reapr 1.0.18+dfsg-5build1 source package in Ubuntu


reapr (1.0.18+dfsg-5build1) focal; urgency=medium

  * No-change rebuild for libgcc-s1 package name change.

 -- Matthias Klose <email address hidden>  Tue, 24 Mar 2020 15:15:24 +0100

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Matthias Klose
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Debian Med
Medium Urgency

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Kinetic release universe misc
Jammy release universe misc
Focal release universe misc


File Size SHA-256 Checksum
reapr_1.0.18+dfsg.orig.tar.gz 72.9 KiB 70a9c252474fbbd36360c49589af18ca1599289eff2e98fb8cb7614583cb28a6
reapr_1.0.18+dfsg-5build1.debian.tar.xz 312.2 KiB 5560783e95697294b8f8e8ca379c23902378ee993fc3355b1e8b89a784c07f0e
reapr_1.0.18+dfsg-5build1.dsc 2.2 KiB be8e095bbe40b3fd05f5c4e3983fb9cb35b5c3c319ab43b0783d5648671156f2

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Binary packages built by this source

reapr: universal tool for genome assembly evaluation

 REAPR is a tool that evaluates the accuracy of a genome assembly using mapped
 paired end reads, without the use of a reference genome for comparison. It can
 be used in any stage of an assembly pipeline to automatically break incorrect
 scaffolds and flag other errors in an assembly for manual inspection. It
 reports mis-assemblies and other warnings, and produces a new broken assembly
 based on the error calls.
 The software requires as input an assembly in FASTA format and paired reads
 mapped to the assembly in a BAM file. Mapping information such as the fragment
 coverage and insert size distribution is analysed to locate mis-assemblies.
 REAPR works best using mapped read pairs from a large insert library (at least
 1000bp). Additionally, if a short insert Illumina library is also available,
 REAPR can combine this with the large insert library in order to score each
 base of the assembly.

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