https://launchpad.net/ubuntu/+source/r-bioc-shortread/1.40.0-1/+build/15652327 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux bos02-arm64-012 4.4.0-138-generic #164-Ubuntu SMP Tue Oct 2 17:15:48 UTC 2018 aarch64 Buildd toolchain package versions: launchpad-buildd_165 python-lpbuildd_165 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.5 dpkg-dev_1.18.4ubuntu1.5 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 12 Nov 11:16:44 ntpdate[1834]: adjust time server 10.211.37.1 offset 0.195901 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=disco --arch=armhf PACKAGEBUILD-15652327 /home/buildd/filecache-default/c94e68d26d8f9980ef1477bde7a83b553e812c5f Creating target for build PACKAGEBUILD-15652327 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=disco --arch=armhf PACKAGEBUILD-15652327 Starting target for build PACKAGEBUILD-15652327 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=disco --arch=armhf PACKAGEBUILD-15652327 'deb http://ftpmaster.internal/ubuntu disco main universe' 'deb http://ftpmaster.internal/ubuntu disco-security main universe' 'deb http://ftpmaster.internal/ubuntu disco-updates main universe' 'deb http://ftpmaster.internal/ubuntu disco-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-15652327 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=disco --arch=armhf PACKAGEBUILD-15652327 Updating target for build PACKAGEBUILD-15652327 Get:1 http://ftpmaster.internal/ubuntu disco InRelease [243 kB] Get:2 http://ftpmaster.internal/ubuntu disco-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu disco-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu disco-proposed InRelease [93.2 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main armhf Packages [970 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main Translation-en [514 kB] Get:7 http://ftpmaster.internal/ubuntu disco/universe armhf Packages [8529 kB] Get:8 http://ftpmaster.internal/ubuntu disco/universe Translation-en [5100 kB] Get:9 http://ftpmaster.internal/ubuntu disco-proposed/main armhf Packages [88.3 kB] Get:10 http://ftpmaster.internal/ubuntu disco-proposed/main Translation-en [58.5 kB] Get:11 http://ftpmaster.internal/ubuntu disco-proposed/universe armhf Packages [444 kB] Get:12 http://ftpmaster.internal/ubuntu disco-proposed/universe Translation-en [255 kB] Fetched 16.4 MB in 7s (2444 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libgdbm5 libperl5.26 perl-modules-5.26 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libgdbm6 libperl5.28 perl-modules-5.28 The following packages will be upgraded: base-files binutils binutils-arm-linux-gnueabihf binutils-common cpp cpp-8 dash dmsetup fakeroot findutils g++ g++-8 gcc gcc-8 gcc-8-base hostname init init-system-helpers libapparmor1 libasan5 libatomic1 libaudit-common libaudit1 libbinutils libcap-ng0 libcc1-0 libdb5.3 libdevmapper1.02.1 libfakeroot libgcc-8-dev libgcc1 libgcrypt20 libgdbm-compat4 libgnutls30 libgomp1 libgpg-error0 libkmod2 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsqlite3-0 libstdc++-8-dev libstdc++6 libsystemd0 libubsan1 libudev1 linux-libc-dev lockfile-progs perl perl-base sed systemd systemd-sysv tzdata 55 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 39.5 MB of archives. After this operation, 40.7 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu disco/main armhf base-files armhf 10.1ubuntu8 [59.8 kB] Get:2 http://ftpmaster.internal/ubuntu disco/main armhf dash armhf 0.5.10.2-1 [81.2 kB] Get:3 http://ftpmaster.internal/ubuntu disco/main armhf findutils armhf 4.6.0+git+20181018-1 [279 kB] Get:4 http://ftpmaster.internal/ubuntu disco/main armhf hostname armhf 3.21 [10.3 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main armhf perl-modules-5.28 all 5.28.0-3 [2818 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main armhf libgdbm6 armhf 1.18.1-1 [24.8 kB] Get:7 http://ftpmaster.internal/ubuntu disco/main armhf libgdbm-compat4 armhf 1.18.1-1 [5784 B] Get:8 http://ftpmaster.internal/ubuntu disco/main armhf libperl5.28 armhf 5.28.0-3 [3153 kB] Get:9 http://ftpmaster.internal/ubuntu disco/main armhf perl armhf 5.28.0-3 [204 kB] Get:10 http://ftpmaster.internal/ubuntu disco/main armhf perl-base armhf 5.28.0-3 [1397 kB] Get:11 http://ftpmaster.internal/ubuntu disco/main armhf libdb5.3 armhf 5.3.28+dfsg1-0.2 [590 kB] Get:12 http://ftpmaster.internal/ubuntu disco/main armhf sed armhf 4.5-2 [178 kB] Get:13 http://ftpmaster.internal/ubuntu disco-proposed/main armhf init-system-helpers all 1.55 [38.5 kB] Get:14 http://ftpmaster.internal/ubuntu disco-proposed/main armhf systemd-sysv armhf 239-7ubuntu10.1 [9404 B] Get:15 http://ftpmaster.internal/ubuntu disco/main armhf libapparmor1 armhf 2.12-4ubuntu10 [25.7 kB] Get:16 http://ftpmaster.internal/ubuntu disco/main armhf libaudit-common all 1:2.8.3-1ubuntu3 [4068 B] Get:17 http://ftpmaster.internal/ubuntu disco/main armhf libcap-ng0 armhf 0.7.9-1build1 [9600 B] Get:18 http://ftpmaster.internal/ubuntu disco/main armhf libaudit1 armhf 1:2.8.3-1ubuntu3 [35.5 kB] Get:19 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libgnutls30 armhf 3.6.4-2ubuntu2 [688 kB] Get:20 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libgpg-error0 armhf 1.32-3 [48.1 kB] Get:21 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libkmod2 armhf 25-1ubuntu1.1 [35.7 kB] Get:22 http://ftpmaster.internal/ubuntu disco-proposed/main armhf systemd armhf 239-7ubuntu10.1 [2804 kB] Get:23 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libsystemd0 armhf 239-7ubuntu10.1 [191 kB] Get:24 http://ftpmaster.internal/ubuntu disco-proposed/main armhf init armhf 1.55 [6476 B] Get:25 http://ftpmaster.internal/ubuntu disco/main armhf libcc1-0 armhf 8.2.0-9ubuntu1 [32.5 kB] Get:26 http://ftpmaster.internal/ubuntu disco/main armhf libgomp1 armhf 8.2.0-9ubuntu1 [66.6 kB] Get:27 http://ftpmaster.internal/ubuntu disco/main armhf libatomic1 armhf 8.2.0-9ubuntu1 [7068 B] Get:28 http://ftpmaster.internal/ubuntu disco/main armhf libasan5 armhf 8.2.0-9ubuntu1 [349 kB] Get:29 http://ftpmaster.internal/ubuntu disco/main armhf libubsan1 armhf 8.2.0-9ubuntu1 [109 kB] Get:30 http://ftpmaster.internal/ubuntu disco/main armhf gcc-8-base armhf 8.2.0-9ubuntu1 [18.6 kB] Get:31 http://ftpmaster.internal/ubuntu disco/main armhf libstdc++6 armhf 8.2.0-9ubuntu1 [350 kB] Get:32 http://ftpmaster.internal/ubuntu disco/main armhf g++-8 armhf 8.2.0-9ubuntu1 [6431 kB] Get:33 http://ftpmaster.internal/ubuntu disco/main armhf libstdc++-8-dev armhf 8.2.0-9ubuntu1 [1594 kB] Get:34 http://ftpmaster.internal/ubuntu disco/main armhf libgcc-8-dev armhf 8.2.0-9ubuntu1 [632 kB] Get:35 http://ftpmaster.internal/ubuntu disco/main armhf gcc-8 armhf 8.2.0-9ubuntu1 [6349 kB] Get:36 http://ftpmaster.internal/ubuntu disco/main armhf cpp-8 armhf 8.2.0-9ubuntu1 [5643 kB] Get:37 http://ftpmaster.internal/ubuntu disco/main armhf libgcc1 armhf 1:8.2.0-9ubuntu1 [37.1 kB] Get:38 http://ftpmaster.internal/ubuntu disco/main armhf libbinutils armhf 2.31.1-7ubuntu1 [309 kB] Get:39 http://ftpmaster.internal/ubuntu disco/main armhf binutils-common armhf 2.31.1-7ubuntu1 [194 kB] Get:40 http://ftpmaster.internal/ubuntu disco/main armhf binutils armhf 2.31.1-7ubuntu1 [3360 B] Get:41 http://ftpmaster.internal/ubuntu disco/main armhf binutils-arm-linux-gnueabihf armhf 2.31.1-7ubuntu1 [2144 kB] Get:42 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libgcrypt20 armhf 1.8.4-3ubuntu1 [364 kB] Get:43 http://ftpmaster.internal/ubuntu disco/main armhf libselinux1 armhf 2.8-1build2 [59.1 kB] Get:44 http://ftpmaster.internal/ubuntu disco/main armhf libsemanage-common all 2.8-1build2 [6892 B] Get:45 http://ftpmaster.internal/ubuntu disco/main armhf libsemanage1 armhf 2.8-1build2 [72.5 kB] Get:46 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libudev1 armhf 239-7ubuntu10.1 [48.3 kB] Get:47 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libseccomp2 armhf 2.3.3-3ubuntu2 [30.5 kB] Get:48 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libdevmapper1.02.1 armhf 2:1.02.145-4.1ubuntu4 [118 kB] Get:49 http://ftpmaster.internal/ubuntu disco-proposed/main armhf dmsetup armhf 2:1.02.145-4.1ubuntu4 [73.6 kB] Get:50 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libsqlite3-0 armhf 3.25.3-1 [447 kB] Get:51 http://ftpmaster.internal/ubuntu disco/main armhf tzdata all 2018g-1 [188 kB] Get:52 http://ftpmaster.internal/ubuntu disco/main armhf g++ armhf 4:8.2.0-2ubuntu2 [1616 B] Get:53 http://ftpmaster.internal/ubuntu disco/main armhf gcc armhf 4:8.2.0-2ubuntu2 [5236 B] Get:54 http://ftpmaster.internal/ubuntu disco/main armhf cpp armhf 4:8.2.0-2ubuntu2 [27.6 kB] Get:55 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libfakeroot armhf 1.23-1 [21.4 kB] Get:56 http://ftpmaster.internal/ubuntu disco-proposed/main armhf fakeroot armhf 1.23-1 [60.3 kB] Get:57 http://ftpmaster.internal/ubuntu disco-proposed/main armhf linux-libc-dev armhf 4.18.0-11.12 [1022 kB] Get:58 http://ftpmaster.internal/ubuntu disco/main armhf lockfile-progs armhf 0.1.18 [9372 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 39.5 MB in 2s (25.0 MB/s) (Reading database ... 12387 files and directories currently installed.) Preparing to unpack .../base-files_10.1ubuntu8_armhf.deb ... Unpacking base-files (10.1ubuntu8) over (10.1ubuntu7) ... Setting up base-files (10.1ubuntu8) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... 12387 files and directories currently installed.) Preparing to unpack .../dash_0.5.10.2-1_armhf.deb ... Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' Unpacking dash (0.5.10.2-1) over (0.5.8-2.10) ... Setting up dash (0.5.10.2-1) ... Removing 'diversion of /bin/sh to /bin/sh.distrib by bash' Adding 'diversion of /bin/sh to /bin/sh.distrib by dash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' (Reading database ... 12387 files and directories currently installed.) Preparing to unpack .../findutils_4.6.0+git+20181018-1_armhf.deb ... Unpacking findutils (4.6.0+git+20181018-1) over (4.6.0+git+20180808-2) ... Setting up findutils (4.6.0+git+20181018-1) ... (Reading database ... 12387 files and directories currently installed.) Preparing to unpack .../hostname_3.21_armhf.deb ... Unpacking hostname (3.21) over (3.20) ... Setting up hostname (3.21) ... (Reading database ... 12387 files and directories currently installed.) Preparing to unpack .../0-perl_5.28.0-3_armhf.deb ... Unpacking perl (5.28.0-3) over (5.26.2-7) ... Selecting previously unselected package perl-modules-5.28. Preparing to unpack .../1-perl-modules-5.28_5.28.0-3_all.deb ... Unpacking perl-modules-5.28 (5.28.0-3) ... Selecting previously unselected package libgdbm6:armhf. Preparing to unpack .../2-libgdbm6_1.18.1-1_armhf.deb ... Unpacking libgdbm6:armhf (1.18.1-1) ... Preparing to unpack .../3-libgdbm-compat4_1.18.1-1_armhf.deb ... Unpacking libgdbm-compat4:armhf (1.18.1-1) over (1.14.1-6) ... Selecting previously unselected package libperl5.28:armhf. Preparing to unpack .../4-libperl5.28_5.28.0-3_armhf.deb ... Unpacking libperl5.28:armhf (5.28.0-3) ... Preparing to unpack .../5-perl-base_5.28.0-3_armhf.deb ... Unpacking perl-base (5.28.0-3) over (5.26.2-7) ... Setting up perl-base (5.28.0-3) ... (Reading database ... 14274 files and directories currently installed.) Preparing to unpack .../libdb5.3_5.3.28+dfsg1-0.2_armhf.deb ... Unpacking libdb5.3:armhf (5.3.28+dfsg1-0.2) over (5.3.28+dfsg1-0.1) ... Setting up libdb5.3:armhf (5.3.28+dfsg1-0.2) ... (Reading database ... 14274 files and directories currently installed.) Preparing to unpack .../archives/sed_4.5-2_armhf.deb ... Unpacking sed (4.5-2) over (4.5-1) ... Setting up sed (4.5-2) ... (Reading database ... 14274 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.55_all.deb ... Unpacking init-system-helpers (1.55) over (1.54) ... Setting up init-system-helpers (1.55) ... (Reading database ... 14274 files and directories currently installed.) Preparing to unpack .../systemd-sysv_239-7ubuntu10.1_armhf.deb ... Unpacking systemd-sysv (239-7ubuntu10.1) over (239-7ubuntu10) ... Preparing to unpack .../libapparmor1_2.12-4ubuntu10_armhf.deb ... Unpacking libapparmor1:armhf (2.12-4ubuntu10) over (2.12-4ubuntu8) ... Preparing to unpack .../libaudit-common_1%3a2.8.3-1ubuntu3_all.deb ... Unpacking libaudit-common (1:2.8.3-1ubuntu3) over (1:2.8.3-1ubuntu2) ... Setting up libaudit-common (1:2.8.3-1ubuntu3) ... (Reading database ... 14274 files and directories currently installed.) Preparing to unpack .../libcap-ng0_0.7.9-1build1_armhf.deb ... Unpacking libcap-ng0:armhf (0.7.9-1build1) over (0.7.9-1) ... Setting up libcap-ng0:armhf (0.7.9-1build1) ... (Reading database ... 14274 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a2.8.3-1ubuntu3_armhf.deb ... Unpacking libaudit1:armhf (1:2.8.3-1ubuntu3) over (1:2.8.3-1ubuntu2) ... Setting up libaudit1:armhf (1:2.8.3-1ubuntu3) ... (Reading database ... 14274 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.6.4-2ubuntu2_armhf.deb ... Unpacking libgnutls30:armhf (3.6.4-2ubuntu2) over (3.6.4-2ubuntu1) ... Setting up libgnutls30:armhf (3.6.4-2ubuntu2) ... (Reading database ... 14274 files and directories currently installed.) Preparing to unpack .../libgpg-error0_1.32-3_armhf.deb ... Unpacking libgpg-error0:armhf (1.32-3) over (1.32-1) ... Setting up libgpg-error0:armhf (1.32-3) ... (Reading database ... 14274 files and directories currently installed.) Preparing to unpack .../libkmod2_25-1ubuntu1.1_armhf.deb ... Unpacking libkmod2:armhf (25-1ubuntu1.1) over (25-1ubuntu1) ... Preparing to unpack .../systemd_239-7ubuntu10.1_armhf.deb ... Unpacking systemd (239-7ubuntu10.1) over (239-7ubuntu10) ... Preparing to unpack .../libsystemd0_239-7ubuntu10.1_armhf.deb ... Unpacking libsystemd0:armhf (239-7ubuntu10.1) over (239-7ubuntu10) ... Setting up libsystemd0:armhf (239-7ubuntu10.1) ... Setting up libapparmor1:armhf (2.12-4ubuntu10) ... Setting up libkmod2:armhf (25-1ubuntu1.1) ... Setting up systemd (239-7ubuntu10.1) ... Setting up systemd-sysv (239-7ubuntu10.1) ... (Reading database ... 14274 files and directories currently installed.) Preparing to unpack .../0-init_1.55_armhf.deb ... Unpacking init (1.55) over (1.54) ... Preparing to unpack .../1-libcc1-0_8.2.0-9ubuntu1_armhf.deb ... Unpacking libcc1-0:armhf (8.2.0-9ubuntu1) over (8.2.0-7ubuntu1) ... Preparing to unpack .../2-libgomp1_8.2.0-9ubuntu1_armhf.deb ... Unpacking libgomp1:armhf (8.2.0-9ubuntu1) over (8.2.0-7ubuntu1) ... Preparing to unpack .../3-libatomic1_8.2.0-9ubuntu1_armhf.deb ... Unpacking libatomic1:armhf (8.2.0-9ubuntu1) over (8.2.0-7ubuntu1) ... Preparing to unpack .../4-libasan5_8.2.0-9ubuntu1_armhf.deb ... Unpacking libasan5:armhf (8.2.0-9ubuntu1) over (8.2.0-7ubuntu1) ... Preparing to unpack .../5-libubsan1_8.2.0-9ubuntu1_armhf.deb ... Unpacking libubsan1:armhf (8.2.0-9ubuntu1) over (8.2.0-7ubuntu1) ... Preparing to unpack .../6-gcc-8-base_8.2.0-9ubuntu1_armhf.deb ... Unpacking gcc-8-base:armhf (8.2.0-9ubuntu1) over (8.2.0-7ubuntu1) ... Setting up gcc-8-base:armhf (8.2.0-9ubuntu1) ... (Reading database ... 14274 files and directories currently installed.) Preparing to unpack .../libstdc++6_8.2.0-9ubuntu1_armhf.deb ... Unpacking libstdc++6:armhf (8.2.0-9ubuntu1) over (8.2.0-7ubuntu1) ... Setting up libstdc++6:armhf (8.2.0-9ubuntu1) ... (Reading database ... 