https://launchpad.net/ubuntu/+source/r-bioc-genomicranges/1.42.0+dfsg-1/+build/20240098 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux lcy01-amd64-009 4.15.0-122-generic #124-Ubuntu SMP Thu Oct 15 13:03:05 UTC 2020 x86_64 Buildd toolchain package versions: launchpad-buildd_193~468~ubuntu18.04.1 python3-lpbuildd_193~468~ubuntu18.04.1 sbuild_0.75.0-1ubuntu1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu16.04.1 bzr_2.7.0+bzr6622-10 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu18.04.1 git_1:2.17.1-1ubuntu0.7 dpkg-dev_1.19.0.5ubuntu2.3 python-debian_0.1.32 python3-debian_0.1.32. Syncing the system clock with the buildd NTP service... 5 Nov 11:09:01 ntpdate[1831]: adjust time server 10.211.37.1 offset -0.001615 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=hirsute --arch=amd64 PACKAGEBUILD-20240098 --image-type chroot /home/buildd/filecache-default/720a8366e1260e086c1691fe6381a3f2b1c21d81 Creating target for build PACKAGEBUILD-20240098 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=hirsute --arch=amd64 PACKAGEBUILD-20240098 Starting target for build PACKAGEBUILD-20240098 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=hirsute --arch=amd64 PACKAGEBUILD-20240098 'deb http://ftpmaster.internal/ubuntu hirsute main universe' 'deb http://ftpmaster.internal/ubuntu hirsute-security main universe' 'deb http://ftpmaster.internal/ubuntu hirsute-updates main universe' 'deb http://ftpmaster.internal/ubuntu hirsute-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-20240098 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=hirsute --arch=amd64 PACKAGEBUILD-20240098 Updating target for build PACKAGEBUILD-20240098 Get:1 http://ftpmaster.internal/ubuntu hirsute InRelease [267 kB] Get:2 http://ftpmaster.internal/ubuntu hirsute-security InRelease [88.4 kB] Get:3 http://ftpmaster.internal/ubuntu hirsute-updates InRelease [88.4 kB] Get:4 http://ftpmaster.internal/ubuntu hirsute-proposed InRelease [117 kB] Get:5 http://ftpmaster.internal/ubuntu hirsute/main amd64 Packages [1383 kB] Get:6 http://ftpmaster.internal/ubuntu hirsute/main Translation-en [508 kB] Get:7 http://ftpmaster.internal/ubuntu hirsute/universe amd64 Packages [12.8 MB] Get:8 http://ftpmaster.internal/ubuntu hirsute/universe Translation-en [5323 kB] Get:9 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 Packages [201 kB] Get:10 http://ftpmaster.internal/ubuntu hirsute-proposed/main Translation-en [70.4 kB] Get:11 http://ftpmaster.internal/ubuntu hirsute-proposed/universe amd64 Packages [1522 kB] Get:12 http://ftpmaster.internal/ubuntu hirsute-proposed/universe Translation-en [500 kB] Fetched 22.9 MB in 3s (7002 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt base-files base-passwd binutils binutils-common binutils-x86-64-linux-gnu cpp-10 fakeroot g++-10 gcc-10 gcc-10-base libapparmor1 libapt-pkg6.0 libasan6 libatomic1 libaudit-common libaudit1 libbinutils libc-bin libc-dev-bin libc6 libc6-dev libcap2 libcc1-0 libcrypt-dev libcrypt1 libctf-nobfd0 libctf0 libdebconfclient0 libfakeroot libgcc-10-dev libgcc-s1 libgomp1 libidn2-0 libip4tc2 libitm1 liblsan0 libmpc3 libncurses6 libncursesw6 libnpth0 libquadmath0 libseccomp2 libselinux1 libsemanage-common libsemanage1 libstdc++-10-dev libstdc++6 libsystemd0 libtinfo6 libtirpc-common libtirpc-dev libtirpc3 libtsan0 libubsan1 libudev1 linux-libc-dev ncurses-base ncurses-bin systemd systemd-sysv systemd-timesyncd sysvinit-utils tzdata 64 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 229 MB of archives. After this operation, 885 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libcrypt-dev amd64 1:4.4.17-1ubuntu1 [105 kB] Get:2 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libcrypt1 amd64 1:4.4.17-1ubuntu1 [78.8 kB] Get:3 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libc6-dev amd64 2.32-0ubuntu4 [2128 kB] Get:4 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libc-dev-bin amd64 2.32-0ubuntu4 [30.9 kB] Get:5 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 linux-libc-dev amd64 5.8.0-26.27 [1165 kB] Get:6 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libtirpc-common all 1.2.6-3 [7444 B] Get:7 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libtirpc-dev amd64 1.2.6-3 [184 kB] Get:8 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libtirpc3 amd64 1.2.6-3 [77.2 kB] Get:9 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libcc1-0 amd64 10.2.0-16ubuntu1 [41.3 kB] Get:10 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 gcc-10-base amd64 10.2.0-16ubuntu1 [19.6 kB] Get:11 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libgcc-s1 amd64 10.2.0-16ubuntu1 [41.7 kB] Get:12 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libgomp1 amd64 10.2.0-16ubuntu1 [102 kB] Get:13 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libitm1 amd64 10.2.0-16ubuntu1 [26.4 kB] Get:14 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libatomic1 amd64 10.2.0-16ubuntu1 [9284 B] Get:15 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libasan6 amd64 10.2.0-16ubuntu1 [344 kB] Get:16 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 liblsan0 amd64 10.2.0-16ubuntu1 [144 kB] Get:17 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libtsan0 amd64 10.2.0-16ubuntu1 [320 kB] Get:18 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libubsan1 amd64 10.2.0-16ubuntu1 [136 kB] Get:19 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libquadmath0 amd64 10.2.0-16ubuntu1 [146 kB] Get:20 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 g++-10 amd64 10.2.0-16ubuntu1 [70.1 MB] Get:21 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libstdc++-10-dev amd64 10.2.0-16ubuntu1 [1750 kB] Get:22 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libgcc-10-dev amd64 10.2.0-16ubuntu1 [2341 kB] Get:23 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 gcc-10 amd64 10.2.0-16ubuntu1 [72.0 MB] Get:24 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 cpp-10 amd64 10.2.0-16ubuntu1 [63.5 MB] Get:25 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libstdc++6 amd64 10.2.0-16ubuntu1 [501 kB] Get:26 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libmpc3 amd64 1.2.0-1 [44.3 kB] Get:27 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libctf-nobfd0 amd64 2.35.1-2ubuntu1 [48.2 kB] Get:28 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libctf0 amd64 2.35.1-2ubuntu1 [47.6 kB] Get:29 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libbinutils amd64 2.35.1-2ubuntu1 [481 kB] Get:30 