https://launchpad.net/ubuntu/+source/r-bioc-shortread/1.40.0-1/+build/15652326 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux bos02-arm64-011 4.4.0-138-generic #164-Ubuntu SMP Tue Oct 2 17:15:48 UTC 2018 aarch64 Buildd toolchain package versions: launchpad-buildd_165 python-lpbuildd_165 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.5 dpkg-dev_1.18.4ubuntu1.5 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 12 Nov 11:15:31 ntpdate[1822]: adjust time server 10.211.37.1 offset -0.171868 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=disco --arch=arm64 PACKAGEBUILD-15652326 /home/buildd/filecache-default/bf137a8dadabbe066906202a7cb9d7a8e3a99968 Creating target for build PACKAGEBUILD-15652326 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=disco --arch=arm64 PACKAGEBUILD-15652326 Starting target for build PACKAGEBUILD-15652326 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=disco --arch=arm64 PACKAGEBUILD-15652326 'deb http://ftpmaster.internal/ubuntu disco main universe' 'deb http://ftpmaster.internal/ubuntu disco-security main universe' 'deb http://ftpmaster.internal/ubuntu disco-updates main universe' 'deb http://ftpmaster.internal/ubuntu disco-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-15652326 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=disco --arch=arm64 PACKAGEBUILD-15652326 Updating target for build PACKAGEBUILD-15652326 Get:1 http://ftpmaster.internal/ubuntu disco InRelease [243 kB] Get:2 http://ftpmaster.internal/ubuntu disco-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu disco-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu disco-proposed InRelease [93.2 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main arm64 Packages [978 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main Translation-en [514 kB] Get:7 http://ftpmaster.internal/ubuntu disco/universe arm64 Packages [8599 kB] Get:8 http://ftpmaster.internal/ubuntu disco/universe Translation-en [5100 kB] Get:9 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 Packages [88.6 kB] Get:10 http://ftpmaster.internal/ubuntu disco-proposed/main Translation-en [58.5 kB] Get:11 http://ftpmaster.internal/ubuntu disco-proposed/universe arm64 Packages [434 kB] Get:12 http://ftpmaster.internal/ubuntu disco-proposed/universe Translation-en [255 kB] Fetched 16.5 MB in 6s (2935 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libgdbm5 libperl5.26 perl-modules-5.26 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libgdbm6 libperl5.28 perl-modules-5.28 The following packages will be upgraded: base-files binutils binutils-aarch64-linux-gnu binutils-common cpp cpp-8 dash dmsetup fakeroot findutils g++ g++-8 gcc gcc-8 gcc-8-base hostname init init-system-helpers libapparmor1 libasan5 libatomic1 libaudit-common libaudit1 libbinutils libcap-ng0 libcc1-0 libdb5.3 libdevmapper1.02.1 libfakeroot libgcc-8-dev libgcc1 libgcrypt20 libgdbm-compat4 libgnutls30 libgomp1 libgpg-error0 libitm1 libkmod2 liblsan0 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsqlite3-0 libstdc++-8-dev libstdc++6 libsystemd0 libtsan0 libubsan1 libudev1 linux-libc-dev lockfile-progs perl perl-base sed systemd systemd-sysv tzdata 58 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 41.2 MB of archives. After this operation, 48.4 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu disco/main arm64 base-files arm64 10.1ubuntu8 [60.1 kB] Get:2 http://ftpmaster.internal/ubuntu disco/main arm64 dash arm64 0.5.10.2-1 [88.0 kB] Get:3 http://ftpmaster.internal/ubuntu disco/main arm64 findutils arm64 4.6.0+git+20181018-1 [290 kB] Get:4 http://ftpmaster.internal/ubuntu disco/main arm64 hostname arm64 3.21 [10.9 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main arm64 perl-modules-5.28 all 5.28.0-3 [2818 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main arm64 libgdbm6 arm64 1.18.1-1 [26.8 kB] Get:7 http://ftpmaster.internal/ubuntu disco/main arm64 libgdbm-compat4 arm64 1.18.1-1 [6016 B] Get:8 http://ftpmaster.internal/ubuntu disco/main arm64 libperl5.28 arm64 5.28.0-3 [3667 kB] Get:9 http://ftpmaster.internal/ubuntu disco/main arm64 perl arm64 5.28.0-3 [204 kB] Get:10 http://ftpmaster.internal/ubuntu disco/main arm64 perl-base arm64 5.28.0-3 [1398 kB] Get:11 http://ftpmaster.internal/ubuntu disco/main arm64 libdb5.3 arm64 5.3.28+dfsg1-0.2 [616 kB] Get:12 http://ftpmaster.internal/ubuntu disco/main arm64 sed arm64 4.5-2 [182 kB] Get:13 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 init-system-helpers all 1.55 [38.5 kB] Get:14 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 systemd-sysv arm64 239-7ubuntu10.1 [9404 B] Get:15 http://ftpmaster.internal/ubuntu disco/main arm64 libapparmor1 arm64 2.12-4ubuntu10 [29.1 kB] Get:16 http://ftpmaster.internal/ubuntu disco/main arm64 libaudit-common all 1:2.8.3-1ubuntu3 [4068 B] Get:17 http://ftpmaster.internal/ubuntu disco/main arm64 libcap-ng0 arm64 0.7.9-1build1 [10.5 kB] Get:18 http://ftpmaster.internal/ubuntu disco/main arm64 libaudit1 arm64 1:2.8.3-1ubuntu3 [38.1 kB] Get:19 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libgnutls30 arm64 3.6.4-2ubuntu2 [686 kB] Get:20 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libgpg-error0 arm64 1.32-3 [53.4 kB] Get:21 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libkmod2 arm64 25-1ubuntu1.1 [38.7 kB] Get:22 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 systemd arm64 239-7ubuntu10.1 [2757 kB] Get:23 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libsystemd0 arm64 239-7ubuntu10.1 [195 kB] Get:24 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 init arm64 1.55 [6476 B] Get:25 http://ftpmaster.internal/ubuntu disco/main arm64 libcc1-0 arm64 8.2.0-9ubuntu1 [36.3 kB] Get:26 http://ftpmaster.internal/ubuntu disco/main arm64 libgomp1 arm64 8.2.0-9ubuntu1 [69.6 kB] Get:27 http://ftpmaster.internal/ubuntu disco/main arm64 libitm1 arm64 8.2.0-9ubuntu1 [24.4 kB] Get:28 http://ftpmaster.internal/ubuntu disco/main arm64 libatomic1 arm64 8.2.0-9ubuntu1 [9124 B] Get:29 http://ftpmaster.internal/ubuntu disco/main arm64 libasan5 arm64 8.2.0-9ubuntu1 [336 kB] Get:30 http://ftpmaster.internal/ubuntu disco/main arm64 liblsan0 arm64 8.2.0-9ubuntu1 [121 kB] Get:31 http://ftpmaster.internal/ubuntu disco/main arm64 libtsan0 arm64 8.2.0-9ubuntu1 [269 kB] Get:32 http://ftpmaster.internal/ubuntu disco/main arm64 libubsan1 arm64 8.2.0-9ubuntu1 [113 kB] Get:33 http://ftpmaster.internal/ubuntu disco/main arm64 gcc-8-base arm64 8.2.0-9ubuntu1 [18.6 kB] Get:34 http://ftpmaster.internal/ubuntu disco/main arm64 libstdc++6 arm64 8.2.0-9ubuntu1 [372 kB] Get:35 http://ftpmaster.internal/ubuntu disco/main arm64 g++-8 arm64 8.2.0-9ubuntu1 [6548 kB] Get:36 http://ftpmaster.internal/ubuntu disco/main arm64 libstdc++-8-dev arm64 8.2.0-9ubuntu1 [1513 kB] Get:37 http://ftpmaster.internal/ubuntu disco/main arm64 libgcc-8-dev arm64 8.2.0-9ubuntu1 [857 kB] Get:38 http://ftpmaster.internal/ubuntu disco/main arm64 gcc-8 arm64 8.2.0-9ubuntu1 [6470 kB] Get:39 http://ftpmaster.internal/ubuntu disco/main arm64 cpp-8 arm64 8.2.0-9ubuntu1 [5713 kB] Get:40 http://ftpmaster.internal/ubuntu disco/main arm64 libgcc1 arm64 1:8.2.0-9ubuntu1 [34.3 kB] Get:41 http://ftpmaster.internal/ubuntu disco/main arm64 libbinutils arm64 2.31.1-7ubuntu1 [462 kB] Get:42 http://ftpmaster.internal/ubuntu disco/main arm64 binutils-common arm64 2.31.1-7ubuntu1 [194 kB] Get:43 http://ftpmaster.internal/ubuntu disco/main arm64 binutils arm64 2.31.1-7ubuntu1 [3364 B] Get:44 http://ftpmaster.internal/ubuntu disco/main arm64 binutils-aarch64-linux-gnu arm64 2.31.1-7ubuntu1 [2173 kB] Get:45 