14274 files and directories currently installed.) Preparing to unpack .../0-g++-8_8.2.0-9ubuntu1_armhf.deb ... Unpacking g++-8 (8.2.0-9ubuntu1) over (8.2.0-7ubuntu1) ... Preparing to unpack .../1-libstdc++-8-dev_8.2.0-9ubuntu1_armhf.deb ... Unpacking libstdc++-8-dev:armhf (8.2.0-9ubuntu1) over (8.2.0-7ubuntu1) ... Preparing to unpack .../2-libgcc-8-dev_8.2.0-9ubuntu1_armhf.deb ... Unpacking libgcc-8-dev:armhf (8.2.0-9ubuntu1) over (8.2.0-7ubuntu1) ... Preparing to unpack .../3-gcc-8_8.2.0-9ubuntu1_armhf.deb ... Unpacking gcc-8 (8.2.0-9ubuntu1) over (8.2.0-7ubuntu1) ... Preparing to unpack .../4-cpp-8_8.2.0-9ubuntu1_armhf.deb ... Unpacking cpp-8 (8.2.0-9ubuntu1) over (8.2.0-7ubuntu1) ... Preparing to unpack .../5-libgcc1_1%3a8.2.0-9ubuntu1_armhf.deb ... Unpacking libgcc1:armhf (1:8.2.0-9ubuntu1) over (1:8.2.0-7ubuntu1) ... Setting up libgcc1:armhf (1:8.2.0-9ubuntu1) ... (Reading database ... 14274 files and directories currently installed.) Preparing to unpack .../libbinutils_2.31.1-7ubuntu1_armhf.deb ... Unpacking libbinutils:armhf (2.31.1-7ubuntu1) over (2.31.1-6ubuntu1) ... Preparing to unpack .../binutils-common_2.31.1-7ubuntu1_armhf.deb ... Unpacking binutils-common:armhf (2.31.1-7ubuntu1) over (2.31.1-6ubuntu1) ... Preparing to unpack .../binutils_2.31.1-7ubuntu1_armhf.deb ... Unpacking binutils (2.31.1-7ubuntu1) over (2.31.1-6ubuntu1) ... Preparing to unpack .../binutils-arm-linux-gnueabihf_2.31.1-7ubuntu1_armhf.deb ... Unpacking binutils-arm-linux-gnueabihf (2.31.1-7ubuntu1) over (2.31.1-6ubuntu1) ... Preparing to unpack .../libgcrypt20_1.8.4-3ubuntu1_armhf.deb ... Unpacking libgcrypt20:armhf (1.8.4-3ubuntu1) over (1.8.3-1ubuntu1) ... Setting up libgcrypt20:armhf (1.8.4-3ubuntu1) ... (Reading database ... 14274 files and directories currently installed.) Preparing to unpack .../libselinux1_2.8-1build2_armhf.deb ... Unpacking libselinux1:armhf (2.8-1build2) over (2.8-1build1) ... Setting up libselinux1:armhf (2.8-1build2) ... (Reading database ... 14274 files and directories currently installed.) Preparing to unpack .../libsemanage-common_2.8-1build2_all.deb ... Unpacking libsemanage-common (2.8-1build2) over (2.8-1build1) ... Setting up libsemanage-common (2.8-1build2) ... (Reading database ... 14274 files and directories currently installed.) Preparing to unpack .../libsemanage1_2.8-1build2_armhf.deb ... Unpacking libsemanage1:armhf (2.8-1build2) over (2.8-1build1) ... Setting up libsemanage1:armhf (2.8-1build2) ... (Reading database ... 14274 files and directories currently installed.) Preparing to unpack .../libudev1_239-7ubuntu10.1_armhf.deb ... Unpacking libudev1:armhf (239-7ubuntu10.1) over (239-7ubuntu10) ... Setting up libudev1:armhf (239-7ubuntu10.1) ... (Reading database ... 14274 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.3.3-3ubuntu2_armhf.deb ... Unpacking libseccomp2:armhf (2.3.3-3ubuntu2) over (2.3.3-3ubuntu1) ... Setting up libseccomp2:armhf (2.3.3-3ubuntu2) ... (Reading database ... 14274 files and directories currently installed.) Preparing to unpack .../00-libdevmapper1.02.1_2%3a1.02.145-4.1ubuntu4_armhf.deb ... Unpacking libdevmapper1.02.1:armhf (2:1.02.145-4.1ubuntu4) over (2:1.02.145-4.1ubuntu3) ... Preparing to unpack .../01-dmsetup_2%3a1.02.145-4.1ubuntu4_armhf.deb ... Unpacking dmsetup (2:1.02.145-4.1ubuntu4) over (2:1.02.145-4.1ubuntu3) ... Preparing to unpack .../02-libsqlite3-0_3.25.3-1_armhf.deb ... Unpacking libsqlite3-0:armhf (3.25.3-1) over (3.24.0-1) ... Preparing to unpack .../03-tzdata_2018g-1_all.deb ... Unpacking tzdata (2018g-1) over (2018e-1) ... Preparing to unpack .../04-g++_4%3a8.2.0-2ubuntu2_armhf.deb ... Unpacking g++ (4:8.2.0-2ubuntu2) over (4:8.2.0-1ubuntu1) ... Preparing to unpack .../05-gcc_4%3a8.2.0-2ubuntu2_armhf.deb ... Unpacking gcc (4:8.2.0-2ubuntu2) over (4:8.2.0-1ubuntu1) ... Preparing to unpack .../06-cpp_4%3a8.2.0-2ubuntu2_armhf.deb ... Unpacking cpp (4:8.2.0-2ubuntu2) over (4:8.2.0-1ubuntu1) ... Preparing to unpack .../07-libfakeroot_1.23-1_armhf.deb ... Unpacking libfakeroot:armhf (1.23-1) over (1.22-2ubuntu1) ... Preparing to unpack .../08-fakeroot_1.23-1_armhf.deb ... Unpacking fakeroot (1.23-1) over (1.22-2ubuntu1) ... Preparing to unpack .../09-linux-libc-dev_4.18.0-11.12_armhf.deb ... Unpacking linux-libc-dev:armhf (4.18.0-11.12) over (4.18.0-10.11) ... Preparing to unpack .../10-lockfile-progs_0.1.18_armhf.deb ... Unpacking lockfile-progs (0.1.18) over (0.1.17build1) ... Setting up cpp-8 (8.2.0-9ubuntu1) ... Setting up libgomp1:armhf (8.2.0-9ubuntu1) ... Setting up libatomic1:armhf (8.2.0-9ubuntu1) ... Setting up cpp (4:8.2.0-2ubuntu2) ... Setting up libcc1-0:armhf (8.2.0-9ubuntu1) ... Setting up tzdata (2018g-1) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Nov 12 11:17:36 UTC 2018. Universal Time is now: Mon Nov 12 11:17:36 UTC 2018. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up init (1.55) ... Setting up linux-libc-dev:armhf (4.18.0-11.12) ... Setting up libdevmapper1.02.1:armhf (2:1.02.145-4.1ubuntu4) ... Setting up libgdbm6:armhf (1.18.1-1) ... Setting up binutils-common:armhf (2.31.1-7ubuntu1) ... Setting up perl-modules-5.28 (5.28.0-3) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... Setting up libfakeroot:armhf (1.23-1) ... Setting up libsqlite3-0:armhf (3.25.3-1) ... Setting up dmsetup (2:1.02.145-4.1ubuntu4) ... Setting up libgdbm-compat4:armhf (1.18.1-1) ... Setting up lockfile-progs (0.1.18) ... Setting up libasan5:armhf (8.2.0-9ubuntu1) ... Setting up libubsan1:armhf (8.2.0-9ubuntu1) ... Setting up libbinutils:armhf (2.31.1-7ubuntu1) ... Setting up libperl5.28:armhf (5.28.0-3) ... Setting up binutils-arm-linux-gnueabihf (2.31.1-7ubuntu1) ... Setting up fakeroot (1.23-1) ... Setting up perl (5.28.0-3) ... Setting up libgcc-8-dev:armhf (8.2.0-9ubuntu1) ... Setting up binutils (2.31.1-7ubuntu1) ... Setting up libstdc++-8-dev:armhf (8.2.0-9ubuntu1) ... Setting up gcc-8 (8.2.0-9ubuntu1) ... Setting up g++-8 (8.2.0-9ubuntu1) ... Setting up gcc (4:8.2.0-2ubuntu2) ... Setting up g++ (4:8.2.0-2ubuntu2) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-15652327 armhf disco-proposed -c chroot:build-PACKAGEBUILD-15652327 --arch=armhf --dist=disco-proposed --nolog r-bioc-shortread_1.40.0-1.dsc Initiating build PACKAGEBUILD-15652327 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-138-generic #164-Ubuntu SMP Tue Oct 2 17:15:48 UTC 2018 armv7l sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-arm64-012.buildd +==============================================================================+ | r-bioc-shortread 1.40.0-1 (armhf) 12 Nov 2018 11:17 | +==============================================================================+ Package: r-bioc-shortread Version: 1.40.0-1 Source Version: 1.40.0-1 Distribution: disco-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf I: NOTICE: Log filtering will replace 'build/r-bioc-shortread-v1xl3h/r-bioc-shortread-1.40.0' with '<>' I: NOTICE: Log filtering will replace 'build/r-bioc-shortread-v1xl3h' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-15652327/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- r-bioc-shortread_1.40.0-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-WzwU4W/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-WzwU4W/apt_archive ./ InRelease Get:2 copy:/<>/resolver-WzwU4W/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-WzwU4W/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-WzwU4W/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-WzwU4W/apt_archive ./ Packages [527 B] Fetched 2860 B in 0s (111 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libgdbm5 libperl5.26 perl-modules-5.26 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-WzwU4W/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14274 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11~), dh-r, r-base-dev, r-bioc-biocgenerics (>= 0.23.3), r-bioc-biocparallel, r-bioc-biostrings (>= 2.47.6), r-bioc-rsamtools (>= 1.31.2), r-bioc-genomicalignments (>= 1.15.6), r-bioc-biobase, r-bioc-s4vectors (>= 0.17.25), r-bioc-iranges (>= 2.13.12), r-bioc-genomeinfodb (>= 1.15.2), r-bioc-genomicranges (>= 1.31.8), r-cran-hwriter, r-cran-lattice, r-cran-latticeextra, r-bioc-xvector Filtered Build-Depends: debhelper (>= 11~), dh-r, r-base-dev, r-bioc-biocgenerics (>= 0.23.3), r-bioc-biocparallel, r-bioc-biostrings (>= 2.47.6), r-bioc-rsamtools (>= 1.31.2), r-bioc-genomicalignments (>= 1.15.6), r-bioc-biobase, r-bioc-s4vectors (>= 0.17.25), r-bioc-iranges (>= 2.13.12), r-bioc-genomeinfodb (>= 1.15.2), r-bioc-genomicranges (>= 1.31.8), r-cran-hwriter, r-cran-lattice, r-cran-latticeextra, r-bioc-xvector dpkg-deb: building package 'sbuild-build-depends-r-bioc-shortread-dummy' in '/<>/resolver-hH2CFf/apt_archive/sbuild-build-depends-r-bioc-shortread-dummy.deb'. Ign:1 copy:/<>/resolver-hH2CFf/apt_archive ./ InRelease Get:2 copy:/<>/resolver-hH2CFf/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-hH2CFf/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-hH2CFf/apt_archive ./ Sources [369 B] Get:5 copy:/<>/resolver-hH2CFf/apt_archive ./ Packages [690 B] Fetched 3178 B in 0s (125 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install r-bioc-shortread build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libgdbm5 libperl5.26 perl-modules-5.26 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-8 gir1.2-glib-2.0 gir1.2-harfbuzz-0.0 groff-base icu-devtools intltool-debian libarchive-zip-perl libasn1-8-heimdal libblas-dev libblas3 libbsd0 libbz2-dev libcairo2 libcroco3 libcurl4 libdatrie1 libelf1 libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-8-dev libgfortran5 libgirepository-1.0-1 libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libgraphite2-3 libgraphite2-dev libgssapi-krb5-2 libgssapi3-heimdal libharfbuzz-dev libharfbuzz-gobject0 libharfbuzz-icu0 libharfbuzz0b libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libice6 libicu-dev libicu-le-hb-dev libicu-le-hb0 libicu60 libiculx60 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 libldap-common liblzma-dev libmagic-mgc libmagic1 libmpdec2 libncurses-dev libncurses5-dev libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib libreadline-dev libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libtool libwebp6 libwind0-heimdal libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db mime-support pkg-config po-debconf python3 python3-distutils python3-lib2to3 python3-minimal python3.7 python3.7-minimal r-base-core r-base-dev r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biostrings r-bioc-delayedarray r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicranges r-bioc-iranges r-bioc-rsamtools r-bioc-s4vectors r-bioc-summarizedexperiment r-bioc-xvector r-cran-bitops r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-hwriter r-cran-lambda.r r-cran-lattice r-cran-latticeextra r-cran-matrix r-cran-matrixstats r-cran-rcolorbrewer r-cran-rcurl r-cran-snow ucf unzip x11-common xauth xdg-utils zip zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation debtags dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-multilib gfortran-doc gfortran-8-multilib gfortran-8-doc libgfortran5-dbg libcoarrays-dev groff liblapack-doc libglib2.0-doc libgdk-pixbuf2.0-bin | libgdk-pixbuf2.0-dev libxml2-utils libgraphite2-utils krb5-doc krb5-user icu-doc liblzma-doc ncurses-doc readline-doc tcl8.6 tk8.6 libtool-doc gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python3.7-venv python3.7-doc binfmt-support ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-foreach r-cran-bbmisc r-cran-rmpi r-bioc-variantannotation r-bioc-shortread r-cran-codetools r-cran-knitr r-bioc-bsgenome r-bioc-genomicfeatures r-bioc-rtracklayer r-bioc-gviz r-bioc-annotationhub r-bioc-graph r-cran-data.table r-cran-rmarkdown r-cran-jsonlite r-cran-testthat r-cran-shiny r-cran-base64enc r-cran-ggplot2 r-cran-xml r-cran-rsprng r-cran-rlecuyer Recommended packages: devscripts curl | wget | lynx bzip2-doc libarchive-cpio-perl shared-mime-info xdg-user-dirs krb5-locales libpng-tools publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl r-recommended r-doc-html r-cran-runit r-cran-batchjobs r-cran-doparallel r-bioc-genefilter r-bioc-shortread r-cran-digest r-bioc-annotate r-cran-testit r-cran-codetools r-cran-survival r-cran-testthat libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-8 gir1.2-glib-2.0 gir1.2-harfbuzz-0.0 groff-base icu-devtools intltool-debian libarchive-zip-perl libasn1-8-heimdal libblas-dev libblas3 libbsd0 libbz2-dev libcairo2 libcroco3 libcurl4 libdatrie1 libelf1 libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-8-dev libgfortran5 libgirepository-1.0-1 libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libgraphite2-3 libgraphite2-dev libgssapi-krb5-2 libgssapi3-heimdal libharfbuzz-dev libharfbuzz-gobject0 libharfbuzz-icu0 libharfbuzz0b libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libice6 libicu-dev libicu-le-hb-dev libicu-le-hb0 libicu60 libiculx60 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 libldap-common liblzma-dev libmagic-mgc libmagic1 libmpdec2 libncurses-dev libncurses5-dev libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib libreadline-dev libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libtool libwebp6 libwind0-heimdal libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db mime-support pkg-config po-debconf python3 python3-distutils python3-lib2to3 python3-minimal python3.7 python3.7-minimal r-base-core r-base-dev r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biostrings r-bioc-delayedarray r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicranges r-bioc-iranges r-bioc-rsamtools r-bioc-s4vectors r-bioc-summarizedexperiment r-bioc-xvector r-cran-bitops r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-hwriter r-cran-lambda.r r-cran-lattice r-cran-latticeextra r-cran-matrix r-cran-matrixstats r-cran-rcolorbrewer r-cran-rcurl r-cran-snow sbuild-build-depends-r-bioc-shortread-dummy ucf unzip x11-common xauth xdg-utils zip zlib1g-dev 0 upgraded, 183 newly installed, 0 to remove and 0 not upgraded. Need to get 129 MB of archives. After this operation, 297 MB of additional disk space will be used. Get:1 copy:/<>/resolver-hH2CFf/apt_archive ./ sbuild-build-depends-r-bioc-shortread-dummy 0.invalid.0 [1012 B] Get:2 http://ftpmaster.internal/ubuntu disco/main armhf libpython3.7-minimal armhf 3.7.1-1 [537 kB] Get:3 http://ftpmaster.internal/ubuntu disco/main armhf libexpat1 armhf 2.2.6-1 [60.1 kB] Get:4 http://ftpmaster.internal/ubuntu disco/main armhf python3.7-minimal armhf 3.7.1-1 [1410 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main armhf python3-minimal armhf 3.7.1-1ubuntu1 [23.6 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main armhf mime-support all 3.60ubuntu1 [30.1 kB] Get:7 http://ftpmaster.internal/ubuntu disco/main armhf libmpdec2 armhf 2.4.2-2 [66.4 kB] Get:8 http://ftpmaster.internal/ubuntu disco/main armhf libpython3.7-stdlib armhf 3.7.1-1 [1660 kB] Get:9 http://ftpmaster.internal/ubuntu disco/main armhf python3.7 armhf 3.7.1-1 [272 kB] Get:10 http://ftpmaster.internal/ubuntu disco/main armhf libpython3-stdlib armhf 3.7.1-1ubuntu1 [7128 B] Get:11 http://ftpmaster.internal/ubuntu disco/main armhf python3 armhf 3.7.1-1ubuntu1 [47.2 kB] Get:12 http://ftpmaster.internal/ubuntu disco/main armhf libxau6 armhf 1:1.0.8-1 [7324 B] Get:13 http://ftpmaster.internal/ubuntu disco/main armhf libbsd0 armhf 0.9.1-1 [43.1 kB] Get:14 http://ftpmaster.internal/ubuntu disco/main armhf libxdmcp6 armhf 1:1.1.2-3 [9316 B] Get:15 http://ftpmaster.internal/ubuntu disco/main armhf libxcb1 armhf 1.13.1-1 [40.9 kB] Get:16 http://ftpmaster.internal/ubuntu disco/main armhf libx11-data all 2:1.6.7-1 [113 kB] Get:17 http://ftpmaster.internal/ubuntu