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 binutils-common amd64 2.35.1-2ubuntu1 [212 kB] Get:31 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 binutils amd64 2.35.1-2ubuntu1 [3376 B] Get:32 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 binutils-x86-64-linux-gnu amd64 2.35.1-2ubuntu1 [1646 kB] Get:33 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libc6 amd64 2.32-0ubuntu4 [2684 kB] Get:34 http://ftpmaster.internal/ubuntu hirsute/main amd64 base-files amd64 11ubuntu16 [60.5 kB] Get:35 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libncursesw6 amd64 6.2+20200918-1 [132 kB] Get:36 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libncurses6 amd64 6.2+20200918-1 [102 kB] Get:37 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libtinfo6 amd64 6.2+20200918-1 [87.3 kB] Get:38 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 ncurses-bin amd64 6.2+20200918-1 [173 kB] Get:39 http://ftpmaster.internal/ubuntu hirsute/main amd64 libdebconfclient0 amd64 0.254ubuntu1 [6200 B] Get:40 http://ftpmaster.internal/ubuntu hirsute/main amd64 base-passwd amd64 3.5.48 [47.5 kB] Get:41 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libc-bin amd64 2.32-0ubuntu4 [625 kB] Get:42 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 ncurses-base all 6.2+20200918-1 [18.7 kB] Get:43 http://ftpmaster.internal/ubuntu hirsute/main amd64 sysvinit-utils amd64 2.96-5ubuntu1 [20.8 kB] Get:44 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 systemd-timesyncd amd64 246.6-2ubuntu1 [28.2 kB] Get:45 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 systemd-sysv amd64 246.6-2ubuntu1 [10.3 kB] Get:46 http://ftpmaster.internal/ubuntu hirsute/main amd64 libapparmor1 amd64 3.0.0-0ubuntu2 [36.3 kB] Get:47 http://ftpmaster.internal/ubuntu hirsute/main amd64 libaudit-common all 1:2.8.5-3ubuntu2 [4092 B] Get:48 http://ftpmaster.internal/ubuntu hirsute/main amd64 libaudit1 amd64 1:2.8.5-3ubuntu2 [39.5 kB] Get:49 http://ftpmaster.internal/ubuntu hirsute/main amd64 libcap2 amd64 1:2.44-1 [17.2 kB] Get:50 http://ftpmaster.internal/ubuntu hirsute/main amd64 libidn2-0 amd64 2.3.0-2 [52.5 kB] Get:51 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libip4tc2 amd64 1.8.5-3ubuntu3 [18.7 kB] Get:52 http://ftpmaster.internal/ubuntu hirsute/main amd64 libseccomp2 amd64 2.4.3-1ubuntu5 [42.0 kB] Get:53 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 systemd amd64 246.6-2ubuntu1 [4165 kB] Get:54 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libsystemd0 amd64 246.6-2ubuntu1 [273 kB] Get:55 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libudev1 amd64 246.6-2ubuntu1 [67.6 kB] Get:56 http://ftpmaster.internal/ubuntu hirsute/main amd64 libapt-pkg6.0 amd64 2.1.11 [848 kB] Get:57 http://ftpmaster.internal/ubuntu hirsute/main amd64 apt amd64 2.1.11 [1305 kB] Get:58 http://ftpmaster.internal/ubuntu hirsute/main amd64 libselinux1 amd64 3.1-2build1 [69.4 kB] Get:59 http://ftpmaster.internal/ubuntu hirsute/main amd64 libsemanage-common all 3.1-1build1 [10.1 kB] Get:60 http://ftpmaster.internal/ubuntu hirsute/main amd64 libsemanage1 amd64 3.1-1build1 [87.2 kB] Get:61 http://ftpmaster.internal/ubuntu hirsute/main amd64 tzdata all 2020d-1ubuntu1 [293 kB] Get:62 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libfakeroot amd64 1.25.3-1 [26.6 kB] Get:63 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 fakeroot amd64 1.25.3-1 [62.9 kB] Get:64 http://ftpmaster.internal/ubuntu hirsute/main amd64 libnpth0 amd64 1.6-3 [8220 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 229 MB in 5s (48.6 MB/s) (Reading database ... 12980 files and directories currently installed.) 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Preparing to unpack .../libnpth0_1.6-3_amd64.deb ... Unpacking libnpth0:amd64 (1.6-3) over (1.6-2) ... Setting up libip4tc2:amd64 (1.8.5-3ubuntu3) ... Setting up libapparmor1:amd64 (3.0.0-0ubuntu2) ... Setting up libtirpc-common (1.2.6-3) ... Setting up binutils-common:amd64 (2.35.1-2ubuntu1) ... Setting up linux-libc-dev:amd64 (5.8.0-26.27) ... Setting up libctf-nobfd0:amd64 (2.35.1-2ubuntu1) ... Setting up libnpth0:amd64 (1.6-3) ... Setting up libgomp1:amd64 (10.2.0-16ubuntu1) ... Setting up libcap2:amd64 (1:2.44-1) ... Setting up libfakeroot:amd64 (1.25.3-1) ... Setting up libasan6:amd64 (10.2.0-16ubuntu1) ... Setting up tzdata (2020d-1ubuntu1) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Nov 5 11:09:45 UTC 2020. Universal Time is now: Thu Nov 5 11:09:45 UTC 2020. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up fakeroot (1.25.3-1) ... Setting up libncurses6:amd64 (6.2+20200918-1) ... Setting up libquadmath0:amd64 (10.2.0-16ubuntu1) ... Setting up libmpc3:amd64 (1.2.0-1) ... Setting up libatomic1:amd64 (10.2.0-16ubuntu1) ... Setting up libncursesw6:amd64 (6.2+20200918-1) ... Setting up libubsan1:amd64 (10.2.0-16ubuntu1) ... Setting up libcrypt-dev:amd64 (1:4.4.17-1ubuntu1) ... Setting up libbinutils:amd64 (2.35.1-2ubuntu1) ... Setting up libc-dev-bin (2.32-0ubuntu4) ... Setting up libcc1-0:amd64 (10.2.0-16ubuntu1) ... Setting up liblsan0:amd64 (10.2.0-16ubuntu1) ... Setting up cpp-10 (10.2.0-16ubuntu1) ... Setting up libitm1:amd64 (10.2.0-16ubuntu1) ... Setting up libtsan0:amd64 (10.2.0-16ubuntu1) ... Setting up libctf0:amd64 (2.35.1-2ubuntu1) ... Setting up libtirpc3:amd64 (1.2.6-3) ... Setting up libgcc-10-dev:amd64 (10.2.0-16ubuntu1) ... Setting up libtirpc-dev:amd64 (1.2.6-3) ... Setting up libc6-dev:amd64 (2.32-0ubuntu4) ... Setting up binutils-x86-64-linux-gnu (2.35.1-2ubuntu1) ... Setting up libstdc++-10-dev:amd64 (10.2.0-16ubuntu1) ... Setting up binutils (2.35.1-2ubuntu1) ... Setting up gcc-10 (10.2.0-16ubuntu1) ... Setting up g++-10 (10.2.0-16ubuntu1) ... Setting up systemd (246.6-2ubuntu1) ... Initializing machine ID from random generator. Setting up systemd-timesyncd (246.6-2ubuntu1) ... Setting up systemd-sysv (246.6-2ubuntu1) ... Processing triggers for libc-bin (2.32-0ubuntu4) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-20240098 amd64 hirsute-proposed -c chroot:build-PACKAGEBUILD-20240098 --arch=amd64 --dist=hirsute-proposed --nolog -A r-bioc-genomicranges_1.42.0+dfsg-1.dsc Initiating build PACKAGEBUILD-20240098 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.15.0-122-generic #124-Ubuntu SMP Thu Oct 15 13:03:05 UTC 2020 x86_64 sbuild (Debian sbuild) 0.75.0 (21 Mar 2018) on lcy01-amd64-009.buildd +==============================================================================+ | r-bioc-genomicranges 