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libgcrypt20 arm64 1.8.4-3ubuntu1 [350 kB] Get:46 http://ftpmaster.internal/ubuntu disco/main arm64 libselinux1 arm64 2.8-1build2 [64.9 kB] Get:47 http://ftpmaster.internal/ubuntu disco/main arm64 libsemanage-common all 2.8-1build2 [6892 B] Get:48 http://ftpmaster.internal/ubuntu disco/main arm64 libsemanage1 arm64 2.8-1build2 [79.7 kB] Get:49 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libudev1 arm64 239-7ubuntu10.1 [50.1 kB] Get:50 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libseccomp2 arm64 2.3.3-3ubuntu2 [38.6 kB] Get:51 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libdevmapper1.02.1 arm64 2:1.02.145-4.1ubuntu4 [109 kB] Get:52 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 dmsetup arm64 2:1.02.145-4.1ubuntu4 [67.6 kB] Get:53 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libsqlite3-0 arm64 3.25.3-1 [490 kB] Get:54 http://ftpmaster.internal/ubuntu disco/main arm64 tzdata all 2018g-1 [188 kB] Get:55 http://ftpmaster.internal/ubuntu disco/main arm64 g++ arm64 4:8.2.0-2ubuntu2 [1592 B] Get:56 http://ftpmaster.internal/ubuntu disco/main arm64 gcc arm64 4:8.2.0-2ubuntu2 [5232 B] Get:57 http://ftpmaster.internal/ubuntu disco/main arm64 cpp arm64 4:8.2.0-2ubuntu2 [27.6 kB] Get:58 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libfakeroot arm64 1.23-1 [25.2 kB] Get:59 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 fakeroot arm64 1.23-1 [62.0 kB] Get:60 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 linux-libc-dev arm64 4.18.0-11.12 [1019 kB] Get:61 http://ftpmaster.internal/ubuntu disco/main arm64 lockfile-progs arm64 0.1.18 [9748 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 41.2 MB in 3s (16.3 MB/s) (Reading database ... 12627 files and directories currently installed.) Preparing to unpack .../base-files_10.1ubuntu8_arm64.deb ... Unpacking base-files (10.1ubuntu8) over (10.1ubuntu7) ... Setting up base-files (10.1ubuntu8) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... 12627 files and directories currently installed.) Preparing to unpack .../dash_0.5.10.2-1_arm64.deb ... Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' Unpacking dash (0.5.10.2-1) over (0.5.8-2.10) ... Setting up dash (0.5.10.2-1) ... Removing 'diversion of /bin/sh to /bin/sh.distrib by bash' Adding 'diversion of /bin/sh to /bin/sh.distrib by dash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' (Reading database ... 12627 files and directories currently installed.) Preparing to unpack .../findutils_4.6.0+git+20181018-1_arm64.deb ... Unpacking findutils (4.6.0+git+20181018-1) over (4.6.0+git+20180808-2) ... Setting up findutils (4.6.0+git+20181018-1) ... (Reading database ... 12627 files and directories currently installed.) Preparing to unpack .../hostname_3.21_arm64.deb ... Unpacking hostname (3.21) over (3.20) ... Setting up hostname (3.21) ... (Reading database ... 12627 files and directories currently installed.) Preparing to unpack .../0-perl_5.28.0-3_arm64.deb ... Unpacking perl (5.28.0-3) over (5.26.2-7) ... 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RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-15652326 arm64 disco-proposed -c chroot:build-PACKAGEBUILD-15652326 --arch=arm64 --dist=disco-proposed --nolog r-bioc-shortread_1.40.0-1.dsc Initiating build PACKAGEBUILD-15652326 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-138-generic #164-Ubuntu SMP Tue Oct 2 17:15:48 UTC 2018 aarch64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-arm64-011.buildd +==============================================================================+ | r-bioc-shortread 1.40.0-1 (arm64) 12 Nov 2018 11:16 | +==============================================================================+ Package: r-bioc-shortread Version: 1.40.0-1 Source Version: 1.40.0-1 Distribution: disco-proposed Machine Architecture: arm64 Host Architecture: arm64 Build Architecture: arm64 I: NOTICE: Log filtering will replace 'build/r-bioc-shortread-AUFnbh/r-bioc-shortread-1.40.0' with '<>' I: NOTICE: Log filtering will replace 'build/r-bioc-shortread-AUFnbh' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-15652326/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- r-bioc-shortread_1.40.0-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-bAWeLW/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-bAWeLW/apt_archive ./ InRelease Get:2 copy:/<>/resolver-bAWeLW/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-bAWeLW/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-bAWeLW/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-bAWeLW/apt_archive ./ Packages [525 B] Fetched 2858 B in 0s (87.5 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libgdbm5 libperl5.26 perl-modules-5.26 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-bAWeLW/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14518 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11~), dh-r, r-base-dev, r-bioc-biocgenerics (>= 0.23.3), r-bioc-biocparallel, r-bioc-biostrings (>= 2.47.6), r-bioc-rsamtools (>= 1.31.2), r-bioc-genomicalignments (>= 1.15.6), r-bioc-biobase, r-bioc-s4vectors (>= 0.17.25), r-bioc-iranges (>= 2.13.12), r-bioc-genomeinfodb (>= 1.15.2), r-bioc-genomicranges (>= 1.31.8), r-cran-hwriter, r-cran-lattice, r-cran-latticeextra, r-bioc-xvector Filtered Build-Depends: debhelper (>= 11~), dh-r, r-base-dev, r-bioc-biocgenerics (>= 0.23.3), r-bioc-biocparallel, r-bioc-biostrings (>= 2.47.6), r-bioc-rsamtools (>= 1.31.2), r-bioc-genomicalignments (>= 1.15.6), r-bioc-biobase, r-bioc-s4vectors (>= 0.17.25), r-bioc-iranges (>= 2.13.12), r-bioc-genomeinfodb (>= 1.15.2), r-bioc-genomicranges (>= 1.31.8), r-cran-hwriter, r-cran-lattice, r-cran-latticeextra, r-bioc-xvector dpkg-deb: building package 'sbuild-build-depends-r-bioc-shortread-dummy' in '/<>/resolver-7bLiL4/apt_archive/sbuild-build-depends-r-bioc-shortread-dummy.deb'. Ign:1 copy:/<>/resolver-7bLiL4/apt_archive ./ InRelease Get:2 copy:/<>/resolver-7bLiL4/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-7bLiL4/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-7bLiL4/apt_archive ./ Sources [369 B] Get:5 copy:/<>/resolver-7bLiL4/apt_archive ./ Packages [689 B] Fetched 3177 B in 0s (133 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install r-bioc-shortread build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libgdbm5 libperl5.26 perl-modules-5.26 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-8 gir1.2-glib-2.0 gir1.2-harfbuzz-0.0 groff-base icu-devtools intltool-debian libarchive-zip-perl libasn1-8-heimdal libblas-dev libblas3 libbsd0 libbz2-dev libcairo2 libcroco3 libcurl4 libdatrie1 libelf1 libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-8-dev libgfortran5 libgirepository-1.0-1 libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libgraphite2-3 libgraphite2-dev libgssapi-krb5-2 libgssapi3-heimdal libharfbuzz-dev libharfbuzz-gobject0 libharfbuzz-icu0 libharfbuzz0b libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libice6 libicu-dev libicu-le-hb-dev libicu-le-hb0 libicu60 libiculx60 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 libldap-common liblzma-dev libmagic-mgc libmagic1 libmpdec2 libncurses-dev libncurses5-dev libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib libreadline-dev libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libtool libwebp6 libwind0-heimdal libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db mime-support pkg-config po-debconf python3 python3-distutils python3-lib2to3 python3-minimal python3.7 python3.7-minimal r-base-core