disco/main armhf libx11-6 armhf 2:1.6.7-1 [515 kB] Get:18 http://ftpmaster.internal/ubuntu disco/main armhf libxext6 armhf 2:1.3.3-1 [25.1 kB] Get:19 http://ftpmaster.internal/ubuntu disco/main armhf bsdmainutils armhf 11.1.2ubuntu2 [176 kB] Get:20 http://ftpmaster.internal/ubuntu disco/main armhf groff-base armhf 1.22.3-10 [1013 kB] Get:21 http://ftpmaster.internal/ubuntu disco/main armhf libpipeline1 armhf 1.5.0-2 [21.5 kB] Get:22 http://ftpmaster.internal/ubuntu disco-proposed/main armhf man-db armhf 2.8.4-3 [1003 kB] Get:23 http://ftpmaster.internal/ubuntu disco/main armhf x11-common all 1:7.7+19ubuntu8 [22.5 kB] Get:24 http://ftpmaster.internal/ubuntu disco/main armhf libice6 armhf 2:1.0.9-2 [33.5 kB] Get:25 http://ftpmaster.internal/ubuntu disco/main armhf libsm6 armhf 2:1.2.2-1 [13.9 kB] Get:26 http://ftpmaster.internal/ubuntu disco/main armhf libmagic-mgc armhf 1:5.34-2 [197 kB] Get:27 http://ftpmaster.internal/ubuntu disco/main armhf libmagic1 armhf 1:5.34-2 [65.3 kB] Get:28 http://ftpmaster.internal/ubuntu disco/main armhf file armhf 1:5.34-2 [21.9 kB] Get:29 http://ftpmaster.internal/ubuntu disco/main armhf libglib2.0-0 armhf 2.58.1-2 [1024 kB] Get:30 http://ftpmaster.internal/ubuntu disco/main armhf libgirepository-1.0-1 armhf 1.58.0-1build1 [69.6 kB] Get:31 http://ftpmaster.internal/ubuntu disco/main armhf gir1.2-glib-2.0 armhf 1.58.0-1build1 [132 kB] Get:32 http://ftpmaster.internal/ubuntu disco/main armhf libelf1 armhf 0.170-0.5.0ubuntu1 [40.8 kB] Get:33 http://ftpmaster.internal/ubuntu disco/main armhf libfribidi0 armhf 1.0.5-3 [24.2 kB] Get:34 http://ftpmaster.internal/ubuntu disco/main armhf libglib2.0-data all 2.58.1-2 [5476 B] Get:35 http://ftpmaster.internal/ubuntu disco/main armhf libicu60 armhf 60.2-6ubuntu1 [7801 kB] Get:36 http://ftpmaster.internal/ubuntu disco/main armhf libxml2 armhf 2.9.4+dfsg1-7ubuntu2 [533 kB] Get:37 http://ftpmaster.internal/ubuntu disco/main armhf ucf all 3.0038 [50.5 kB] Get:38 http://ftpmaster.internal/ubuntu disco/main armhf gettext-base armhf 0.19.8.1-9 [46.0 kB] Get:39 http://ftpmaster.internal/ubuntu disco/main armhf libkrb5support0 armhf 1.16-2ubuntu1 [27.2 kB] Get:40 http://ftpmaster.internal/ubuntu disco/main armhf libk5crypto3 armhf 1.16-2ubuntu1 [83.1 kB] Get:41 http://ftpmaster.internal/ubuntu disco/main armhf libkeyutils1 armhf 1.5.9-9.3 [8660 B] Get:42 http://ftpmaster.internal/ubuntu disco/main armhf libkrb5-3 armhf 1.16-2ubuntu1 [233 kB] Get:43 http://ftpmaster.internal/ubuntu disco/main armhf libgssapi-krb5-2 armhf 1.16-2ubuntu1 [100 kB] Get:44 http://ftpmaster.internal/ubuntu disco/main armhf libpsl5 armhf 0.20.2-2 [48.7 kB] Get:45 http://ftpmaster.internal/ubuntu disco/main armhf libxmuu1 armhf 2:1.1.2-2 [9130 B] Get:46 http://ftpmaster.internal/ubuntu disco/main armhf xauth armhf 1:1.0.10-1 [21.7 kB] Get:47 http://ftpmaster.internal/ubuntu disco/main armhf libsigsegv2 armhf 2.12-2 [13.1 kB] Get:48 http://ftpmaster.internal/ubuntu disco/main armhf m4 armhf 1.4.18-1ubuntu1 [186 kB] Get:49 http://ftpmaster.internal/ubuntu disco/main armhf autoconf all 2.69-11 [322 kB] Get:50 http://ftpmaster.internal/ubuntu disco/main armhf autotools-dev all 20180224.1 [39.6 kB] Get:51 http://ftpmaster.internal/ubuntu disco-proposed/main armhf automake all 1:1.16.1-4 [522 kB] Get:52 http://ftpmaster.internal/ubuntu disco/main armhf autopoint all 0.19.8.1-9 [412 kB] Get:53 http://ftpmaster.internal/ubuntu disco-proposed/main armhf dctrl-tools armhf 2.24-3 [53.8 kB] Get:54 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libtool all 2.4.6-6 [195 kB] Get:55 http://ftpmaster.internal/ubuntu disco/main armhf dh-autoreconf all 19 [16.1 kB] Get:56 http://ftpmaster.internal/ubuntu disco/main armhf libarchive-zip-perl all 1.64-1 [84.9 kB] Get:57 http://ftpmaster.internal/ubuntu disco/main armhf libfile-stripnondeterminism-perl all 0.45.0-1 [15.1 kB] Get:58 http://ftpmaster.internal/ubuntu disco/main armhf dh-strip-nondeterminism all 0.45.0-1 [5128 B] Get:59 http://ftpmaster.internal/ubuntu disco/main armhf dwz armhf 0.12-2 [72.0 kB] Get:60 http://ftpmaster.internal/ubuntu disco/main armhf libcroco3 armhf 0.6.12-2 [69.4 kB] Get:61 http://ftpmaster.internal/ubuntu disco/main armhf gettext armhf 0.19.8.1-9 [833 kB] Get:62 http://ftpmaster.internal/ubuntu disco/main armhf intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:63 http://ftpmaster.internal/ubuntu disco/main armhf po-debconf all 1.0.20 [232 kB] Get:64 http://ftpmaster.internal/ubuntu disco/main armhf debhelper all 11.3.2ubuntu1 [883 kB] Get:65 http://ftpmaster.internal/ubuntu disco/main armhf zip armhf 3.0-11build1 [145 kB] Get:66 http://ftpmaster.internal/ubuntu disco/main armhf unzip armhf 6.0-21ubuntu1 [148 kB] Get:67 http://ftpmaster.internal/ubuntu disco/main armhf libpaper1 armhf 1.1.24+nmu5ubuntu1 [12.9 kB] Get:68 http://ftpmaster.internal/ubuntu disco/main armhf libpaper-utils armhf 1.1.24+nmu5ubuntu1 [8026 B] Get:69 http://ftpmaster.internal/ubuntu disco/main armhf xdg-utils all 1.1.3-1ubuntu2 [60.5 kB] Get:70 http://ftpmaster.internal/ubuntu disco/main armhf libblas3 armhf 3.8.0-1build1 [98.5 kB] Get:71 http://ftpmaster.internal/ubuntu disco/main armhf libfreetype6 armhf 2.8.1-2ubuntu2 [280 kB] Get:72 http://ftpmaster.internal/ubuntu disco/main armhf fonts-dejavu-core all 2.37-1 [1041 kB] Get:73 http://ftpmaster.internal/ubuntu disco/main armhf fontconfig-config all 2.13.0-5ubuntu3 [28.4 kB] Get:74 http://ftpmaster.internal/ubuntu disco/main armhf libfontconfig1 armhf 2.13.0-5ubuntu3 [93.9 kB] Get:75 http://ftpmaster.internal/ubuntu disco/main armhf libpixman-1-0 armhf 0.34.0-2 [157 kB] Get:76 http://ftpmaster.internal/ubuntu disco/main armhf libxcb-render0 armhf 1.13.1-1 [14.0 kB] Get:77 http://ftpmaster.internal/ubuntu disco/main armhf libxcb-shm0 armhf 1.13.1-1 [5384 B] Get:78 http://ftpmaster.internal/ubuntu disco/main armhf libxrender1 armhf 1:0.9.10-1 [15.6 kB] Get:79 http://ftpmaster.internal/ubuntu disco/main armhf libcairo2 armhf 1.16.0-1 [511 kB] Get:80 http://ftpmaster.internal/ubuntu disco/main armhf libroken18-heimdal armhf 7.5.0+dfsg-2 [34.3 kB] Get:81 http://ftpmaster.internal/ubuntu disco/main armhf libasn1-8-heimdal armhf 7.5.0+dfsg-2 [136 kB] Get:82 http://ftpmaster.internal/ubuntu disco/main armhf libheimbase1-heimdal armhf 7.5.0+dfsg-2 [24.1 kB] Get:83 http://ftpmaster.internal/ubuntu disco/main armhf libhcrypto4-heimdal armhf 7.5.0+dfsg-2 [76.5 kB] Get:84 http://ftpmaster.internal/ubuntu disco/main armhf libwind0-heimdal armhf 7.5.0+dfsg-2 [47.2 kB] Get:85 http://ftpmaster.internal/ubuntu disco/main armhf libhx509-5-heimdal armhf 7.5.0+dfsg-2 [88.0 kB] Get:86 http://ftpmaster.internal/ubuntu disco/main armhf libkrb5-26-heimdal armhf 7.5.0+dfsg-2 [168 kB] Get:87 http://ftpmaster.internal/ubuntu disco/main armhf libheimntlm0-heimdal armhf 7.5.0+dfsg-2 [13.1 kB] Get:88 http://ftpmaster.internal/ubuntu disco/main armhf libgssapi3-heimdal armhf 7.5.0+dfsg-2 [79.0 kB] Get:89 http://ftpmaster.internal/ubuntu disco/main armhf libsasl2-modules-db armhf 2.1.27~101-g0780600+dfsg-3ubuntu2 [13.0 kB] Get:90 http://ftpmaster.internal/ubuntu disco/main armhf libsasl2-2 armhf 2.1.27~101-g0780600+dfsg-3ubuntu2 [42.0 kB] Get:91 http://ftpmaster.internal/ubuntu disco/main armhf libldap-common all 2.4.46+dfsg-5ubuntu2 [16.6 kB] Get:92 http://ftpmaster.internal/ubuntu disco/main armhf libldap-2.4-2 armhf 2.4.46+dfsg-5ubuntu2 [132 kB] Get:93 http://ftpmaster.internal/ubuntu disco/main armhf libnghttp2-14 armhf 1.34.0-1 [68.4 kB] Get:94 http://ftpmaster.internal/ubuntu disco/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2 [49.2 kB] Get:95 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libcurl4 armhf 7.61.0-1ubuntu2.2 [185 kB] Get:96 http://ftpmaster.internal/ubuntu disco/main armhf libjpeg-turbo8 armhf 2.0.0-0ubuntu2 [90.0 kB] Get:97 http://ftpmaster.internal/ubuntu disco/main armhf libjpeg8 armhf 8c-2ubuntu8 [2202 B] Get:98 http://ftpmaster.internal/ubuntu disco/main armhf libgfortran5 armhf 8.2.0-9ubuntu1 [220 kB] Get:99 http://ftpmaster.internal/ubuntu disco/main armhf liblapack3 armhf 3.8.0-1build1 [1618 kB] Get:100 http://ftpmaster.internal/ubuntu disco/main armhf fontconfig armhf 2.13.0-5ubuntu3 [168 kB] Get:101 http://ftpmaster.internal/ubuntu disco/main armhf libthai-data all 0.1.28-1 [134 kB] Get:102 http://ftpmaster.internal/ubuntu disco/main armhf libdatrie1 armhf 0.2.12-1 [15.0 kB] Get:103 http://ftpmaster.internal/ubuntu disco/main armhf libthai0 armhf 0.1.28-1 [14.7 kB] Get:104 http://ftpmaster.internal/ubuntu disco/main armhf libpango-1.0-0 armhf 1.42.4-3 [136 kB] Get:105 http://ftpmaster.internal/ubuntu disco/main armhf libgraphite2-3 armhf 1.3.12-1 [63.1 kB] Get:106 http://ftpmaster.internal/ubuntu disco/main armhf libharfbuzz0b armhf 1.9.0-1 [243 kB] Get:107 http://ftpmaster.internal/ubuntu disco/main armhf libpangoft2-1.0-0 armhf 1.42.4-3 [30.0 kB] Get:108 http://ftpmaster.internal/ubuntu disco/main armhf libpangocairo-1.0-0 armhf 1.42.4-3 [19.5 kB] Get:109 http://ftpmaster.internal/ubuntu disco/main armhf libtcl8.6 armhf 8.6.8+dfsg-4 [777 kB] Get:110 http://ftpmaster.internal/ubuntu disco/main armhf libjbig0 armhf 2.1-3.1build1 [23.9 kB] Get:111 http://ftpmaster.internal/ubuntu disco/main armhf libwebp6 armhf 0.6.1-2 [152 kB] Get:112 http://ftpmaster.internal/ubuntu disco/main armhf libtiff5 armhf 4.0.9+git181026-1 [139 kB] Get:113 http://ftpmaster.internal/ubuntu disco/main armhf libxft2 armhf 2.3.2-2 [31.6 kB] Get:114 http://ftpmaster.internal/ubuntu disco/main armhf libxss1 armhf 1:1.2.3-1 [7512 B] Get:115 http://ftpmaster.internal/ubuntu disco/main armhf libtk8.6 armhf 8.6.8-4 [612 kB] Get:116 http://ftpmaster.internal/ubuntu disco/main armhf libxt6 armhf 1:1.1.5-1 [129 kB] Get:117 http://ftpmaster.internal/ubuntu disco/universe armhf r-base-core armhf 3.5.1-1build1 [23.5 MB] Get:118 http://ftpmaster.internal/ubuntu disco/main armhf libgfortran-8-dev armhf 8.2.0-9ubuntu1 [269 kB] Get:119 http://ftpmaster.internal/ubuntu disco/main armhf gfortran-8 armhf 8.2.0-9ubuntu1 [6006 kB] Get:120 http://ftpmaster.internal/ubuntu disco/main armhf gfortran armhf 4:8.2.0-2ubuntu2 [1372 B] Get:121 http://ftpmaster.internal/ubuntu disco/main armhf libblas-dev armhf 3.8.0-1build1 [105 kB] Get:122 http://ftpmaster.internal/ubuntu disco/main armhf liblapack-dev armhf 3.8.0-1build1 [1666 kB] Get:123 http://ftpmaster.internal/ubuntu disco/main armhf libncurses-dev armhf 6.1+20180210-4ubuntu1 [295 kB] Get:124 http://ftpmaster.internal/ubuntu disco/main armhf libncurses5-dev armhf 6.1+20180210-4ubuntu1 [972 B] Get:125 http://ftpmaster.internal/ubuntu disco/main armhf libreadline-dev armhf 7.0-5 [121 kB] Get:126 http://ftpmaster.internal/ubuntu disco/main armhf libjpeg-turbo8-dev armhf 2.0.0-0ubuntu2 [203 kB] Get:127 http://ftpmaster.internal/ubuntu disco/main armhf libjpeg8-dev armhf 8c-2ubuntu8 [1554 B] Get:128 http://ftpmaster.internal/ubuntu disco/main armhf libjpeg-dev armhf 8c-2ubuntu8 [1554 B] Get:129 http://ftpmaster.internal/ubuntu disco/main armhf libpcre16-3 armhf 2:8.39-11 [128 kB] Get:130 http://ftpmaster.internal/ubuntu disco/main armhf libpcre32-3 armhf 2:8.39-11 [120 kB] Get:131 http://ftpmaster.internal/ubuntu disco/main armhf libpcrecpp0v5 armhf 2:8.39-11 [13.2 kB] Get:132 http://ftpmaster.internal/ubuntu disco/main armhf libpcre3-dev armhf 2:8.39-11 [474 kB] Get:133 http://ftpmaster.internal/ubuntu disco/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-0ubuntu2 [168 kB] Get:134 http://ftpmaster.internal/ubuntu disco/main armhf libpng-dev armhf 1.6.34-2 [163 kB] Get:135 http://ftpmaster.internal/ubuntu disco/main armhf libbz2-dev armhf 1.0.6-9 [28.9 kB] Get:136 http://ftpmaster.internal/ubuntu disco/main armhf liblzma-dev armhf 5.2.2-1.3 [138 kB] Get:137 http://ftpmaster.internal/ubuntu disco/main armhf libicu-le-hb0 armhf 1.0.3+git161113-5 [12.6 kB] Get:138 http://ftpmaster.internal/ubuntu disco/main armhf libiculx60 armhf 60.2-6ubuntu1 [16.1 kB] Get:139 http://ftpmaster.internal/ubuntu disco/main armhf icu-devtools armhf 60.2-6ubuntu1 [164 kB] Get:140 http://ftpmaster.internal/ubuntu disco/main armhf libharfbuzz-icu0 armhf 1.9.0-1 [5284 B] Get:141 http://ftpmaster.internal/ubuntu disco/main armhf libharfbuzz-gobject0 armhf 1.9.0-1 [12.2 kB] Get:142 http://ftpmaster.internal/ubuntu disco/main armhf gir1.2-harfbuzz-0.0 armhf 1.9.0-1 [19.5 kB] Get:143 http://ftpmaster.internal/ubuntu disco/main armhf libglib2.0-bin armhf 2.58.1-2 [65.3 kB] Get:144 http://ftpmaster.internal/ubuntu disco/main armhf python3-lib2to3 all 3.7.1-1ubuntu3 [76.5 kB] Get:145 http://ftpmaster.internal/ubuntu disco/main armhf python3-distutils all 3.7.1-1ubuntu3 [141 kB] Get:146 http://ftpmaster.internal/ubuntu disco/main armhf libglib2.0-dev-bin armhf 2.58.1-2 [102 kB] Get:147 http://ftpmaster.internal/ubuntu disco/main armhf pkg-config armhf 0.29.1-0ubuntu2 [42.0 kB] Get:148 http://ftpmaster.internal/ubuntu disco/main armhf libglib2.0-dev armhf 2.58.1-2 [1301 kB] Get:149 http://ftpmaster.internal/ubuntu disco/main armhf libgraphite2-dev armhf 1.3.12-1 [14.7 kB] Get:150 http://ftpmaster.internal/ubuntu disco/main armhf libharfbuzz-dev armhf 1.9.0-1 [321 kB] Get:151 http://ftpmaster.internal/ubuntu disco/main armhf libicu-le-hb-dev armhf 1.0.3+git161113-5 [27.8 kB] Get:152 http://ftpmaster.internal/ubuntu disco/main armhf libicu-dev armhf 60.2-6ubuntu1 [8712 kB] Get:153 http://ftpmaster.internal/ubuntu disco/universe armhf r-base-dev all 3.5.1-1build1 [4524 B] Get:154 http://ftpmaster.internal/ubuntu disco/main armhf libfile-which-perl all 1.22-1 [12.0 kB] Get:155 http://ftpmaster.internal/ubuntu disco/universe armhf libswitch-perl all 2.17-2 [18.8 kB] Get:156 http://ftpmaster.internal/ubuntu disco/universe armhf dh-r all 20181101 [31.5 kB] Get:157 http://ftpmaster.internal/ubuntu disco-proposed/universe armhf r-bioc-biocgenerics all 0.28.0-1 [642 kB] Get:158 http://ftpmaster.internal/ubuntu disco-proposed/universe armhf r-bioc-biobase armhf 2.42.0-1 [2214 kB] Get:159 http://ftpmaster.internal/ubuntu disco/universe armhf r-cran-formatr all 1.5-3 [144 kB] Get:160 http://ftpmaster.internal/ubuntu disco/universe armhf r-cran-lambda.r all 1.2.3-2 [117 kB] Get:161 http://ftpmaster.internal/ubuntu disco/universe armhf r-cran-futile.options all 1.0.1-2 [19.8 kB] Get:162 http://ftpmaster.internal/ubuntu disco/universe armhf r-cran-futile.logger all 1.4.3-3 [102 kB] Get:163 http://ftpmaster.internal/ubuntu disco/universe armhf r-cran-snow all 1:0.4.3-1 [107 kB] Get:164 http://ftpmaster.internal/ubuntu disco/universe armhf r-bioc-biocparallel armhf 1.14.2-1 [1052 kB] Get:165 http://ftpmaster.internal/ubuntu disco-proposed/universe armhf r-bioc-s4vectors armhf 0.20.1-1 [1807 kB] Get:166 http://ftpmaster.internal/ubuntu disco-proposed/universe armhf r-bioc-iranges armhf 2.16.0-1 [2122 kB] Get:167 http://ftpmaster.internal/ubuntu disco-proposed/universe armhf r-bioc-xvector armhf 0.22.0-1 [597 kB] Get:168 http://ftpmaster.internal/ubuntu disco-proposed/universe armhf r-bioc-biostrings armhf 2.50.1-1 [14.1 MB] Get:169 http://ftpmaster.internal/ubuntu disco/universe armhf r-cran-matrixstats armhf 0.54.0-1 [576 kB] Get:170 http://ftpmaster.internal/ubuntu disco-proposed/universe armhf r-bioc-delayedarray armhf 0.8.0+dfsg-1 [1280 kB] Get:171 http://ftpmaster.internal/ubuntu disco/universe armhf r-cran-bitops armhf 1.0-6-4 [23.3 kB] Get:172 http://ftpmaster.internal/ubuntu disco/universe armhf r-cran-rcurl armhf 1.95-4.11-1 [711 kB] Get:173 http://ftpmaster.internal/ubuntu disco/universe armhf r-bioc-genomeinfodbdata all 1.2.0-1 [9196 kB] Get:174 http://ftpmaster.internal/ubuntu disco-proposed/universe armhf r-bioc-genomeinfodb all 1.18.0-1 [3691 kB] Get:175 http://ftpmaster.internal/ubuntu disco-proposed/universe armhf r-bioc-genomicranges armhf 1.34.0+dfsg-1 [1764 kB] Get:176 http://ftpmaster.internal/ubuntu disco/universe armhf r-cran-lattice armhf 0.20-38-1 [1110 kB] Get:177 http://ftpmaster.internal/ubuntu disco-proposed/universe armhf r-cran-matrix armhf 1.2-15-1 [3322 kB] Get:178 http://ftpmaster.internal/ubuntu disco-proposed/universe armhf r-bioc-summarizedexperiment all 1.12.0+dfsg-1 [1885 kB] Get:179 http://ftpmaster.internal/ubuntu disco-proposed/universe armhf r-bioc-rsamtools armhf 1.34.0-1 [3496 kB] Get:180 http://ftpmaster.internal/ubuntu disco-proposed/universe armhf r-bioc-genomicalignments armhf 1.18.0-1 [2096 kB] Get:181 http://ftpmaster.internal/ubuntu disco/universe armhf r-cran-hwriter all 1.3.2-3 [158 kB] Get:182 http://ftpmaster.internal/ubuntu disco/universe armhf r-cran-rcolorbrewer all 1.1-2-2 [54.4 kB] Get:183 http://ftpmaster.internal/ubuntu disco/universe armhf r-cran-latticeextra armhf 0.6-28-2build2 [2182 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 129 MB in 5s (24.6 MB/s) Selecting previously unselected package libpython3.7-minimal:armhf. (Reading database ... 