1.42.0+dfsg-1 (amd64) Thu, 05 Nov 2020 11:09:46 +0000 | +==============================================================================+ Package: r-bioc-genomicranges Version: 1.42.0+dfsg-1 Source Version: 1.42.0+dfsg-1 Distribution: hirsute-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: binary I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-20240098/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- r-bioc-genomicranges_1.42.0+dfsg-1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/r-bioc-genomicranges-AwDbxK/r-bioc-genomicranges-1.42.0+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/r-bioc-genomicranges-AwDbxK' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-dReoJM/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-dReoJM/apt_archive ./ InRelease Get:2 copy:/<>/resolver-dReoJM/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-dReoJM/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-dReoJM/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-dReoJM/apt_archive ./ Packages [434 B] Fetched 1740 B in 0s (129 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-dReoJM/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12979 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biocgenerics (>= 0.25.3), r-bioc-s4vectors (>= 0.27.12), r-bioc-iranges (>= 2.23.9), r-bioc-genomeinfodb (>= 1.15.2), r-bioc-xvector (>= 0.29.2) Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biocgenerics (>= 0.25.3), r-bioc-s4vectors (>= 0.27.12), r-bioc-iranges (>= 2.23.9), r-bioc-genomeinfodb (>= 1.15.2), r-bioc-xvector (>= 0.29.2) dpkg-deb: building package 'sbuild-build-depends-r-bioc-genomicranges-dummy' in '/<>/resolver-dReoJM/apt_archive/sbuild-build-depends-r-bioc-genomicranges-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-r-bioc-genomicranges-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-dReoJM/apt_archive ./ InRelease Get:2 copy:/<>/resolver-dReoJM/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-dReoJM/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-dReoJM/apt_archive ./ Sources [578 B] Get:5 copy:/<>/resolver-dReoJM/apt_archive ./ Packages [660 B] Fetched 2201 B in 0s (154 kB/s) Reading package lists... Reading package lists... Install r-bioc-genomicranges build dependencies (apt-based resolver) -------------------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-10 groff-base icu-devtools intltool-debian libarchive-zip-perl libasn1-8-heimdal libblas-dev libblas3 libbrotli1 libbsd0 libbz2-dev libcairo2 libcroco3 libcurl4 libdatrie1 libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-10-dev libgfortran5 libglib2.0-0 libgraphite2-3 libgssapi3-heimdal libharfbuzz0b libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libice6 libicu-dev libicu67 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libkrb5-26-heimdal liblapack-dev liblapack3 libldap-2.4-2 liblzma-dev libmagic-mgc libmagic1 libncurses-dev libncurses5-dev libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix2 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libreadline-dev libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libssh-4 libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libtool libuchardet0 libwebp6 libwind0-heimdal libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db pkg-config po-debconf r-base-core r-base-dev r-bioc-biocgenerics r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-iranges r-bioc-s4vectors r-bioc-xvector r-bioc-zlibbioc r-cran-bitops r-cran-rcurl ucf unzip x11-common xauth xdg-utils zip zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc debtags dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-multilib gfortran-doc gfortran-10-multilib gfortran-10-doc libcoarrays-dev groff liblapack-doc icu-doc liblzma-doc ncurses-doc readline-doc tcl8.6 tk8.6 libtool-doc gcj-jdk m4-doc apparmor less www-browser libmail-box-perl elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-plain-generic texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo r-bioc-biobase r-bioc-genomicranges r-bioc-delayedarray r-bioc-biostrings r-bioc-rsamtools r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-bsgenome r-bioc-biocstyle r-cran-knitr r-bioc-summarizedexperiment r-cran-matrix r-bioc-shortread r-bioc-graph r-cran-data.table r-cran-xml Recommended packages: devscripts curl | wget | lynx bzip2-doc libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libldap-common libpng-tools publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl r-recommended r-doc-html r-cran-runit r-bioc-genomicranges libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-10 groff-base icu-devtools intltool-debian libarchive-zip-perl libasn1-8-heimdal libblas-dev libblas3 libbrotli1 libbsd0 libbz2-dev libcairo2 libcroco3 libcurl4 libdatrie1 libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-10-dev libgfortran5 libglib2.0-0 libgraphite2-3 libgssapi3-heimdal libharfbuzz0b libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libice6 libicu-dev libicu67 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libkrb5-26-heimdal liblapack-dev liblapack3 libldap-2.4-2 liblzma-dev libmagic-mgc libmagic1 libncurses-dev libncurses5-dev libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix2 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libreadline-dev libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libssh-4 libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libtool libuchardet0 libwebp6 libwind0-heimdal libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db pkg-config po-debconf r-base-core r-base-dev r-bioc-biocgenerics r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-iranges r-bioc-s4vectors r-bioc-xvector r-bioc-zlibbioc r-cran-bitops r-cran-rcurl sbuild-build-depends-r-bioc-genomicranges-dummy ucf unzip x11-common xauth xdg-utils zip zlib1g-dev 0 upgraded, 143 newly installed, 0 to remove and 0 not upgraded. Need to get 157 MB of archives. After this operation, 583 MB of additional disk space will be used. Get:1 copy:/<>/resolver-dReoJM/apt_archive ./ sbuild-build-depends-r-bioc-genomicranges-dummy 0.invalid.0 [952 B] Get:2 http://ftpmaster.internal/ubuntu hirsute/main amd64 bsdextrautils amd64 2.36-3ubuntu1 [77.5 kB] Get:3 http://ftpmaster.internal/ubuntu hirsute/main amd64 libuchardet0 amd64 0.0.7-1 [68.0 kB] Get:4 http://ftpmaster.internal/ubuntu hirsute/main amd64 groff-base amd64 1.22.4-5 [847 kB] Get:5 http://ftpmaster.internal/ubuntu hirsute/main amd64 libpipeline1 amd64 1.5.3-1 [27.8 kB] Get:6 http://ftpmaster.internal/ubuntu hirsute/main amd64 man-db amd64 2.9.3-2 [1117 kB] Get:7 http://ftpmaster.internal/ubuntu hirsute/main amd64 libmagic-mgc amd64 1:5.38-5 [218 kB] Get:8 http://ftpmaster.internal/ubuntu hirsute/main amd64 libmagic1 amd64 1:5.38-5 [76.0 kB] Get:9 http://ftpmaster.internal/ubuntu hirsute/main amd64 file amd64 1:5.38-5 [23.3 kB] Get:10 http://ftpmaster.internal/ubuntu hirsute/main amd64 libbsd0 amd64 0.10.0-1 [45.4 kB] Get:11 http://ftpmaster.internal/ubuntu hirsute/main amd64 libelf1 amd64 0.181-1 [44.3 kB] Get:12 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libexpat1 amd64 2.2.10-1 [76.0 kB] Get:13 http://ftpmaster.internal/ubuntu hirsute/main amd64 libfribidi0 amd64 1.0.8-2 [23.8 kB] Get:14 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libglib2.0-0 amd64 2.66.2-1 [1306 kB] Get:15 http://ftpmaster.internal/ubuntu hirsute/main amd64 libicu67 amd64 67.1-4 [8620 kB] Get:16 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libxml2 amd64 2.9.10+dfsg-6.2 [623 kB] Get:17 http://ftpmaster.internal/ubuntu hirsute/main amd64 ucf all 3.0043 [56.1 kB] Get:18 http://ftpmaster.internal/ubuntu hirsute/main amd64 gettext-base amd64 0.19.8.1-10build1 [50.2 kB] Get:19 http://ftpmaster.internal/ubuntu hirsute/main amd64 libpsl5 amd64 0.21.0-1.1ubuntu1 [52.3 kB] Get:20 http://ftpmaster.internal/ubuntu hirsute/main amd64 libxau6 amd64 1:1.0.9-0ubuntu1 [7488 B] Get:21 http://ftpmaster.internal/ubuntu hirsute/main amd64 libxdmcp6 amd64 1:1.1.3-0ubuntu1 [10.6 kB] Get:22 http://ftpmaster.internal/ubuntu hirsute/main amd64 libxcb1 amd64 1.14-2 [44.7 kB] Get:23 http://ftpmaster.internal/ubuntu hirsute/main amd64 libx11-data all 2:1.6.12-1 [113 kB] Get:24 http://ftpmaster.internal/ubuntu hirsute/main amd64 libx11-6 amd64 2:1.6.12-1 [574 kB] Get:25 http://ftpmaster.internal/ubuntu hirsute/main amd64 libxext6 amd64 2:1.3.4-0ubuntu1 [29.1 kB] Get:26 http://ftpmaster.internal/ubuntu hirsute/main amd64 libxmuu1 amd64 2:1.1.3-0ubuntu1 [9728 B] Get:27 http://ftpmaster.internal/ubuntu hirsute/main amd64 xauth amd64 1:1.1-0ubuntu1 [25.0 kB] Get:28 http://ftpmaster.internal/ubuntu hirsute/main amd64 libsigsegv2 amd64 2.12-2build1 [13.9 kB] Get:29 http://ftpmaster.internal/ubuntu hirsute/main amd64 m4 amd64 1.4.18-4 [199 kB] Get:30 http://ftpmaster.internal/ubuntu hirsute/main amd64 autoconf all 2.69-11.1 [321 kB] Get:31 http://ftpmaster.internal/ubuntu hirsute/main amd64 autotools-dev all 20180224.1 [39.6 kB] Get:32 http://ftpmaster.internal/ubuntu hirsute/main amd64 automake all 1:1.16.2-4ubuntu1 [548 kB] Get:33 http://ftpmaster.internal/ubuntu hirsute/main amd64 autopoint all 0.19.8.1-10build1 [412 kB] Get:34 http://ftpmaster.internal/ubuntu hirsute/main amd64 dctrl-tools amd64 2.24-3 [61.5 kB] Get:35 http://ftpmaster.internal/ubuntu hirsute/main amd64 libtool all 2.4.6-14 [161 kB] Get:36 http://ftpmaster.internal/ubuntu hirsute/main amd64 dh-autoreconf all 19 [16.1 kB] Get:37 http://ftpmaster.internal/ubuntu hirsute/main amd64 libdebhelper-perl all 13.2.1ubuntu1 [63.6 kB] Get:38 http://ftpmaster.internal/ubuntu hirsute/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB] Get:39 http://ftpmaster.internal/ubuntu hirsute/main amd64 libsub-override-perl all 0.09-2 [9532 B] Get:40 http://ftpmaster.internal/ubuntu hirsute/main amd64 libfile-stripnondeterminism-perl all 1.9.0-1 [17.2 kB] Get:41 http://ftpmaster.internal/ubuntu hirsute/main amd64 dh-strip-nondeterminism all 1.9.0-1 [5192 B] Get:42 http://ftpmaster.internal/ubuntu hirsute/main amd64 dwz amd64 0.13-5 [151 kB] Get:43 http://ftpmaster.internal/ubuntu hirsute/main amd64 libcroco3 amd64 0.6.13-1 [82.5 kB] Get:44 http://ftpmaster.internal/ubuntu hirsute/main amd64 gettext amd64 0.19.8.1-10build1 [895 kB] Get:45 http://ftpmaster.internal/ubuntu hirsute/main amd64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:46 http://ftpmaster.internal/ubuntu hirsute/main amd64 po-debconf all 1.0.21 [233 kB] Get:47 http://ftpmaster.internal/ubuntu hirsute/main amd64 debhelper all 13.2.1ubuntu1 [879 kB] Get:48 http://ftpmaster.internal/ubuntu hirsute/main amd64 zip amd64 3.0-11build1 [167 kB] Get:49 http://ftpmaster.internal/ubuntu hirsute/main amd64 unzip amd64 6.0-25ubuntu1 [169 kB] Get:50 http://ftpmaster.internal/ubuntu hirsute/main amd64 libpaper1 amd64 1.1.28 [13.0 kB] Get:51 http://ftpmaster.internal/ubuntu hirsute/main amd64 libpaper-utils amd64 1.1.28 [8400 B] Get:52 http://ftpmaster.internal/ubuntu hirsute/main amd64 xdg-utils all 1.1.3-2ubuntu1 [61.6 kB] Get:53 http://ftpmaster.internal/ubuntu hirsute/main amd64 libblas3 amd64 3.9.0-3ubuntu1 [142 kB] Get:54 http://ftpmaster.internal/ubuntu hirsute/main amd64 libbrotli1 amd64 1.0.9-2build1 [275 kB] Get:55 http://ftpmaster.internal/ubuntu hirsute/main amd64 libfreetype6 amd64 2.10.2+dfsg-3ubuntu1 [349 kB] Get:56 http://ftpmaster.internal/ubuntu hirsute/main amd64 fonts-dejavu-core all 2.37-2 [1041 kB] Get:57 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 fontconfig-config all 2.13.1-4.2ubuntu2 [28.6 kB] Get:58 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libfontconfig1 amd64 2.13.1-4.2ubuntu2 [117 kB] Get:59 http://ftpmaster.internal/ubuntu hirsute/main amd64 libpixman-1-0 amd64 0.38.4-0ubuntu1 [227 kB] Get:60 http://ftpmaster.internal/ubuntu hirsute/main amd64 libxcb-render0 amd64 1.14-2 [14.8 kB] Get:61 http://ftpmaster.internal/ubuntu hirsute/main amd64 libxcb-shm0 amd64 1.14-2 [5584 B] Get:62 http://ftpmaster.internal/ubuntu hirsute/main amd64 libxrender1 amd64 1:0.9.10-1 [18.7 kB] Get:63 http://ftpmaster.internal/ubuntu hirsute/main amd64 libcairo2 amd64 1.16.0-4ubuntu1 [583 kB] Get:64 http://ftpmaster.internal/ubuntu hirsute/main amd64 libroken18-heimdal amd64 7.7.0+dfsg-2 [41.8 kB] Get:65 http://ftpmaster.internal/ubuntu hirsute/main amd64 libasn1-8-heimdal amd64 7.7.0+dfsg-2 [181 kB] Get:66 http://ftpmaster.internal/ubuntu hirsute/main amd64 libheimbase1-heimdal amd64 7.7.0+dfsg-2 [29.7 kB] Get:67 http://ftpmaster.internal/ubuntu hirsute/main amd64 libhcrypto4-heimdal amd64 7.7.0+dfsg-2 [88.0 kB] Get:68 http://ftpmaster.internal/ubuntu hirsute/main amd64 libwind0-heimdal amd64 7.7.0+dfsg-2 [47.6 kB] Get:69 http://ftpmaster.internal/ubuntu hirsute/main amd64 libhx509-5-heimdal amd64 7.7.0+dfsg-2 [107 kB] Get:70 http://ftpmaster.internal/ubuntu hirsute/main amd64 libkrb5-26-heimdal amd64 7.7.0+dfsg-2 [207 kB] Get:71 http://ftpmaster.internal/ubuntu hirsute/main amd64 libheimntlm0-heimdal amd64 7.7.0+dfsg-2 [15.1 kB] Get:72 