Ubuntu
seer package

seer 1.1.4-7 source package in Ubuntu

Changelog

seer (1.1.4-7) unstable; urgency=medium

  * d/watch: repair github changes; move to git mode.
  * Standards-Version: 4.6.1 (routine-update)
  * typos.patch: add; fix typos caught by lintian.
  * d/m/blastn_to_phandango.1: new manual page.
  * d/control: add myself to uploaders.
  * d/copyright: refresh debian/ copyright years.

 -- Étienne Mollier <email address hidden>  Sun, 06 Nov 2022 15:38:02 +0100

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Mantic release universe misc
Lunar release universe misc

Downloads

File Size SHA-256 Checksum
seer_1.1.4-7.dsc 2.1 KiB c40fd4eb5bcd74a55c7c373623a9c528a5b6abcf08f3f5d482ffe03ce82994c3
seer_1.1.4.orig.tar.gz 949.4 KiB 96e55b9fe2cde089ff05bbcd55088832e90f44a968a81a8dca9f9cffa6faa9c1
seer_1.1.4-7.debian.tar.xz 9.0 KiB e5ce6e926a188bdba50a2c3665be704ac5c017a4bc1404cac442d8c553014e51

No changes file available.

Binary packages built by this source

seer: genomic sequence element (kmer) enrichment analysis

 Bacterial genomes vary extensively in terms of both gene content and
 gene sequence - this plasticity hampers the use of traditional SNP-based
 methods for identifying all genetic associations with phenotypic
 variation. SEER provides a computationally scalable and widely
 applicable statistical method for the identification of sequence
 elements that are significantly enriched in a phenotype of interest.
 SEER is applicable to even tens of thousands of genomes by counting variable-
 length k-mers using a distributed string-mining algorithm. Robust
 options are provided for association analysis that also correct for the
 clonal population structure of bacteria. Using large collections of
 genomes of the major human pathogen Streptococcus pneumoniae, SEER
 identifies relevant previously characterised resistance determinants for
 several antibiotics.

seer-dbgsym: debug symbols for seer