The bcftools command from the samtools package crashes

[Kumbarov]

When I run the following command, bcftools crashes:

curl -s "ftp://ftp-trace.ncbi.nih.gov//1000genomes/ftp/release/20130502/ALL.chrY.phase3_integrated_v1a.20130502.genotypes.vcf.gz" | gunzip -c | bcftools view --force-samples --samples NA12155 -
view: invalid option -- '-'
view: invalid option -- 'f'
view: invalid option -- 'o'
view: invalid option -- 'r'
view: invalid option -- '-'
view: invalid option -- '-'
open: No such file or directory
Segmentation fault (core dumped)

curl -s "ftp://ftp-trace.ncbi.nih.gov//1000genomes/ftp/release/20130502/ALL.chrY.phase3_integrated_v1a.20130502.genotypes.vcf.gz" | gunzip -c | bcftools view -samples NA12155 -
open: No such file or directory
Segmentation fault (core dumped)

If I download the source code from GitHub, compile it and use that version of bcftools, it works fine.

ProblemType: Bug
DistroRelease: Ubuntu 14.04
Package: samtools 0.1.19-1
ProcVersionSignature: Ubuntu 3.13.0-48.80-generic 3.13.11-ckt16
Uname: Linux 3.13.0-48-generic x86_64
NonfreeKernelModules: vtsspp sep3_15 pax nvidia
ApportVersion: 2.14.1-0ubuntu3.8
Architecture: amd64
CurrentDesktop: Unity
Date: Sat Apr 4 00:46:26 2015
InstallationDate: Installed on 2014-12-31 (93 days ago)
InstallationMedia: Ubuntu 14.04.1 LTS "Trusty Tahr" - Release amd64 (20140722.2)
SourcePackage: samtools
UpgradeStatus: No upgrade log present (probably fresh install)

[Dylan Aïssi (daissi)]

Hi,
bcftools is not anymore in the samtools package since Zesty and I cannot reproduce with bcftools from bcftools package 1.3.1-1.
Do you still have this issue?

[Launchpad Janitor (janitor)]

[Expired for samtools (Ubuntu) because there has been no activity for 60 days.]