https://launchpad.net/ubuntu/+source/r-cran-qtl/1.50-1/+build/22305836 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-049 4.15.0-159-generic #167-Ubuntu SMP Mon Sep 20 23:06:52 UTC 2021 aarch64 Buildd toolchain package versions: launchpad-buildd_203~505~ubuntu18.04.1 python3-lpbuildd_203~505~ubuntu18.04.1 sbuild_0.75.0-1ubuntu1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu16.04.1 bzr_2.7.0+bzr6622-10 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu18.04.1 git_1:2.17.1-1ubuntu0.9 dpkg-dev_1.19.0.5ubuntu2.3 python-debian_0.1.32 python3-debian_0.1.32. Syncing the system clock with the buildd NTP service... 19 Oct 18:04:46 ntpdate[1707]: adjust time server 10.211.37.1 offset -0.001262 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=jammy --arch=armhf PACKAGEBUILD-22305836 --image-type chroot /home/buildd/filecache-default/679b34c61ac674bf7a7b60a9cca5f3e60877d1fc Creating target for build PACKAGEBUILD-22305836 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=jammy --arch=armhf PACKAGEBUILD-22305836 Starting target for build PACKAGEBUILD-22305836 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=jammy --arch=armhf PACKAGEBUILD-22305836 'deb http://ftpmaster.internal/ubuntu jammy main universe' 'deb http://ftpmaster.internal/ubuntu jammy-security main universe' 'deb http://ftpmaster.internal/ubuntu jammy-updates main universe' 'deb http://ftpmaster.internal/ubuntu jammy-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-22305836 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=jammy --arch=armhf PACKAGEBUILD-22305836 Updating target for build PACKAGEBUILD-22305836 Get:1 http://ftpmaster.internal/ubuntu jammy InRelease [224 kB] Get:2 http://ftpmaster.internal/ubuntu jammy-security InRelease [74.9 kB] Get:3 http://ftpmaster.internal/ubuntu jammy-updates InRelease [74.9 kB] Get:4 http://ftpmaster.internal/ubuntu jammy-proposed InRelease [74.9 kB] Get:5 http://ftpmaster.internal/ubuntu jammy/main armhf Packages [1351 kB] Get:6 http://ftpmaster.internal/ubuntu jammy/main Translation-en [512 kB] Get:7 http://ftpmaster.internal/ubuntu jammy/universe armhf Packages [13.0 MB] Get:8 http://ftpmaster.internal/ubuntu jammy/universe Translation-en [5464 kB] Get:9 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf Packages [258 kB] Get:10 http://ftpmaster.internal/ubuntu jammy-proposed/main Translation-en [100 kB] Get:11 http://ftpmaster.internal/ubuntu jammy-proposed/universe armhf Packages [1861 kB] Get:12 http://ftpmaster.internal/ubuntu jammy-proposed/universe Translation-en [1001 kB] Fetched 24.0 MB in 8s (3005 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt base-files base-passwd bsdutils bzip2 ca-certificates coreutils debianutils fakeroot gzip libapparmor1 libapt-pkg6.0 libargon2-1 libattr1 libaudit-common libaudit1 libblkid1 libbz2-1.0 libcap-ng0 libcap2 libcrypt-dev libcrypt1 libdb5.3 libdebconfclient0 libfakeroot libgdbm-compat4 libgdbm6 libgmp10 libgpg-error0 libgssapi-krb5-2 libhogweed6 libidn2-0 libip4tc2 libisl23 libjson-c5 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblz4-1 liblzma5 libmount1 libmpc3 libmpfr6 libncurses6 libncursesw6 libnettle8 libnpth0 libp11-kit0 libpcre3 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsmartcols1 libsqlite3-0 libtasn1-6 libtinfo6 libuuid1 libzstd1 lockfile-progs make mawk mount ncurses-base ncurses-bin optipng patch pinentry-curses readline-common sed sensible-utils sysvinit-utils tar util-linux xz-utils 77 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 12.5 MB of archives. After this operation, 25.6 kB disk space will be freed. Get:1 http://ftpmaster.internal/ubuntu jammy/main armhf libcrypt-dev armhf 1:4.4.18-4ubuntu2 [122 kB] Get:2 http://ftpmaster.internal/ubuntu jammy/main armhf libcrypt1 armhf 1:4.4.18-4ubuntu2 [94.2 kB] Get:3 http://ftpmaster.internal/ubuntu jammy/main armhf base-files armhf 12ubuntu1 [63.0 kB] Get:4 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf bsdutils armhf 1:2.36.1-8ubuntu2 [86.0 kB] Get:5 http://ftpmaster.internal/ubuntu jammy/main armhf coreutils armhf 8.32-4ubuntu3 [1302 kB] Get:6 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf debianutils armhf 5.5-1 [76.9 kB] Get:7 http://ftpmaster.internal/ubuntu jammy/main armhf gzip armhf 1.10-4ubuntu2 [94.9 kB] Get:8 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libncurses6 armhf 6.2+20210905-1 [87.4 kB] Get:9 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libncursesw6 armhf 6.2+20210905-1 [118 kB] Get:10 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libtinfo6 armhf 6.2+20210905-1 [88.3 kB] Get:11 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf ncurses-bin armhf 6.2+20210905-1 [172 kB] Get:12 http://ftpmaster.internal/ubuntu jammy/main armhf sed armhf 4.7-1ubuntu2 [185 kB] Get:13 http://ftpmaster.internal/ubuntu jammy/main armhf tar armhf 1.34+dfsg-1build2 [272 kB] Get:14 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf util-linux armhf 2.36.1-8ubuntu2 [1071 kB] Get:15 http://ftpmaster.internal/ubuntu jammy/main armhf libdebconfclient0 armhf 0.256ubuntu4 [5802 B] Get:16 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf base-passwd armhf 3.5.52 [49.1 kB] Get:17 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf ncurses-base all 6.2+20210905-1 [19.9 kB] Get:18 http://ftpmaster.internal/ubuntu jammy/main armhf sysvinit-utils armhf 2.96-7ubuntu2 [20.1 kB] Get:19 http://ftpmaster.internal/ubuntu jammy/main armhf bzip2 armhf 1.0.8-4ubuntu4 [34.1 kB] Get:20 http://ftpmaster.internal/ubuntu jammy/main armhf libbz2-1.0 armhf 1.0.8-4ubuntu4 [31.4 kB] Get:21 http://ftpmaster.internal/ubuntu jammy/main armhf liblz4-1 armhf 1.9.3-2build1 [54.9 kB] Get:22 http://ftpmaster.internal/ubuntu jammy/main armhf liblzma5 armhf 5.2.5-2build1 [87.3 kB] Get:23 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libzstd1 armhf 1.4.8+dfsg-3 [285 kB] Get:24 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libapt-pkg6.0 armhf 2.3.10 [897 kB] Get:25 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libseccomp2 armhf 2.5.1-1ubuntu2 [47.5 kB] Get:26 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf apt armhf 2.3.10 [1380 kB] Get:27 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf mount armhf 2.36.1-8ubuntu2 [122 kB] Get:28 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libattr1 armhf 1:2.5.1-1 [12.2 kB] Get:29 http://ftpmaster.internal/ubuntu jammy/main armhf libaudit-common all 1:3.0-2ubuntu3 [4688 B] Get:30 http://ftpmaster.internal/ubuntu jammy/main armhf libcap-ng0 armhf 0.7.9-2.2build2 [10.1 kB] Get:31 http://ftpmaster.internal/ubuntu jammy/main armhf libaudit1 armhf 1:3.0-2ubuntu3 [43.1 kB] Get:32 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libblkid1 armhf 2.36.1-8ubuntu2 [131 kB] Get:33 http://ftpmaster.internal/ubuntu jammy/main armhf libcap2 armhf 1:2.44-1build2 [15.3 kB] Get:34 http://ftpmaster.internal/ubuntu jammy/main armhf libdb5.3 armhf 5.3.28+dfsg1-0.8ubuntu2 [648 kB] Get:35 http://ftpmaster.internal/ubuntu jammy/main armhf libgmp10 armhf 2:6.2.1+dfsg-1ubuntu3 [207 kB] Get:36 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libgpg-error0 armhf 1.42-3 [60.1 kB] Get:37 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libk5crypto3 armhf 1.18.3-7 [83.1 kB] Get:38 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libkrb5support0 armhf 1.18.3-7 [30.3 kB] Get:39 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libkrb5-3 armhf 1.18.3-7 [330 kB] Get:40 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libgssapi-krb5-2 armhf 1.18.3-7 [120 kB] Get:41 http://ftpmaster.internal/ubuntu jammy/main armhf libkeyutils1 armhf 1.6.1-2ubuntu2 [8936 B] Get:42 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libselinux1 armhf 3.1-3build3 [66.4 kB] Get:43 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libmount1 armhf 2.36.1-8ubuntu2 [146 kB] Get:44 http://ftpmaster.internal/ubuntu jammy/main armhf libpcre3 armhf 2:8.39-13build4 [225 kB] Get:45 http://ftpmaster.internal/ubuntu jammy/main armhf libsemanage-common all 3.1-1ubuntu3 [9606 B] Get:46 http://ftpmaster.internal/ubuntu jammy/main armhf libsemanage1 armhf 3.1-1ubuntu3 [83.9 kB] Get:47 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libsmartcols1 armhf 2.36.1-8ubuntu2 [90.9 kB] Get:48 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libuuid1 armhf 2.36.1-8ubuntu2 [22.7 kB] Get:49 http://ftpmaster.internal/ubuntu jammy/main armhf libnettle8 