14274 files and directories currently installed.) Preparing to unpack .../libpython3.7-minimal_3.7.1-1_armhf.deb ... Unpacking libpython3.7-minimal:armhf (3.7.1-1) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../libexpat1_2.2.6-1_armhf.deb ... Unpacking libexpat1:armhf (2.2.6-1) ... Selecting previously unselected package python3.7-minimal. Preparing to unpack .../python3.7-minimal_3.7.1-1_armhf.deb ... Unpacking python3.7-minimal (3.7.1-1) ... Setting up libpython3.7-minimal:armhf (3.7.1-1) ... Setting up libexpat1:armhf (2.2.6-1) ... Setting up python3.7-minimal (3.7.1-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 14523 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.7.1-1ubuntu1_armhf.deb ... Unpacking python3-minimal (3.7.1-1ubuntu1) ... Selecting previously unselected package mime-support. Preparing to unpack .../1-mime-support_3.60ubuntu1_all.deb ... Unpacking mime-support (3.60ubuntu1) ... Selecting previously unselected package libmpdec2:armhf. Preparing to unpack .../2-libmpdec2_2.4.2-2_armhf.deb ... Unpacking libmpdec2:armhf (2.4.2-2) ... Selecting previously unselected package libpython3.7-stdlib:armhf. Preparing to unpack .../3-libpython3.7-stdlib_3.7.1-1_armhf.deb ... Unpacking libpython3.7-stdlib:armhf (3.7.1-1) ... Selecting previously unselected package python3.7. Preparing to unpack .../4-python3.7_3.7.1-1_armhf.deb ... Unpacking python3.7 (3.7.1-1) ... Selecting previously unselected package libpython3-stdlib:armhf. Preparing to unpack .../5-libpython3-stdlib_3.7.1-1ubuntu1_armhf.deb ... Unpacking libpython3-stdlib:armhf (3.7.1-1ubuntu1) ... Setting up python3-minimal (3.7.1-1ubuntu1) ... Selecting previously unselected package python3. (Reading database ... 14957 files and directories currently installed.) Preparing to unpack .../000-python3_3.7.1-1ubuntu1_armhf.deb ... Unpacking python3 (3.7.1-1ubuntu1) ... Selecting previously unselected package libxau6:armhf. Preparing to unpack .../001-libxau6_1%3a1.0.8-1_armhf.deb ... Unpacking libxau6:armhf (1:1.0.8-1) ... Selecting previously unselected package libbsd0:armhf. Preparing to unpack .../002-libbsd0_0.9.1-1_armhf.deb ... Unpacking libbsd0:armhf (0.9.1-1) ... Selecting previously unselected package libxdmcp6:armhf. Preparing to unpack .../003-libxdmcp6_1%3a1.1.2-3_armhf.deb ... Unpacking libxdmcp6:armhf (1:1.1.2-3) ... Selecting previously unselected package libxcb1:armhf. Preparing to unpack .../004-libxcb1_1.13.1-1_armhf.deb ... Unpacking libxcb1:armhf (1.13.1-1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../005-libx11-data_2%3a1.6.7-1_all.deb ... Unpacking libx11-data (2:1.6.7-1) ... Selecting previously unselected package libx11-6:armhf. Preparing to unpack .../006-libx11-6_2%3a1.6.7-1_armhf.deb ... Unpacking libx11-6:armhf (2:1.6.7-1) ... Selecting previously unselected package libxext6:armhf. Preparing to unpack .../007-libxext6_2%3a1.3.3-1_armhf.deb ... Unpacking libxext6:armhf (2:1.3.3-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../008-bsdmainutils_11.1.2ubuntu2_armhf.deb ... Unpacking bsdmainutils (11.1.2ubuntu2) ... Selecting previously unselected package groff-base. Preparing to unpack .../009-groff-base_1.22.3-10_armhf.deb ... Unpacking groff-base (1.22.3-10) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../010-libpipeline1_1.5.0-2_armhf.deb ... Unpacking libpipeline1:armhf (1.5.0-2) ... Selecting previously unselected package man-db. Preparing to unpack .../011-man-db_2.8.4-3_armhf.deb ... Unpacking man-db (2.8.4-3) ... Selecting previously unselected package x11-common. Preparing to unpack .../012-x11-common_1%3a7.7+19ubuntu8_all.deb ... dpkg-query: no packages found matching nux-tools Unpacking x11-common (1:7.7+19ubuntu8) ... Selecting previously unselected package libice6:armhf. Preparing to unpack .../013-libice6_2%3a1.0.9-2_armhf.deb ... Unpacking libice6:armhf (2:1.0.9-2) ... Selecting previously unselected package libsm6:armhf. Preparing to unpack .../014-libsm6_2%3a1.2.2-1_armhf.deb ... Unpacking libsm6:armhf (2:1.2.2-1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../015-libmagic-mgc_1%3a5.34-2_armhf.deb ... Unpacking libmagic-mgc (1:5.34-2) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../016-libmagic1_1%3a5.34-2_armhf.deb ... Unpacking libmagic1:armhf (1:5.34-2) ... Selecting previously unselected package file. Preparing to unpack .../017-file_1%3a5.34-2_armhf.deb ... Unpacking file (1:5.34-2) ... Selecting previously unselected package libglib2.0-0:armhf. Preparing to unpack .../018-libglib2.0-0_2.58.1-2_armhf.deb ... Unpacking libglib2.0-0:armhf (2.58.1-2) ... Selecting previously unselected package libgirepository-1.0-1:armhf. Preparing to unpack .../019-libgirepository-1.0-1_1.58.0-1build1_armhf.deb ... Unpacking libgirepository-1.0-1:armhf (1.58.0-1build1) ... Selecting previously unselected package gir1.2-glib-2.0:armhf. Preparing to unpack .../020-gir1.2-glib-2.0_1.58.0-1build1_armhf.deb ... Unpacking gir1.2-glib-2.0:armhf (1.58.0-1build1) ... Selecting previously unselected package libelf1:armhf. Preparing to unpack .../021-libelf1_0.170-0.5.0ubuntu1_armhf.deb ... Unpacking libelf1:armhf (0.170-0.5.0ubuntu1) ... Selecting previously unselected package libfribidi0:armhf. Preparing to unpack .../022-libfribidi0_1.0.5-3_armhf.deb ... Unpacking libfribidi0:armhf (1.0.5-3) ... Selecting previously unselected package libglib2.0-data. Preparing to unpack .../023-libglib2.0-data_2.58.1-2_all.deb ... Unpacking libglib2.0-data (2.58.1-2) ... Selecting previously unselected package libicu60:armhf. Preparing to unpack .../024-libicu60_60.2-6ubuntu1_armhf.deb ... Unpacking libicu60:armhf (60.2-6ubuntu1) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../025-libxml2_2.9.4+dfsg1-7ubuntu2_armhf.deb ... Unpacking libxml2:armhf (2.9.4+dfsg1-7ubuntu2) ... Selecting previously unselected package ucf. Preparing to unpack .../026-ucf_3.0038_all.deb ... Moving old data out of the way Unpacking ucf (3.0038) ... Selecting previously unselected package gettext-base. Preparing to unpack .../027-gettext-base_0.19.8.1-9_armhf.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libkrb5support0:armhf. Preparing to unpack .../028-libkrb5support0_1.16-2ubuntu1_armhf.deb ... Unpacking libkrb5support0:armhf (1.16-2ubuntu1) ... Selecting previously unselected package libk5crypto3:armhf. Preparing to unpack .../029-libk5crypto3_1.16-2ubuntu1_armhf.deb ... Unpacking libk5crypto3:armhf (1.16-2ubuntu1) ... Selecting previously unselected package libkeyutils1:armhf. Preparing to unpack .../030-libkeyutils1_1.5.9-9.3_armhf.deb ... Unpacking libkeyutils1:armhf (1.5.9-9.3) ... Selecting previously unselected package libkrb5-3:armhf. Preparing to unpack .../031-libkrb5-3_1.16-2ubuntu1_armhf.deb ... Unpacking libkrb5-3:armhf (1.16-2ubuntu1) ... Selecting previously unselected package libgssapi-krb5-2:armhf. Preparing to unpack .../032-libgssapi-krb5-2_1.16-2ubuntu1_armhf.deb ... Unpacking libgssapi-krb5-2:armhf (1.16-2ubuntu1) ... Selecting previously unselected package libpsl5:armhf. Preparing to unpack .../033-libpsl5_0.20.2-2_armhf.deb ... Unpacking libpsl5:armhf (0.20.2-2) ... Selecting previously unselected package libxmuu1:armhf. Preparing to unpack .../034-libxmuu1_2%3a1.1.2-2_armhf.deb ... Unpacking libxmuu1:armhf (2:1.1.2-2) ... Selecting previously unselected package xauth. Preparing to unpack .../035-xauth_1%3a1.0.10-1_armhf.deb ... Unpacking xauth (1:1.0.10-1) ... Selecting previously unselected package libsigsegv2:armhf. Preparing to unpack .../036-libsigsegv2_2.12-2_armhf.deb ... Unpacking libsigsegv2:armhf (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../037-m4_1.4.18-1ubuntu1_armhf.deb ... Unpacking m4 (1.4.18-1ubuntu1) ... Selecting previously unselected package autoconf. Preparing to unpack .../038-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../039-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../040-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../041-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package dctrl-tools. Preparing to unpack .../042-dctrl-tools_2.24-3_armhf.deb ... Unpacking dctrl-tools (2.24-3) ... Selecting previously unselected package libtool. Preparing to unpack .../043-libtool_2.4.6-6_all.deb ... Unpacking libtool (2.4.6-6) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../044-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../045-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../046-libfile-stripnondeterminism-perl_0.45.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (0.45.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../047-dh-strip-nondeterminism_0.45.0-1_all.deb ... Unpacking dh-strip-nondeterminism (0.45.0-1) ... Selecting previously unselected package dwz. Preparing to unpack .../048-dwz_0.12-2_armhf.deb ... Unpacking dwz (0.12-2) ... Selecting previously unselected package libcroco3:armhf. Preparing to unpack .../049-libcroco3_0.6.12-2_armhf.deb ... Unpacking libcroco3:armhf (0.6.12-2) ... Selecting previously unselected package gettext. Preparing to unpack .../050-gettext_0.19.8.1-9_armhf.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../051-intltool-debian_0.35.0+20060710.4_all.deb ... Unpacking intltool-debian (0.35.0+20060710.4) ... Selecting previously unselected package po-debconf. Preparing to unpack .../052-po-debconf_1.0.20_all.deb ... Unpacking po-debconf (1.0.20) ... Selecting previously unselected package debhelper. Preparing to unpack .../053-debhelper_11.3.2ubuntu1_all.deb ... Unpacking debhelper (11.3.2ubuntu1) ... Selecting previously unselected package zip. Preparing to unpack .../054-zip_3.0-11build1_armhf.deb ... Unpacking zip (3.0-11build1) ... Selecting previously unselected package unzip. Preparing to unpack .../055-unzip_6.0-21ubuntu1_armhf.deb ... Unpacking unzip (6.0-21ubuntu1) ... Selecting previously unselected package libpaper1:armhf. Preparing to unpack .../056-libpaper1_1.1.24+nmu5ubuntu1_armhf.deb ... Unpacking libpaper1:armhf (1.1.24+nmu5ubuntu1) ... Selecting previously unselected package libpaper-utils. Preparing to unpack .../057-libpaper-utils_1.1.24+nmu5ubuntu1_armhf.deb ... Unpacking libpaper-utils (1.1.24+nmu5ubuntu1) ... Selecting previously unselected package xdg-utils. Preparing to unpack .../058-xdg-utils_1.1.3-1ubuntu2_all.deb ... Unpacking xdg-utils (1.1.3-1ubuntu2) ... Selecting previously unselected package libblas3:armhf. Preparing to unpack .../059-libblas3_3.8.0-1build1_armhf.deb ... Unpacking libblas3:armhf (3.8.0-1build1) ... Selecting previously unselected package libfreetype6:armhf. Preparing to unpack .../060-libfreetype6_2.8.1-2ubuntu2_armhf.deb ... Unpacking libfreetype6:armhf (2.8.1-2ubuntu2) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../061-fonts-dejavu-core_2.37-1_all.deb ... Unpacking fonts-dejavu-core (2.37-1) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../062-fontconfig-config_2.13.0-5ubuntu3_all.deb ... Unpacking fontconfig-config (2.13.0-5ubuntu3) ... Selecting previously unselected package libfontconfig1:armhf. Preparing to unpack .../063-libfontconfig1_2.13.0-5ubuntu3_armhf.deb ... Unpacking libfontconfig1:armhf (2.13.0-5ubuntu3) ... Selecting previously unselected package libpixman-1-0:armhf. Preparing to unpack .../064-libpixman-1-0_0.34.0-2_armhf.deb ... Unpacking libpixman-1-0:armhf (0.34.0-2) ... Selecting previously unselected package libxcb-render0:armhf. Preparing to unpack .../065-libxcb-render0_1.13.1-1_armhf.deb ... Unpacking libxcb-render0:armhf (1.13.1-1) ... Selecting previously unselected package libxcb-shm0:armhf. Preparing to unpack .../066-libxcb-shm0_1.13.1-1_armhf.deb ... Unpacking libxcb-shm0:armhf (1.13.1-1) ... Selecting previously unselected package libxrender1:armhf. Preparing to unpack .../067-libxrender1_1%3a0.9.10-1_armhf.deb ... Unpacking libxrender1:armhf (1:0.9.10-1) ... Selecting previously unselected package libcairo2:armhf. Preparing to unpack .../068-libcairo2_1.16.0-1_armhf.deb ... Unpacking libcairo2:armhf (1.16.0-1) ... Selecting previously unselected package libroken18-heimdal:armhf. Preparing to unpack .../069-libroken18-heimdal_7.5.0+dfsg-2_armhf.deb ... Unpacking libroken18-heimdal:armhf (7.5.0+dfsg-2) ... Selecting previously unselected package libasn1-8-heimdal:armhf. Preparing to unpack .../070-libasn1-8-heimdal_7.5.0+dfsg-2_armhf.deb ... Unpacking libasn1-8-heimdal:armhf (7.5.0+dfsg-2) ... Selecting previously unselected package libheimbase1-heimdal:armhf. Preparing to unpack .../071-libheimbase1-heimdal_7.5.0+dfsg-2_armhf.deb ... Unpacking libheimbase1-heimdal:armhf (7.5.0+dfsg-2) ... Selecting previously unselected package libhcrypto4-heimdal:armhf. Preparing to unpack .../072-libhcrypto4-heimdal_7.5.0+dfsg-2_armhf.deb ... Unpacking libhcrypto4-heimdal:armhf (7.5.0+dfsg-2) ... Selecting previously unselected package libwind0-heimdal:armhf. Preparing to unpack .../073-libwind0-heimdal_7.5.0+dfsg-2_armhf.deb ... Unpacking libwind0-heimdal:armhf (7.5.0+dfsg-2) ... Selecting previously unselected package libhx509-5-heimdal:armhf. Preparing to unpack .../074-libhx509-5-heimdal_7.5.0+dfsg-2_armhf.deb ... Unpacking libhx509-5-heimdal:armhf (7.5.0+dfsg-2) ... Selecting previously unselected package libkrb5-26-heimdal:armhf. Preparing to unpack .../075-libkrb5-26-heimdal_7.5.0+dfsg-2_armhf.deb ... Unpacking libkrb5-26-heimdal:armhf (7.5.0+dfsg-2) ... Selecting previously unselected package libheimntlm0-heimdal:armhf. Preparing to unpack .../076-libheimntlm0-heimdal_7.5.0+dfsg-2_armhf.deb ... Unpacking libheimntlm0-heimdal:armhf (7.5.0+dfsg-2) ... Selecting previously unselected package libgssapi3-heimdal:armhf. Preparing to unpack .../077-libgssapi3-heimdal_7.5.0+dfsg-2_armhf.deb ... Unpacking libgssapi3-heimdal:armhf (7.5.0+dfsg-2) ... Selecting previously unselected package libsasl2-modules-db:armhf. Preparing to unpack .../078-libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3ubuntu2_armhf.deb ... Unpacking libsasl2-modules-db:armhf (2.1.27~101-g0780600+dfsg-3ubuntu2) ... Selecting previously unselected package libsasl2-2:armhf. Preparing to unpack .../079-libsasl2-2_2.1.27~101-g0780600+dfsg-3ubuntu2_armhf.deb ... Unpacking libsasl2-2:armhf (2.1.27~101-g0780600+dfsg-3ubuntu2) ... Selecting previously unselected package libldap-common. Preparing to unpack .../080-libldap-common_2.4.46+dfsg-5ubuntu2_all.deb ... Unpacking libldap-common (2.4.46+dfsg-5ubuntu2) ... Selecting previously unselected package libldap-2.4-2:armhf. Preparing to unpack .../081-libldap-2.4-2_2.4.46+dfsg-5ubuntu2_armhf.deb ... Unpacking libldap-2.4-2:armhf (2.4.46+dfsg-5ubuntu2) ... Selecting previously unselected package libnghttp2-14:armhf. Preparing to unpack .../082-libnghttp2-14_1.34.0-1_armhf.deb ... Unpacking libnghttp2-14:armhf (1.34.0-1) ... Selecting previously unselected package librtmp1:armhf. Preparing to unpack .../083-librtmp1_2.4+20151223.gitfa8646d.1-2_armhf.deb ... Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d.1-2) ... Selecting previously unselected package libcurl4:armhf. Preparing to unpack .../084-libcurl4_7.61.0-1ubuntu2.2_armhf.deb ... Unpacking libcurl4:armhf (7.61.0-1ubuntu2.2) ... Selecting previously unselected package libjpeg-turbo8:armhf. Preparing to unpack .../085-libjpeg-turbo8_2.0.0-0ubuntu2_armhf.deb ... Unpacking libjpeg-turbo8:armhf (2.0.0-0ubuntu2) ... Selecting previously unselected package libjpeg8:armhf. Preparing to unpack .../086-libjpeg8_8c-2ubuntu8_armhf.deb ... Unpacking libjpeg8:armhf (8c-2ubuntu8) ... Selecting previously unselected package libgfortran5:armhf. Preparing to unpack .../087-libgfortran5_8.2.0-9ubuntu1_armhf.deb ... Unpacking libgfortran5:armhf (8.2.0-9ubuntu1) ... Selecting previously unselected package liblapack3:armhf. Preparing to unpack .../088-liblapack3_3.8.0-1build1_armhf.deb ... Unpacking liblapack3:armhf (3.8.0-1build1) ... Selecting previously unselected package fontconfig. Preparing to unpack .../089-fontconfig_2.13.0-5ubuntu3_armhf.deb ... Unpacking fontconfig (2.13.0-5ubuntu3) ... Selecting previously unselected package libthai-data. Preparing to unpack .../090-libthai-data_0.1.28-1_all.deb ... Unpacking libthai-data (0.1.28-1) ... Selecting previously unselected package libdatrie1:armhf. Preparing to unpack .../091-libdatrie1_0.2.12-1_armhf.deb ... Unpacking libdatrie1:armhf (0.2.12-1) ... Selecting previously unselected package libthai0:armhf. Preparing to unpack .../092-libthai0_0.1.28-1_armhf.deb ... Unpacking libthai0:armhf (0.1.28-1) ... Selecting previously unselected package libpango-1.0-0:armhf. Preparing to unpack .../093-libpango-1.0-0_1.42.4-3_armhf.deb ... Unpacking libpango-1.0-0:armhf (1.42.4-3) ... Selecting previously unselected package libgraphite2-3:armhf. Preparing to unpack .../094-libgraphite2-3_1.3.12-1_armhf.deb ... Unpacking libgraphite2-3:armhf (1.3.12-1) ... Selecting previously unselected package libharfbuzz0b:armhf. Preparing to unpack .../095-libharfbuzz0b_1.9.0-1_armhf.deb ... Unpacking libharfbuzz0b:armhf (1.9.0-1) ... Selecting previously unselected package libpangoft2-1.0-0:armhf. Preparing to unpack .../096-libpangoft2-1.0-0_1.42.4-3_armhf.deb ... Unpacking libpangoft2-1.0-0:armhf (1.42.4-3) ... Selecting previously unselected package libpangocairo-1.0-0:armhf. Preparing to unpack .../097-libpangocairo-1.0-0_1.42.4-3_armhf.deb ... Unpacking libpangocairo-1.0-0:armhf (1.42.4-3) ... Selecting previously unselected package libtcl8.6:armhf. Preparing to unpack .../098-libtcl8.6_8.6.8+dfsg-4_armhf.deb ... Unpacking libtcl8.6:armhf (8.6.8+dfsg-4) ... Selecting previously unselected package libjbig0:armhf. Preparing to unpack .../099-libjbig0_2.1-3.1build1_armhf.deb ... Unpacking libjbig0:armhf (2.1-3.1build1) ... Selecting previously unselected package libwebp6:armhf. Preparing to unpack .../100-libwebp6_0.6.1-2_armhf.deb ... Unpacking libwebp6:armhf (0.6.1-2) ... Selecting previously unselected package libtiff5:armhf. Preparing to unpack .../101-libtiff5_4.0.9+git181026-1_armhf.deb ... Unpacking libtiff5:armhf (4.0.9+git181026-1) ... Selecting previously unselected package libxft2:armhf. Preparing to unpack .../102-libxft2_2.3.2-2_armhf.deb ... Unpacking libxft2:armhf (2.3.2-2) ... Selecting previously unselected package libxss1:armhf. Preparing to unpack .../103-libxss1_1%3a1.2.3-1_armhf.deb ... Unpacking libxss1:armhf (1:1.2.3-1) ... Selecting previously unselected package libtk8.6:armhf. Preparing to unpack .../104-libtk8.6_8.6.8-4_armhf.deb ... Unpacking libtk8.6:armhf (8.6.8-4) ... Selecting previously unselected package libxt6:armhf. Preparing to unpack .../105-libxt6_1%3a1.1.5-1_armhf.deb ... Unpacking libxt6:armhf (1:1.1.5-1) ... Selecting previously unselected package r-base-core. Preparing to unpack .../106-r-base-core_3.5.1-1build1_armhf.deb ... Unpacking r-base-core (3.5.1-1build1) ... Selecting previously unselected package libgfortran-8-dev:armhf. Preparing to unpack .../107-libgfortran-8-dev_8.2.0-9ubuntu1_armhf.deb ... Unpacking libgfortran-8-dev:armhf (8.2.0-9ubuntu1) ... Selecting previously unselected package gfortran-8. Preparing to unpack .../108-gfortran-8_8.2.0-9ubuntu1_armhf.deb ... Unpacking gfortran-8 (8.2.0-9ubuntu1) ... Selecting previously unselected package gfortran. Preparing to unpack .../109-gfortran_4%3a8.2.0-2ubuntu2_armhf.deb ... Unpacking gfortran (4:8.2.0-2ubuntu2) ... Selecting previously unselected package libblas-dev:armhf. Preparing to unpack .../110-libblas-dev_3.8.0-1build1_armhf.deb ... Unpacking libblas-dev:armhf (3.8.0-1build1) ... Selecting previously unselected package liblapack-dev:armhf. Preparing to unpack .../111-liblapack-dev_3.8.0-1build1_armhf.deb ... Unpacking liblapack-dev:armhf (3.8.0-1build1) ... Selecting previously unselected package libncurses-dev:armhf. Preparing to unpack .../112-libncurses-dev_6.1+20180210-4ubuntu1_armhf.deb ... Unpacking libncurses-dev:armhf (6.1+20180210-4ubuntu1) ... Selecting previously unselected package libncurses5-dev:armhf. Preparing to unpack .../113-libncurses5-dev_6.1+20180210-4ubuntu1_armhf.deb ... Unpacking libncurses5-dev:armhf (6.1+20180210-4ubuntu1) ... Selecting previously unselected package libreadline-dev:armhf. Preparing to unpack .../114-libreadline-dev_7.0-5_armhf.deb ... Unpacking libreadline-dev:armhf (7.0-5) ... Selecting previously unselected package libjpeg-turbo8-dev:armhf. Preparing to unpack .../115-libjpeg-turbo8-dev_2.0.0-0ubuntu2_armhf.deb ... Unpacking libjpeg-turbo8-dev:armhf (2.0.0-0ubuntu2) ... Selecting previously unselected package libjpeg8-dev:armhf. Preparing to unpack .../116-libjpeg8-dev_8c-2ubuntu8_armhf.deb ... Unpacking libjpeg8-dev:armhf (8c-2ubuntu8) ... Selecting previously unselected package libjpeg-dev:armhf. Preparing to unpack .../117-libjpeg-dev_8c-2ubuntu8_armhf.deb ... Unpacking libjpeg-dev:armhf (8c-2ubuntu8) ... Selecting previously unselected package libpcre16-3:armhf. Preparing to unpack .../118-libpcre16-3_2%3a8.39-11_armhf.deb ... Unpacking libpcre16-3:armhf (2:8.39-11) ... Selecting previously unselected package libpcre32-3:armhf. Preparing to unpack .../119-libpcre32-3_2%3a8.39-11_armhf.deb ... Unpacking libpcre32-3:armhf (2:8.39-11) ... Selecting previously unselected package libpcrecpp0v5:armhf. Preparing to unpack .../120-libpcrecpp0v5_2%3a8.39-11_armhf.deb ... Unpacking libpcrecpp0v5:armhf (2:8.39-11) ... Selecting previously unselected package libpcre3-dev:armhf. Preparing to unpack .../121-libpcre3-dev_2%3a8.39-11_armhf.deb ... Unpacking libpcre3-dev:armhf (2:8.39-11) ... Selecting previously unselected package zlib1g-dev:armhf. Preparing to unpack .../122-zlib1g-dev_1%3a1.2.11.dfsg-0ubuntu2_armhf.deb ... Unpacking zlib1g-dev:armhf (1:1.2.11.dfsg-0ubuntu2) ... Selecting previously unselected package libpng-dev:armhf. Preparing to unpack .../123-libpng-dev_1.6.34-2_armhf.deb ... Unpacking libpng-dev:armhf (1.6.34-2) ... Selecting previously unselected package libbz2-dev:armhf. Preparing to unpack .../124-libbz2-dev_1.0.6-9_armhf.deb ... Unpacking libbz2-dev:armhf (1.0.6-9) ... Selecting previously unselected package liblzma-dev:armhf. Preparing to unpack .../125-liblzma-dev_5.2.2-1.3_armhf.deb ... Unpacking liblzma-dev:armhf (5.2.2-1.3) ... Selecting previously unselected package libicu-le-hb0:armhf. Preparing to unpack .../126-libicu-le-hb0_1.0.3+git161113-5_armhf.deb ... Unpacking libicu-le-hb0:armhf (1.0.3+git161113-5) ... Selecting previously unselected package libiculx60:armhf. Preparing to unpack .../127-libiculx60_60.2-6ubuntu1_armhf.deb ... Unpacking libiculx60:armhf (60.2-6ubuntu1) ... Selecting previously unselected package icu-devtools. Preparing to unpack .../128-icu-devtools_60.2-6ubuntu1_armhf.deb ... Unpacking icu-devtools (60.2-6ubuntu1) ... Selecting previously unselected package libharfbuzz-icu0:armhf. Preparing to unpack .../129-libharfbuzz-icu0_1.9.0-1_armhf.deb ... Unpacking libharfbuzz-icu0:armhf (1.9.0-1) ... Selecting previously unselected package libharfbuzz-gobject0:armhf. Preparing to unpack .../130-libharfbuzz-gobject0_1.9.0-1_armhf.deb ... Unpacking libharfbuzz-gobject0:armhf (1.9.0-1) ... Selecting previously unselected package gir1.2-harfbuzz-0.0:armhf. Preparing to unpack .../131-gir1.2-harfbuzz-0.0_1.9.0-1_armhf.deb ... Unpacking gir1.2-harfbuzz-0.0:armhf (1.9.0-1) ... Selecting previously unselected package libglib2.0-bin. Preparing to unpack .../132-libglib2.0-bin_2.58.1-2_armhf.deb ... Unpacking libglib2.0-bin (2.58.1-2) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../133-python3-lib2to3_3.7.1-1ubuntu3_all.deb ... Unpacking python3-lib2to3 (3.7.1-1ubuntu3) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../134-python3-distutils_3.7.1-1ubuntu3_all.deb ... Unpacking python3-distutils (3.7.1-1ubuntu3) ... Selecting previously unselected package libglib2.0-dev-bin. Preparing to unpack .../135-libglib2.0-dev-bin_2.58.1-2_armhf.deb ... Unpacking libglib2.0-dev-bin (2.58.1-2) ... Selecting previously unselected package pkg-config. Preparing to unpack .../136-pkg-config_0.29.1-0ubuntu2_armhf.deb ... Unpacking pkg-config (0.29.1-0ubuntu2) ... Selecting previously unselected package libglib2.0-dev:armhf. Preparing to unpack .../137-libglib2.0-dev_2.58.1-2_armhf.deb ... Unpacking libglib2.0-dev:armhf (2.58.1-2) ... Selecting previously unselected package libgraphite2-dev:armhf. Preparing to unpack .../138-libgraphite2-dev_1.3.12-1_armhf.deb ... Unpacking libgraphite2-dev:armhf (1.3.12-1) ... Selecting previously unselected package libharfbuzz-dev:armhf. Preparing to unpack .../139-libharfbuzz-dev_1.9.0-1_armhf.deb ... Unpacking libharfbuzz-dev:armhf (1.9.0-1) ... Selecting previously unselected package libicu-le-hb-dev:armhf. Preparing to unpack .../140-libicu-le-hb-dev_1.0.3+git161113-5_armhf.deb ... Unpacking libicu-le-hb-dev:armhf (1.0.3+git161113-5) ... Selecting previously unselected package libicu-dev. Preparing to unpack .../141-libicu-dev_60.2-6ubuntu1_armhf.deb ... Unpacking libicu-dev (60.2-6ubuntu1) ... Selecting previously unselected package r-base-dev. Preparing to unpack .../142-r-base-dev_3.5.1-1build1_all.deb ... Unpacking r-base-dev (3.5.1-1build1) ... Selecting previously unselected package libfile-which-perl. Preparing to unpack .../143-libfile-which-perl_1.22-1_all.deb ... Unpacking libfile-which-perl (1.22-1) ... Selecting previously unselected package libswitch-perl. Preparing to unpack .../144-libswitch-perl_2.17-2_all.deb ... Unpacking libswitch-perl (2.17-2) ... Selecting previously unselected package dh-r. Preparing to unpack .../145-dh-r_20181101_all.deb ... Unpacking dh-r (20181101) ... Selecting previously unselected package r-bioc-biocgenerics. Preparing to unpack .../146-r-bioc-biocgenerics_0.28.0-1_all.deb ... Unpacking r-bioc-biocgenerics (0.28.0-1) ... Selecting previously unselected package r-bioc-biobase. Preparing to unpack .../147-r-bioc-biobase_2.42.0-1_armhf.deb ... Unpacking r-bioc-biobase (2.42.0-1) ... Selecting previously unselected package r-cran-formatr. Preparing to unpack .../148-r-cran-formatr_1.5-3_all.deb ... Unpacking r-cran-formatr (1.5-3) ... Selecting previously unselected package r-cran-lambda.r. Preparing to unpack .../149-r-cran-lambda.r_1.2.3-2_all.deb ... Unpacking r-cran-lambda.r (1.2.3-2) ... Selecting previously unselected package r-cran-futile.options. Preparing to unpack .../150-r-cran-futile.options_1.0.1-2_all.deb ... Unpacking r-cran-futile.options (1.0.1-2) ... Selecting previously unselected package r-cran-futile.logger. Preparing to unpack .../151-r-cran-futile.logger_1.4.3-3_all.deb ... Unpacking r-cran-futile.logger (1.4.3-3) ... Selecting previously unselected package r-cran-snow. Preparing to unpack .../152-r-cran-snow_1%3a0.4.3-1_all.deb ... Unpacking r-cran-snow (1:0.4.3-1) ... Selecting previously unselected package r-bioc-biocparallel. Preparing to unpack .../153-r-bioc-biocparallel_1.14.2-1_armhf.deb ... Unpacking r-bioc-biocparallel (1.14.2-1) ... Selecting previously unselected package r-bioc-s4vectors. Preparing to unpack .../154-r-bioc-s4vectors_0.20.1-1_armhf.deb ... Unpacking r-bioc-s4vectors (0.20.1-1) ... Selecting previously unselected package r-bioc-iranges. Preparing to unpack .../155-r-bioc-iranges_2.16.0-1_armhf.deb ... Unpacking r-bioc-iranges (2.16.0-1) ... Selecting previously unselected package r-bioc-xvector. Preparing to unpack .../156-r-bioc-xvector_0.22.0-1_armhf.deb ... Unpacking r-bioc-xvector (0.22.0-1) ... Selecting previously unselected package r-bioc-biostrings. Preparing to unpack .../157-r-bioc-biostrings_2.50.1-1_armhf.deb ... Unpacking r-bioc-biostrings (2.50.1-1) ... Selecting previously unselected package r-cran-matrixstats. Preparing to unpack .../158-r-cran-matrixstats_0.54.0-1_armhf.deb ... Unpacking r-cran-matrixstats (0.54.0-1) ... Selecting previously unselected package r-bioc-delayedarray. Preparing to unpack .../159-r-bioc-delayedarray_0.8.0+dfsg-1_armhf.deb ... Unpacking r-bioc-delayedarray (0.8.0+dfsg-1) ... Selecting previously unselected package r-cran-bitops. Preparing to unpack .../160-r-cran-bitops_1.0-6-4_armhf.deb ... Unpacking r-cran-bitops (1.0-6-4) ... Selecting previously unselected package r-cran-rcurl. Preparing to unpack .../161-r-cran-rcurl_1.95-4.11-1_armhf.deb ... Unpacking r-cran-rcurl (1.95-4.11-1) ... Selecting previously unselected package r-bioc-genomeinfodbdata. Preparing to unpack .../162-r-bioc-genomeinfodbdata_1.2.0-1_all.deb ... Unpacking r-bioc-genomeinfodbdata (1.2.0-1) ... Selecting previously unselected package r-bioc-genomeinfodb. Preparing to unpack .../163-r-bioc-genomeinfodb_1.18.0-1_all.deb ... Unpacking r-bioc-genomeinfodb (1.18.0-1) ... Selecting previously unselected package r-bioc-genomicranges. Preparing to unpack .../164-r-bioc-genomicranges_1.34.0+dfsg-1_armhf.deb ... Unpacking r-bioc-genomicranges (1.34.0+dfsg-1) ... Selecting previously unselected package r-cran-lattice. Preparing to unpack .../165-r-cran-lattice_0.20-38-1_armhf.deb ... Unpacking r-cran-lattice (0.20-38-1) ... Selecting previously unselected package r-cran-matrix. Preparing to unpack .../166-r-cran-matrix_1.2-15-1_armhf.deb ... Unpacking r-cran-matrix (1.2-15-1) ... Selecting previously unselected package r-bioc-summarizedexperiment. Preparing to unpack .../167-r-bioc-summarizedexperiment_1.12.0+dfsg-1_all.deb ... Unpacking r-bioc-summarizedexperiment (1.12.0+dfsg-1) ... Selecting previously unselected package r-bioc-rsamtools. Preparing to unpack .../168-r-bioc-rsamtools_1.34.0-1_armhf.deb ... Unpacking r-bioc-rsamtools (1.34.0-1) ... Selecting previously unselected package r-bioc-genomicalignments. Preparing to unpack .../169-r-bioc-genomicalignments_1.18.0-1_armhf.deb ... Unpacking r-bioc-genomicalignments (1.18.0-1) ... Selecting previously unselected