r-base-dev r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biostrings r-bioc-delayedarray r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicranges r-bioc-iranges r-bioc-rsamtools r-bioc-s4vectors r-bioc-summarizedexperiment r-bioc-xvector r-cran-bitops r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-hwriter r-cran-lambda.r r-cran-lattice r-cran-latticeextra r-cran-matrix r-cran-matrixstats r-cran-rcolorbrewer r-cran-rcurl r-cran-snow ucf unzip x11-common xauth xdg-utils zip zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation debtags dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-doc gfortran-8-doc libgfortran5-dbg libcoarrays-dev groff liblapack-doc libglib2.0-doc libgdk-pixbuf2.0-bin | libgdk-pixbuf2.0-dev libxml2-utils libgraphite2-utils krb5-doc krb5-user icu-doc liblzma-doc ncurses-doc readline-doc tcl8.6 tk8.6 libtool-doc gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python3.7-venv python3.7-doc binfmt-support ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-foreach r-cran-bbmisc r-cran-rmpi r-bioc-variantannotation r-bioc-shortread r-cran-codetools r-cran-knitr r-bioc-bsgenome r-bioc-genomicfeatures r-bioc-rtracklayer r-bioc-gviz r-bioc-annotationhub r-bioc-graph r-cran-data.table r-cran-rmarkdown r-cran-jsonlite r-cran-testthat r-cran-shiny r-cran-base64enc r-cran-ggplot2 r-cran-xml r-cran-rsprng r-cran-rlecuyer Recommended packages: devscripts curl | wget | lynx bzip2-doc libarchive-cpio-perl shared-mime-info xdg-user-dirs krb5-locales libpng-tools publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl r-recommended r-doc-html r-cran-runit r-cran-batchjobs r-cran-doparallel r-bioc-genefilter r-bioc-shortread r-cran-digest r-bioc-annotate r-cran-testit r-cran-codetools r-cran-survival r-cran-testthat libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-8 gir1.2-glib-2.0 gir1.2-harfbuzz-0.0 groff-base icu-devtools intltool-debian libarchive-zip-perl libasn1-8-heimdal libblas-dev libblas3 libbsd0 libbz2-dev libcairo2 libcroco3 libcurl4 libdatrie1 libelf1 libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-8-dev libgfortran5 libgirepository-1.0-1 libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libgraphite2-3 libgraphite2-dev libgssapi-krb5-2 libgssapi3-heimdal libharfbuzz-dev libharfbuzz-gobject0 libharfbuzz-icu0 libharfbuzz0b libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libice6 libicu-dev libicu-le-hb-dev libicu-le-hb0 libicu60 libiculx60 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 libldap-common liblzma-dev libmagic-mgc libmagic1 libmpdec2 libncurses-dev libncurses5-dev libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib libreadline-dev libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libtool libwebp6 libwind0-heimdal libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db mime-support pkg-config po-debconf python3 python3-distutils python3-lib2to3 python3-minimal python3.7 python3.7-minimal r-base-core r-base-dev r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biostrings r-bioc-delayedarray r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicranges r-bioc-iranges r-bioc-rsamtools r-bioc-s4vectors r-bioc-summarizedexperiment r-bioc-xvector r-cran-bitops r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-hwriter r-cran-lambda.r r-cran-lattice r-cran-latticeextra r-cran-matrix r-cran-matrixstats r-cran-rcolorbrewer r-cran-rcurl r-cran-snow sbuild-build-depends-r-bioc-shortread-dummy ucf unzip x11-common xauth xdg-utils zip zlib1g-dev 0 upgraded, 183 newly installed, 0 to remove and 0 not upgraded. Need to get 130 MB of archives. After this operation, 335 MB of additional disk space will be used. 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1.5.0-2 [24.2 kB] Get:22 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 man-db arm64 2.8.4-3 [1017 kB] Get:23 http://ftpmaster.internal/ubuntu disco/main arm64 x11-common all 1:7.7+19ubuntu8 [22.5 kB] Get:24 http://ftpmaster.internal/ubuntu disco/main arm64 libice6 arm64 2:1.0.9-2 [33.7 kB] Get:25 http://ftpmaster.internal/ubuntu disco/main arm64 libsm6 arm64 2:1.2.2-1 [13.7 kB] Get:26 http://ftpmaster.internal/ubuntu disco/main arm64 libmagic-mgc arm64 1:5.34-2 [197 kB] Get:27 http://ftpmaster.internal/ubuntu disco/main arm64 libmagic1 arm64 1:5.34-2 [69.5 kB] Get:28 http://ftpmaster.internal/ubuntu disco/main arm64 file arm64 1:5.34-2 [22.9 kB] Get:29 http://ftpmaster.internal/ubuntu disco/main arm64 libglib2.0-0 arm64 2.58.1-2 [1106 kB] Get:30 http://ftpmaster.internal/ubuntu disco/main arm64 libgirepository-1.0-1 arm64 1.58.0-1build1 [74.7 kB] Get:31 http://ftpmaster.internal/ubuntu disco/main arm64 gir1.2-glib-2.0 arm64 1.58.0-1build1 [132 kB] Get:32 http://ftpmaster.internal/ubuntu disco/main arm64 libelf1 arm64 0.170-0.5.0ubuntu1 [43.4 kB] Get:33 http://ftpmaster.internal/ubuntu disco/main arm64 libfribidi0 arm64 1.0.5-3 [26.2 kB] Get:34 http://ftpmaster.internal/ubuntu disco/main arm64 libglib2.0-data all 2.58.1-2 [5476 B] Get:35 http://ftpmaster.internal/ubuntu disco/main arm64 libicu60 arm64 60.2-6ubuntu1 [7987 kB] Get:36 http://ftpmaster.internal/ubuntu disco/main arm64 libxml2 arm64 2.9.4+dfsg1-7ubuntu2 [562 kB] Get:37 http://ftpmaster.internal/ubuntu disco/main arm64 ucf all 3.0038 [50.5 kB] Get:38 http://ftpmaster.internal/ubuntu disco/main arm64 gettext-base arm64 0.19.8.1-9 [48.0 kB] Get:39 http://ftpmaster.internal/ubuntu disco/main arm64 libkrb5support0 arm64 1.16-2ubuntu1 [30.4 kB] Get:40 http://ftpmaster.internal/ubuntu disco/main arm64 libk5crypto3 arm64 1.16-2ubuntu1 [86.5 kB] Get:41 http://ftpmaster.internal/ubuntu disco/main arm64 libkeyutils1 arm64 1.5.9-9.3 [9512 B] Get:42 http://ftpmaster.internal/ubuntu disco/main arm64 libkrb5-3 arm64 1.16-2ubuntu1 [265 kB] Get:43 http://ftpmaster.internal/ubuntu disco/main arm64 libgssapi-krb5-2 arm64 1.16-2ubuntu1 [113 kB] Get:44 http://ftpmaster.internal/ubuntu disco/main arm64 libpsl5 arm64 0.20.2-2 [49.9 kB] Get:45 http://ftpmaster.internal/ubuntu disco/main arm64 libxmuu1 arm64 2:1.1.2-2 [9502 B] Get:46 http://ftpmaster.internal/ubuntu disco/main arm64 xauth arm64 1:1.0.10-1 [22.4 kB] Get:47 http://ftpmaster.internal/ubuntu disco/main arm64 libsigsegv2 arm64 2.12-2 [13.3 kB] Get:48 http://ftpmaster.internal/ubuntu disco/main arm64 m4 arm64 1.4.18-1ubuntu1 [194 kB] Get:49 http://ftpmaster.internal/ubuntu disco/main arm64 autoconf all 2.69-11 [322 kB] Get:50 http://ftpmaster.internal/ubuntu disco/main arm64 autotools-dev all 20180224.1 [39.6 kB] Get:51 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 automake all 1:1.16.1-4 [522 kB] Get:52 http://ftpmaster.internal/ubuntu disco/main arm64 autopoint all 0.19.8.1-9 [412 kB] Get:53 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 dctrl-tools arm64 2.24-3 [59.1 kB] Get:54 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libtool all 2.4.6-6 [195 kB] Get:55 http://ftpmaster.internal/ubuntu disco/main arm64 dh-autoreconf all 19 [16.1 kB] Get:56 http://ftpmaster.internal/ubuntu disco/main arm64 libarchive-zip-perl all 1.64-1 [84.9 kB] Get:57 http://ftpmaster.internal/ubuntu disco/main arm64 libfile-stripnondeterminism-perl all 0.45.0-1 [15.1 kB] Get:58 http://ftpmaster.internal/ubuntu disco/main arm64 dh-strip-nondeterminism all 0.45.0-1 [5128 B] Get:59 http://ftpmaster.internal/ubuntu disco/main arm64 dwz arm64 0.12-2 [68.1 kB] Get:60 http://ftpmaster.internal/ubuntu disco/main arm64 libcroco3 arm64 0.6.12-2 [68.2 kB] Get:61 http://ftpmaster.internal/ubuntu disco/main arm64 gettext arm64 0.19.8.1-9 [853 kB] Get:62 http://ftpmaster.internal/ubuntu disco/main arm64 