armhf 3.7.3-1build1 [173 kB] Get:50 http://ftpmaster.internal/ubuntu jammy/main armhf libhogweed6 armhf 3.7.3-1build1 [187 kB] Get:51 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libidn2-0 armhf 2.3.2-2 [67.8 kB] Get:52 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libp11-kit0 armhf 0.24.0-5 [218 kB] Get:53 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libtasn1-6 armhf 4.17.0-2 [36.6 kB] Get:54 http://ftpmaster.internal/ubuntu jammy/main armhf mawk armhf 1.3.4.20200120-2build1 [91.4 kB] Get:55 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf sensible-utils all 0.0.17 [20.1 kB] Get:56 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf ca-certificates all 20211016 [148 kB] Get:57 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libapparmor1 armhf 3.0.3-0ubuntu2 [32.2 kB] Get:58 http://ftpmaster.internal/ubuntu jammy/main armhf libargon2-1 armhf 0~20171227-0.2build22 [20.9 kB] Get:59 http://ftpmaster.internal/ubuntu jammy/main armhf libip4tc2 armhf 1.8.7-1ubuntu3 [17.6 kB] Get:60 http://ftpmaster.internal/ubuntu jammy/main armhf libjson-c5 armhf 0.15-2build3 [28.9 kB] Get:61 http://ftpmaster.internal/ubuntu jammy/main armhf readline-common all 8.1-2build1 [53.6 kB] Get:62 http://ftpmaster.internal/ubuntu jammy/main armhf libreadline8 armhf 8.1-2build1 [128 kB] Get:63 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libsqlite3-0 armhf 3.36.0-2 [571 kB] Get:64 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libgdbm6 armhf 1.21-1 [30.9 kB] Get:65 http://ftpmaster.internal/ubuntu jammy/main armhf xz-utils armhf 5.2.5-2build1 [84.4 kB] Get:66 http://ftpmaster.internal/ubuntu jammy/main armhf libfakeroot armhf 1.25.3-1.1ubuntu3 [26.2 kB] Get:67 http://ftpmaster.internal/ubuntu jammy/main armhf fakeroot armhf 1.25.3-1.1ubuntu3 [62.2 kB] Get:68 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libgdbm-compat4 armhf 1.21-1 [6120 B] Get:69 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libisl23 armhf 0.24-2 [581 kB] Get:70 http://ftpmaster.internal/ubuntu jammy/main armhf libmpfr6 armhf 4.1.0-3build2 [217 kB] Get:71 http://ftpmaster.internal/ubuntu jammy/main armhf libnpth0 armhf 1.6-3build1 [7254 B] Get:72 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf lockfile-progs armhf 0.1.19 [9508 B] Get:73 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf make armhf 4.3-4ubuntu2 [162 kB] Get:74 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf optipng armhf 0.7.7-2 [84.7 kB] Get:75 http://ftpmaster.internal/ubuntu jammy/main armhf patch armhf 2.7.6-7build1 [111 kB] Get:76 http://ftpmaster.internal/ubuntu jammy/main armhf pinentry-curses armhf 1.1.1-1build1 [35.6 kB] Get:77 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libmpc3 armhf 1.2.1-1 [39.5 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 12.5 MB in 1s (15.1 MB/s) (Reading database ... 12985 files and directories 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Updating certificates in /etc/ssl/certs... rehash: warning: skipping ca-certificates.crt,it does not contain exactly one certificate or CRL 7 added, 8 removed; done. Setting up make (4.3-4ubuntu2) ... Setting up libmpfr6:armhf (4.1.0-3build2) ... Setting up optipng (0.7.7-2) ... Setting up libncurses6:armhf (6.2+20210905-1) ... Setting up xz-utils (5.2.5-2build1) ... Setting up libmpc3:armhf (1.2.1-1) ... Setting up lockfile-progs (0.1.19) ... Setting up patch (2.7.6-7build1) ... Setting up libncursesw6:armhf (6.2+20210905-1) ... Setting up mount (2.36.1-8ubuntu2) ... Setting up sensible-utils (0.0.17) ... Setting up libcrypt-dev:armhf (1:4.4.18-4ubuntu2) ... Setting up mawk (1.3.4.20200120-2build1) ... Setting up libisl23:armhf (0.24-2) ... Setting up libjson-c5:armhf (0.15-2build3) ... Setting up readline-common (8.1-2build1) ... Setting up libgdbm6:armhf (1.21-1) ... Setting up pinentry-curses (1.1.1-1build1) ... Setting up libreadline8:armhf (8.1-2build1) ... Setting up libgdbm-compat4:armhf (1.21-1) ... Processing triggers for libc-bin (2.34-0ubuntu3) ... Processing triggers for ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-22305836 armhf jammy-proposed -c chroot:build-PACKAGEBUILD-22305836 --arch=armhf --dist=jammy-proposed --nolog r-cran-qtl_1.50-1.dsc Initiating build PACKAGEBUILD-22305836 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.15.0-159-generic #167-Ubuntu SMP Mon Sep 20 23:06:52 UTC 2021 armv7l sbuild (Debian sbuild) 0.75.0 (21 Mar 2018) on bos02-arm64-049.buildd +==============================================================================+ | r-cran-qtl 1.50-1 (armhf) Tue, 19 Oct 2021 18:05:37 +0000 | +==============================================================================+ Package: r-cran-qtl Version: 1.50-1 Source Version: 1.50-1 Distribution: jammy-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-22305836/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- r-cran-qtl_1.50-1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/r-cran-qtl-hY4tbp/r-cran-qtl-1.50' with '<>' I: NOTICE: Log filtering will replace 'build/r-cran-qtl-hY4tbp' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-yFIQVy/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-yFIQVy/apt_archive ./ InRelease Get:2 copy:/<>/resolver-yFIQVy/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-yFIQVy/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-yFIQVy/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-yFIQVy/apt_archive ./ Packages [430 B] Fetched 1736 B in 0s (51.4 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 652 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-yFIQVy/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [652 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 652 B in 0s (52.6 kB/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12987 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev dpkg-deb: building package 'sbuild-build-depends-r-cran-qtl-dummy' in '/<>/resolver-yFIQVy/apt_archive/sbuild-build-depends-r-cran-qtl-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-r-cran-qtl-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-yFIQVy/apt_archive ./ InRelease Get:2 copy:/<>/resolver-yFIQVy/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-yFIQVy/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-yFIQVy/apt_archive ./ Sources [506 B] Get:5 copy:/<>/resolver-yFIQVy/apt_archive ./ Packages [583 B] Fetched 2052 B in 0s (56.8 kB/s) Reading package lists... Reading package lists... Install r-cran-qtl build dependencies (apt-based resolver) ---------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils dctrl-tools debhelper debugedit dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-11 groff-base icu-devtools intltool-debian libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl libblas-dev libblas3 libbrotli1 libbsd0 libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl libclass-load-xs-perl libcurl3-gnutls libcurl4 libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl libdevel-overloadinfo-perl libdevel-stacktrace-perl libdist-checkconflicts-perl libdw1 libdynaloader-functions-perl libelf1 libencode-locale-perl libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-11-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu67 libio-html-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 libldap-2.5-0 liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1 libmd0 libmodule-implementation-perl libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses5-dev libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libreadline-dev librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libssh-4 libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtk8.6 libtool libtry-tiny-perl libuchardet0 liburi-perl libvariable-magic-perl libwebp6 libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db pkg-config po-debconf r-base-core r-base-dev ucf unzip x11-common xauth xdg-utils zip zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc debtags dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-doc gfortran-11-doc libcoarrays-dev groff liblapack-doc icu-doc liblzma-doc ncurses-doc libscalar-number-perl readline-doc tcl8.6 tk8.6 libtool-doc gcj-jdk libwww-perl libcurl4-gnutls-dev m4-doc apparmor less www-browser libmail-box-perl elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-plain-generic texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo Recommended packages: devscripts cme git-buildpackage curl | wget | lynx bzip2-doc libclass-c3-xs-perl libdevel-lexalias-perl libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libclone-perl libldap-common libdevel-partialdump-perl libpng-tools publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl r-recommended r-doc-html libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils dctrl-tools debhelper debugedit dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-11 groff-base icu-devtools intltool-debian libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl libblas-dev libblas3 libbrotli1 libbsd0 libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl libclass-load-xs-perl libcurl3-gnutls libcurl4 libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl libdevel-overloadinfo-perl libdevel-stacktrace-perl libdist-checkconflicts-perl libdw1 libdynaloader-functions-perl libelf1 libencode-locale-perl libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-11-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu67 libio-html-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 libldap-2.5-0 liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1 libmd0 libmodule-implementation-perl libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses5-dev libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libreadline-dev librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libssh-4 libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtk8.6 libtool libtry-tiny-perl libuchardet0 liburi-perl libvariable-magic-perl libwebp6 libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db pkg-config po-debconf r-base-core r-base-dev sbuild-build-depends-r-cran-qtl-dummy ucf unzip x11-common xauth xdg-utils zip zlib1g-dev 0 upgraded, 170 newly installed, 0 to remove and 0 not upgraded. Need to get 123 MB of archives. After this operation, 334 MB of additional disk space will be used. Get:1 copy:/<>/resolver-yFIQVy/apt_archive ./ sbuild-build-depends-r-cran-qtl-dummy 0.invalid.0 [676 B] Get:2 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf bsdextrautils armhf 2.36.1-8ubuntu2 [80.2 kB] Get:3 http://ftpmaster.internal/ubuntu jammy/main armhf libuchardet0 armhf 0.0.7-1build1 [75.6 kB] Get:4 http://ftpmaster.internal/ubuntu jammy/main armhf groff-base armhf 1.22.4-7 [870 kB] Get:5 http://ftpmaster.internal/ubuntu jammy/main armhf libpipeline1 armhf 1.5.3-1build1 [25.0 kB] Get:6 http://ftpmaster.internal/ubuntu jammy/main armhf man-db armhf 2.9.4-2build1 [1143 kB] Get:7 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libmd0 armhf 1.0.4-1 [22.5 kB] Get:8 http://ftpmaster.internal/ubuntu jammy/main armhf libbsd0 armhf 0.11.3-1ubuntu3 [39.6 kB] Get:9 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libelf1 armhf 0.185-2 [43.1 kB] Get:10 http://ftpmaster.internal/ubuntu jammy/main armhf libexpat1 armhf 2.4.1-2 [64.8 kB] Get:11 http://ftpmaster.internal/ubuntu jammy/main armhf libfribidi0 armhf 1.0.8-2ubuntu2 [23.5 kB] Get:12 http://ftpmaster.internal/ubuntu jammy/main armhf libglib2.0-0 armhf 2.68.4-1ubuntu1 [1287 kB] Get:13 http://ftpmaster.internal/ubuntu jammy/main armhf libicu67 armhf 67.1-7ubuntu1 [9788 kB] Get:14 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libxml2 armhf 2.9.12+dfsg-5 [598 kB] Get:15 http://ftpmaster.internal/ubuntu jammy/main armhf ucf all 3.0043 [56.1 kB] Get:16 http://ftpmaster.internal/ubuntu jammy/main armhf libmagic-mgc armhf 1:5.39-3build1 [236 kB] Get:17 http://ftpmaster.internal/ubuntu jammy/main armhf libmagic1 armhf 1:5.39-3build1 [80.4 kB] Get:18 http://ftpmaster.internal/ubuntu jammy/main armhf file armhf 1:5.39-3build1 [23.6 kB] Get:19 http://ftpmaster.internal/ubuntu jammy/main armhf gettext-base armhf 0.21-4ubuntu3 [36.0 kB] Get:20 http://ftpmaster.internal/ubuntu jammy/main armhf libpsl5 armhf 0.21.0-1.2build1 [56.1 kB] Get:21 http://ftpmaster.internal/ubuntu jammy/main armhf libxau6 armhf 1:1.0.9-1build4 [6628 B] Get:22 http://ftpmaster.internal/ubuntu jammy/main armhf libxdmcp6 armhf 1:1.1.3-0ubuntu4 [9552 B] Get:23 http://ftpmaster.internal/ubuntu jammy/main armhf libxcb1 armhf 1.14-3ubuntu2 [46.2 kB] Get:24 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libx11-data all 2:1.7.2-2 [123 kB] Get:25 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libx11-6 armhf 2:1.7.2-2 [601 kB] Get:26 http://ftpmaster.internal/ubuntu jammy/main armhf libxext6 armhf 2:1.3.4-0ubuntu4 [25.8 kB] Get:27 http://ftpmaster.internal/ubuntu jammy/main armhf libxmuu1 armhf 2:1.1.3-0ubuntu2 [9270 B] Get:28 http://ftpmaster.internal/ubuntu jammy/main armhf xauth armhf 1:1.1-1build1 [23.9 kB] Get:29 http://ftpmaster.internal/ubuntu jammy/main armhf libsigsegv2 armhf 2.13-1ubuntu2 [13.7 kB] Get:30 http://ftpmaster.internal/ubuntu jammy/main armhf m4 armhf 1.4.18-5ubuntu1 [192 kB] Get:31 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf autoconf all 2.71-2 [338 kB] Get:32 http://ftpmaster.internal/ubuntu jammy/main armhf autotools-dev all 20180224.1+nmu1 [39.4 kB] Get:33 http://ftpmaster.internal/ubuntu jammy/main armhf automake all 1:1.16.4-2 [557 kB] Get:34 http://ftpmaster.internal/ubuntu jammy/main armhf autopoint all 0.21-4ubuntu3 [422 kB] Get:35 http://ftpmaster.internal/ubuntu jammy/main armhf dctrl-tools armhf 2.24-3build1 [57.4 kB] Get:36 http://ftpmaster.internal/ubuntu jammy/main armhf libdebhelper-perl all 13.3.4ubuntu2 [62.5 kB] Get:37 http://ftpmaster.internal/ubuntu jammy/main armhf libtool all 2.4.6-15build1 [164 kB] Get:38 http://ftpmaster.internal/ubuntu jammy/main armhf dh-autoreconf all 20 [16.1 kB] Get:39 http://ftpmaster.internal/ubuntu jammy/main armhf libarchive-zip-perl all 1.68-1 [90.2 kB] Get:40 http://ftpmaster.internal/ubuntu jammy/main armhf libsub-override-perl all 0.09-2 [9532 B] Get:41 http://ftpmaster.internal/ubuntu jammy/main armhf libfile-stripnondeterminism-perl all 1.12.0-1 [17.5 kB] Get:42 http://ftpmaster.internal/ubuntu jammy/main armhf dh-strip-nondeterminism all 1.12.0-1 [5228 B] Get:43 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libdw1 armhf 0.185-2 [225 kB] Get:44 http://ftpmaster.internal/ubuntu jammy/main armhf debugedit armhf 1:5.0-0ubuntu2 [43.9 kB] Get:45 http://ftpmaster.internal/ubuntu jammy/main armhf dwz armhf 0.14-1build1 [99.2 kB] Get:46 http://ftpmaster.internal/ubuntu jammy/main armhf gettext armhf 0.21-4ubuntu3 [755 kB] Get:47 http://ftpmaster.internal/ubuntu jammy/main armhf intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:48 http://ftpmaster.internal/ubuntu jammy/main armhf po-debconf all 1.0.21+nmu1 [233 kB] Get:49 http://ftpmaster.internal/ubuntu jammy/main armhf debhelper all 13.3.4ubuntu2 [921 kB] Get:50 http://ftpmaster.internal/ubuntu jammy/main armhf zip armhf 3.0-12build1 [166 kB] Get:51 http://ftpmaster.internal/ubuntu jammy/main armhf unzip armhf 6.0-26ubuntu2 [162 kB] Get:52 http://ftpmaster.internal/ubuntu jammy/main armhf libpaper1 armhf 1.1.28build1 [12.9 kB] Get:53 http://ftpmaster.internal/ubuntu jammy/main armhf libpaper-utils armhf 1.1.28build1 [8238 B] Get:54 http://ftpmaster.internal/ubuntu jammy/main armhf xdg-utils all 1.1.3-2ubuntu2 [61.5 kB] Get:55 http://ftpmaster.internal/ubuntu jammy/main armhf libblas3 armhf 3.9.0-3ubuntu3 [113 kB] Get:56 http://ftpmaster.internal/ubuntu jammy/main armhf libbrotli1 armhf 1.0.9-2build4 [306 kB] Get:57 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libfreetype6 armhf 2.11.0+dfsg-1 [323 kB] Get:58 http://ftpmaster.internal/ubuntu jammy/main armhf fonts-dejavu-core all 2.37-2build1 [1041 kB] Get:59 http://ftpmaster.internal/ubuntu jammy/main armhf fontconfig-config all 2.13.1-4.2ubuntu4 [29.1 kB] Get:60 http://ftpmaster.internal/ubuntu jammy/main armhf libfontconfig1 armhf 2.13.1-4.2ubuntu4 [109 kB] Get:61 http://ftpmaster.internal/ubuntu jammy/main armhf libpixman-1-0 armhf 0.40.0-1build3 [177 kB] Get:62 http://ftpmaster.internal/ubuntu jammy/main armhf libxcb-render0 armhf 1.14-3ubuntu2 [15.3 kB] Get:63 http://ftpmaster.internal/ubuntu jammy/main armhf libxcb-shm0 armhf 1.14-3ubuntu2 [5818 B] Get:64 http://ftpmaster.internal/ubuntu jammy/main armhf libxrender1 armhf 1:0.9.10-1build3 [16.3 kB] Get:65 http://ftpmaster.internal/ubuntu jammy/main armhf libcairo2 armhf 1.16.0-5ubuntu2 [549 kB] Get:66 http://ftpmaster.internal/ubuntu jammy/main armhf libsasl2-modules-db armhf 2.1.27+dfsg-2.1build1 [13.2 kB] Get:67 http://ftpmaster.internal/ubuntu jammy/main armhf libsasl2-2 armhf 2.1.27+dfsg-2.1build1 [42.4 kB] Get:68 http://ftpmaster.internal/ubuntu jammy/main armhf libldap-2.5-0 armhf 2.5.6+dfsg-1~exp1ubuntu1 [162 kB] Get:69 http://ftpmaster.internal/ubuntu jammy/main armhf libnghttp2-14 armhf 1.43.0-1build1 [70.0 kB] Get:70 http://ftpmaster.internal/ubuntu jammy/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2build3 [53.0 kB] Get:71 http://ftpmaster.internal/ubuntu jammy/main armhf libssh-4 armhf 0.9.6-1 [163 kB] Get:72 http://ftpmaster.internal/ubuntu jammy/main armhf libcurl4 armhf 7.74.0-1.3ubuntu2 [238 kB] Get:73 http://ftpmaster.internal/ubuntu jammy/main armhf libjpeg-turbo8 armhf 2.0.6-0ubuntu3 [97.7 kB] Get:74 http://ftpmaster.internal/ubuntu jammy/main armhf libjpeg8 armhf 8c-2ubuntu8 [2202 B] Get:75 http://ftpmaster.internal/ubuntu jammy/main armhf libgfortran5 armhf 11.2.0-7ubuntu2 [288 kB] Get:76 http://ftpmaster.internal/ubuntu jammy/main armhf liblapack3 armhf 3.9.0-3ubuntu3 [1891 kB] Get:77 http://ftpmaster.internal/ubuntu jammy/main armhf fontconfig armhf 2.13.1-4.2ubuntu4 [182 kB] Get:78 http://ftpmaster.internal/ubuntu jammy/main armhf libgraphite2-3 armhf 1.3.14-1build1 [65.2 kB] Get:79 http://ftpmaster.internal/ubuntu jammy/main armhf libharfbuzz0b armhf 2.7.4-1ubuntu2 [335 kB] Get:80 http://ftpmaster.internal/ubuntu jammy/main armhf libthai-data all 0.1.28-4.1 [159 kB] Get:81 http://ftpmaster.internal/ubuntu jammy/main armhf libdatrie1 armhf 0.2.13-1ubuntu3 [16.4 kB] Get:82 http://ftpmaster.internal/ubuntu jammy/main armhf libthai0 armhf 0.1.28-4.1 [15.8 kB] Get:83 http://ftpmaster.internal/ubuntu jammy/main armhf libpango-1.0-0 armhf 1.48.10+ds1-1 [176 kB] Get:84 http://ftpmaster.internal/ubuntu jammy/main armhf libpangoft2-1.0-0 armhf 1.48.10+ds1-1 [44.4 kB] Get:85 http://ftpmaster.internal/ubuntu jammy/main armhf libpangocairo-1.0-0 armhf 1.48.10+ds1-1 [33.0 kB] Get:86 http://ftpmaster.internal/ubuntu jammy/main armhf libtcl8.6 armhf 8.6.11+dfsg-1build1 [897 kB] Get:87 http://ftpmaster.internal/ubuntu jammy/main armhf libdeflate0 armhf 1.7-2ubuntu2 [46.1 kB] Get:88 http://ftpmaster.internal/ubuntu jammy/main armhf libjbig0 armhf 2.1-3.1build2 [25.1 kB] Get:89 http://ftpmaster.internal/ubuntu jammy/main armhf libwebp6 armhf 0.6.1-2.1build1 [163 kB] Get:90 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libtiff5 armhf 4.3.0-2 [165 kB] Get:91 http://ftpmaster.internal/ubuntu jammy/main armhf libxft2 armhf 2.3.3-0ubuntu4 [34.8 kB] Get:92 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf x11-common all 1:7.7+23ubuntu1 [23.5 kB] Get:93 http://ftpmaster.internal/ubuntu jammy/main armhf libxss1 armhf 1:1.2.3-1build1 [7662 B] Get:94 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libtk8.6 armhf 8.6.11.1-1 [688 kB] Get:95 http://ftpmaster.internal/ubuntu jammy/main armhf libice6 armhf 2:1.0.10-1build1 [36.4 kB] Get:96 http://ftpmaster.internal/ubuntu jammy/main armhf libsm6 armhf 2:1.2.3-1build1 [15.3 kB] Get:97 http://ftpmaster.internal/ubuntu jammy/main armhf libxt6 armhf 1:1.2.0-1build1 [148 kB] Get:98 http://ftpmaster.internal/ubuntu jammy-proposed/universe armhf r-base-core armhf 4.1.1-2 [25.6 MB] Get:99 http://ftpmaster.internal/ubuntu jammy/main armhf libgfortran-11-dev armhf 11.2.0-7ubuntu2 [342 kB] Get:100 http://ftpmaster.internal/ubuntu jammy/main armhf gfortran-11 armhf 11.2.0-7ubuntu2 [49.7 MB] Get:101 http://ftpmaster.internal/ubuntu jammy/main armhf gfortran armhf 4:11.2.0-1ubuntu1 [1172 B] Get:102 http://ftpmaster.internal/ubuntu jammy/main armhf libblas-dev armhf 3.9.0-3ubuntu3 [120 kB] Get:103 http://ftpmaster.internal/ubuntu jammy/main armhf liblapack-dev armhf 3.9.0-3ubuntu3 [1960 kB] Get:104 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libncurses-dev armhf 6.2+20210905-1 [342 kB] Get:105 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libncurses5-dev armhf 6.2+20210905-1 [792 B] Get:106 http://ftpmaster.internal/ubuntu jammy/main armhf libreadline-dev armhf 8.1-2build1 [151 kB] Get:107 http://ftpmaster.internal/ubuntu jammy/main armhf libjpeg-turbo8-dev armhf 2.0.6-0ubuntu3 [213 kB] Get:108 http://ftpmaster.internal/ubuntu jammy/main armhf libjpeg8-dev armhf 8c-2ubuntu8 [1554 B] Get:109 http://ftpmaster.internal/ubuntu jammy/main armhf libjpeg-dev armhf 8c-2ubuntu8 [1554 B] Get:110 http://ftpmaster.internal/ubuntu jammy/main armhf libpcre2-16-0 armhf 10.37-0ubuntu2 [172 kB] Get:111 http://ftpmaster.internal/ubuntu jammy/main armhf libpcre2-32-0 armhf 10.37-0ubuntu2 [162 kB] Get:112 http://ftpmaster.internal/ubuntu jammy/main armhf libpcre2-posix3 armhf 10.37-0ubuntu2 [5518 B] Get:113 http://ftpmaster.internal/ubuntu jammy/main armhf libpcre2-dev armhf 10.37-0ubuntu2 [643 kB] Get:114 http://ftpmaster.internal/ubuntu jammy/main armhf libpcre16-3 armhf 2:8.39-13build4 [143 kB] Get:115 http://ftpmaster.internal/ubuntu jammy/main armhf libpcre32-3 armhf 2:8.39-13build4 [135 kB] Get:116 http://ftpmaster.internal/ubuntu jammy/main armhf libpcrecpp0v5 armhf 2:8.39-13build4 [14.0 kB] Get:117 http://ftpmaster.internal/ubuntu jammy/main armhf libpcre3-dev armhf 2:8.39-13build4 [514 kB] Get:118 http://ftpmaster.internal/ubuntu jammy/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2ubuntu7 [157 kB] Get:119 http://ftpmaster.internal/ubuntu jammy/main armhf libpng-dev armhf 1.6.37-3build4 [176 kB] Get:120 http://ftpmaster.internal/ubuntu jammy/main armhf libbz2-dev armhf 1.0.8-4ubuntu4 [29.8 kB] Get:121 http://ftpmaster.internal/ubuntu jammy/main armhf liblzma-dev armhf 5.2.5-2build1 [149 kB] Get:122 http://ftpmaster.internal/ubuntu jammy/main armhf icu-devtools armhf 67.1-7ubuntu1 [183 kB] Get:123 http://ftpmaster.internal/ubuntu jammy/main armhf libicu-dev armhf 67.1-7ubuntu1 [10.8 MB] Get:124 http://ftpmaster.internal/ubuntu jammy/main armhf pkg-config armhf 0.29.2-1ubuntu2 [46.0 kB] Get:125 http://ftpmaster.internal/ubuntu jammy-proposed/universe armhf r-base-dev all 4.1.1-2 [4304 B] Get:126 http://ftpmaster.internal/ubuntu jammy/main armhf libfile-which-perl all 1.23-1 [13.8 kB] Get:127 http://ftpmaster.internal/ubuntu jammy/universe armhf libswitch-perl all 2.17-2.1 [18.3 kB] Get:128 http://ftpmaster.internal/ubuntu jammy/main armhf libencode-locale-perl all 1.05-1.1 [11.8 kB] Get:129 http://ftpmaster.internal/ubuntu jammy/main armhf libtimedate-perl all 2.3300-2 [34.0 kB] Get:130 http://ftpmaster.internal/ubuntu jammy/main armhf libhttp-date-perl all 6.05-1 [9920 B] Get:131 http://ftpmaster.internal/ubuntu jammy/main armhf libio-html-perl all 1.004-2 [15.4 kB] Get:132 http://ftpmaster.internal/ubuntu jammy/main armhf liblwp-mediatypes-perl all 6.04-1 [19.5 kB] Get:133 http://ftpmaster.internal/ubuntu jammy/main armhf liburi-perl all 5.08-1 [77.4 kB] Get:134 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libhttp-message-perl all 6.33-1 [76.8 kB] Get:135 http://ftpmaster.internal/ubuntu jammy/main armhf libparams-util-perl armhf 1.102-1build2 [21.5 kB] Get:136 http://ftpmaster.internal/ubuntu jammy/main armhf libsub-install-perl all 0.928-1.1 [9972 B] Get:137 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libdata-optlist-perl all 0.112-1 [11.0 kB] Get:138 http://ftpmaster.internal/ubuntu jammy/main armhf libb-hooks-op-check-perl armhf 0.22-1build4 [10.2 kB] Get:139 http://ftpmaster.internal/ubuntu jammy/main armhf libdynaloader-functions-perl all 0.003-1.1 [12.1 kB] Get:140 http://ftpmaster.internal/ubuntu jammy/main armhf libdevel-callchecker-perl armhf 0.008-1ubuntu3 [14.6 kB] Get:141 http://ftpmaster.internal/ubuntu jammy/main armhf libparams-classify-perl armhf 0.015-1build4 [20.5 kB] Get:142 http://ftpmaster.internal/ubuntu jammy/main armhf libmodule-runtime-perl all 0.016-1 [16.2 kB] Get:143 http://ftpmaster.internal/ubuntu jammy/main armhf libtry-tiny-perl all 0.30-1 [20.5 kB] Get:144 http://ftpmaster.internal/ubuntu jammy/main armhf libmodule-implementation-perl all 0.09-1.1 [11.6 kB] Get:145 http://ftpmaster.internal/ubuntu jammy/main armhf libpackage-stash-perl all 0.39-1 [19.1 kB] Get:146 http://ftpmaster.internal/ubuntu jammy/universe armhf libclass-load-perl all 0.25-1 [13.5 kB] Get:147 http://ftpmaster.internal/ubuntu jammy/universe armhf libclass-load-xs-perl armhf 0.10-1build6 [13.0 kB] Get:148 http://ftpmaster.internal/ubuntu jammy/main armhf libsub-exporter-progressive-perl all 0.001013-1 [6784 B] Get:149 http://ftpmaster.internal/ubuntu jammy/universe armhf libdevel-globaldestruction-perl all 0.14-1.1 [6916 B] Get:150 http://ftpmaster.internal/ubuntu