package r-cran-hwriter. Preparing to unpack .../170-r-cran-hwriter_1.3.2-3_all.deb ... Unpacking r-cran-hwriter (1.3.2-3) ... Selecting previously unselected package r-cran-rcolorbrewer. Preparing to unpack .../171-r-cran-rcolorbrewer_1.1-2-2_all.deb ... Unpacking r-cran-rcolorbrewer (1.1-2-2) ... Selecting previously unselected package r-cran-latticeextra. Preparing to unpack .../172-r-cran-latticeextra_0.6-28-2build2_armhf.deb ... Unpacking r-cran-latticeextra (0.6-28-2build2) ... Selecting previously unselected package sbuild-build-depends-r-bioc-shortread-dummy. Preparing to unpack .../173-sbuild-build-depends-r-bioc-shortread-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-r-bioc-shortread-dummy (0.invalid.0) ... Setting up libicu60:armhf (60.2-6ubuntu1) ... Setting up libbz2-dev:armhf (1.0.6-9) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libnghttp2-14:armhf (1.34.0-1) ... Setting up mime-support (3.60ubuntu1) ... Setting up libfile-which-perl (1.22-1) ... Setting up libjbig0:armhf (2.1-3.1build1) ... Setting up libsigsegv2:armhf (2.12-2) ... Setting up libldap-common (2.4.46+dfsg-5ubuntu2) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up libpsl5:armhf (0.20.2-2) ... Setting up libelf1:armhf (0.170-0.5.0ubuntu1) ... Setting up groff-base (1.22.3-10) ... Setting up libglib2.0-0:armhf (2.58.1-2) ... No schema files found: doing nothing. Setting up libsasl2-modules-db:armhf (2.1.27~101-g0780600+dfsg-3ubuntu2) ... Setting up unzip (6.0-21ubuntu1) ... Setting up libsasl2-2:armhf (2.1.27~101-g0780600+dfsg-3ubuntu2) ... Setting up dctrl-tools (2.24-3) ... Setting up libdatrie1:armhf (0.2.12-1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up libjpeg-turbo8:armhf (2.0.0-0ubuntu2) ... Setting up libpipeline1:armhf (1.5.0-2) ... Setting up libroken18-heimdal:armhf (7.5.0+dfsg-2) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2) ... Setting up libswitch-perl (2.17-2) ... Setting up m4 (1.4.18-1ubuntu1) ... Setting up libbsd0:armhf (0.9.1-1) ... Setting up libkrb5support0:armhf (1.16-2ubuntu1) ... Setting up ucf (3.0038) ... Setting up libgirepository-1.0-1:armhf (1.58.0-1build1) ... Setting up libxml2:armhf (2.9.4+dfsg1-7ubuntu2) ... Setting up zip (3.0-11build1) ... Setting up libfreetype6:armhf (2.8.1-2ubuntu2) ... Setting up libmagic-mgc (1:5.34-2) ... Setting up libmagic1:armhf (1:5.34-2) ... Setting up libgraphite2-3:armhf (1.3.12-1) ... Setting up libcroco3:armhf (0.6.12-2) ... Setting up pkg-config (0.29.1-0ubuntu2) ... Setting up libpixman-1-0:armhf (0.34.0-2) ... Setting up libblas3:armhf (3.8.0-1build1) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up gir1.2-glib-2.0:armhf (1.58.0-1build1) ... Setting up libjpeg-turbo8-dev:armhf (2.0.0-0ubuntu2) ... Setting up libglib2.0-data (2.58.1-2) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... Setting up dwz (0.12-2) ... Setting up autotools-dev (20180224.1) ... Setting up libheimbase1-heimdal:armhf (7.5.0+dfsg-2) ... Processing triggers for systemd (239-7ubuntu10.1) ... Setting up libfribidi0:armhf (1.0.5-3) ... Setting up libpcrecpp0v5:armhf (2:8.39-11) ... Setting up libpcre32-3:armhf (2:8.39-11) ... Setting up icu-devtools (60.2-6ubuntu1) ... Setting up libpcre16-3:armhf (2:8.39-11) ... Setting up libtcl8.6:armhf (8.6.8+dfsg-4) ... Setting up libthai-data (0.1.28-1) ... Setting up liblzma-dev:armhf (5.2.2-1.3) ... Setting up libxdmcp6:armhf (1:1.1.2-3) ... Setting up libkeyutils1:armhf (1.5.9-9.3) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up x11-common (1:7.7+19ubuntu8) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up xdg-utils (1.1.3-1ubuntu2) ... Setting up libncurses-dev:armhf (6.1+20180210-4ubuntu1) ... Setting up libglib2.0-bin (2.58.1-2) ... Setting up libgfortran5:armhf (8.2.0-9ubuntu1) ... Setting up libgraphite2-dev:armhf (1.3.12-1) ... Setting up libx11-data (2:1.6.7-1) ... Setting up libxau6:armhf (1:1.0.8-1) ... Setting up autopoint (0.19.8.1-9) ... Setting up libmpdec2:armhf (2.4.2-2) ... Setting up libwebp6:armhf (0.6.1-2) ... Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-0ubuntu2) ... Setting up libfile-stripnondeterminism-perl (0.45.0-1) ... Setting up libjpeg8:armhf (8c-2ubuntu8) ... Setting up libpaper1:armhf (1.1.24+nmu5ubuntu1) ... Creating config file /etc/papersize with new version Setting up libk5crypto3:armhf (1.16-2ubuntu1) ... Setting up libpaper-utils (1.1.24+nmu5ubuntu1) ... Setting up libpcre3-dev:armhf (2:8.39-11) ... Setting up libpython3.7-stdlib:armhf (3.7.1-1) ... Setting up fontconfig-config (2.13.0-5ubuntu3) ... Setting up libwind0-heimdal:armhf (7.5.0+dfsg-2) ... Setting up gettext (0.19.8.1-9) ... Setting up libblas-dev:armhf (3.8.0-1build1) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode Setting up libasn1-8-heimdal:armhf (7.5.0+dfsg-2) ... Setting up liblapack3:armhf (3.8.0-1build1) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up libhcrypto4-heimdal:armhf (7.5.0+dfsg-2) ... Setting up libharfbuzz0b:armhf (1.9.0-1) ... Setting up libtiff5:armhf (4.0.9+git181026-1) ... Setting up python3.7 (3.7.1-1) ... Setting up autoconf (2.69-11) ... Setting up libthai0:armhf (0.1.28-1) ... Setting up file (1:5.34-2) ... Setting up libhx509-5-heimdal:armhf (7.5.0+dfsg-2) ... Setting up libncurses5-dev:armhf (6.1+20180210-4ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libjpeg8-dev:armhf (8c-2ubuntu8) ... Setting up gir1.2-harfbuzz-0.0:armhf (1.9.0-1) ... Setting up libjpeg-dev:armhf (8c-2ubuntu8) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libreadline-dev:armhf (7.0-5) ... Setting up libice6:armhf (2:1.0.9-2) ... Setting up man-db (2.8.4-3) ... Not building database; man-db/auto-update is not 'true'. Setting up libkrb5-3:armhf (1.16-2ubuntu1) ... Setting up libkrb5-26-heimdal:armhf (7.5.0+dfsg-2) ... Setting up libpng-dev:armhf (1.6.34-2) ... Setting up libgfortran-8-dev:armhf (8.2.0-9ubuntu1) ... Setting up libxcb1:armhf (1.13.1-1) ... Setting up libharfbuzz-gobject0:armhf (1.9.0-1) ... Setting up libheimntlm0-heimdal:armhf (7.5.0+dfsg-2) ... Setting up liblapack-dev:armhf (3.8.0-1build1) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode Setting up libtool (2.4.6-6) ... Setting up libpython3-stdlib:armhf (3.7.1-1ubuntu1) ... Setting up libfontconfig1:armhf (2.13.0-5ubuntu3) ... Setting up libsm6:armhf (2:1.2.2-1) ... Setting up libxcb-render0:armhf (1.13.1-1) ... Setting up libharfbuzz-icu0:armhf (1.9.0-1) ... Setting up po-debconf (1.0.20) ... Setting up python3 (3.7.1-1ubuntu1) ... Setting up gfortran-8 (8.2.0-9ubuntu1) ... Setting up libicu-le-hb0:armhf (1.0.3+git161113-5) ... Setting up libx11-6:armhf (2:1.6.7-1) ... Setting up libxmuu1:armhf (2:1.1.2-2) ... Setting up libgssapi-krb5-2:armhf (1.16-2ubuntu1) ... Setting up libiculx60:armhf (60.2-6ubuntu1) ... Setting up libxcb-shm0:armhf (1.13.1-1) ... Setting up libxt6:armhf (1:1.1.5-1) ... Setting up libxrender1:armhf (1:0.9.10-1) ... Setting up libxft2:armhf (2.3.2-2) ... Setting up libgssapi3-heimdal:armhf (7.5.0+dfsg-2) ... Setting up python3-lib2to3 (3.7.1-1ubuntu3) ... Setting up python3-distutils (3.7.1-1ubuntu3) ... Setting up fontconfig (2.13.0-5ubuntu3) ... Regenerating fonts cache... done. Setting up gfortran (4:8.2.0-2ubuntu2) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libxext6:armhf (2:1.3.3-1) ... Setting up libglib2.0-dev-bin (2.58.1-2) ... Setting up libxss1:armhf (1:1.2.3-1) ... Setting up libglib2.0-dev:armhf (2.58.1-2) ... Setting up xauth (1:1.0.10-1) ... Setting up libldap-2.4-2:armhf (2.4.46+dfsg-5ubuntu2) ... Setting up libpango-1.0-0:armhf (1.42.4-3) ... Setting up libcairo2:armhf (1.16.0-1) ... Setting up libtk8.6:armhf (8.6.8-4) ... Setting up libcurl4:armhf (7.61.0-1ubuntu2.2) ... Setting up libpangoft2-1.0-0:armhf (1.42.4-3) ... Setting up libpangocairo-1.0-0:armhf (1.42.4-3) ... Setting up r-base-core (3.5.1-1build1) ... Creating config file /etc/R/Renviron with new version Setting up r-bioc-biocgenerics (0.28.0-1) ... Setting up r-bioc-biobase (2.42.0-1) ... Setting up r-cran-rcolorbrewer (1.1-2-2) ... Setting up r-cran-bitops (1.0-6-4) ... Setting up r-cran-formatr (1.5-3) ... Setting up r-cran-futile.options (1.0.1-2) ... Setting up r-cran-rcurl (1.95-4.11-1) ... Setting up r-cran-hwriter (1.3.2-3) ... Setting up r-cran-lambda.r (1.2.3-2) ... Setting up r-cran-matrixstats (0.54.0-1) ... Setting up r-cran-snow (1:0.4.3-1) ... Setting up r-bioc-s4vectors (0.20.1-1) ... Setting up r-cran-lattice (0.20-38-1) ... Setting up r-cran-latticeextra (0.6-28-2build2) ... Setting up r-bioc-genomeinfodbdata (1.2.0-1) ... Setting up r-cran-futile.logger (1.4.3-3) ... Setting up r-bioc-iranges (2.16.0-1) ... Setting up r-bioc-biocparallel (1.14.2-1) ... Setting up r-cran-matrix (1.2-15-1) ... Setting up r-bioc-delayedarray (0.8.0+dfsg-1) ... Setting up r-bioc-genomeinfodb (1.18.0-1) ... Setting up r-bioc-xvector (0.22.0-1) ... Setting up r-bioc-biostrings (2.50.1-1) ... Setting up r-bioc-genomicranges (1.34.0+dfsg-1) ... Setting up r-bioc-summarizedexperiment (1.12.0+dfsg-1) ... Setting up r-bioc-rsamtools (1.34.0-1) ... Setting up r-bioc-genomicalignments (1.18.0-1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (0.45.0-1) ... Setting up libharfbuzz-dev:armhf (1.9.0-1) ... Setting up debhelper (11.3.2ubuntu1) ... Setting up libicu-le-hb-dev:armhf (1.0.3+git161113-5) ... Setting up libicu-dev (60.2-6ubuntu1) ... Setting up r-base-dev (3.5.1-1build1) ... Setting up dh-r (20181101) ... Setting up sbuild-build-depends-r-bioc-shortread-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... Processing triggers for systemd (239-7ubuntu10.1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-138-generic arm64 (armv7l) Toolchain package versions: binutils_2.31.1-7ubuntu1 dpkg-dev_1.19.0.5ubuntu5 g++-8_8.2.0-9ubuntu1 gcc-8_8.2.0-9ubuntu1 libc6-dev_2.28-0ubuntu1 libstdc++-8-dev_8.2.0-9ubuntu1 libstdc++6_8.2.0-9ubuntu1 linux-libc-dev_4.18.0-11.12 Package versions: adduser_3.117ubuntu1 advancecomp_2.1-1 apt_1.7.0 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1ubuntu8 base-passwd_3.5.45 bash_4.4.18-2ubuntu3 binutils_2.31.1-7ubuntu1 binutils-arm-linux-gnueabihf_2.31.1-7ubuntu1 binutils-common_2.31.1-7ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.32-0.1ubuntu2 build-essential_12.5ubuntu2 bzip2_1.0.6-9 ca-certificates_20180409 coreutils_8.28-1ubuntu2 cpp_4:8.2.0-2ubuntu2 cpp-8_8.2.0-9ubuntu1 dash_0.5.10.2-1 dctrl-tools_2.24-3 debconf_1.5.69 debhelper_11.3.2ubuntu1 debianutils_4.8.6 dh-autoreconf_19 dh-r_20181101 dh-strip-nondeterminism_0.45.0-1 diffutils_1:3.6-1 dmsetup_2:1.02.145-4.1ubuntu4 dpkg_1.19.0.5ubuntu5 dpkg-dev_1.19.0.5ubuntu5 dwz_0.12-2 e2fslibs_1.44.4-2 e2fsprogs_1.44.4-2 fakeroot_1.23-1 fdisk_2.32-0.1ubuntu2 file_1:5.34-2 findutils_4.6.0+git+20181018-1 fontconfig_2.13.0-5ubuntu3 fontconfig-config_2.13.0-5ubuntu3 fonts-dejavu-core_2.37-1 g++_4:8.2.0-2ubuntu2 g++-8_8.2.0-9ubuntu1 gcc_4:8.2.0-2ubuntu2 gcc-8_8.2.0-9ubuntu1 gcc-8-base_8.2.0-9ubuntu1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gfortran_4:8.2.0-2ubuntu2 gfortran-8_8.2.0-9ubuntu1 gir1.2-glib-2.0_1.58.0-1build1 gir1.2-harfbuzz-0.0_1.9.0-1 gpg_2.2.8-3ubuntu1 gpg-agent_2.2.8-3ubuntu1 gpgconf_2.2.8-3ubuntu1 gpgv_2.2.8-3ubuntu1 grep_3.1-2ubuntu1 groff-base_1.22.3-10 gzip_1.6-5ubuntu2 hostname_3.21 icu-devtools_60.2-6ubuntu1 init_1.55 init-system-helpers_1.55 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libapparmor1_2.12-4ubuntu10 libapt-pkg5.0_1.7.0 libarchive-zip-perl_1.64-1 libargon2-1_0~20171227-0.1 libasan5_8.2.0-9ubuntu1 libasn1-8-heimdal_7.5.0+dfsg-2 libassuan0_2.5.1-2 libatomic1_8.2.0-9ubuntu1 libattr1_1:2.4.47-2build1 libaudit-common_1:2.8.3-1ubuntu3 libaudit1_1:2.8.3-1ubuntu3 libbinutils_2.31.1-7ubuntu1 libblas-dev_3.8.0-1build1 libblas3_3.8.0-1build1 libblkid1_2.32-0.1ubuntu2 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-9 libbz2-dev_1.0.6-9 libc-bin_2.28-0ubuntu1 libc-dev-bin_2.28-0ubuntu1 libc6_2.28-0ubuntu1 libc6-dev_2.28-0ubuntu1 libcairo2_1.16.0-1 libcap-ng0_0.7.9-1build1 libcap2_1:2.25-1.2 libcc1-0_8.2.0-9ubuntu1 libcom-err2_1.44.4-2 libcomerr2_1.44.4-2 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.4-2ubuntu2 libcurl4_7.61.0-1ubuntu2.2 libdatrie1_0.2.12-1 libdb5.3_5.3.28+dfsg1-0.2 libdebconfclient0_0.244ubuntu1 libdevmapper1.02.1_2:1.02.145-4.1ubuntu4 libdpkg-perl_1.19.0.5ubuntu5 libelf1_0.170-0.5.0ubuntu1 libexpat1_2.2.6-1 libext2fs2_1.44.4-2 libfakeroot_1.23-1 libfdisk1_2.32-0.1ubuntu2 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.45.0-1 libfile-which-perl_1.22-1 libfontconfig1_2.13.0-5ubuntu3 libfreetype6_2.8.1-2ubuntu2 libfribidi0_1.0.5-3 libgcc-8-dev_8.2.0-9ubuntu1 libgcc1_1:8.2.0-9ubuntu1 libgcrypt20_1.8.4-3ubuntu1 libgdbm-compat4_1.18.1-1 libgdbm5_1.14.1-6 libgdbm6_1.18.1-1 libgfortran-8-dev_8.2.0-9ubuntu1 libgfortran5_8.2.0-9ubuntu1 libgirepository-1.0-1_1.58.0-1build1 libglib2.0-0_2.58.1-2 libglib2.0-bin_2.58.1-2 libglib2.0-data_2.58.1-2 libglib2.0-dev_2.58.1-2 libglib2.0-dev-bin_2.58.1-2 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.6.4-2ubuntu2 libgomp1_8.2.0-9ubuntu1 libgpg-error0_1.32-3 libgraphite2-3_1.3.12-1 libgraphite2-dev_1.3.12-1 libgssapi-krb5-2_1.16-2ubuntu1 libgssapi3-heimdal_7.5.0+dfsg-2 libharfbuzz-dev_1.9.0-1 libharfbuzz-gobject0_1.9.0-1 libharfbuzz-icu0_1.9.0-1 libharfbuzz0b_1.9.0-1 libhcrypto4-heimdal_7.5.0+dfsg-2 libheimbase1-heimdal_7.5.0+dfsg-2 libheimntlm0-heimdal_7.5.0+dfsg-2 libhogweed4_3.4-1 libhx509-5-heimdal_7.5.0+dfsg-2 libice6_2:1.0.9-2 libicu-dev_60.2-6ubuntu1 libicu-le-hb-dev_1.0.3+git161113-5 libicu-le-hb0_1.0.3+git161113-5 libicu60_60.2-6ubuntu1 libiculx60_60.2-6ubuntu1 libidn11_1.33-2.2ubuntu1 libidn2-0_2.0.5-1 libip4tc0_1.6.1-2ubuntu2 libisl19_0.20-2 libjbig0_2.1-3.1build1 libjpeg-dev_8c-2ubuntu8 libjpeg-turbo8_2.0.0-0ubuntu2 libjpeg-turbo8-dev_2.0.0-0ubuntu2 libjpeg8_8c-2ubuntu8 libjpeg8-dev_8c-2ubuntu8 libjson-c3_0.12.1-1.3 libk5crypto3_1.16-2ubuntu1 libkeyutils1_1.5.9-9.3 libkmod2_25-1ubuntu1.1 libkrb5-26-heimdal_7.5.0+dfsg-2 libkrb5-3_1.16-2ubuntu1 libkrb5support0_1.16-2ubuntu1 liblapack-dev_3.8.0-1build1 liblapack3_3.8.0-1build1 libldap-2.4-2_2.4.46+dfsg-5ubuntu2 libldap-common_2.4.46+dfsg-5ubuntu2 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 liblz4-1_1.8.2-1ubuntu1 liblzma-dev_5.2.2-1.3 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.34-2 libmagic1_1:5.34-2 libmount1_2.32-0.1ubuntu2 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.1-1 libncurses-dev_6.1+20180210-4ubuntu1 libncurses5-dev_6.1+20180210-4ubuntu1 libncurses6_6.1+20180210-4ubuntu1 libncursesw6_6.1+20180210-4ubuntu1 libnettle6_3.4-1 libnghttp2-14_1.34.0-1 libnpth0_1.6-1 libp11-kit0_0.23.14-2 libpam-modules_1.1.8-3.6ubuntu2 libpam-modules-bin_1.1.8-3.6ubuntu2 libpam-runtime_1.1.8-3.6ubuntu2 libpam0g_1.1.8-3.6ubuntu2 libpango-1.0-0_1.42.4-3 libpangocairo-1.0-0_1.42.4-3 libpangoft2-1.0-0_1.42.4-3 libpaper-utils_1.1.24+nmu5ubuntu1 libpaper1_1.1.24+nmu5ubuntu1 libpcre16-3_2:8.39-11 libpcre3_2:8.39-11 libpcre3-dev_2:8.39-11 libpcre32-3_2:8.39-11 libpcrecpp0v5_2:8.39-11 libperl5.26_5.26.2-7 libperl5.28_5.28.0-3 libpipeline1_1.5.0-2 libpixman-1-0_0.34.0-2 libpng-dev_1.6.34-2 libpng16-16_1.6.34-2 libprocps7_2:3.3.15-2ubuntu1 libpsl5_0.20.2-2 libpython3-stdlib_3.7.1-1ubuntu1 libpython3.7-minimal_3.7.1-1 libpython3.7-stdlib_3.7.1-1 libreadline-dev_7.0-5 libreadline7_7.0-5 libroken18-heimdal_7.5.0+dfsg-2 librtmp1_2.4+20151223.gitfa8646d.1-2 libsasl2-2_2.1.27~101-g0780600+dfsg-3ubuntu2 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3ubuntu2 libseccomp2_2.3.3-3ubuntu2 libselinux1_2.8-1build2 