Ubuntu
reapr package

reapr 1.0.18+dfsg-5build2 source package in Ubuntu

Changelog

reapr (1.0.18+dfsg-5build2) lunar; urgency=medium

  * No-change rebuild against libbamtools2.5.2

 -- Steve Langasek <email address hidden>  Sat, 19 Nov 2022 21:52:26 +0000

Upload details

Uploaded by:
Steve Langasek
Uploaded to:
Lunar
Original maintainer:
Ubuntu Developers
Architectures:
any
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Mantic release universe misc
Lunar release universe misc

Downloads

File Size SHA-256 Checksum
reapr_1.0.18+dfsg.orig.tar.gz 72.9 KiB 70a9c252474fbbd36360c49589af18ca1599289eff2e98fb8cb7614583cb28a6
reapr_1.0.18+dfsg-5build2.debian.tar.xz 312.3 KiB ebdbd955011cfcd61f2c56f13c8210befcc9e7f5ea0bad350222c21d7e7f939e
reapr_1.0.18+dfsg-5build2.dsc 2.2 KiB 0ee3d5deb2ddfd839d8a19d13cf78503c1d9a417f69af14ce6ff4104adf7cc6d

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Binary packages built by this source

reapr: universal tool for genome assembly evaluation

 REAPR is a tool that evaluates the accuracy of a genome assembly using mapped
 paired end reads, without the use of a reference genome for comparison. It can
 be used in any stage of an assembly pipeline to automatically break incorrect
 scaffolds and flag other errors in an assembly for manual inspection. It
 reports mis-assemblies and other warnings, and produces a new broken assembly
 based on the error calls.
 .
 The software requires as input an assembly in FASTA format and paired reads
 mapped to the assembly in a BAM file. Mapping information such as the fragment
 coverage and insert size distribution is analysed to locate mis-assemblies.
 REAPR works best using mapped read pairs from a large insert library (at least
 1000bp). Additionally, if a short insert Illumina library is also available,
 REAPR can combine this with the large insert library in order to score each
 base of the assembly.

reapr-dbgsym: debug symbols for reapr