http://ftpmaster.internal/ubuntu hirsute/main amd64 libgssapi3-heimdal amd64 7.7.0+dfsg-2 [96.5 kB] Get:73 http://ftpmaster.internal/ubuntu hirsute/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2ubuntu1 [14.7 kB] Get:74 http://ftpmaster.internal/ubuntu hirsute/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2ubuntu1 [49.3 kB] Get:75 http://ftpmaster.internal/ubuntu hirsute/main amd64 libldap-2.4-2 amd64 2.4.53+dfsg-1ubuntu1 [158 kB] Get:76 http://ftpmaster.internal/ubuntu hirsute/main amd64 libnghttp2-14 amd64 1.41.0-3 [67.9 kB] Get:77 http://ftpmaster.internal/ubuntu hirsute/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2build2 [55.0 kB] Get:78 http://ftpmaster.internal/ubuntu hirsute/main amd64 libssh-4 amd64 0.9.4-1ubuntu3 [171 kB] Get:79 http://ftpmaster.internal/ubuntu hirsute/main amd64 libcurl4 amd64 7.68.0-1ubuntu4 [233 kB] Get:80 http://ftpmaster.internal/ubuntu hirsute/main amd64 libjpeg-turbo8 amd64 2.0.3-0ubuntu2 [118 kB] Get:81 http://ftpmaster.internal/ubuntu hirsute/main amd64 libjpeg8 amd64 8c-2ubuntu8 [2194 B] Get:82 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libgfortran5 amd64 10.2.0-16ubuntu1 [735 kB] Get:83 http://ftpmaster.internal/ubuntu hirsute/main amd64 liblapack3 amd64 3.9.0-3ubuntu1 [2152 kB] Get:84 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 fontconfig amd64 2.13.1-4.2ubuntu2 [171 kB] Get:85 http://ftpmaster.internal/ubuntu hirsute/main amd64 libgraphite2-3 amd64 1.3.14-1 [73.7 kB] Get:86 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libharfbuzz0b amd64 2.6.7-1ubuntu1 [341 kB] Get:87 http://ftpmaster.internal/ubuntu hirsute/main amd64 libthai-data all 0.1.28-3 [134 kB] Get:88 http://ftpmaster.internal/ubuntu hirsute/main amd64 libdatrie1 amd64 0.2.12-3 [18.7 kB] Get:89 http://ftpmaster.internal/ubuntu hirsute/main amd64 libthai0 amd64 0.1.28-3 [18.1 kB] Get:90 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libpango-1.0-0 amd64 1.46.2-2 [169 kB] Get:91 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libpangoft2-1.0-0 amd64 1.46.2-2 [36.3 kB] Get:92 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libpangocairo-1.0-0 amd64 1.46.2-2 [25.0 kB] Get:93 http://ftpmaster.internal/ubuntu hirsute/main amd64 libtcl8.6 amd64 8.6.10+dfsg-1 [902 kB] Get:94 http://ftpmaster.internal/ubuntu hirsute/main amd64 libjbig0 amd64 2.1-3.1build1 [26.7 kB] Get:95 http://ftpmaster.internal/ubuntu hirsute/main amd64 libwebp6 amd64 0.6.1-2 [185 kB] Get:96 http://ftpmaster.internal/ubuntu hirsute/main amd64 libtiff5 amd64 4.1.0+git191117-2build1 [161 kB] Get:97 http://ftpmaster.internal/ubuntu hirsute/main amd64 libxft2 amd64 2.3.3-0ubuntu1 [39.2 kB] Get:98 http://ftpmaster.internal/ubuntu hirsute/main amd64 x11-common all 1:7.7+19ubuntu15 [22.2 kB] Get:99 http://ftpmaster.internal/ubuntu hirsute/main amd64 libxss1 amd64 1:1.2.3-1 [8140 B] Get:100 http://ftpmaster.internal/ubuntu hirsute/main amd64 libtk8.6 amd64 8.6.10-1 [714 kB] Get:101 http://ftpmaster.internal/ubuntu hirsute/main amd64 libice6 amd64 2:1.0.10-1 [40.2 kB] Get:102 http://ftpmaster.internal/ubuntu hirsute/main amd64 libsm6 amd64 2:1.2.3-1 [16.1 kB] Get:103 http://ftpmaster.internal/ubuntu hirsute/main amd64 libxt6 amd64 1:1.2.0-1 [160 kB] Get:104 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-base-core amd64 4.0.2-1build1 [25.0 MB] Get:105 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libgfortran-10-dev amd64 10.2.0-16ubuntu1 [778 kB] Get:106 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 gfortran-10 amd64 10.2.0-16ubuntu1 [64.0 MB] Get:107 http://ftpmaster.internal/ubuntu hirsute/main amd64 gfortran amd64 4:10.2.0-1ubuntu1 [1372 B] Get:108 http://ftpmaster.internal/ubuntu hirsute/main amd64 libblas-dev amd64 3.9.0-3ubuntu1 [147 kB] Get:109 http://ftpmaster.internal/ubuntu hirsute/main amd64 liblapack-dev amd64 3.9.0-3ubuntu1 [4233 kB] Get:110 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libncurses-dev amd64 6.2+20200918-1 [346 kB] Get:111 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libncurses5-dev amd64 6.2+20200918-1 [992 B] Get:112 http://ftpmaster.internal/ubuntu hirsute/main amd64 libreadline-dev amd64 8.0-4 [141 kB] Get:113 http://ftpmaster.internal/ubuntu hirsute/main amd64 libjpeg-turbo8-dev amd64 2.0.3-0ubuntu2 [238 kB] Get:114 http://ftpmaster.internal/ubuntu hirsute/main amd64 libjpeg8-dev amd64 8c-2ubuntu8 [1552 B] Get:115 http://ftpmaster.internal/ubuntu hirsute/main amd64 libjpeg-dev amd64 8c-2ubuntu8 [1546 B] Get:116 http://ftpmaster.internal/ubuntu hirsute/main amd64 libpcre2-16-0 amd64 10.34-7 [181 kB] Get:117 http://ftpmaster.internal/ubuntu hirsute/main amd64 libpcre2-32-0 amd64 10.34-7 [169 kB] Get:118 http://ftpmaster.internal/ubuntu hirsute/main amd64 libpcre2-posix2 amd64 10.34-7 [5992 B] Get:119 http://ftpmaster.internal/ubuntu hirsute/main amd64 libpcre2-dev amd64 10.34-7 [670 kB] Get:120 http://ftpmaster.internal/ubuntu hirsute/main amd64 libpcre16-3 amd64 2:8.39-13 [150 kB] Get:121 http://ftpmaster.internal/ubuntu hirsute/main amd64 libpcre32-3 amd64 2:8.39-13 [140 kB] Get:122 http://ftpmaster.internal/ubuntu hirsute/main amd64 libpcrecpp0v5 amd64 2:8.39-13 [15.5 kB] Get:123 http://ftpmaster.internal/ubuntu hirsute/main amd64 libpcre3-dev amd64 2:8.39-13 [541 kB] Get:124 http://ftpmaster.internal/ubuntu hirsute/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2ubuntu4 [156 kB] Get:125 http://ftpmaster.internal/ubuntu hirsute/main amd64 libpng-dev amd64 1.6.37-3 [179 kB] Get:126 http://ftpmaster.internal/ubuntu hirsute/main amd64 libbz2-dev amd64 1.0.8-4ubuntu2 [30.2 kB] Get:127 http://ftpmaster.internal/ubuntu hirsute/main amd64 liblzma-dev amd64 5.2.4-1ubuntu1 [147 kB] Get:128 http://ftpmaster.internal/ubuntu hirsute/main amd64 icu-devtools amd64 67.1-4 [190 kB] Get:129 http://ftpmaster.internal/ubuntu hirsute/main amd64 libicu-dev amd64 67.1-4 [9593 kB] Get:130 http://ftpmaster.internal/ubuntu hirsute/main amd64 pkg-config amd64 0.29.2-1ubuntu1 [46.2 kB] Get:131 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-base-dev all 4.0.2-1build1 [4524 B] Get:132 http://ftpmaster.internal/ubuntu hirsute/main amd64 libfile-which-perl all 1.23-1 [13.8 kB] Get:133 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libswitch-perl all 2.17-2 [18.8 kB] Get:134 http://ftpmaster.internal/ubuntu hirsute/universe amd64 dh-r all 20200710ubuntu1 [35.5 kB] Get:135 http://ftpmaster.internal/ubuntu hirsute-proposed/universe amd64 r-bioc-biocgenerics all 0.36.0-1 [646 kB] Get:136 