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:63 http://ftpmaster.internal/ubuntu disco/main arm64 po-debconf all 1.0.20 [232 kB] Get:64 http://ftpmaster.internal/ubuntu disco/main arm64 debhelper all 11.3.2ubuntu1 [883 kB] Get:65 http://ftpmaster.internal/ubuntu disco/main arm64 zip arm64 3.0-11build1 [146 kB] Get:66 http://ftpmaster.internal/ubuntu disco/main arm64 unzip arm64 6.0-21ubuntu1 [149 kB] Get:67 http://ftpmaster.internal/ubuntu disco/main arm64 libpaper1 arm64 1.1.24+nmu5ubuntu1 [13.0 kB] Get:68 http://ftpmaster.internal/ubuntu disco/main arm64 libpaper-utils arm64 1.1.24+nmu5ubuntu1 [8178 B] Get:69 http://ftpmaster.internal/ubuntu disco/main arm64 xdg-utils all 1.1.3-1ubuntu2 [60.5 kB] Get:70 http://ftpmaster.internal/ubuntu disco/main arm64 libblas3 arm64 3.8.0-1build1 [89.8 kB] Get:71 http://ftpmaster.internal/ubuntu disco/main arm64 libfreetype6 arm64 2.8.1-2ubuntu2 [290 kB] Get:72 http://ftpmaster.internal/ubuntu disco/main arm64 fonts-dejavu-core all 2.37-1 [1041 kB] Get:73 http://ftpmaster.internal/ubuntu disco/main arm64 fontconfig-config all 2.13.0-5ubuntu3 [28.4 kB] Get:74 http://ftpmaster.internal/ubuntu disco/main arm64 libfontconfig1 arm64 2.13.0-5ubuntu3 [109 kB] Get:75 http://ftpmaster.internal/ubuntu disco/main arm64 libpixman-1-0 arm64 0.34.0-2 [115 kB] Get:76 http://ftpmaster.internal/ubuntu disco/main arm64 libxcb-render0 arm64 1.13.1-1 [14.5 kB] Get:77 http://ftpmaster.internal/ubuntu disco/main arm64 libxcb-shm0 arm64 1.13.1-1 [5632 B] Get:78 http://ftpmaster.internal/ubuntu disco/main arm64 libxrender1 arm64 1:0.9.10-1 [16.1 kB] Get:79 http://ftpmaster.internal/ubuntu disco/main arm64 libcairo2 arm64 1.16.0-1 [539 kB] Get:80 http://ftpmaster.internal/ubuntu disco/main arm64 libroken18-heimdal arm64 7.5.0+dfsg-2 [35.4 kB] Get:81 http://ftpmaster.internal/ubuntu disco/main arm64 libasn1-8-heimdal arm64 7.5.0+dfsg-2 [130 kB] Get:82 http://ftpmaster.internal/ubuntu disco/main arm64 libheimbase1-heimdal arm64 7.5.0+dfsg-2 [24.9 kB] Get:83 http://ftpmaster.internal/ubuntu disco/main arm64 libhcrypto4-heimdal arm64 7.5.0+dfsg-2 [75.2 kB] Get:84 http://ftpmaster.internal/ubuntu disco/main arm64 libwind0-heimdal arm64 7.5.0+dfsg-2 [46.9 kB] Get:85 http://ftpmaster.internal/ubuntu disco/main arm64 libhx509-5-heimdal arm64 7.5.0+dfsg-2 [88.5 kB] Get:86 http://ftpmaster.internal/ubuntu disco/main arm64 libkrb5-26-heimdal arm64 7.5.0+dfsg-2 [170 kB] Get:87 http://ftpmaster.internal/ubuntu disco/main arm64 libheimntlm0-heimdal arm64 7.5.0+dfsg-2 [13.4 kB] Get:88 http://ftpmaster.internal/ubuntu disco/main arm64 libgssapi3-heimdal arm64 7.5.0+dfsg-2 [79.3 kB] Get:89 http://ftpmaster.internal/ubuntu disco/main arm64 libsasl2-modules-db arm64 2.1.27~101-g0780600+dfsg-3ubuntu2 [13.4 kB] Get:90 http://ftpmaster.internal/ubuntu disco/main arm64 libsasl2-2 arm64 2.1.27~101-g0780600+dfsg-3ubuntu2 [43.1 kB] Get:91 http://ftpmaster.internal/ubuntu disco/main arm64 libldap-common all 2.4.46+dfsg-5ubuntu2 [16.6 kB] Get:92 http://ftpmaster.internal/ubuntu disco/main arm64 libldap-2.4-2 arm64 2.4.46+dfsg-5ubuntu2 [145 kB] Get:93 http://ftpmaster.internal/ubuntu disco/main arm64 libnghttp2-14 arm64 1.34.0-1 [75.9 kB] Get:94 http://ftpmaster.internal/ubuntu disco/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2 [49.8 kB] Get:95 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libcurl4 arm64 7.61.0-1ubuntu2.2 [199 kB] Get:96 http://ftpmaster.internal/ubuntu disco/main arm64 libjpeg-turbo8 arm64 2.0.0-0ubuntu2 [100 kB] Get:97 http://ftpmaster.internal/ubuntu disco/main arm64 libjpeg8 arm64 8c-2ubuntu8 [2198 B] Get:98 http://ftpmaster.internal/ubuntu disco/main arm64 libgfortran5 arm64 8.2.0-9ubuntu1 [308 kB] Get:99 http://ftpmaster.internal/ubuntu disco/main arm64 liblapack3 arm64 3.8.0-1build1 [1478 kB] Get:100 http://ftpmaster.internal/ubuntu disco/main arm64 fontconfig arm64 2.13.0-5ubuntu3 [169 kB] Get:101 http://ftpmaster.internal/ubuntu disco/main arm64 libthai-data all 0.1.28-1 [134 kB] Get:102 http://ftpmaster.internal/ubuntu disco/main arm64 libdatrie1 arm64 0.2.12-1 [15.9 kB] Get:103 http://ftpmaster.internal/ubuntu disco/main arm64 libthai0 arm64 0.1.28-1 [16.7 kB] Get:104 http://ftpmaster.internal/ubuntu disco/main arm64 libpango-1.0-0 arm64 1.42.4-3 [145 kB] Get:105 http://ftpmaster.internal/ubuntu disco/main arm64 libgraphite2-3 arm64 1.3.12-1 [68.7 kB] Get:106 http://ftpmaster.internal/ubuntu disco/main arm64 libharfbuzz0b arm64 1.9.0-1 [253 kB] Get:107 http://ftpmaster.internal/ubuntu disco/main arm64 libpangoft2-1.0-0 arm64 1.42.4-3 [33.2 kB] Get:108 http://ftpmaster.internal/ubuntu disco/main arm64 libpangocairo-1.0-0 arm64 1.42.4-3 [21.4 kB] Get:109 http://ftpmaster.internal/ubuntu disco/main arm64 libtcl8.6 arm64 8.6.8+dfsg-4 [783 kB] Get:110 http://ftpmaster.internal/ubuntu disco/main arm64 libjbig0 arm64 2.1-3.1build1 [24.0 kB] Get:111 http://ftpmaster.internal/ubuntu disco/main arm64 libwebp6 arm64 0.6.1-2 [155 kB] Get:112 http://ftpmaster.internal/ubuntu disco/main arm64 libtiff5 arm64 4.0.9+git181026-1 [146 kB] Get:113 http://ftpmaster.internal/ubuntu disco/main arm64 libxft2 arm64 2.3.2-2 [32.5 kB] Get:114 http://ftpmaster.internal/ubuntu disco/main arm64 libxss1 arm64 1:1.2.3-1 [8080 B] Get:115 http://ftpmaster.internal/ubuntu disco/main arm64 libtk8.6 arm64 8.6.8-4 [615 kB] Get:116 http://ftpmaster.internal/ubuntu disco/main arm64 libxt6 arm64 1:1.1.5-1 [128 kB] Get:117 http://ftpmaster.internal/ubuntu disco/universe arm64 r-base-core arm64 3.5.1-1build1 [23.6 MB] Get:118 http://ftpmaster.internal/ubuntu disco/main arm64 libgfortran-8-dev arm64 8.2.0-9ubuntu1 [355 kB] Get:119 http://ftpmaster.internal/ubuntu disco/main arm64 gfortran-8 arm64 8.2.0-9ubuntu1 [6110 kB] Get:120 http://ftpmaster.internal/ubuntu disco/main arm64 gfortran arm64 4:8.2.0-2ubuntu2 [1364 B] Get:121 http://ftpmaster.internal/ubuntu disco/main arm64 libblas-dev arm64 3.8.0-1build1 [92.3 kB] Get:122 http://ftpmaster.internal/ubuntu disco/main arm64 liblapack-dev arm64 3.8.0-1build1 [1511 kB] Get:123 http://ftpmaster.internal/ubuntu disco/main arm64 libncurses-dev arm64 6.1+20180210-4ubuntu1 [304 kB] Get:124 http://ftpmaster.internal/ubuntu disco/main arm64 libncurses5-dev arm64 6.1+20180210-4ubuntu1 [972 B] Get:125 http://ftpmaster.internal/ubuntu disco/main arm64 libreadline-dev arm64 7.0-5 [127 kB] Get:126 http://ftpmaster.internal/ubuntu disco/main arm64 libjpeg-turbo8-dev arm64 2.0.0-0ubuntu2 [214 kB] Get:127 http://ftpmaster.internal/ubuntu disco/main arm64 libjpeg8-dev arm64 8c-2ubuntu8 [1550 B] Get:128 http://ftpmaster.internal/ubuntu disco/main arm64 libjpeg-dev arm64 8c-2ubuntu8 [1546 B] Get:129 http://ftpmaster.internal/ubuntu disco/main arm64 libpcre16-3 arm64 2:8.39-11 [125 kB] Get:130 http://ftpmaster.internal/ubuntu disco/main arm64 libpcre32-3 arm64 2:8.39-11 [119 kB] Get:131 http://ftpmaster.internal/ubuntu disco/main arm64 libpcrecpp0v5 arm64 2:8.39-11 [15.0 kB] Get:132 http://ftpmaster.internal/ubuntu disco/main arm64 libpcre3-dev arm64 2:8.39-11 [467 kB] Get:133 http://ftpmaster.internal/ubuntu disco/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-0ubuntu2 [171 kB] Get:134 http://ftpmaster.internal/ubuntu disco/main arm64 libpng-dev arm64 1.6.34-2 [165 kB] Get:135 http://ftpmaster.internal/ubuntu disco/main arm64 libbz2-dev arm64 1.0.6-9 [31.0 kB] Get:136 http://ftpmaster.internal/ubuntu disco/main arm64 liblzma-dev arm64 5.2.2-1.3 [137 kB] Get:137 http://ftpmaster.internal/ubuntu disco/main arm64 libicu-le-hb0 arm64 1.0.3+git161113-5 [14.5 kB] Get:138 http://ftpmaster.internal/ubuntu disco/main arm64 libiculx60 