jammy/universe armhf libalgorithm-c3-perl all 0.11-1 [11.0 kB] Get:151 http://ftpmaster.internal/ubuntu jammy/universe armhf libclass-c3-perl all 0.35-1 [19.0 kB] Get:152 http://ftpmaster.internal/ubuntu jammy/universe armhf libmro-compat-perl all 0.13-1 [11.2 kB] Get:153 http://ftpmaster.internal/ubuntu jammy-proposed/universe armhf libdevel-overloadinfo-perl all 0.007-1 [7422 B] Get:154 http://ftpmaster.internal/ubuntu jammy/main armhf libdevel-stacktrace-perl all 2.0400-1 [22.7 kB] Get:155 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libsub-exporter-perl all 0.988-1 [50.6 kB] Get:156 http://ftpmaster.internal/ubuntu jammy/universe armhf libeval-closure-perl all 0.14-1 [10.3 kB] Get:157 http://ftpmaster.internal/ubuntu jammy/universe armhf libdist-checkconflicts-perl all 0.11-1.1 [9632 B] Get:158 http://ftpmaster.internal/ubuntu jammy/universe armhf libmodule-runtime-conflicts-perl all 0.003-1.1 [6836 B] Get:159 http://ftpmaster.internal/ubuntu jammy/main armhf libsub-name-perl armhf 0.26-1build2 [11.0 kB] Get:160 http://ftpmaster.internal/ubuntu jammy/universe armhf libpackage-deprecationmanager-perl all 0.17-1.1 [15.5 kB] Get:161 http://ftpmaster.internal/ubuntu jammy/main armhf libpackage-stash-xs-perl armhf 0.29-1build4 [17.7 kB] Get:162 http://ftpmaster.internal/ubuntu jammy/universe armhf libmoose-perl armhf 2.2014-2 [743 kB] Get:163 http://ftpmaster.internal/ubuntu jammy/main armhf libvariable-magic-perl armhf 0.62-1build4 [33.0 kB] Get:164 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libb-hooks-endofscope-perl all 0.25-1 [17.8 kB] Get:165 http://ftpmaster.internal/ubuntu jammy/main armhf libsub-identify-perl armhf 0.14-1build4 [10.2 kB] Get:166 http://ftpmaster.internal/ubuntu jammy/main armhf libnamespace-clean-perl all 0.27-1 [13.6 kB] Get:167 http://ftpmaster.internal/ubuntu jammy/main armhf libcurl3-gnutls armhf 7.74.0-1.3ubuntu2 [234 kB] Get:168 http://ftpmaster.internal/ubuntu jammy/universe armhf libwww-curl-perl armhf 4.17-7build1 [49.7 kB] Get:169 http://ftpmaster.internal/ubuntu jammy/universe armhf libwww-curl-simple-perl all 0.100191-2 [10.9 kB] Get:170 http://ftpmaster.internal/ubuntu jammy/universe armhf dh-r all 20210218ubuntu1 [36.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 123 MB in 7s (17.0 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 12987 files and directories currently installed.) Preparing to unpack .../000-bsdextrautils_2.36.1-8ubuntu2_armhf.deb ... Unpacking bsdextrautils (2.36.1-8ubuntu2) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../001-libuchardet0_0.0.7-1build1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.7-1build1) ... Selecting previously unselected package groff-base. Preparing to unpack .../002-groff-base_1.22.4-7_armhf.deb ... Unpacking groff-base (1.22.4-7) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../003-libpipeline1_1.5.3-1build1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.3-1build1) ... Selecting previously unselected package man-db. Preparing to unpack .../004-man-db_2.9.4-2build1_armhf.deb ... Unpacking man-db (2.9.4-2build1) ... Selecting previously unselected package libmd0:armhf. Preparing to unpack .../005-libmd0_1.0.4-1_armhf.deb ... Unpacking libmd0:armhf (1.0.4-1) ... 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Setting up libxau6:armhf (1:1.0.9-1build4) ... Setting up libncurses-dev:armhf (6.2+20210905-1) ... Setting up libpsl5:armhf (0.21.0-1.2build1) ... Setting up bsdextrautils (2.36.1-8ubuntu2) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libpcre16-3:armhf (2:8.39-13build4) ... Setting up libicu67:armhf (67.1-7ubuntu1) ... Setting up libdynaloader-functions-perl (0.003-1.1) ... Setting up libdatrie1:armhf (0.2.13-1ubuntu3) ... Setting up libmagic-mgc (1:5.39-3build1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libsub-identify-perl (0.14-1build4) ... Setting up libglib2.0-0:armhf (2.68.4-1ubuntu1) ... No schema files found: doing nothing. Setting up unzip (6.0-26ubuntu2) ... Setting up libdebhelper-perl (13.3.4ubuntu2) ... Setting up libbrotli1:armhf (1.0.9-2build4) ... Setting up liblwp-mediatypes-perl (6.04-1) ... Setting up x11-common (1:7.7+23ubuntu1) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libtry-tiny-perl (0.30-1) ... Setting up libnghttp2-14:armhf (1.43.0-1build1) ... Setting up libmagic1:armhf (1:5.39-3build1) ... Setting up libdeflate0:armhf (1.7-2ubuntu2) ... Setting up gettext-base (0.21-4ubuntu3) ... Setting up libencode-locale-perl (1.05-1.1) ... Setting up file (1:5.39-3build1) ... Setting up libreadline-dev:armhf (8.1-2build1) ... Setting up libjbig0:armhf (2.1-3.1build2) ... Setting up libpcre2-16-0:armhf (10.37-0ubuntu2) ... Setting up libsub-install-perl (0.928-1.1) ... Setting up libsasl2-modules-db:armhf (2.1.27+dfsg-2.1build1) ... Setting up zip (3.0-12build1) ... Setting up libpackage-stash-xs-perl (0.29-1build4) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libpcre2-32-0:armhf (10.37-0ubuntu2) ... Setting up libblas3:armhf (3.9.0-3ubuntu3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up libalgorithm-c3-perl (0.11-1) ... Setting up libswitch-perl (2.17-2.1) ... Setting up libfreetype6:armhf (2.11.0+dfsg-1) ... Setting up libx11-data (2:1.7.2-2) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2build3) ... Setting up libsigsegv2:armhf (2.13-1ubuntu2) ... Setting up libfribidi0:armhf (1.0.8-2ubuntu2) ... Setting up libpcre32-3:armhf (2:8.39-13build4) ... Setting up libvariable-magic-perl (0.62-1build4) ... Setting up libio-html-perl (1.004-2) ... Setting up libtcl8.6:armhf (8.6.11+dfsg-1build1) ... Setting up autopoint (0.21-4ubuntu3) ... Setting up libwebp6:armhf (0.6.1-2.1build1) ... Setting up libb-hooks-op-check-perl (0.22-1build4) ... Setting up icu-devtools (67.1-7ubuntu1) ... Setting up pkg-config (0.29.2-1ubuntu2) ... Setting up fonts-dejavu-core (2.37-2build1) ... Setting up ucf (3.0043) ... Setting up libjpeg-turbo8:armhf (2.0.6-0ubuntu3) ... Setting up libparams-util-perl (1.102-1build2) ... Setting up libsasl2-2:armhf (2.1.27+dfsg-2.1build1) ... Setting up libssh-4:armhf (0.9.6-1) ... Setting up libgfortran5:armhf (11.2.0-7ubuntu2) ... Setting up libsub-exporter-progressive-perl (0.001013-1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up liblzma-dev:armhf (5.2.5-2build1) ... Setting up libsub-name-perl (0.26-1build2) ... Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-2ubuntu7) ... Setting up libpcre2-posix3:armhf (10.37-0ubuntu2) ... Setting up libmd0:armhf (1.0.4-1) ... Setting up libuchardet0:armhf (0.0.7-1build1) ... Setting up libncurses5-dev:armhf (6.2+20210905-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libharfbuzz0b:armhf (2.7.4-1ubuntu2) ... Setting up libthai-data (0.1.28-4.1) ... Setting up libdevel-globaldestruction-perl (0.14-1.1) ... Setting up libdevel-stacktrace-perl (2.0400-1) ... Setting up libbsd0:armhf (0.11.3-1ubuntu3) ... Setting up libelf1:armhf (0.185-2) ... Setting up libicu-dev:armhf (67.1-7ubuntu1) ... Setting up libxml2:armhf (2.9.12+dfsg-5) ... Setting up xdg-utils (1.1.3-2ubuntu2) ... Setting up liburi-perl (5.08-1) ... Setting up libblas-dev:armhf (3.9.0-3ubuntu3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode Setting up dctrl-tools (2.24-3build1) ... Setting up libbz2-dev:armhf (1.0.8-4ubuntu4) ... Setting up libjpeg8:armhf (8c-2ubuntu8) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up libpaper1:armhf (1.1.28build1) ... Creating config file /etc/papersize with new version Setting up libice6:armhf (2:1.0.10-1build1) ... Setting up libhttp-date-perl (6.05-1) ... Setting up libdw1:armhf (0.185-2) ... Setting up libjpeg-turbo8-dev:armhf (2.0.6-0ubuntu3) ... Setting up libxdmcp6:armhf (1:1.1.3-0ubuntu4) ... Setting up liblapack3:armhf (3.9.0-3ubuntu3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up libxcb1:armhf (1.14-3ubuntu2) ... Setting up gettext (0.21-4ubuntu3) ... Setting up libpcre2-dev:armhf (10.37-0ubuntu2) ... Setting up libtool (2.4.6-15build1) ... Setting up libxcb-render0:armhf (1.14-3ubuntu2) ... Setting up libpcre3-dev:armhf (2:8.39-13build4) ... Setting up libgfortran-11-dev:armhf (11.2.0-7ubuntu2) ... Setting up fontconfig-config (2.13.1-4.2ubuntu4) ... Setting up libpng-dev:armhf (1.6.37-3build4) ... Setting up m4 (1.4.18-5ubuntu1) ... Setting up libxcb-shm0:armhf (1.14-3ubuntu2) ... Setting up libpaper-utils (1.1.28build1) ... Setting up libclass-c3-perl (0.35-1) ... Setting up libdevel-callchecker-perl (0.008-1ubuntu3) ... Setting up libldap-2.5-0:armhf (2.5.6+dfsg-1~exp1ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libthai0:armhf (0.1.28-4.1) ... Setting up liblapack-dev:armhf (3.9.0-3ubuntu3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode Setting up libdata-optlist-perl (0.112-1) ... Setting up gfortran-11 (11.2.0-7ubuntu2) ... Setting up autoconf (2.71-2) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.14-1build1) ... Setting up groff-base (1.22.4-7) ... Setting up debugedit (1:5.0-0ubuntu2) ... Setting up libcurl4:armhf (7.74.0-1.3ubuntu2) ... Setting up libx11-6:armhf (2:1.7.2-2) ... Setting up libtiff5:armhf (4.3.0-2) ... Setting up libfontconfig1:armhf (2.13.1-4.2ubuntu4) ... Setting up libmro-compat-perl (0.13-1) ... Setting up libjpeg8-dev:armhf (8c-2ubuntu8) ... Setting up libsm6:armhf (2:1.2.3-1build1) ... Setting up libxmuu1:armhf (2:1.1.3-0ubuntu2) ... Setting up libsub-exporter-perl (0.988-1) ... Setting up libhttp-message-perl (6.33-1) ... Setting up libeval-closure-perl (0.14-1) ... Setting up automake (1:1.16.4-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up fontconfig (2.13.1-4.2ubuntu4) ... Regenerating fonts cache... done. Setting up libxrender1:armhf (1:0.9.10-1build3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libparams-classify-perl (0.015-1build4) ... Setting up libpango-1.0-0:armhf (1.48.10+ds1-1) ... Setting up libjpeg-dev:armhf (8c-2ubuntu8) ... Setting up libxext6:armhf (2:1.3.4-0ubuntu4) ... Setting up libcurl3-gnutls:armhf (7.74.0-1.3ubuntu2) ... Setting up man-db (2.9.4-2build1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up gfortran (4:11.2.0-1ubuntu1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:armhf (1.16.0-5ubuntu2) ... Setting up dh-autoreconf (20) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libdist-checkconflicts-perl (0.11-1.1) ... Setting up libxt6:armhf (1:1.2.0-1build1) ... Setting up xauth (1:1.1-1build1) ... Setting up libxss1:armhf (1:1.2.3-1build1) ... Setting up libpangoft2-1.0-0:armhf (1.48.10+ds1-1) ... Setting up libpangocairo-1.0-0:armhf (1.48.10+ds1-1) ... Setting up libxft2:armhf (2.3.3-0ubuntu4) ... Setting up libmodule-implementation-perl (0.09-1.1) ... Setting up libpackage-stash-perl (0.39-1) ... Setting up libtk8.6:armhf (8.6.11.1-1) ... Setting up libwww-curl-perl (4.17-7build1) ... Setting up debhelper (13.3.4ubuntu2) ... Setting up libmodule-runtime-conflicts-perl (0.003-1.1) ... Setting up libclass-load-perl (0.25-1) ... Setting up r-base-core (4.1.1-2) ... Creating config file /etc/R/Renviron with new version Setting up libpackage-deprecationmanager-perl (0.17-1.1) ... Setting up libdevel-overloadinfo-perl (0.007-1) ... Setting up libclass-load-xs-perl (0.10-1build6) ... Setting up libb-hooks-endofscope-perl (0.25-1) ... Setting up r-base-dev (4.1.1-2) ... Setting up libmoose-perl (2.2014-2) ... Setting up libnamespace-clean-perl (0.27-1) ... Setting up libwww-curl-simple-perl (0.100191-2) ... Setting up dh-r (20210218ubuntu1) ... Setting up sbuild-build-depends-r-cran-qtl-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.34-0ubuntu3) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.15.0-159-generic arm64 (armv7l) Toolchain package versions: binutils_2.37-7ubuntu1 dpkg-dev_1.20.9ubuntu2 g++-11_11.2.0-7ubuntu2 gcc-11_11.2.0-7ubuntu2 libc6-dev_2.34-0ubuntu3 libstdc++-11-dev_11.2.0-7ubuntu2 libstdc++6_11.2.0-7ubuntu2 linux-libc-dev_5.13.0-19.19 Package versions: adduser_3.118ubuntu5 advancecomp_2.1-2.1ubuntu1 apt_2.3.10 autoconf_2.71-2 automake_1:1.16.4-2 autopoint_0.21-4ubuntu3 autotools-dev_20180224.1+nmu1 base-files_12ubuntu1 base-passwd_3.5.52 bash_5.1-3ubuntu2 binutils_2.37-7ubuntu1 binutils-arm-linux-gnueabihf_2.37-7ubuntu1 binutils-common_2.37-7ubuntu1 bsdextrautils_2.36.1-8ubuntu2 bsdutils_1:2.36.1-8ubuntu2 build-essential_12.9ubuntu2 bzip2_1.0.8-4ubuntu4 ca-certificates_20211016 coreutils_8.32-4ubuntu3 cpp_4:11.2.0-1ubuntu1 cpp-11_11.2.0-7ubuntu2 dash_0.5.11+git20210120+802ebd4-1build1 dctrl-tools_2.24-3build1 debconf_1.5.77 debhelper_13.3.4ubuntu2 debianutils_5.5-1 debugedit_1:5.0-0ubuntu2 dh-autoreconf_20 dh-r_20210218ubuntu1 dh-strip-nondeterminism_1.12.0-1 diffutils_1:3.8-0ubuntu1 dpkg_1.20.9ubuntu2 dpkg-dev_1.20.9ubuntu2 dwz_0.14-1build1 e2fsprogs_1.46.3-1ubuntu3 fakeroot_1.25.3-1.1ubuntu3 file_1:5.39-3build1 findutils_4.8.0-1ubuntu2 fontconfig_2.13.1-4.2ubuntu4 fontconfig-config_2.13.1-4.2ubuntu4 fonts-dejavu-core_2.37-2build1 g++_4:11.2.0-1ubuntu1 g++-11_11.2.0-7ubuntu2 gcc_4:11.2.0-1ubuntu1 gcc-11_11.2.0-7ubuntu2 gcc-11-base_11.2.0-7ubuntu2 gettext_0.21-4ubuntu3 gettext-base_0.21-4ubuntu3 gfortran_4:11.2.0-1ubuntu1 gfortran-11_11.2.0-7ubuntu2 gpg_2.2.20-1ubuntu4 gpg-agent_2.2.20-1ubuntu4 gpgconf_2.2.20-1ubuntu4 gpgv_2.2.20-1ubuntu4 grep_3.7-0ubuntu1 groff-base_1.22.4-7 gzip_1.10-4ubuntu2 hostname_3.23ubuntu1 icu-devtools_67.1-7ubuntu1 init_1.60build1 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po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3 procps_2:3.3.17-5ubuntu3 r-base-core_4.1.1-2 r-base-dev_4.1.1-2 readline-common_8.1-2build1 rpcsvc-proto_1.4.2-0ubuntu5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-cran-qtl-dummy_0.invalid.0 sed_4.7-1ubuntu2 sensible-utils_0.0.17 systemd_248.3-1ubuntu8 systemd-sysv_248.3-1ubuntu8 systemd-timesyncd_248.3-1ubuntu8 sysvinit-utils_2.96-7ubuntu2 tar_1.34+dfsg-1build2 tzdata_2021a-2ubuntu1 ubuntu-keyring_2021.03.26 ucf_3.0043 unzip_6.0-26ubuntu2 usrmerge_25ubuntu1 util-linux_2.36.1-8ubuntu2 x11-common_1:7.7+23ubuntu1 xauth_1:1.1-1build1 xdg-utils_1.1.3-2ubuntu2 xz-utils_5.2.5-2build1 zip_3.0-12build1 zlib1g_1:1.2.11.dfsg-2ubuntu7 zlib1g-dev_1:1.2.11.dfsg-2ubuntu7 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Fri Oct 15 11:14:46 2021 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./r-cran-qtl_1.50-1.dsc dpkg-source: info: extracting r-cran-qtl in /<> dpkg-source: info: unpacking r-cran-qtl_1.50.orig.tar.gz dpkg-source: info: unpacking r-cran-qtl_1.50-1.debian.tar.xz Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-22305836 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-22305836 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-22305836 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package r-cran-qtl dpkg-buildpackage: info: source version 1.50-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary-arch dh binary-arch --buildsystem R dh_update_autotools_config -a -O--buildsystem=R dh_autoreconf -a -O--buildsystem=R dh_auto_configure -a -O--buildsystem=R dh_auto_build -a -O--buildsystem=R dh_auto_test -a -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=R dh_prep -a -O--buildsystem=R dh_auto_install -a -O--buildsystem=R I: R packages needed for DEP8: testthat I: R Package: qtl Version: 1.50 I: Building using R version 4.1.1-2 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Thu, 14 Oct 2021 23:12:17 +0200 mkdir -p /<>/debian/r-cran-qtl/usr/lib/R/site-library R CMD INSTALL -l /<>/debian/r-cran-qtl/usr/lib/R/site-library --clean . "--built-timestamp='Thu, 14 Oct 2021 23:12:17 +0200'" * installing *source* package ‘qtl’ ... ** package ‘qtl’ successfully unpacked and MD5 sums checked ** using staged installation ** libs make[1]: Entering directory '/<>/src' gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-htuhDJ/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c R_init.c -o R_init.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-htuhDJ/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c countXO.c -o countXO.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-htuhDJ/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c discan.c -o discan.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-htuhDJ/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c discan_covar.c -o discan_covar.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-htuhDJ/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c effectscan.c -o effectscan.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-htuhDJ/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fill_geno_nodblXO.c -o fill_geno_nodblXO.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-htuhDJ/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c findDupMarkers_notexact.c -o findDupMarkers_notexact.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-htuhDJ/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fitqtl_hk.c -o fitqtl_hk.