http://ftpmaster.internal/ubuntu hirsute-proposed/universe amd64 r-bioc-s4vectors amd64 0.28.0-1 [2027 kB] Get:137 http://ftpmaster.internal/ubuntu hirsute-proposed/universe amd64 r-bioc-iranges amd64 2.24.0-1 [2194 kB] Get:138 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-bitops amd64 1.0-6-5 [23.1 kB] Get:139 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-rcurl amd64 1.98-1.2-1build1 [789 kB] Get:140 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-bioc-genomeinfodbdata all 1.2.4-1 [10.7 MB] Get:141 http://ftpmaster.internal/ubuntu hirsute-proposed/universe amd64 r-bioc-genomeinfodb all 1.26.0-1 [3907 kB] Get:142 http://ftpmaster.internal/ubuntu hirsute-proposed/universe amd64 r-bioc-zlibbioc all 1.36.0+dfsg-1 [8908 B] Get:143 http://ftpmaster.internal/ubuntu hirsute-proposed/universe amd64 r-bioc-xvector amd64 0.30.0-1 [620 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 157 MB in 4s (39.0 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 12979 files and directories currently installed.) Preparing to unpack .../000-bsdextrautils_2.36-3ubuntu1_amd64.deb ... Unpacking bsdextrautils (2.36-3ubuntu1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../001-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../002-groff-base_1.22.4-5_amd64.deb ... Unpacking groff-base (1.22.4-5) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../003-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../004-man-db_2.9.3-2_amd64.deb ... Unpacking man-db (2.9.3-2) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../005-libmagic-mgc_1%3a5.38-5_amd64.deb ... Unpacking libmagic-mgc (1:5.38-5) ... 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Setting up libblas3:amd64 (3.9.0-3ubuntu1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libswitch-perl (2.17-2) ... Setting up libfreetype6:amd64 (2.10.2+dfsg-3ubuntu1) ... Setting up libx11-data (2:1.6.12-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2build2) ... Setting up libsigsegv2:amd64 (2.12-2build1) ... Setting up libfribidi0:amd64 (1.0.8-2) ... Setting up libpcre32-3:amd64 (2:8.39-13) ... Setting up libtcl8.6:amd64 (8.6.10+dfsg-1) ... Setting up autopoint (0.19.8.1-10build1) ... Setting up libwebp6:amd64 (0.6.1-2) ... Setting up icu-devtools (67.1-4) ... Setting up pkg-config (0.29.2-1ubuntu1) ... Setting up fonts-dejavu-core (2.37-2) ... Setting up ucf (3.0043) ... Setting up libpcre2-posix2:amd64 (10.34-7) ... Setting up libjpeg-turbo8:amd64 (2.0.3-0ubuntu2) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-2ubuntu1) ... Setting up libssh-4:amd64 (0.9.4-1ubuntu3) ... Setting up libgfortran5:amd64 (10.2.0-16ubuntu1) ... Setting up libroken18-heimdal:amd64 (7.7.0+dfsg-2) ... Setting up liblzma-dev:amd64 (5.2.4-1ubuntu1) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2ubuntu4) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libncurses5-dev:amd64 (6.2+20200918-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libharfbuzz0b:amd64 (2.6.7-1ubuntu1) ... Setting up libthai-data (0.1.28-3) ... Setting up libgfortran-10-dev:amd64 (10.2.0-16ubuntu1) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up libelf1:amd64 (0.181-1) ... Setting up libicu-dev:amd64 (67.1-4) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.2) ... Setting up xdg-utils (1.1.3-2ubuntu1) ... Setting up libblas-dev:amd64 (3.9.0-3ubuntu1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode Setting up dctrl-tools (2.24-3) ... Setting up libheimbase1-heimdal:amd64 (7.7.0+dfsg-2) ... Setting up libbz2-dev:amd64 (1.0.8-4ubuntu2) ... Setting up libjpeg8:amd64 (8c-2ubuntu8) ... Setting up libfile-stripnondeterminism-perl (1.9.0-1) ... Setting up libpaper1:amd64 (1.1.28) ... Creating config file /etc/papersize with new version Setting up libice6:amd64 (2:1.0.10-1) ... Setting up libjpeg-turbo8-dev:amd64 (2.0.3-0ubuntu2) ... Setting up libxdmcp6:amd64 (1:1.1.3-0ubuntu1) ... Setting up liblapack3:amd64 (3.9.0-3ubuntu1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxcb1:amd64 (1.14-2) ... Setting up libpcre2-dev:amd64 (10.34-7) ... Setting up libtool (2.4.6-14) ... Setting up libxcb-render0:amd64 (1.14-2) ... Setting up libpcre3-dev:amd64 (2:8.39-13) ... Setting up fontconfig-config (2.13.1-4.2ubuntu2) ... Setting up libasn1-8-heimdal:amd64 (7.7.0+dfsg-2) ... Setting up libpng-dev:amd64 (1.6.37-3) ... Setting up m4 (1.4.18-4) ... Setting up libxcb-shm0:amd64 (1.14-2) ... Setting up libpaper-utils (1.1.28) ... Setting up libhcrypto4-heimdal:amd64 (7.7.0+dfsg-2) ... Setting up libthai0:amd64 (0.1.28-3) ... Setting up libwind0-heimdal:amd64 (7.7.0+dfsg-2) ... Setting up liblapack-dev:amd64 (3.9.0-3ubuntu1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up gfortran-10 (10.2.0-16ubuntu1) ... Setting up libcroco3:amd64 (0.6.13-1) ... Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.9.0-1) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-5) ... Setting up libx11-6:amd64 (2:1.6.12-1) ... Setting up libtiff5:amd64 (4.1.0+git191117-2build1) ... Setting up libfontconfig1:amd64 (2.13.1-4.2ubuntu2) ... Setting up libjpeg8-dev:amd64 (8c-2ubuntu8) ... Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up libxmuu1:amd64 (2:1.1.3-0ubuntu1) ... Setting up automake (1:1.16.2-4ubuntu1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up fontconfig (2.13.1-4.2ubuntu2) ... Regenerating fonts cache... done. Setting up gettext (0.19.8.1-10build1) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libhx509-5-heimdal:amd64 (7.7.0+dfsg-2) ... Setting up libpango-1.0-0:amd64 (1.46.2-2) ... Setting up libjpeg-dev:amd64 (8c-2ubuntu8) ... Setting up libxext6:amd64 (2:1.3.4-0ubuntu1) ... Setting up man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up gfortran (4:10.2.0-1ubuntu1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:amd64 (1.16.0-4ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxt6:amd64 (1:1.2.0-1) ... Setting up xauth (1:1.1-0ubuntu1) ... Setting up libxss1:amd64 (1:1.2.3-1) ... Setting up libpangoft2-1.0-0:amd64 (1.46.2-2) ... Setting up libpangocairo-1.0-0:amd64 (1.46.2-2) ... Setting up libkrb5-26-heimdal:amd64 (7.7.0+dfsg-2) ... Setting up libxft2:amd64 (2.3.3-0ubuntu1) ... Setting up po-debconf (1.0.21) ... Setting up libtk8.6:amd64 (8.6.10-1) ... Setting up libheimntlm0-heimdal:amd64 (7.7.0+dfsg-2) ... Setting up libgssapi3-heimdal:amd64 (7.7.0+dfsg-2) ... Setting up libldap-2.4-2:amd64 (2.4.53+dfsg-1ubuntu1) ... Setting up libcurl4:amd64 (7.68.0-1ubuntu4) ... Setting up r-base-core (4.0.2-1build1) ... Creating