arm64 60.2-6ubuntu1 [18.7 kB] Get:139 http://ftpmaster.internal/ubuntu disco/main arm64 icu-devtools arm64 60.2-6ubuntu1 [173 kB] Get:140 http://ftpmaster.internal/ubuntu disco/main arm64 libharfbuzz-icu0 arm64 1.9.0-1 [5800 B] Get:141 http://ftpmaster.internal/ubuntu disco/main arm64 libharfbuzz-gobject0 arm64 1.9.0-1 [13.2 kB] Get:142 http://ftpmaster.internal/ubuntu disco/main arm64 gir1.2-harfbuzz-0.0 arm64 1.9.0-1 [19.4 kB] Get:143 http://ftpmaster.internal/ubuntu disco/main arm64 libglib2.0-bin arm64 2.58.1-2 [68.3 kB] Get:144 http://ftpmaster.internal/ubuntu disco/main arm64 python3-lib2to3 all 3.7.1-1ubuntu3 [76.5 kB] Get:145 http://ftpmaster.internal/ubuntu disco/main arm64 python3-distutils all 3.7.1-1ubuntu3 [141 kB] Get:146 http://ftpmaster.internal/ubuntu disco/main arm64 libglib2.0-dev-bin arm64 2.58.1-2 [103 kB] Get:147 http://ftpmaster.internal/ubuntu disco/main arm64 pkg-config arm64 0.29.1-0ubuntu2 [42.8 kB] Get:148 http://ftpmaster.internal/ubuntu disco/main arm64 libglib2.0-dev arm64 2.58.1-2 [1421 kB] Get:149 http://ftpmaster.internal/ubuntu disco/main arm64 libgraphite2-dev arm64 1.3.12-1 [14.7 kB] Get:150 http://ftpmaster.internal/ubuntu disco/main arm64 libharfbuzz-dev arm64 1.9.0-1 [336 kB] Get:151 http://ftpmaster.internal/ubuntu disco/main arm64 libicu-le-hb-dev arm64 1.0.3+git161113-5 [29.8 kB] Get:152 http://ftpmaster.internal/ubuntu disco/main arm64 libicu-dev arm64 60.2-6ubuntu1 [8887 kB] Get:153 http://ftpmaster.internal/ubuntu disco/universe arm64 r-base-dev all 3.5.1-1build1 [4524 B] Get:154 http://ftpmaster.internal/ubuntu disco/main arm64 libfile-which-perl all 1.22-1 [12.0 kB] Get:155 http://ftpmaster.internal/ubuntu disco/universe arm64 libswitch-perl all 2.17-2 [18.8 kB] Get:156 http://ftpmaster.internal/ubuntu disco/universe arm64 dh-r all 20181101 [31.5 kB] Get:157 http://ftpmaster.internal/ubuntu disco-proposed/universe arm64 r-bioc-biocgenerics all 0.28.0-1 [642 kB] Get:158 http://ftpmaster.internal/ubuntu disco-proposed/universe arm64 r-bioc-biobase arm64 2.42.0-1 [2214 kB] Get:159 http://ftpmaster.internal/ubuntu disco/universe arm64 r-cran-formatr all 1.5-3 [144 kB] Get:160 http://ftpmaster.internal/ubuntu disco/universe arm64 r-cran-lambda.r all 1.2.3-2 [117 kB] Get:161 http://ftpmaster.internal/ubuntu disco/universe arm64 r-cran-futile.options all 1.0.1-2 [19.8 kB] Get:162 http://ftpmaster.internal/ubuntu disco/universe arm64 r-cran-futile.logger all 1.4.3-3 [102 kB] Get:163 http://ftpmaster.internal/ubuntu disco/universe arm64 r-cran-snow all 1:0.4.3-1 [107 kB] Get:164 http://ftpmaster.internal/ubuntu disco/universe arm64 r-bioc-biocparallel arm64 1.14.2-1 [1055 kB] Get:165 http://ftpmaster.internal/ubuntu disco-proposed/universe arm64 r-bioc-s4vectors arm64 0.20.1-1 [1810 kB] Get:166 http://ftpmaster.internal/ubuntu disco-proposed/universe arm64 r-bioc-iranges arm64 2.16.0-1 [2126 kB] Get:167 http://ftpmaster.internal/ubuntu disco-proposed/universe arm64 r-bioc-xvector arm64 0.22.0-1 [601 kB] Get:168 http://ftpmaster.internal/ubuntu disco-proposed/universe arm64 r-bioc-biostrings arm64 2.50.1-1 [14.1 MB] Get:169 http://ftpmaster.internal/ubuntu disco/universe arm64 r-cran-matrixstats arm64 0.54.0-1 [544 kB] Get:170 http://ftpmaster.internal/ubuntu disco-proposed/universe arm64 r-bioc-delayedarray arm64 0.8.0+dfsg-1 [1280 kB] Get:171 http://ftpmaster.internal/ubuntu disco/universe arm64 r-cran-bitops arm64 1.0-6-4 [22.9 kB] Get:172 http://ftpmaster.internal/ubuntu disco/universe arm64 r-cran-rcurl arm64 1.95-4.11-1 [714 kB] Get:173 http://ftpmaster.internal/ubuntu disco/universe arm64 r-bioc-genomeinfodbdata all 1.2.0-1 [9196 kB] Get:174 http://ftpmaster.internal/ubuntu disco-proposed/universe arm64 r-bioc-genomeinfodb all 1.18.0-1 [3691 kB] Get:175 http://ftpmaster.internal/ubuntu disco-proposed/universe arm64 r-bioc-genomicranges arm64 1.34.0+dfsg-1 [1765 kB] Get:176 http://ftpmaster.internal/ubuntu disco/universe arm64 r-cran-lattice arm64 0.20-38-1 [1110 kB] Get:177 http://ftpmaster.internal/ubuntu disco-proposed/universe arm64 r-cran-matrix arm64 1.2-15-1 [3316 kB] Get:178 http://ftpmaster.internal/ubuntu disco-proposed/universe arm64 r-bioc-summarizedexperiment all 1.12.0+dfsg-1 [1885 kB] Get:179 http://ftpmaster.internal/ubuntu disco-proposed/universe arm64 r-bioc-rsamtools arm64 1.34.0-1 [3516 kB] Get:180 http://ftpmaster.internal/ubuntu disco-proposed/universe arm64 r-bioc-genomicalignments arm64 1.18.0-1 [2099 kB] Get:181 http://ftpmaster.internal/ubuntu disco/universe arm64 r-cran-hwriter all 1.3.2-3 [158 kB] Get:182 http://ftpmaster.internal/ubuntu disco/universe arm64 r-cran-rcolorbrewer all 1.1-2-2 [54.4 kB] Get:183 http://ftpmaster.internal/ubuntu disco/universe arm64 r-cran-latticeextra arm64 0.6-28-2build2 [2181 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 130 MB in 5s (27.0 MB/s) Selecting previously unselected package libpython3.7-minimal:arm64. (Reading database ... 14518 files and directories currently installed.) Preparing to unpack .../libpython3.7-minimal_3.7.1-1_arm64.deb ... Unpacking libpython3.7-minimal:arm64 (3.7.1-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.2.6-1_arm64.deb ... Unpacking libexpat1:arm64 (2.2.6-1) ... Selecting previously unselected package python3.7-minimal. Preparing to unpack .../python3.7-minimal_3.7.1-1_arm64.deb ... Unpacking python3.7-minimal (3.7.1-1) ... Setting up libpython3.7-minimal:arm64 (3.7.1-1) ... Setting up libexpat1:arm64 (2.2.6-1) ... Setting up python3.7-minimal (3.7.1-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 14767 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.7.1-1ubuntu1_arm64.deb ... Unpacking python3-minimal (3.7.1-1ubuntu1) ... Selecting previously unselected package mime-support. 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Setting up ucf (3.0038) ... Setting up libgirepository-1.0-1:arm64 (1.58.0-1build1) ... Setting up libxml2:arm64 (2.9.4+dfsg1-7ubuntu2) ... Setting up zip (3.0-11build1) ... Setting up libfreetype6:arm64 (2.8.1-2ubuntu2) ... Setting up libmagic-mgc (1:5.34-2) ... Setting up libmagic1:arm64 (1:5.34-2) ... Setting up libgraphite2-3:arm64 (1.3.12-1) ... Setting up libcroco3:arm64 (0.6.12-2) ... Setting up pkg-config (0.29.1-0ubuntu2) ... Setting up libpixman-1-0:arm64 (0.34.0-2) ... Setting up libblas3:arm64 (3.8.0-1build1) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up gir1.2-glib-2.0:arm64 (1.58.0-1build1) ... Setting up libjpeg-turbo8-dev:arm64 (2.0.0-0ubuntu2) ... Setting up libglib2.0-data (2.58.1-2) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... Setting up dwz (0.12-2) ... Setting up autotools-dev (20180224.1) ... Setting up libheimbase1-heimdal:arm64 (7.5.0+dfsg-2) ... Processing triggers for systemd (239-7ubuntu10.1) ... Setting up libfribidi0:arm64 (1.0.5-3) ... Setting up libpcrecpp0v5:arm64 (2:8.39-11) ... Setting up libpcre32-3:arm64 (2:8.39-11) ... Setting up icu-devtools (60.2-6ubuntu1) ... Setting up libpcre16-3:arm64 (2:8.39-11) ... Setting up libtcl8.6:arm64 (8.6.8+dfsg-4) ... Setting up libthai-data (0.1.28-1) ... Setting up liblzma-dev:arm64 (5.2.2-1.3) ... Setting up libxdmcp6:arm64 (1:1.1.2-3) ... Setting up libkeyutils1:arm64 (1.5.9-9.3) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up x11-common (1:7.7+19ubuntu8) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up xdg-utils (1.1.3-1ubuntu2) ... Setting up libncurses-dev:arm64 (6.1+20180210-4ubuntu1) ... Setting up libglib2.0-bin (2.58.1-2) ... Setting up libgfortran5:arm64 (8.2.0-9ubuntu1) ... Setting up libgraphite2-dev:arm64 (1.3.12-1) ... Setting up libx11-data (2:1.6.7-1) ... Setting up libxau6:arm64 (1:1.0.8-1) ... Setting up autopoint (0.19.8.1-9) ... Setting up libmpdec2:arm64 (2.4.2-2) ... Setting up libwebp6:arm64 (0.6.1-2) ... Setting up zlib1g-dev:arm64 (1:1.2.11.dfsg-0ubuntu2) ... Setting up libfile-stripnondeterminism-perl (0.45.0-1) ... Setting up libjpeg8:arm64 (8c-2ubuntu8) ... Setting up libpaper1:arm64 (1.1.24+nmu5ubuntu1) ... Creating config file /etc/papersize with new version Setting up libk5crypto3:arm64 (1.16-2ubuntu1) ... Setting up libpaper-utils (1.1.24+nmu5ubuntu1) ... Setting up libpcre3-dev:arm64 (2:8.39-11) ... Setting up libpython3.7-stdlib:arm64 (3.7.1-1) ... Setting up fontconfig-config (2.13.0-5ubuntu3) ... Setting up libwind0-heimdal:arm64 (7.5.0+dfsg-2) ... Setting up gettext (0.19.8.1-9) ... Setting up libblas-dev:arm64 (3.8.0-1build1) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode Setting up libasn1-8-heimdal:arm64 (7.5.0+dfsg-2) ... Setting up liblapack3:arm64 (3.8.0-1build1) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up libhcrypto4-heimdal:arm64 (7.5.0+dfsg-2) ... Setting up libharfbuzz0b:arm64 (1.9.0-1) ... Setting up libtiff5:arm64 (4.0.9+git181026-1) ... Setting up python3.7 (3.7.1-1) ... Setting up autoconf (2.69-11) ... Setting up libthai0:arm64 (0.1.28-1) ... Setting up file (1:5.34-2) ... Setting up libhx509-5-heimdal:arm64 (7.5.0+dfsg-2) ... Setting up libncurses5-dev:arm64 (6.1+20180210-4ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libjpeg8-dev:arm64 (8c-2ubuntu8) ... Setting up gir1.2-harfbuzz-0.0:arm64 (1.9.0-1) ... Setting up libjpeg-dev:arm64 (8c-2ubuntu8) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libreadline-dev:arm64 (7.0-5) ... Setting up libice6:arm64 (2:1.0.9-2) ... Setting up man-db (2.8.4-3) ... Not building database; man-db/auto-update is not 'true'. Setting up libkrb5-3:arm64 (1.16-2ubuntu1) ... Setting up libkrb5-26-heimdal:arm64 (7.5.0+dfsg-2) ... Setting up libpng-dev:arm64 (1.6.34-2) ... Setting up libgfortran-8-dev:arm64 (8.2.0-9ubuntu1) ... Setting up libxcb1:arm64 (1.13.1-1) ... Setting up libharfbuzz-gobject0:arm64 (1.9.0-1) ... Setting up libheimntlm0-heimdal:arm64 (7.5.0+dfsg-2) ... Setting up liblapack-dev:arm64 (3.8.0-1build1) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode Setting up libtool (2.4.6-6) ... Setting up libpython3-stdlib:arm64 (3.7.1-1ubuntu1) ... Setting up libfontconfig1:arm64 (2.13.0-5ubuntu3) ... Setting up libsm6:arm64 (2:1.2.2-1) ... Setting up libxcb-render0:arm64 (1.13.1-1) ... Setting up libharfbuzz-icu0:arm64 (1.9.0-1) ... Setting up po-debconf (1.0.20) ... Setting up python3 (3.7.1-1ubuntu1) ... Setting up gfortran-8 (8.2.0-9ubuntu1) ... Setting up libicu-le-hb0:arm64 (1.0.3+git161113-5) ... Setting up libx11-6:arm64 (2:1.6.7-1) ... Setting up libxmuu1:arm64 (2:1.1.2-2) ... Setting up libgssapi-krb5-2:arm64 (1.16-2ubuntu1) ... Setting up libiculx60:arm64 (60.2-6ubuntu1) ... Setting up libxcb-shm0:arm64 (1.13.1-1) ... Setting up libxt6:arm64 (1:1.1.5-1) ... Setting up libxrender1:arm64 (1:0.9.10-1) ... Setting up libxft2:arm64 (2.3.2-2) ... Setting up libgssapi3-heimdal:arm64 (7.5.0+dfsg-2) ... Setting up python3-lib2to3 (3.7.1-1ubuntu3) ... Setting up python3-distutils (3.7.1-1ubuntu3) ... Setting up fontconfig (2.13.0-5ubuntu3) ... Regenerating fonts cache... done. Setting up gfortran (4:8.2.0-2ubuntu2) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libxext6:arm64 (2:1.3.3-1) ... Setting up libglib2.0-dev-bin (2.58.1-2) ... Setting up libxss1:arm64 (1:1.2.3-1) ... Setting up libglib2.0-dev:arm64 (2.58.1-2) ... Setting up xauth (1:1.0.10-1) ... Setting up libldap-2.4-2:arm64 (2.4.46+dfsg-5ubuntu2) ... Setting up libpango-1.0-0:arm64 (1.42.4-3) ... Setting up libcairo2:arm64 (1.16.0-1) ... Setting up libtk8.6:arm64 (8.6.8-4) ... Setting up libcurl4:arm64 (7.61.0-1ubuntu2.2) ... Setting up libpangoft2-1.0-0:arm64 (1.42.4-3) ... Setting up libpangocairo-1.0-0:arm64 (1.42.4-3) ... Setting up r-base-core (3.5.1-1build1) ... Creating config file /etc/R/Renviron with new version Setting up r-bioc-biocgenerics (0.28.0-1) ... Setting up r-bioc-biobase (2.42.0-1) ... Setting up r-cran-rcolorbrewer (1.1-2-2) ... Setting up r-cran-bitops (1.0-6-4) ... Setting up r-cran-formatr (1.5-3) ... Setting up r-cran-futile.options (1.0.1-2) ... Setting up r-cran-rcurl (1.95-4.11-1) ... Setting up r-cran-hwriter (1.3.2-3) ... Setting up r-cran-lambda.r (1.2.3-2) ... Setting up r-cran-matrixstats (0.54.0-1) ... Setting up r-cran-snow (1:0.4.3-1) ... Setting up r-bioc-s4vectors (0.20.1-1) ... Setting up r-cran-lattice (0.20-38-1) ... Setting up r-cran-latticeextra (0.6-28-2build2) ... Setting up r-bioc-genomeinfodbdata (1.2.0-1) ... Setting up r-cran-futile.logger (1.4.3-3) ... Setting up r-bioc-iranges (2.16.0-1) ... Setting up r-bioc-biocparallel (1.14.2-1) ... Setting up r-cran-matrix (1.2-15-1) ... Setting up r-bioc-delayedarray (0.8.0+dfsg-1) ... Setting up r-bioc-genomeinfodb (1.18.0-1) ... Setting up r-bioc-xvector (0.22.0-1) ... Setting up r-bioc-biostrings (2.50.1-1) ... Setting up r-bioc-genomicranges (1.34.0+dfsg-1) ... Setting up r-bioc-summarizedexperiment (1.12.0+dfsg-1) ... Setting up r-bioc-rsamtools (1.34.0-1) ... Setting up r-bioc-genomicalignments (1.18.0-1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (0.45.0-1) ... Setting up libharfbuzz-dev:arm64 (1.9.0-1) ... Setting up debhelper (11.3.2ubuntu1) ... Setting up libicu-le-hb-dev:arm64 (1.0.3+git161113-5) ... Setting up libicu-dev (60.2-6ubuntu1) ... Setting up r-base-dev (3.5.1-1build1) ... Setting up dh-r (20181101) ... Setting up sbuild-build-depends-r-bioc-shortread-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... Processing triggers for systemd (239-7ubuntu10.1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-138-generic arm64 (aarch64) Toolchain package versions: binutils_2.31.1-7ubuntu1 dpkg-dev_1.19.0.5ubuntu5 g++-8_8.2.0-9ubuntu1 gcc-8_8.2.0-9ubuntu1 libc6-dev_2.28-0ubuntu1 libstdc++-8-dev_8.2.0-9ubuntu1 libstdc++6_8.2.0-9ubuntu1 linux-libc-dev_4.18.0-11.12 Package versions: adduser_3.117ubuntu1 advancecomp_2.1-1 apt_1.7.0 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1ubuntu8 base-passwd_3.5.45 bash_4.4.18-2ubuntu3 binutils_2.31.1-7ubuntu1 binutils-aarch64-linux-gnu_2.31.1-7ubuntu1 binutils-common_2.31.1-7ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.32-0.1ubuntu2 build-essential_12.5ubuntu2 bzip2_1.0.6-9 ca-certificates_20180409 coreutils_8.28-1ubuntu2 cpp_4:8.2.0-2ubuntu2 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python3-lib2to3_3.7.1-1ubuntu3 python3-minimal_3.7.1-1ubuntu1 python3.7_3.7.1-1 python3.7-minimal_3.7.1-1 r-base-core_3.5.1-1build1 r-base-dev_3.5.1-1build1 r-bioc-biobase_2.42.0-1 r-bioc-biocgenerics_0.28.0-1 r-bioc-biocparallel_1.14.2-1 r-bioc-biostrings_2.50.1-1 r-bioc-delayedarray_0.8.0+dfsg-1 r-bioc-genomeinfodb_1.18.0-1 r-bioc-genomeinfodbdata_1.2.0-1 r-bioc-genomicalignments_1.18.0-1 r-bioc-genomicranges_1.34.0+dfsg-1 r-bioc-iranges_2.16.0-1 r-bioc-rsamtools_1.34.0-1 r-bioc-s4vectors_0.20.1-1 r-bioc-summarizedexperiment_1.12.0+dfsg-1 r-bioc-xvector_0.22.0-1 r-cran-bitops_1.0-6-4 r-cran-formatr_1.5-3 r-cran-futile.logger_1.4.3-3 r-cran-futile.options_1.0.1-2 r-cran-hwriter_1.3.2-3 r-cran-lambda.r_1.2.3-2 r-cran-lattice_0.20-38-1 r-cran-latticeextra_0.6-28-2build2 r-cran-matrix_1.2-15-1 r-cran-matrixstats_0.54.0-1 r-cran-rcolorbrewer_1.1-2-2 r-cran-rcurl_1.95-4.11-1 r-cran-snow_1:0.4.3-1 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-shortread-dummy_0.invalid.0 sed_4.5-2 sensible-utils_0.0.12 systemd_239-7ubuntu10.1 systemd-sysv_239-7ubuntu10.1 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu2 tar_1.30+dfsg-2 tzdata_2018g-1 ubuntu-keyring_2018.09.18.1 ucf_3.0038 unzip_6.0-21ubuntu1 util-linux_2.32-0.1ubuntu2 x11-common_1:7.7+19ubuntu8 xauth_1:1.0.10-1 xdg-utils_1.1.3-1ubuntu2 xz-utils_5.2.2-1.3 zip_3.0-11build1 zlib1g_1:1.2.11.dfsg-0ubuntu2 zlib1g-dev_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Mon Nov 12 07:07:58 2018 UTC gpgv: using RSA key 9A3C07BD06DE2F416E813A5D612EF1613E050F54 gpgv: issuer "daissi@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./r-bioc-shortread_1.40.0-1.dsc dpkg-source: info: extracting r-bioc-shortread in r-bioc-shortread-1.40.0 dpkg-source: info: unpacking r-bioc-shortread_1.40.0.orig.tar.gz dpkg-source: info: unpacking r-bioc-shortread_1.40.0-1.debian.tar.xz dpkg-source: info: applying use_debian_packaged_zlib.