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-htuhDJ/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fitqtl_hk_binary.c -o fitqtl_hk_binary.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-htuhDJ/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fitqtl_imp.c -o fitqtl_imp.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-htuhDJ/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fitqtl_imp_binary.c -o fitqtl_imp_binary.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-htuhDJ/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c forwsel.c -o forwsel.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-htuhDJ/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hmm_4way.c -o hmm_4way.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-htuhDJ/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hmm_bc.c -o hmm_bc.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-htuhDJ/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hmm_bci.c -o hmm_bci.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-htuhDJ/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hmm_bcsft.c -o hmm_bcsft.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-htuhDJ/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hmm_bgmagic16.c -o hmm_bgmagic16.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-htuhDJ/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hmm_f2.c -o hmm_f2.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-htuhDJ/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hmm_f2i.c -o hmm_f2i.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-htuhDJ/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hmm_main.c -o hmm_main.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-htuhDJ/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hmm_ri4self.c -o hmm_ri4self.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-htuhDJ/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hmm_ri4sib.c -o hmm_ri4sib.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-htuhDJ/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hmm_ri8self.c -o hmm_ri8self.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-htuhDJ/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hmm_ri8selfIRIP1.c -o hmm_ri8selfIRIP1.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-htuhDJ/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hmm_ri8sib.c -o hmm_ri8sib.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-htuhDJ/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hmm_util.c -o hmm_util.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-htuhDJ/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c inferFounderHap.c -o inferFounderHap.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-htuhDJ/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c info.c -o info.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-htuhDJ/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lapackutil.c -o lapackutil.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-htuhDJ/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c markerlrt.c -o markerlrt.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-htuhDJ/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mqmaugment.cpp -o mqmaugment.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-htuhDJ/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mqmdatatypes.cpp -o mqmdatatypes.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-htuhDJ/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mqmeliminate.cpp -o mqmeliminate.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-htuhDJ/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mqmmapqtl.cpp -o mqmmapqtl.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-htuhDJ/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mqmmixture.cpp -o mqmmixture.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-htuhDJ/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mqmprob.cpp -o mqmprob.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-htuhDJ/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mqmregression.cpp -o mqmregression.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-htuhDJ/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mqmscan.cpp -o mqmscan.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-htuhDJ/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pickMarkerSubset.c -o pickMarkerSubset.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-htuhDJ/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ril48_reorg.c -o ril48_reorg.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-htuhDJ/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ripple.c -o ripple.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-htuhDJ/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c scanone_ehk.c -o scanone_ehk.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-htuhDJ/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c scanone_em.c -o scanone_em.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-htuhDJ/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c scanone_em_covar.c -o scanone_em_covar.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-htuhDJ/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c scanone_hk.c -o scanone_hk.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-htuhDJ/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c scanone_hk_binary.c -o scanone_hk_binary.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-htuhDJ/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c scanone_imp.c -o scanone_imp.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-htuhDJ/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c scanone_mr.c -o scanone_mr.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-htuhDJ/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c scanone_np.c -o scanone_np.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-htuhDJ/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c scantwo_binary_em.c -o scantwo_binary_em.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-htuhDJ/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c scantwo_binary_hk.c -o scantwo_binary_hk.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-htuhDJ/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c scantwo_em.c -o scantwo_em.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-htuhDJ/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c scantwo_hk.c -o scantwo_hk.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-htuhDJ/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c scantwo_imp.c -o scantwo_imp.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-htuhDJ/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c scantwo_mr.c -o scantwo_mr.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-htuhDJ/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c scantwopermhk.c -o scantwopermhk.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-htuhDJ/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c simulate.c -o simulate.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-htuhDJ/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c simulate_ril.c -o simulate_ril.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-htuhDJ/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stahl_mf.c -o stahl_mf.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-htuhDJ/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c summary_scantwo.c -o summary_scantwo.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-htuhDJ/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c test_bcsft.c -o test_bcsft.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-htuhDJ/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c util.c -o util.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-htuhDJ/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c vbscan.c -o vbscan.