libsemanage-common_2.8-1build2 libsemanage1_2.8-1build2 libsepol1_2.8-1 libsigsegv2_2.12-2 libslang2_2.3.2-1ubuntu1 libsm6_2:1.2.2-1 libsmartcols1_2.32-0.1ubuntu2 libsqlite3-0_3.25.3-1 libss2_1.44.4-2 libssl1.1_1.1.1-1ubuntu2 libstdc++-8-dev_8.2.0-9ubuntu1 libstdc++6_8.2.0-9ubuntu1 libswitch-perl_2.17-2 libsystemd0_239-7ubuntu10.1 libtasn1-6_4.13-3 libtcl8.6_8.6.8+dfsg-4 libthai-data_0.1.28-1 libthai0_0.1.28-1 libtiff5_4.0.9+git181026-1 libtinfo6_6.1+20180210-4ubuntu1 libtk8.6_8.6.8-4 libtool_2.4.6-6 libubsan1_8.2.0-9ubuntu1 libudev1_239-7ubuntu10.1 libunistring2_0.9.10-1ubuntu1 libusb-0.1-4_2:0.1.12-32 libuuid1_2.32-0.1ubuntu2 libwebp6_0.6.1-2 libwind0-heimdal_7.5.0+dfsg-2 libx11-6_2:1.6.7-1 libx11-data_2:1.6.7-1 libxau6_1:1.0.8-1 libxcb-render0_1.13.1-1 libxcb-shm0_1.13.1-1 libxcb1_1.13.1-1 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.3-1 libxft2_2.3.2-2 libxml2_2.9.4+dfsg1-7ubuntu2 libxmuu1_2:1.1.2-2 libxrender1_1:0.9.10-1 libxss1_1:1.2.3-1 libxt6_1:1.1.5-1 libzstd1_1.3.5+dfsg-1ubuntu1 linux-libc-dev_4.18.0-11.12 lockfile-progs_0.1.18 login_1:4.5-1ubuntu1 lsb-base_9.20170808ubuntu1 m4_1.4.18-1ubuntu1 make_4.2.1-1.2 man-db_2.8.4-3 mawk_1.3.3-17ubuntu3 mime-support_3.60ubuntu1 mount_2.32-0.1ubuntu2 multiarch-support_2.28-0ubuntu1 ncurses-base_6.1+20180210-4ubuntu1 ncurses-bin_6.1+20180210-4ubuntu1 openssl_1.1.1-1ubuntu2 optipng_0.7.6-1.1 passwd_1:4.5-1ubuntu1 patch_2.7.6-3 perl_5.28.0-3 perl-base_5.28.0-3 perl-modules-5.26_5.26.2-7 perl-modules-5.28_5.28.0-3 pinentry-curses_1.1.0-1build2 pkg-config_0.29.1-0ubuntu2 pkgbinarymangler_143 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu1 python3_3.7.1-1ubuntu1 python3-distutils_3.7.1-1ubuntu3 python3-lib2to3_3.7.1-1ubuntu3 python3-minimal_3.7.1-1ubuntu1 python3.7_3.7.1-1 python3.7-minimal_3.7.1-1 r-base-core_3.5.1-1build1 r-base-dev_3.5.1-1build1 r-bioc-biobase_2.42.0-1 r-bioc-biocgenerics_0.28.0-1 r-bioc-biocparallel_1.14.2-1 r-bioc-biostrings_2.50.1-1 r-bioc-delayedarray_0.8.0+dfsg-1 r-bioc-genomeinfodb_1.18.0-1 r-bioc-genomeinfodbdata_1.2.0-1 r-bioc-genomicalignments_1.18.0-1 r-bioc-genomicranges_1.34.0+dfsg-1 r-bioc-iranges_2.16.0-1 r-bioc-rsamtools_1.34.0-1 r-bioc-s4vectors_0.20.1-1 r-bioc-summarizedexperiment_1.12.0+dfsg-1 r-bioc-xvector_0.22.0-1 r-cran-bitops_1.0-6-4 r-cran-formatr_1.5-3 r-cran-futile.logger_1.4.3-3 r-cran-futile.options_1.0.1-2 r-cran-hwriter_1.3.2-3 r-cran-lambda.r_1.2.3-2 r-cran-lattice_0.20-38-1 r-cran-latticeextra_0.6-28-2build2 r-cran-matrix_1.2-15-1 r-cran-matrixstats_0.54.0-1 r-cran-rcolorbrewer_1.1-2-2 r-cran-rcurl_1.95-4.11-1 r-cran-snow_1:0.4.3-1 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-shortread-dummy_0.invalid.0 sed_4.5-2 sensible-utils_0.0.12 systemd_239-7ubuntu10.1 systemd-sysv_239-7ubuntu10.1 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu2 tar_1.30+dfsg-2 tzdata_2018g-1 ubuntu-keyring_2018.09.18.1 ucf_3.0038 unzip_6.0-21ubuntu1 util-linux_2.32-0.1ubuntu2 x11-common_1:7.7+19ubuntu8 xauth_1:1.0.10-1 xdg-utils_1.1.3-1ubuntu2 xz-utils_5.2.2-1.3 zip_3.0-11build1 zlib1g_1:1.2.11.dfsg-0ubuntu2 zlib1g-dev_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Mon Nov 12 07:07:58 2018 UTC gpgv: using RSA key 9A3C07BD06DE2F416E813A5D612EF1613E050F54 gpgv: issuer "daissi@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./r-bioc-shortread_1.40.0-1.dsc dpkg-source: info: extracting r-bioc-shortread in r-bioc-shortread-1.40.0 dpkg-source: info: unpacking r-bioc-shortread_1.40.0.orig.tar.gz dpkg-source: info: unpacking r-bioc-shortread_1.40.0-1.debian.tar.xz dpkg-source: info: applying use_debian_packaged_zlib.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-15652327 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-15652327 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-15652327 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package r-bioc-shortread dpkg-buildpackage: info: source version 1.40.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build r-bioc-shortread-1.40.0 dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean --buildsystem R dh_testdir -O--buildsystem=R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules build-arch dh build-arch --buildsystem R dh_testdir -a -O--buildsystem=R dh_update_autotools_config -a -O--buildsystem=R dh_autoreconf -a -O--buildsystem=R dh_auto_configure -a -O--buildsystem=R dh_auto_build -a -O--buildsystem=R dh_auto_test -a -O--buildsystem=R create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --buildsystem R dh_testroot -a -O--buildsystem=R dh_prep -a -O--buildsystem=R dh_installdirs -a -O--buildsystem=R dh_auto_install -a -O--buildsystem=R I: R packages needed for DEP8: runit I: R Package: ShortRead Version: 1.40.0 I: Building using R version 3.5.1-1build1 I: R API version: r-api-3.5 I: Using built-time from d/changelog: Mon, 12 Nov 2018 08:02:46 +0100 mkdir -p /<>/debian/r-bioc-shortread/usr/lib/R/site-library R CMD INSTALL -l /<>/debian/r-bioc-shortread/usr/lib/R/site-library --clean . "--built-timestamp='Mon, 12 Nov 2018 08:02:46 +0100'" * installing *source* package ‘ShortRead’ ... checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for gzeof in -lz... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking size of unsigned long... 4 configure: creating ./config.status config.status: creating src/Makevars ** libs make[1]: Entering directory '/<>/src' gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-h8QLYb/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Biostrings_stubs.c -o Biostrings_stubs.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-h8QLYb/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c IRanges_stubs.c -o IRanges_stubs.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-h8QLYb/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c R_init_ShortRead.c -o R_init_ShortRead.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-h8QLYb/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c S4Vectors_stubs.c -o S4Vectors_stubs.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-h8QLYb/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c XVector_stubs.c -o XVector_stubs.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-h8QLYb/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c alphabet.c -o alphabet.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-h8QLYb/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c io.c -o io.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-h8QLYb/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c io_bowtie.c -o io_bowtie.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-h8QLYb/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c io_soap.c -o io_soap.o g++ -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_LIBZ=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DSIZEOF_UNSIGNED_LONG=4 -fpic -g -O2 -fdebug-prefix-map=/build/r-base-h8QLYb/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readBfaToc.cc -o readBfaToc.o readBfaToc.cc: In function ‘SEXPREC* readBfaToc(SEXP)’: readBfaToc.cc:35:19: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] (void) fread( seq_name, sizeof(char), name_len, fp ); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ readBfaToc.cc:36:19: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] (void) fread( &seq_ori_len, sizeof(int), 1, fp ); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ readBfaToc.cc:37:19: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] (void) fread( &seq_len, sizeof(int), 1, fp ); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_LIBZ=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DSIZEOF_UNSIGNED_LONG=4 -fpic -g -O2 -fdebug-prefix-map=/build/r-base-h8QLYb/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c read_maq_map.cc -o read_maq_map.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-h8QLYb/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sampler.c -o sampler.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-h8QLYb/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c trim.c -o trim.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-h8QLYb/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c util.c -o util.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-h8QLYb/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c xsnap.c -o xsnap.o g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o ShortRead.so Biostrings_stubs.o IRanges_stubs.o R_init_ShortRead.o S4Vectors_stubs.o XVector_stubs.o alphabet.o io.o io_bowtie.o io_soap.o readBfaToc.o read_maq_map.o sampler.o trim.o util.o xsnap.o -lz -fopenmp -L/usr/lib/R/lib -lR make[1]: Leaving directory '/<>/src' make[1]: Entering directory '/<>/src' make[1]: Leaving directory '/<>/src' installing to /<>/debian/r-bioc-shortread/usr/lib/R/site-library/ShortRead/libs ** R ** inst ** byte-compile and prepare package for lazy loading code for methods in class “ShortReadFile” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?) code for methods in class “FastqFileReader” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?) code for methods in class “QAData” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?) code for methods in class “Snapshot” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?) code for methods in class “SpTrellis” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?) code for methods in class “FastqSampler” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?) code for methods in class “FastqStreamer” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?) ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (ShortRead) I: Using r-bioc-biocgenerics for Depends:BiocGenerics (>= 0.23.3) I: Using r-bioc-biocparallel for Depends:BiocParallel I: Using r-bioc-biostrings for Depends:Biostrings (>= 2.47.6) I: Using r-bioc-rsamtools for Depends:Rsamtools (>= 1.31.2) I: Using r-bioc-genomicalignments for Depends:GenomicAlignments (>= 1.15.6) I: Using r-cran-runit for Recommends:runit W: Cannot find a debian package for Suggests:BiocStyle I: Using r-bioc-biomart for Suggests:biomaRt I: Using r-bioc-genomicfeatures for Suggests:GenomicFeatures W: Cannot find a debian package for Suggests:yeastNagalakshmi I: Using r-bioc-biobase for Imports:Biobase I: Using r-bioc-s4vectors for Imports:S4Vectors (>= 0.17.25) I: Using r-bioc-iranges for Imports:IRanges (>= 2.13.12) I: Using r-bioc-genomeinfodb for Imports:GenomeInfoDb (>= 1.15.2) I: Using r-bioc-genomicranges for Imports:GenomicRanges (>= 1.31.8) I: Using r-cran-hwriter for Imports:hwriter I: Using r-cran-lattice for Imports:lattice I: Using r-cran-latticeextra for Imports:latticeExtra Create lintian-override for package-contains-documentation-outside-usr-share-doc dh_install -a -O--buildsystem=R dh_installdocs -a -O--buildsystem=R dh_installchangelogs -a -O--buildsystem=R dh_installexamples -a -O--buildsystem=R dh_installman -a -O--buildsystem=R dh_installcatalogs -a -O--buildsystem=R dh_installcron -a -O--buildsystem=R dh_installdebconf -a -O--buildsystem=R dh_installemacsen -a -O--buildsystem=R dh_installifupdown -a -O--buildsystem=R dh_installinfo -a -O--buildsystem=R dh_installinit -a -O--buildsystem=R dh_installsystemd -a -O--buildsystem=R dh_installmenu -a -O--buildsystem=R dh_installmime -a -O--buildsystem=R dh_installmodules -a -O--buildsystem=R dh_installlogcheck -a -O--buildsystem=R dh_installlogrotate -a -O--buildsystem=R dh_installpam -a -O--buildsystem=R dh_installppp -a -O--buildsystem=R dh_installudev -a -O--buildsystem=R dh_installgsettings -a -O--buildsystem=R dh_bugfiles -a -O--buildsystem=R dh_ucf -a -O--buildsystem=R dh_lintian -a -O--buildsystem=R dh_gconf -a -O--buildsystem=R dh_icons -a -O--buildsystem=R dh_perl -a -O--buildsystem=R dh_usrlocal -a -O--buildsystem=R dh_link -a -O--buildsystem=R dh_installwm -a -O--buildsystem=R dh_installxfonts -a -O--buildsystem=R dh_strip_nondeterminism -a -O--buildsystem=R dh_compress -a -O--buildsystem=R dh_fixperms -a -O--buildsystem=R dh_missing -a -O--buildsystem=R dh_strip -a -O--buildsystem=R dh_makeshlibs -a -O--buildsystem=R dh_shlibdeps -a -O--buildsystem=R dh_installdeb -a -O--buildsystem=R dh_gencontrol -a -O--buildsystem=R dh_md5sums -a -O--buildsystem=R dh_builddeb -a -O--buildsystem=R INFO: pkgstriptranslations version 143 INFO: pkgstriptranslations version 143 pkgstriptranslations: processing r-bioc-shortread (in debian/r-bioc-shortread); do_strip: , oemstrip: pkgstriptranslations: processing r-bioc-shortread-dbgsym (in debian/.debhelper/r-bioc-shortread/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/r-bioc-shortread/DEBIAN/control, package r-bioc-shortread, directory debian/r-bioc-shortread pkgstripfiles: processing control file: debian/.debhelper/r-bioc-shortread/dbgsym-root/DEBIAN/control, package r-bioc-shortread-dbgsym, directory debian/.debhelper/r-bioc-shortread/dbgsym-root dpkg-deb: building package 'r-bioc-shortread-dbgsym' in 'debian/.debhelper/scratch-space/build-r-bioc-shortread/r-bioc-shortread-dbgsym_1.40.0-1_armhf.deb'. pkgstripfiles: Truncating usr/share/doc/r-bioc-shortread/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package r-bioc-shortread ... pkgstripfiles: No PNG files. dpkg-deb: building package 'r-bioc-shortread' in '../r-bioc-shortread_1.40.0-1_armhf.deb'. Renaming r-bioc-shortread-dbgsym_1.40.0-1_armhf.deb to r-bioc-shortread-dbgsym_1.40.0-1_armhf.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../r-bioc-shortread_1.40.0-1_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build r-bioc-shortread-1.40.0 dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20181112-1121 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ r-bioc-shortread_1.40.0-1_armhf.changes: ---------------------------------------- Format: 1.8 Date: Mon, 12 Nov 2018 08:02:46 +0100 Source: r-bioc-shortread Binary: r-bioc-shortread Architecture: armhf Version: 1.40.0-1 Distribution: disco-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Dylan Aïssi Description: r-bioc-shortread - GNU R classes and methods for high-throughput short-read sequenci Changes: r-bioc-shortread (1.40.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.2.1 Checksums-Sha1: f64341d55d57348f1ac99611d6a3af845ad31d02 164508 r-bioc-shortread-dbgsym_1.40.0-1_armhf.ddeb 6e4c40fa08f66a8220ddb938b8b58438309a200d 10222 r-bioc-shortread_1.40.0-1_armhf.buildinfo b554f2b3e60a6dfce00a4a819a5d4d7e82a0f189 5012148 r-bioc-shortread_1.40.0-1_armhf.deb Checksums-Sha256: da80f51b913f77d6666034a32682a3398623f45518b084dc4aea2d179aea6764 164508 r-bioc-shortread-dbgsym_1.40.0-1_armhf.ddeb 64d3a7771d6526db8948bc107f902fffb1a7aa7a3e5ae727cc134f425a32456f 10222 r-bioc-shortread_1.40.0-1_armhf.buildinfo 77b0841710197b730eb731edea75536a9458efb26c2fd99473bc3235ea5f6cfd 5012148 r-bioc-shortread_1.40.0-1_armhf.deb Files: d0275fd88ea28a06696c0c47ceace24b 164508 debug optional r-bioc-shortread-dbgsym_1.40.0-1_armhf.ddeb 180be2a26645d0f3377c77ffd4479ac4 10222 gnu-r optional r-bioc-shortread_1.40.0-1_armhf.buildinfo 0c567fe3ff20de91925f105520d01755 5012148 gnu-r optional r-bioc-shortread_1.40.0-1_armhf.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ r-bioc-shortread_1.40.0-1_armhf.deb ----------------------------------- new debian package, version 2.0. size 5012148 bytes: control archive=4200 bytes. 