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-15652326 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-15652326 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-15652326 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package r-bioc-shortread dpkg-buildpackage: info: source version 1.40.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build r-bioc-shortread-1.40.0 dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean --buildsystem R dh_testdir -O--buildsystem=R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules build-arch dh build-arch --buildsystem R dh_testdir -a -O--buildsystem=R dh_update_autotools_config -a -O--buildsystem=R dh_autoreconf -a -O--buildsystem=R dh_auto_configure -a -O--buildsystem=R dh_auto_build -a -O--buildsystem=R dh_auto_test -a -O--buildsystem=R create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --buildsystem R dh_testroot -a -O--buildsystem=R dh_prep -a -O--buildsystem=R dh_installdirs -a -O--buildsystem=R dh_auto_install -a -O--buildsystem=R I: R packages needed for DEP8: runit I: R Package: ShortRead Version: 1.40.0 I: Building using R version 3.5.1-1build1 I: R API version: r-api-3.5 I: Using built-time from d/changelog: Mon, 12 Nov 2018 08:02:46 +0100 mkdir -p /<>/debian/r-bioc-shortread/usr/lib/R/site-library R CMD INSTALL -l /<>/debian/r-bioc-shortread/usr/lib/R/site-library --clean . "--built-timestamp='Mon, 12 Nov 2018 08:02:46 +0100'" * installing *source* package ‘ShortRead’ ... checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for gzeof in -lz... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking size of unsigned long... 8 configure: creating ./config.status config.status: creating src/Makevars ** libs make[1]: Entering directory '/<>/src' gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-XlT4ot/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Biostrings_stubs.c -o Biostrings_stubs.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-XlT4ot/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c IRanges_stubs.c -o IRanges_stubs.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-XlT4ot/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c R_init_ShortRead.c -o R_init_ShortRead.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-XlT4ot/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c S4Vectors_stubs.c -o S4Vectors_stubs.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-XlT4ot/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c XVector_stubs.c -o XVector_stubs.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-XlT4ot/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c alphabet.c -o alphabet.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-XlT4ot/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c io.c -o io.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-XlT4ot/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c io_bowtie.c -o io_bowtie.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-XlT4ot/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c io_soap.c -o io_soap.o g++ -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_LIBZ=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DSIZEOF_UNSIGNED_LONG=8 -fpic -g -O2 -fdebug-prefix-map=/build/r-base-XlT4ot/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readBfaToc.cc -o readBfaToc.o readBfaToc.cc: In function ‘SEXPREC* readBfaToc(SEXP)’: readBfaToc.cc:35:19: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] (void) fread( seq_name, sizeof(char), name_len, fp ); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ readBfaToc.cc:36:19: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] (void) fread( &seq_ori_len, sizeof(int), 1, fp ); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ readBfaToc.cc:37:19: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] (void) fread( &seq_len, sizeof(int), 1, fp ); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_LIBZ=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DSIZEOF_UNSIGNED_LONG=8 -fpic -g -O2 -fdebug-prefix-map=/build/r-base-XlT4ot/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c read_maq_map.cc -o read_maq_map.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-XlT4ot/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sampler.c -o sampler.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-XlT4ot/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c trim.c -o trim.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-XlT4ot/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c util.c -o util.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-XlT4ot/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c xsnap.c -o xsnap.o g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o ShortRead.so Biostrings_stubs.o IRanges_stubs.o R_init_ShortRead.o S4Vectors_stubs.o XVector_stubs.o alphabet.o io.o io_bowtie.o io_soap.o readBfaToc.o read_maq_map.o sampler.o trim.o util.o xsnap.o -lz -fopenmp -L/usr/lib/R/lib -lR make[1]: Leaving directory '/<>/src' make[1]: Entering directory '/<>/src' make[1]: Leaving directory '/<>/src' installing to /<>/debian/r-bioc-shortread/usr/lib/R/site-library/ShortRead/libs ** R ** inst ** byte-compile and prepare package for lazy loading code for methods in class “ShortReadFile” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?) code for methods in class “FastqFileReader” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?) code for methods in class “QAData” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?) code for methods in class “Snapshot” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?) code for methods in class “SpTrellis” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?) code for methods in class “FastqSampler” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?) code for methods in class “FastqStreamer” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?) ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (ShortRead) I: Using r-bioc-biocgenerics for Depends:BiocGenerics (>= 0.23.3) I: Using r-bioc-biocparallel for Depends:BiocParallel I: Using r-bioc-biostrings for Depends:Biostrings (>= 2.47.6) I: Using r-bioc-rsamtools for Depends:Rsamtools (>= 1.31.2) I: Using r-bioc-genomicalignments for Depends:GenomicAlignments (>= 1.15.6) I: Using r-cran-runit for Recommends:runit W: Cannot find a debian package for Suggests:BiocStyle I: Using r-bioc-biomart for Suggests:biomaRt I: Using r-bioc-genomicfeatures for Suggests:GenomicFeatures W: Cannot find a debian package for Suggests:yeastNagalakshmi I: Using r-bioc-biobase for Imports:Biobase I: Using r-bioc-s4vectors for Imports:S4Vectors (>= 0.17.25) I: Using r-bioc-iranges for Imports:IRanges (>= 2.13.12) I: Using r-bioc-genomeinfodb for Imports:GenomeInfoDb (>= 1.15.2) I: Using r-bioc-genomicranges for Imports:GenomicRanges (>= 1.31.8) I: Using r-cran-hwriter for Imports:hwriter I: Using r-cran-lattice for Imports:lattice I: Using r-cran-latticeextra for Imports:latticeExtra Create lintian-override for package-contains-documentation-outside-usr-share-doc dh_install -a -O--buildsystem=R dh_installdocs -a -O--buildsystem=R dh_installchangelogs -a -O--buildsystem=R dh_installexamples -a -O--buildsystem=R dh_installman -a -O--buildsystem=R dh_installcatalogs -a -O--buildsystem=R dh_installcron -a -O--buildsystem=R dh_installdebconf -a -O--buildsystem=R dh_installemacsen -a -O--buildsystem=R dh_installifupdown -a -O--buildsystem=R dh_installinfo -a -O--buildsystem=R dh_installinit -a -O--buildsystem=R dh_installsystemd -a -O--buildsystem=R dh_installmenu -a -O--buildsystem=R dh_installmime -a -O--buildsystem=R dh_installmodules -a -O--buildsystem=R dh_installlogcheck -a -O--buildsystem=R dh_installlogrotate -a -O--buildsystem=R dh_installpam -a -O--buildsystem=R dh_installppp -a -O--buildsystem=R dh_installudev -a -O--buildsystem=R dh_installgsettings -a -O--buildsystem=R dh_bugfiles -a -O--buildsystem=R dh_ucf -a -O--buildsystem=R dh_lintian -a -O--buildsystem=R dh_gconf -a -O--buildsystem=R dh_icons -a -O--buildsystem=R dh_perl -a -O--buildsystem=R dh_usrlocal -a -O--buildsystem=R dh_link -a -O--buildsystem=R dh_installwm -a -O--buildsystem=R dh_installxfonts -a -O--buildsystem=R dh_strip_nondeterminism -a -O--buildsystem=R dh_compress -a -O--buildsystem=R dh_fixperms -a -O--buildsystem=R dh_missing -a -O--buildsystem=R dh_strip -a -O--buildsystem=R dh_makeshlibs -a -O--buildsystem=R dh_shlibdeps -a -O--buildsystem=R dh_installdeb -a -O--buildsystem=R dh_gencontrol -a -O--buildsystem=R dh_md5sums -a -O--buildsystem=R dh_builddeb -a -O--buildsystem=R INFO: pkgstriptranslations version 143 INFO: pkgstriptranslations version 143 pkgstriptranslations: processing r-bioc-shortread (in debian/r-bioc-shortread); do_strip: , oemstrip: pkgstriptranslations: processing r-bioc-shortread-dbgsym (in debian/.debhelper/r-bioc-shortread/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/r-bioc-shortread/DEBIAN/control, package r-bioc-shortread, directory debian/r-bioc-shortread pkgstripfiles: Truncating usr/share/doc/r-bioc-shortread/changelog.Debian.gz to topmost ten records pkgstripfiles: processing control file: debian/.debhelper/r-bioc-shortread/dbgsym-root/DEBIAN/control, package r-bioc-shortread-dbgsym, directory debian/.debhelper/r-bioc-shortread/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package r-bioc-shortread ... dpkg-deb: building package 'r-bioc-shortread-dbgsym' in 'debian/.debhelper/scratch-space/build-r-bioc-shortread/r-bioc-shortread-dbgsym_1.40.0-1_arm64.deb'. pkgstripfiles: No PNG files. dpkg-deb: building package 'r-bioc-shortread' in '../r-bioc-shortread_1.40.0-1_arm64.deb'. Renaming r-bioc-shortread-dbgsym_1.40.0-1_arm64.deb to r-bioc-shortread-dbgsym_1.40.0-1_arm64.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../r-bioc-shortread_1.40.0-1_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build r-bioc-shortread-1.40.0 dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20181112-1119 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ r-bioc-shortread_1.40.0-1_arm64.changes: ---------------------------------------- Format: 1.8 Date: Mon, 12 Nov 2018 08:02:46 +0100 Source: r-bioc-shortread Binary: r-bioc-shortread Architecture: arm64 Version: 1.40.0-1 Distribution: disco-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Dylan Aïssi Description: r-bioc-shortread - GNU R classes and methods for high-throughput short-read sequenci Changes: r-bioc-shortread (1.40.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.2.1 Checksums-Sha1: 280b9b281a1dcd20b562bc20b8a434f3e19a3bef 169304 r-bioc-shortread-dbgsym_1.40.0-1_arm64.ddeb ab8be7c041027bc5ee7a3de734576a9106085e77 10309 r-bioc-shortread_1.40.0-1_arm64.buildinfo aea18b885da595371212d38f23f79b0d7bd69414 5017656 r-bioc-shortread_1.40.0-1_arm64.deb Checksums-Sha256: 420304acf3a532cd014fbbb5e610c79e173c8bffcaaf54a1ad565fc9d9afb657 169304 r-bioc-shortread-dbgsym_1.40.0-1_arm64.ddeb 1fb6fe1357ae25c58be72691a247fd64d851785a7253a8be8305cc9d3a96cdc2 10309 r-bioc-shortread_1.40.0-1_arm64.buildinfo 4c9b2bf5a73330297f14316ce51b3c0cbfda52e519be63cbc77b5db5f0fd6557 5017656 r-bioc-shortread_1.40.0-1_arm64.deb Files: 2140ab59412bbbfe0fae051bb12d9a16 169304 debug optional r-bioc-shortread-dbgsym_1.40.0-1_arm64.ddeb d9c0785e01504c37ea110231d90d31dd 10309 gnu-r optional r-bioc-shortread_1.40.0-1_arm64.buildinfo e75a54d3edb398ff823364c39808c008 5017656 gnu-r optional r-bioc-shortread_1.40.0-1_arm64.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ r-bioc-shortread_1.40.0-1_arm64.deb ----------------------------------- new debian package, version 2.0. size 5017656 bytes: control archive=4200 bytes. 1333 bytes, 19 lines control 10890 bytes, 114 lines md5sums Package: r-bioc-shortread Version: 1.40.0-1 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debian R Packages Maintainers Installed-Size: 7349 Depends: r-base-core (>= 3.5.1-1build1), r-api-3.5, r-bioc-biocgenerics (>= 0.23.3), r-bioc-biocparallel, r-bioc-biostrings (>= 2.47.6), r-bioc-rsamtools (>= 1.31.2), r-bioc-genomicalignments (>= 1.15.6), r-bioc-biobase, r-bioc-s4vectors (>= 0.17.25), r-bioc-iranges (>= 2.13.12), r-bioc-genomeinfodb (>= 1.15.2), r-bioc-genomicranges (>= 1.31.8), r-cran-hwriter, r-cran-lattice, r-cran-latticeextra, libc6 (>= 2.17), libgcc1 (>= 1:3.0), libstdc++6 (>= 5.2), zlib1g (>= 1:1.1.4) Recommends: r-cran-runit Suggests: r-bioc-biomart, r-bioc-genomicfeatures Section: gnu-r Priority: optional Homepage: https://bioconductor.org/packages/ShortRead/ Description: GNU R classes and methods for high-throughput short-read sequencing data This BioConductor module is a package for input, quality assessment, manipulation and output of high-throughput sequencing data. ShortRead is provided in the R and Bioconductor environments, allowing ready access to additional facilities for advanced statistical analysis, data transformation, visualization and integration with diverse genomic resources. drwxr-xr-x root/root 0 2018-11-12 07:02 ./ drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/ drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/lib/ drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/lib/R/ drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/lib/R/site-library/ drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/ -rw-r--r-- root/root 1158 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/CITATION -rw-r--r-- root/root 1491 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/DESCRIPTION -rw-r--r-- root/root 5917 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/INDEX drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/Meta/ -rw-r--r-- root/root 5599 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/Meta/Rd.rds 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+------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build-Space: 21960 Build-Time: 138 Distribution: disco-proposed Host Architecture: arm64 Install-Time: 57 Job: r-bioc-shortread_1.40.0-1.dsc Machine Architecture: arm64 Package: r-bioc-shortread Package-Time: 197 Source-Version: 1.40.0-1 Space: 21960 Status: successful Version: 1.40.0-1 -------------------------------------------------------------------------------- Finished at 20181112-1119 Build needed 00:03:17, 21960k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target 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