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-htuhDJ/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c zeroin.c -o zeroin.o g++ -std=gnu++14 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o qtl.so R_init.o countXO.o discan.o discan_covar.o effectscan.o fill_geno_nodblXO.o findDupMarkers_notexact.o fitqtl_hk.o fitqtl_hk_binary.o fitqtl_imp.o fitqtl_imp_binary.o forwsel.o hmm_4way.o hmm_bc.o hmm_bci.o hmm_bcsft.o hmm_bgmagic16.o hmm_f2.o hmm_f2i.o hmm_main.o hmm_ri4self.o hmm_ri4sib.o hmm_ri8self.o hmm_ri8selfIRIP1.o hmm_ri8sib.o hmm_util.o inferFounderHap.o info.o lapackutil.o markerlrt.o mqmaugment.o mqmdatatypes.o mqmeliminate.o mqmmapqtl.o mqmmixture.o mqmprob.o mqmregression.o mqmscan.o pickMarkerSubset.o ril48_reorg.o ripple.o scanone_ehk.o scanone_em.o scanone_em_covar.o scanone_hk.o scanone_hk_binary.o scanone_imp.o scanone_mr.o scanone_np.o scantwo_binary_em.o scantwo_binary_hk.o scantwo_em.o scantwo_hk.o scantwo_imp.o scantwo_mr.o scantwopermhk.o simulate.o simulate_ril.o stahl_mf.o summary_scantwo.o test_bcsft.o util.o vbscan.o zeroin.o -llapack -lblas -lgfortran -lm -L/usr/lib/R/lib -lR make[1]: Leaving directory '/<>/src' make[1]: Entering directory '/<>/src' make[1]: Leaving directory '/<>/src' installing to /<>/debian/r-cran-qtl/usr/lib/R/site-library/00LOCK-r-cran-qtl-1.50/00new/qtl/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (qtl) W: Ignoring specified R dependency: R (>= 2.14.0) I: Using r-cran-testthat for Recommends:testthat I: Use r-cran-qtl as Debian binary package for variables substitution dh_installdocs -a -O--buildsystem=R dh_installchangelogs -a -O--buildsystem=R dh_installsystemduser -a -O--buildsystem=R dh_perl -a -O--buildsystem=R dh_link -a -O--buildsystem=R dh_strip_nondeterminism -a -O--buildsystem=R dh_compress -a -O--buildsystem=R debian/rules override_dh_fixperms make[1]: Entering directory '/<>' dh_fixperms find debian -name create-diff.sh -exec chmod +x \{\} \; make[1]: Leaving directory '/<>' dh_missing -a -O--buildsystem=R dh_dwz -a -a -O--buildsystem=R dh_strip -a -a -O--buildsystem=R d5673314decd20ac222b17d1838ac23dcd1daadb dh_makeshlibs -a -a -O--buildsystem=R dh_shlibdeps -a -a -O--buildsystem=R dh_installdeb -a -O--buildsystem=R dh_gencontrol -a -O--buildsystem=R dh_md5sums -a -O--buildsystem=R dh_builddeb -a -O--buildsystem=R /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. INFO: pkgstriptranslations version 148 INFO: pkgstriptranslations version 148 pkgstriptranslations: processing r-cran-qtl (in debian/r-cran-qtl); do_strip: , oemstrip: pkgstriptranslations: processing r-cran-qtl-dbgsym (in debian/.debhelper/r-cran-qtl/dbgsym-root); do_strip: , oemstrip: /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. pkgstripfiles: processing control file: debian/r-cran-qtl/DEBIAN/control, package r-cran-qtl, directory debian/r-cran-qtl pkgstripfiles: processing control file: debian/.debhelper/r-cran-qtl/dbgsym-root/DEBIAN/control, package r-cran-qtl-dbgsym, directory debian/.debhelper/r-cran-qtl/dbgsym-root dpkg-deb: building package 'r-cran-qtl-dbgsym' in 'debian/.debhelper/scratch-space/build-r-cran-qtl/r-cran-qtl-dbgsym_1.50-1_armhf.deb'. pkgstripfiles: Truncating usr/share/doc/r-cran-qtl/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package r-cran-qtl ... pkgstripfiles: No PNG files. dpkg-deb: building package 'r-cran-qtl' in '../r-cran-qtl_1.50-1_armhf.deb'. Renaming r-cran-qtl-dbgsym_1.50-1_armhf.deb to r-cran-qtl-dbgsym_1.50-1_armhf.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../r-cran-qtl_1.50-1_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2021-10-19T18:09:35Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ r-cran-qtl_1.50-1_armhf.changes: -------------------------------- Format: 1.8 Date: Thu, 14 Oct 2021 23:12:17 +0200 Source: r-cran-qtl Binary: r-cran-qtl Built-For-Profiles: noudeb Architecture: armhf Version: 1.50-1 Distribution: jammy-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: r-cran-qtl - GNU R package for genetic marker linkage analysis Changes: r-cran-qtl (1.50-1) unstable; urgency=medium . * Disable reprotest * New upstream version Checksums-Sha1: ab87326235d9608462dc5a9b987bd7b82b3acb1e 308954 r-cran-qtl-dbgsym_1.50-1_armhf.ddeb 145879f367f8b4e9bfbcd684937b5234f6ed3f42 10761 r-cran-qtl_1.50-1_armhf.buildinfo 6d26a276ef9295bb1aa76166062d788ed830c895 5561178 r-cran-qtl_1.50-1_armhf.deb Checksums-Sha256: b770270d6ae1665838c2eea7154783299e6aa08d5660c47d9dd71cc52b4c5085 308954 r-cran-qtl-dbgsym_1.50-1_armhf.ddeb abd5ab0a8851da855c94c77f52f7eb72a15cec45fcb132ce04bc04e23ba79417 10761 r-cran-qtl_1.50-1_armhf.buildinfo 23d01562ce4886b240f70e12747b282fac0004a27cefbf020ba91954ccc0fae0 5561178 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+------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ r-cran-qtl_1.50-1_armhf.deb --------------------------- new Debian package, version 2.0. size 5561178 bytes: control archive=6280 bytes. 2036 bytes, 38 lines control 16830 bytes, 192 lines md5sums Package: r-cran-qtl Version: 1.50-1 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian R Packages Maintainers Installed-Size: 10134 Depends: r-base-core (>= 4.1.1-2), r-api-4.0, libblas3 | libblas.so.3, libc6 (>= 2.29), libgcc-s1 (>= 3.5), liblapack3 | liblapack.so.3, ruby Recommends: r-cran-testthat Section: gnu-r Priority: optional Homepage: https://cran.r-project.org/package=qtl Description: GNU R package for genetic marker linkage analysis R/qtl is an extensible, interactive environment for mapping quantitative trait loci (QTLs) in experimental crosses. It is implemented as an add-on-package for the freely available and widely used statistical language/software R (see http://www.r-project.org). . The development of this software as an add-on to R allows one to take advantage of the basic mathematical and statistical functions, and powerful graphics capabilities, that are provided with R. Further, the user will benefit by the seamless integration of the QTL mapping software into a general statistical analysis program. The goal is to make complex QTL mapping methods widely accessible and allow users to focus on modeling rather than computing. . A key component of computational methods for QTL mapping is the hidden Markov model (HMM) technology for dealing with missing genotype data. The main HMM algorithms, with allowance for the presence of genotyping errors, for backcrosses, intercrosses, and phase-known four-way crosses were implemented. . The current version of R/qtl includes facilities for estimating genetic maps, identifying genotyping errors, and performing single-QTL genome scans and two-QTL, two-dimensional genome scans, by interval mapping (with the EM algorithm), Haley-Knott regression, and multiple imputation. All of this may be done in the presence of covariates (such as sex, age or treatment). One may also fit higher-order QTL models by multiple imputation. drwxr-xr-x root/root 0 2021-10-14 21:12 ./ drwxr-xr-x root/root 0 2021-10-14 21:12 ./usr/ drwxr-xr-x root/root 0 2021-10-14 21:12 ./usr/lib/ drwxr-xr-x root/root 0 2021-10-14 21:12 ./usr/lib/R/ drwxr-xr-x root/root 0 2021-10-14 21:12 ./usr/lib/R/site-library/ drwxr-xr-x root/root 0 2021-10-14 21:12 ./usr/lib/R/site-library/qtl/ -rw-r--r-- root/root 16947 2021-10-14 21:12 ./usr/lib/R/site-library/qtl/BUGS.txt -rw-r--r-- root/root 941 2021-10-14 21:12 ./usr/lib/R/site-library/qtl/CITATION -rw-r--r-- root/root 1266 2021-10-14 21:12 ./usr/lib/R/site-library/qtl/DESCRIPTION -rw-r--r-- root/root 16089 2021-10-14 21:12 ./usr/lib/R/site-library/qtl/INDEX -rw-r--r-- root/root 5630 2021-10-14 21:12 ./usr/lib/R/site-library/qtl/INSTALL_ME.txt -rw-r--r-- root/root 1183 2021-10-14 21:12 ./usr/lib/R/site-library/qtl/MQM-TODO.txt drwxr-xr-x root/root 0 2021-10-14 21:12 ./usr/lib/R/site-library/qtl/Meta/ -rw-r--r-- root/root 7615 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drwxr-xr-x root/root 0 2021-10-14 21:12 ./usr/share/doc/r-cran-qtl/tests/testthat/ -rw-r--r-- root/root 1319 2016-09-19 17:12 ./usr/share/doc/r-cran-qtl/tests/testthat/test-fliporder.R -rw-r--r-- root/root 2291 2016-09-19 17:12 ./usr/share/doc/r-cran-qtl/tests/testthat/test-scantwoperm.R -rw-r--r-- root/root 1256 2016-09-19 17:12 ./usr/share/doc/r-cran-qtl/tests/testthat/test-stepwiseqtl.R +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build Type: any Build-Space: n/a Build-Time: 188 Distribution: jammy-proposed Host Architecture: armhf Install-Time: 46 Job: r-cran-qtl_1.50-1.dsc Machine Architecture: arm64 Package: r-cran-qtl Package-Time: 238 Source-Version: 1.50-1 Space: n/a Status: successful Version: 1.50-1 -------------------------------------------------------------------------------- Finished at 2021-10-19T18:09:35Z Build needed 00:03:58, no disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=jammy --arch=armhf PACKAGEBUILD-22305836 Scanning for processes to kill in build PACKAGEBUILD-22305836