff05bbcd55088832e90f44a968a81a8dca9f9cffa6faa9c1 |
| seer_1.1.4-8.debian.tar.xz | 9.2 KiB | da8005864a8263d365688589347dde52f8b3b1b8f14815ea2b217d4a517878a7 |
Available diffs
No changes file available.
Binary packages built by this source
- seer: genomic sequence element (kmer) enrichment analysis
Bacterial genomes vary extensively in terms of both gene content and
gene sequence - this plasticity hampers the use of traditional SNP-based
methods for identifying all genetic associations with phenotypic
variation. SEER provides a computationally scalable and widely
applicable statistical method for the identification of sequence
elements that are significantly enriched in a phenotype of interest.
SEER is applicable to even tens of thousands of genomes by counting variable-
length k-mers using a distributed string-mining algorithm. Robust
options are provided for association analysis that also correct for the
clonal population structure of bacteria. Using large collections of
genomes of the major human pathogen Streptococcus pneumoniae, SEER
identifies relevant previously characterised resistance determinants for
several antibiotics.
- seer-dbgsym: debug symbols for seer