config file /etc/R/Renviron with new version Setting up r-bioc-genomeinfodbdata (1.2.4-1) ... Setting up r-bioc-biocgenerics (0.36.0-1) ... Setting up r-base-dev (4.0.2-1build1) ... Setting up r-cran-bitops (1.0-6-5) ... Setting up r-bioc-zlibbioc (1.36.0+dfsg-1) ... Setting up r-bioc-s4vectors (0.28.0-1) ... Setting up r-bioc-iranges (2.24.0-1) ... Setting up r-cran-rcurl (1.98-1.2-1build1) ... Setting up r-bioc-genomeinfodb (1.26.0-1) ... Setting up r-bioc-xvector (0.30.0-1) ... Setting up dh-autoreconf (19) ... Setting up debhelper (13.2.1ubuntu1) ... Setting up dh-r (20200710ubuntu1) ... Setting up sbuild-build-depends-r-bioc-genomicranges-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.32-0ubuntu4) ... Processing triggers for systemd (246.6-2ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.15.0-122-generic amd64 (x86_64) Toolchain package versions: binutils_2.35.1-2ubuntu1 dpkg-dev_1.20.5ubuntu2 g++-10_10.2.0-16ubuntu1 gcc-10_10.2.0-16ubuntu1 libc6-dev_2.32-0ubuntu4 libstdc++-10-dev_10.2.0-16ubuntu1 libstdc++6_10.2.0-16ubuntu1 linux-libc-dev_5.8.0-26.27 Package versions: adduser_3.118ubuntu2 advancecomp_2.1-2.1build1 apt_2.1.11 autoconf_2.69-11.1 automake_1:1.16.2-4ubuntu1 autopoint_0.19.8.1-10build1 autotools-dev_20180224.1 base-files_11ubuntu16 base-passwd_3.5.48 bash_5.0-6ubuntu2 binutils_2.35.1-2ubuntu1 binutils-common_2.35.1-2ubuntu1 binutils-x86-64-linux-gnu_2.35.1-2ubuntu1 bsdextrautils_2.36-3ubuntu1 bsdutils_1:2.36-3ubuntu1 build-essential_12.8ubuntu3 bzip2_1.0.8-4ubuntu2 ca-certificates_20200601 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libsemanage-common_3.1-1build1 libsemanage1_3.1-1build1 libsepol1_3.1-1 libsigsegv2_2.12-2build1 libsm6_2:1.2.3-1 libsmartcols1_2.36-3ubuntu1 libsqlite3-0_3.33.0-1 libss2_1.45.6-1ubuntu1 libssh-4_0.9.4-1ubuntu3 libssl1.1_1.1.1f-1ubuntu4 libstdc++-10-dev_10.2.0-16ubuntu1 libstdc++6_10.2.0-16ubuntu1 libsub-override-perl_0.09-2 libswitch-perl_2.17-2 libsystemd0_246.6-2ubuntu1 libtasn1-6_4.16.0-2 libtcl8.6_8.6.10+dfsg-1 libthai-data_0.1.28-3 libthai0_0.1.28-3 libtiff5_4.1.0+git191117-2build1 libtinfo6_6.2+20200918-1 libtirpc-common_1.2.6-3 libtirpc-dev_1.2.6-3 libtirpc3_1.2.6-3 libtk8.6_8.6.10-1 libtool_2.4.6-14 libtsan0_10.2.0-16ubuntu1 libubsan1_10.2.0-16ubuntu1 libuchardet0_0.0.7-1 libudev1_246.6-2ubuntu1 libunistring2_0.9.10-4 libuuid1_2.36-3ubuntu1 libwebp6_0.6.1-2 libwind0-heimdal_7.7.0+dfsg-2 libx11-6_2:1.6.12-1 libx11-data_2:1.6.12-1 libxau6_1:1.0.9-0ubuntu1 libxcb-render0_1.14-2 libxcb-shm0_1.14-2 libxcb1_1.14-2 libxdmcp6_1:1.1.3-0ubuntu1 libxext6_2:1.3.4-0ubuntu1 libxft2_2.3.3-0ubuntu1 libxml2_2.9.10+dfsg-6.2 libxmuu1_2:1.1.3-0ubuntu1 libxrender1_1:0.9.10-1 libxss1_1:1.2.3-1 libxt6_1:1.2.0-1 libzstd1_1.4.5+dfsg-4 linux-libc-dev_5.8.0-26.27 lockfile-progs_0.1.18 login_1:4.8.1-1ubuntu6 logsave_1.45.6-1ubuntu1 lsb-base_11.1.0ubuntu2 m4_1.4.18-4 make_4.3-4ubuntu1 man-db_2.9.3-2 mawk_1.3.4.20200120-2 mount_2.36-3ubuntu1 ncurses-base_6.2+20200918-1 ncurses-bin_6.2+20200918-1 openssl_1.1.1f-1ubuntu4 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu6 patch_2.7.6-6 perl_5.30.3-4 perl-base_5.30.3-4 perl-modules-5.30_5.30.3-4 pinentry-curses_1.1.0-4build1 pkg-config_0.29.2-1ubuntu1 pkgbinarymangler_146 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.16-5ubuntu2 r-base-core_4.0.2-1build1 r-base-dev_4.0.2-1build1 r-bioc-biocgenerics_0.36.0-1 r-bioc-genomeinfodb_1.26.0-1 r-bioc-genomeinfodbdata_1.2.4-1 r-bioc-iranges_2.24.0-1 r-bioc-s4vectors_0.28.0-1 r-bioc-xvector_0.30.0-1 r-bioc-zlibbioc_1.36.0+dfsg-1 r-cran-bitops_1.0-6-5 r-cran-rcurl_1.98-1.2-1build1 readline-common_8.0-4 rpcsvc-proto_1.4.2-0ubuntu4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-genomicranges-dummy_0.invalid.0 sed_4.7-1ubuntu1 sensible-utils_0.0.13 systemd_246.6-2ubuntu1 systemd-sysv_246.6-2ubuntu1 systemd-timesyncd_246.6-2ubuntu1 sysvinit-utils_2.96-5ubuntu1 tar_1.30+dfsg-7 tzdata_2020d-1ubuntu1 ubuntu-keyring_2020.06.17.1 ucf_3.0043 unzip_6.0-25ubuntu1 util-linux_2.36-3ubuntu1 x11-common_1:7.7+19ubuntu15 xauth_1:1.1-0ubuntu1 xdg-utils_1.1.3-2ubuntu1 xz-utils_5.2.4-1ubuntu1 zip_3.0-11build1 zlib1g_1:1.2.11.dfsg-2ubuntu4 zlib1g-dev_1:1.2.11.dfsg-2ubuntu4 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Mon Nov 2 12:57:03 2020 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./r-bioc-genomicranges_1.42.0+dfsg-1.dsc dpkg-source: info: extracting r-bioc-genomicranges in /<>/r-bioc-genomicranges-1.42.0+dfsg dpkg-source: info: unpacking r-bioc-genomicranges_1.42.0+dfsg.orig.tar.xz dpkg-source: info: unpacking r-bioc-genomicranges_1.42.0+dfsg-1.debian.tar.xz Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-20240098 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-20240098 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-20240098 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package r-bioc-genomicranges dpkg-buildpackage: info: source version 1.42.0+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_auto_install -O--buildsystem=R I: R packages needed for DEP8: runit, digest, annotate, summarizedexperiment I: R Package: GenomicRanges Version: 1.42.0 I: Building using R version 4.0.2-1build1 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Mon, 02 Nov 2020 13:51:25 +0100 mkdir -p /<>/r-bioc-genomicranges-1.42.0\+dfsg/debian/r-bioc-genomicranges/usr/lib/R/site-library R CMD INSTALL -l /<>/r-bioc-genomicranges-1.42.0\+dfsg/debian/r-bioc-genomicranges/usr/lib/R/site-library --clean . "--built-timestamp='Mon, 02 Nov 2020 13:51:25 +0100'" * installing *source* package ‘GenomicRanges’ ... ** using staged installation ** libs make[1]: Entering directory '/<>/r-bioc-genomicranges-1.42.0+dfsg/src' gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-PsrVor/r-base-4.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c IRanges_stubs.c -o IRanges_stubs.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-PsrVor/r-base-4.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c R_init_GenomicRanges.c -o R_init_GenomicRanges.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-PsrVor/r-base-4.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c S4Vectors_stubs.c -o S4Vectors_stubs.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-PsrVor/r-base-4.