ruby-crb-blast 0.6.9-5 source package in Ubuntu
Changelog
ruby-crb-blast (0.6.9-5) unstable; urgency=medium
* Team upload.
[ Debian Janitor ]
* Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
Repository-Browse.
* Remove obsolete field Name from debian/upstream/metadata (already
present in machine-readable debian/copyright).
* Update watch file format version to 4.
* Bump debhelper from old 12 to 13.
* Update standards version to 4.5.1, no changes needed.
[ Aquila Macedo ]
* d/control: bumped Standards-Version to 4.6.2.
* d/watch: updated watch file reference link.
* d/control: replaced 'ruby-interpreter' to '${ruby:Depends}'.
-- Aquila Macedo Costa <email address hidden> Thu, 13 Jul 2023 20:24:04 -0300
Upload details
- Uploaded by:
- Debian Ruby Extras Maintainers
- Uploaded to:
- Sid
- Original maintainer:
- Debian Ruby Extras Maintainers
- Architectures:
- all
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section | |
|---|---|---|---|---|
| Oracular | release | universe | misc | |
| Noble | release | universe | misc | |
| Mantic | release | universe | misc |
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| ruby-crb-blast_0.6.9-5.dsc | 2.1 KiB | aa27062e931b44e67e0b5b03984e6e5e16d965ffead6995307451096aa563bf5 |
| ruby-crb-blast_0.6.9.orig.tar.gz | 36.4 KiB | 08af1561894b06df022485792be28d754d56fc1147ba1aa6c9c16e1aef179725 |
| ruby-crb-blast_0.6.9-5.debian.tar.xz | 5.6 KiB | 2849e9137256ba79c722159022bf040708e342e48f5f65b127c4923fa35e1f5e |
Available diffs
- diff from 0.6.9-4 to 0.6.9-5 (1.1 KiB)
No changes file available.
Binary packages built by this source
- ruby-crb-blast: Run conditional reciprocal best blast
CRB-BLAST is a novel method for finding orthologs between one set of sequences
and another. This is particularly useful in genome and transcriptome
annotation.
.
CRB-BLAST initially performs a standard reciprocal best BLAST. It does this by
performing BLAST alignments of query->target and target->query. Reciprocal
best BLAST hits are those where the best match for any given query sequence in
the query->target alignment is also the best hit of the match in the reverse
(target->query) alignment.
.
Reciprocal best BLAST is a very conservative way to assign orthologs. The main
innovation in CRB-BLAST is to learn an appropriate e-value cutoff to apply to
each pairwise alignment by taking into account the overall relatedness of the
two datasets being compared. This is done by fitting a function to the
distribution of alignment e-values over sequence lengths. The function
provides the e-value cutoff for a sequence of given length.
