Ubuntu
reapr package

reapr 1.0.18+dfsg-6 source package in Ubuntu

Changelog

reapr (1.0.18+dfsg-6) unstable; urgency=medium

  * Team upload.

  [ Matthias Klose ]
  * Drop hard-coded dependency on shared library. ${shlib:Depends} is
    working these days.
    Closes: #1068432

  [ Andreas Tille ]
  * Standards-Version: 4.6.2 (routine-update)
  * debhelper-compat 13 (routine-update)
  * Rules-Requires-Root: no (routine-update)
  Update renamed lintian tag names in lintian overrides.
  * watch file standard 4 (routine-update)

 -- Andreas Tille <email address hidden>  Fri, 05 Apr 2024 08:55:49 +0200

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Oracular release universe misc

Downloads

File Size SHA-256 Checksum
reapr_1.0.18+dfsg-6.dsc 2.1 KiB 16225f5271e44a92eb4f1fdae5c3b0175b1ff0ccc9b2a1ee5afc2fc60ecbf791
reapr_1.0.18+dfsg.orig.tar.gz 72.9 KiB 70a9c252474fbbd36360c49589af18ca1599289eff2e98fb8cb7614583cb28a6
reapr_1.0.18+dfsg-6.debian.tar.xz 312.3 KiB f1a5536155e98b80e5fca6a5c249a27ba10cc98c3c8542ce0c4265cb6f9cdf3a

No changes file available.

Binary packages built by this source

reapr: universal tool for genome assembly evaluation

 REAPR is a tool that evaluates the accuracy of a genome assembly using mapped
 paired end reads, without the use of a reference genome for comparison. It can
 be used in any stage of an assembly pipeline to automatically break incorrect
 scaffolds and flag other errors in an assembly for manual inspection. It
 reports mis-assemblies and other warnings, and produces a new broken assembly
 based on the error calls.
 .
 The software requires as input an assembly in FASTA format and paired reads
 mapped to the assembly in a BAM file. Mapping information such as the fragment
 coverage and insert size distribution is analysed to locate mis-assemblies.
 REAPR works best using mapped read pairs from a large insert library (at least
 1000bp). Additionally, if a short insert Illumina library is also available,
 REAPR can combine this with the large insert library in order to score each
 base of the assembly.

reapr-dbgsym: debug symbols for reapr