1332 bytes, 19 lines control 10890 bytes, 114 lines md5sums Package: r-bioc-shortread Version: 1.40.0-1 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian R Packages Maintainers Installed-Size: 7296 Depends: r-base-core (>= 3.5.1-1build1), r-api-3.5, r-bioc-biocgenerics (>= 0.23.3), r-bioc-biocparallel, r-bioc-biostrings (>= 2.47.6), r-bioc-rsamtools (>= 1.31.2), r-bioc-genomicalignments (>= 1.15.6), r-bioc-biobase, r-bioc-s4vectors (>= 0.17.25), r-bioc-iranges (>= 2.13.12), r-bioc-genomeinfodb (>= 1.15.2), r-bioc-genomicranges (>= 1.31.8), r-cran-hwriter, r-cran-lattice, r-cran-latticeextra, libc6 (>= 2.7), libgcc1 (>= 1:3.5), libstdc++6 (>= 5.2), zlib1g (>= 1:1.1.4) Recommends: r-cran-runit Suggests: r-bioc-biomart, r-bioc-genomicfeatures Section: gnu-r Priority: optional Homepage: https://bioconductor.org/packages/ShortRead/ Description: GNU R classes and methods for high-throughput short-read sequencing data This BioConductor module is a package for input, quality assessment, manipulation and output of high-throughput sequencing data. ShortRead is provided in the R and Bioconductor environments, allowing ready access to additional facilities for advanced statistical analysis, data transformation, visualization and integration with diverse genomic resources. drwxr-xr-x root/root 0 2018-11-12 07:02 ./ drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/ drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/lib/ drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/lib/R/ drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/lib/R/site-library/ drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/ -rw-r--r-- root/root 1158 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/CITATION -rw-r--r-- root/root 1493 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/DESCRIPTION -rw-r--r-- root/root 5917 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/INDEX drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/Meta/ -rw-r--r-- root/root 5599 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/Meta/Rd.rds -rw-r--r-- root/root 113 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/Meta/features.rds -rw-r--r-- root/root 5756 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/Meta/hsearch.rds -rw-r--r-- root/root 4164 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/Meta/links.rds -rw-r--r-- root/root 847 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/Meta/nsInfo.rds -rw-r--r-- root/root 1482 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/Meta/package.rds -rw-r--r-- root/root 262 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/Meta/vignette.rds -rw-r--r-- root/root 1147 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/NAMESPACE -rw-r--r-- root/root 12433 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/NEWS drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/R/ -rw-r--r-- root/root 1056 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/R/ShortRead -rw-r--r-- root/root 2211091 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/R/ShortRead.rdb -rw-r--r-- root/root 12074 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/R/ShortRead.rdx drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/doc/ -rw-r--r-- root/root 5961 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/doc/Overview.R -rw-r--r-- root/root 15627 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/doc/Overview.Rnw -rw-r--r-- root/root 175760 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/doc/Overview.pdf -rw-r--r-- root/root 1355 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/doc/index.html drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/extdata/ drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/extdata/Data/ drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/extdata/Data/C1-36Firecrest/ drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/extdata/Data/C1-36Firecrest/Bustard/ drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/extdata/Data/C1-36Firecrest/Bustard/GERALD/ -rw-r--r-- root/root 31740 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/extdata/Data/C1-36Firecrest/Bustard/GERALD/s_1_sequence.txt -rw-r--r-- root/root 121368 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/extdata/Data/C1-36Firecrest/Bustard/GERALD/s_2_export.txt -rw-r--r-- root/root 90912 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/extdata/Data/C1-36Firecrest/Bustard/GERALD/s_5_0001_realign.txt -rw-r--r-- root/root 184320 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/extdata/Data/C1-36Firecrest/Bustard/s_1_0001_prb.txt -rw-r--r-- root/root 12452 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/extdata/Data/C1-36Firecrest/Bustard/s_1_0001_seq.txt -rw-r--r-- root/root 21534 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/extdata/Data/C1-36Firecrest/Bustard/s_1_1_0001_qseq.txt -rw-r--r-- root/root 261216 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/extdata/Data/C1-36Firecrest/s_1_0001_int.txt -rw-r--r-- root/root 261028 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/extdata/Data/C1-36Firecrest/s_1_0001_nse.txt drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/extdata/E-MTAB-1147/ -rw-r--r-- root/root 1408740 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/extdata/E-MTAB-1147/ERR127302_1_subset.fastq.gz -rw-r--r-- root/root 1402841 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/extdata/E-MTAB-1147/ERR127302_2_subset.fastq.gz drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/extdata/bowtie/ -rw-r--r-- root/root 117004 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/extdata/bowtie/s_1_aligned_bowtie.txt drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/extdata/maq/ -rw-r--r-- root/root 131501 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/extdata/maq/out.aln.1.txt -rw-r--r-- root/root 133413 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/extdata/maq/out.aln.2.txt drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/help/ -rw-r--r-- root/root 20812 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/help/AnIndex -rw-r--r-- root/root 302282 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/help/ShortRead.rdb -rw-r--r-- root/root 1520 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/help/ShortRead.rdx -rw-r--r-- root/root 4233 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/help/aliases.rds -rw-r--r-- root/root 644 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/help/paths.rds drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/html/ -rw-r--r-- root/root 66173 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/html/00Index.html -rw-r--r-- root/root 1335 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/html/R.css drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/libs/ -rw-r--r-- root/root 84012 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/libs/ShortRead.so drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/script/ -rw-r--r-- root/root 308 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/script/qa-test.R drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/template/ -rw-r--r-- root/root 671 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/template/0000-Header.html -rw-r--r-- root/root 578 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/template/1000-Overview.html -rw-r--r-- root/root 140 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/template/1100-Overview-SolexaRealign.html -rw-r--r-- root/root 1177 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/template/2000-RunSummary.html -rw-r--r-- root/root 1998 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/template/3000-ReadDistribution.html -rw-r--r-- root/root 1209 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/template/4000-CycleSpecific.html -rw-r--r-- root/root 2439 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/template/5000-PerTile.html -rw-r--r-- root/root 342 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/template/6000-Alignment.html -rw-r--r-- root/root 257 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/template/7000-MultipleAlignment.html -rw-r--r-- root/root 249 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/template/8000-DepthOfCoverage.html -rw-r--r-- root/root 520 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/template/9000-AdapterContamination.html -rw-r--r-- root/root 108 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/template/9999-Footer.html -rw-r--r-- root/root 575 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/template/QA.css -rw-r--r-- root/root 402 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/template/QAAdapterContamination.html -rw-r--r-- root/root 146 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/template/QAFiltered.html -rw-r--r-- root/root 90 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/template/QAFlagged.html -rw-r--r-- root/root 108 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/template/QAFooter.html -rw-r--r-- root/root 155 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/template/QAFrequentSequence.html -rw-r--r-- root/root 670 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/template/QAHeader.html -rw-r--r-- root/root 336 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/template/QANucleotideByCycle.html -rw-r--r-- root/root 207 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/template/QANucleotideUse.html -rw-r--r-- root/root 654 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/template/QAQualityByCycle.html -rw-r--r-- root/root 216 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/template/QAQualityUse.html -rw-r--r-- root/root 279 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/template/QAReadQuality.html -rw-r--r-- root/root 1276 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/template/QASequenceUse.html -rw-r--r-- root/root 202 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/template/QASources.html drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/template/image/ -rw-r--r-- root/root 7692 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/template/image/bioclogo-small.gif -rw-r--r-- root/root 7073 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/template/qa_solexa.Rnw drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/ drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/cases/ -rw-r--r-- root/root 19136 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/cases/PE_export.txt.gz -rw-r--r-- root/root 475 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/cases/s_1_0001_int_head.txt.p -rw-r--r-- root/root 475 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/cases/s_1_0001_nse_head.txt.p -rw-r--r-- root/root 80 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/cases/s_1_0001_pos_head.txt -rw-r--r-- root/root 79211 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/cases/s_1_results_head.txt -rw-r--r-- root/root 250 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/cases/s_1_sequence.8_lines_illegal_nucleotide.txt -rw-r--r-- root/root 240 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/cases/s_1_sequence.8_lines_read_mismatch.txt -rw-r--r-- root/root 242 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/cases/s_1_sequence.8_lines_read_quality_mismatch.txt -rw-r--r-- root/root 275 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/cases/s_1_sequence.9_lines.txt -rw-r--r-- root/root 31740 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/cases/s_1_sequence.txt -rw-r--r-- root/root 1408 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/cases/s_2_0001_realign_3col_head.txt -rw-r--r-- root/root 6609 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/cases/s_2_0001_realign_head.txt -rw-r--r-- root/root 1242 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/cases/s_2_export_run_as_factor.txt -rw-r--r-- root/root 945 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/cases/s_2_export_toIUPAC.txt -rw-r--r-- root/root 150 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/cases/sanger.fastq -rw-r--r-- root/root 2543 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/cases/soap.txt -rw-r--r-- root/root 174 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/cases/solexa.fastq -rw-r--r-- root/root 11481 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/test_AlignedRead.R -rw-r--r-- root/root 521 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/test_AllClasses.R -rw-r--r-- root/root 758 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/test_FastqFile.R -rw-r--r-- root/root 1194 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/test_Intensity.R -rw-r--r-- root/root 1661 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/test_SRError.R -rw-r--r-- root/root 7356 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/test_SRFilter.R -rw-r--r-- root/root 3126 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/test_SRFilterResult.R -rw-r--r-- root/root 568 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/test_SRList.R -rw-r--r-- root/root 459 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/test_SRVector.R -rw-r--r-- root/root 1150 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/test_ShortRead.R -rw-r--r-- root/root 8698 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/test_ShortReadQ.R -rw-r--r-- root/root 3244 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/test_SolexaIntensity.R -rw-r--r-- root/root 1659 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/test_append.R -rw-r--r-- root/root 2108 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/test_coverage.R -rw-r--r-- root/root 1152 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/test_filterFastq.R -rw-r--r-- root/root 4921 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/test_functions.R -rw-r--r-- root/root 1195 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/test_qa.R -rw-r--r-- root/root 1140 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/test_readPrb.R -rw-r--r-- root/root 1346 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/test_readQseq.R -rw-r--r-- root/root 2714 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/test_readXStringColumns.R -rw-r--r-- root/root 1054 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/test_renew.R -rw-r--r-- root/root 1783 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/test_trimEnds.R -rw-r--r-- root/root 2519 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/test_trimTails.R -rw-r--r-- root/root 1186 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/test_writeFastq.R drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/share/ drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/share/doc/r-bioc-shortread/ -rw-r--r-- root/root 373 2018-11-12 07:02 ./usr/share/doc/r-bioc-shortread/README.test -rw-r--r-- root/root 714 2018-11-12 07:02 ./usr/share/doc/r-bioc-shortread/changelog.Debian.gz -rw-r--r-- root/root 6310 2018-11-12 07:02 ./usr/share/doc/r-bioc-shortread/copyright drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/share/lintian/ drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 155 2018-11-12 07:02 ./usr/share/lintian/overrides/r-bioc-shortread +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build-Space: 21892 Build-Time: 146 Distribution: disco-proposed Host Architecture: armhf Install-Time: 65 Job: r-bioc-shortread_1.40.0-1.dsc Machine Architecture: arm64 Package: r-bioc-shortread Package-Time: 215 Source-Version: 1.40.0-1 Space: 21892 Status: successful Version: 1.40.0-1 -------------------------------------------------------------------------------- Finished at 20181112-1121 Build needed 00:03:35, 21892k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=disco --arch=armhf PACKAGEBUILD-15652327 Scanning for processes to kill in build PACKAGEBUILD-15652327