ruby-crb-blast 0.6.9-1 source package in Ubuntu
Changelog
ruby-crb-blast (0.6.9-1) unstable; urgency=medium * New upstream release. Tests pass again. (Closes: #890691) -- Michael R. Crusoe <email address hidden> Fri, 02 Mar 2018 08:03:29 -0800
Upload details
- Uploaded by:
- Debian Ruby Extras Maintainers
- Uploaded to:
- Sid
- Original maintainer:
- Debian Ruby Extras Maintainers
- Architectures:
- all
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section | |
|---|---|---|---|---|
| Bionic | release | universe | misc |
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| ruby-crb-blast_0.6.9-1.dsc | 2.1 KiB | ca29083359b7b68b153ea4aed8923b522d1600791b3ccfb1b969eb639ec3d972 |
| ruby-crb-blast_0.6.9.orig.tar.gz | 36.4 KiB | 08af1561894b06df022485792be28d754d56fc1147ba1aa6c9c16e1aef179725 |
| ruby-crb-blast_0.6.9-1.debian.tar.xz | 4.4 KiB | 0974101c8156d4579f587c1188dcdd578d4ace397cc5c2d67259e5324d6547f1 |
Available diffs
- diff from 0.6.8-1 to 0.6.9-1 (1.9 KiB)
No changes file available.
Binary packages built by this source
- ruby-crb-blast: Run conditional reciprocal best blast
CRB-BLAST is a novel method for finding orthologs between one set of sequences
and another. This is particularly useful in genome and transcriptome
annotation.
.
CRB-BLAST initially performs a standard reciprocal best BLAST. It does this by
performing BLAST alignments of query->target and target->query. Reciprocal
best BLAST hits are those where the best match for any given query sequence in
the query->target alignment is also the best hit of the match in the reverse
(target->query) alignment.
.
Reciprocal best BLAST is a very conservative way to assign orthologs. The main
innovation in CRB-BLAST is to learn an appropriate e-value cutoff to apply to
each pairwise alignment by taking into account the overall relatedness of the
two datasets being compared. This is done by fitting a function to the
distribution of alignment e-values over sequence lengths. The function
provides the e-value cutoff for a sequence of given length.