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c transcript_utils.c -o transcript_utils.o gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o GenomicRanges.so IRanges_stubs.o R_init_GenomicRanges.o S4Vectors_stubs.o transcript_utils.o -L/usr/lib/R/lib -lR make[1]: Leaving directory '/<>/r-bioc-genomicranges-1.42.0+dfsg/src' make[1]: Entering directory '/<>/r-bioc-genomicranges-1.42.0+dfsg/src' make[1]: Leaving directory '/<>/r-bioc-genomicranges-1.42.0+dfsg/src' installing to /<>/r-bioc-genomicranges-1.42.0+dfsg/debian/r-bioc-genomicranges/usr/lib/R/site-library/00LOCK-r-bioc-genomicranges-1.42.0+dfsg/00new/GenomicRanges/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GenomicRanges) W: Ignoring specified R dependency: R (>= 2.10) I: Using r-bioc-biocgenerics for Depends:BiocGenerics (>= 0.25.3) I: Using r-bioc-s4vectors for Depends:S4Vectors (>= 0.27.12) I: Using r-bioc-iranges for Depends:IRanges (>= 2.23.9) I: Using r-bioc-genomeinfodb for Depends:GenomeInfoDb (>= 1.15.2) I: Using r-cran-runit for Recommends:runit I: Using r-cran-digest for Recommends:digest I: Using r-bioc-annotate for Recommends:annotate I: Using r-bioc-summarizedexperiment for Recommends:summarizedexperiment I: Using r-cran-matrix for Suggests:Matrix I: Using r-bioc-biobase for Suggests:Biobase I: Using r-bioc-annotationdbi for Suggests:AnnotationDbi I: Using r-bioc-biostrings for Suggests:Biostrings (>= 2.25.3) I: Using r-bioc-rsamtools for Suggests:Rsamtools (>= 1.13.53) I: Using r-bioc-genomicalignments for Suggests:GenomicAlignments I: Using r-bioc-rtracklayer for Suggests:rtracklayer I: Using r-bioc-bsgenome for Suggests:BSgenome I: Using r-bioc-genomicfeatures for Suggests:GenomicFeatures I: Using r-bioc-gviz for Suggests:Gviz I: Using r-bioc-variantannotation for Suggests:VariantAnnotation I: Using r-bioc-annotationhub for Suggests:AnnotationHub I: Using r-bioc-deseq2 for Suggests:DESeq2 I: Using r-bioc-dexseq for Suggests:DEXSeq I: Using r-bioc-edger for Suggests:edgeR W: Cannot find a debian package for Suggests:KEGGgraph W: Cannot find a debian package for Suggests:RNAseqData.HNRNPC.bam.chr14 W: Cannot find a debian package for Suggests:pasillaBamSubset W: Cannot find a debian package for Suggests:KEGG.db W: Cannot find a debian package for Suggests:hgu95av2.db W: Cannot find a debian package for Suggests:hgu95av2probe W: Cannot find a debian package for Suggests:BSgenome.Scerevisiae.UCSC.sacCer2 W: Cannot find a debian package for Suggests:BSgenome.Hsapiens.UCSC.hg19 W: Cannot find a debian package for Suggests:BSgenome.Mmusculus.UCSC.mm10 W: Cannot find a debian package for Suggests:TxDb.Athaliana.BioMart.plantsmart22 W: Cannot find a debian package for Suggests:TxDb.Dmelanogaster.UCSC.dm3.ensGene W: Cannot find a debian package for Suggests:TxDb.Hsapiens.UCSC.hg19.knownGene W: Cannot find a debian package for Suggests:TxDb.Mmusculus.UCSC.mm10.knownGene I: Using r-cran-knitr for Suggests:knitr I: Using r-bioc-biocstyle for Suggests:BiocStyle I: Using r-bioc-xvector for Imports:XVector (>= 0.29.2) I: Using r-bioc-s4vectors for LinkingTo:S4Vectors I: Using r-bioc-iranges for LinkingTo:IRanges I: BioConductor API version: r-api-bioc-3.12 I: Use r-bioc-genomicranges as Debian binary package for variables substitution dh_installdocs -O--buildsystem=R dh_installchangelogs -O--buildsystem=R dh_installsystemduser -O--buildsystem=R dh_perl -O--buildsystem=R dh_link -O--buildsystem=R dh_strip_nondeterminism -O--buildsystem=R dh_compress -O--buildsystem=R dh_fixperms -O--buildsystem=R dh_missing -O--buildsystem=R dh_dwz -a -O--buildsystem=R dh_strip -a -O--buildsystem=R dh_makeshlibs -a -O--buildsystem=R dh_shlibdeps -a -O--buildsystem=R dh_installdeb -O--buildsystem=R dh_gencontrol -O--buildsystem=R dh_md5sums -O--buildsystem=R dh_builddeb -O--buildsystem=R INFO: pkgstriptranslations version 146 INFO: pkgstriptranslations version 146 pkgstriptranslations: processing r-bioc-genomicranges (in debian/r-bioc-genomicranges); do_strip: , oemstrip: pkgstriptranslations: processing r-bioc-genomicranges-dbgsym (in debian/.debhelper/r-bioc-genomicranges/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/r-bioc-genomicranges/DEBIAN/control, package r-bioc-genomicranges, directory debian/r-bioc-genomicranges pkgstripfiles: processing control file: debian/.debhelper/r-bioc-genomicranges/dbgsym-root/DEBIAN/control, package r-bioc-genomicranges-dbgsym, directory debian/.debhelper/r-bioc-genomicranges/dbgsym-root dpkg-deb: building package 'r-bioc-genomicranges-dbgsym' in 'debian/.debhelper/scratch-space/build-r-bioc-genomicranges/r-bioc-genomicranges-dbgsym_1.42.0+dfsg-1_amd64.deb'. pkgstripfiles: Truncating usr/share/doc/r-bioc-genomicranges/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package r-bioc-genomicranges ... pkgstripfiles: No PNG files. dpkg-deb: building package 'r-bioc-genomicranges' in '../r-bioc-genomicranges_1.42.0+dfsg-1_amd64.deb'. Renaming r-bioc-genomicranges-dbgsym_1.42.0+dfsg-1_amd64.deb to r-bioc-genomicranges-dbgsym_1.42.0+dfsg-1_amd64.ddeb dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary -mLaunchpad Build Daemon >../r-bioc-genomicranges_1.42.0+dfsg-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2020-11-05T11:10:41Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ r-bioc-genomicranges_1.42.0+dfsg-1_amd64.changes: ------------------------------------------------- Format: 1.8 Date: Mon, 02 Nov 2020 13:51:25 +0100 Source: r-bioc-genomicranges Binary: r-bioc-genomicranges Architecture: amd64 Version: 1.42.0+dfsg-1 Distribution: hirsute-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: r-bioc-genomicranges - BioConductor representation and manipulation of genomic intervals Changes: r-bioc-genomicranges (1.42.0+dfsg-1) unstable; urgency=medium . * New upstream version * debhelper-compat 13 (routine-update) Checksums-Sha1: 20096cae29ab35dee8fabf297d55ed7aa29bf5e6 35988 r-bioc-genomicranges-dbgsym_1.42.0+dfsg-1_amd64.ddeb ffb100ceec10e79eb3d3b7e9efa8b0a282295b23 9583 r-bioc-genomicranges_1.42.0+dfsg-1_amd64.buildinfo ae8ff7b60a956c147ccea9dbf3e69f2f37a9087e 1860660 r-bioc-genomicranges_1.42.0+dfsg-1_amd64.deb Checksums-Sha256: 4d7754aed74acbfff164b25e74a1913aa46c68cc35160765a8692d13925cf1cc 35988 r-bioc-genomicranges-dbgsym_1.42.0+dfsg-1_amd64.ddeb 15f10e55d90c8303400e0bc98f359a0f7a44836de621781f804b82e14fd94393 9583 r-bioc-genomicranges_1.42.0+dfsg-1_amd64.buildinfo acfbc5f9ccf3e1ee15cfed2ed082d23ec7688cd7a1efbbf5377bc37a65ff296c 1860660 r-bioc-genomicranges_1.42.0+dfsg-1_amd64.deb Files: 245500452b537048a84f7168a42f5bcd 35988 debug optional r-bioc-genomicranges-dbgsym_1.42.0+dfsg-1_amd64.ddeb 675a830b36bb0d19d2af585e342849c5 9583 gnu-r optional r-bioc-genomicranges_1.42.0+dfsg-1_amd64.buildinfo 29e0cdcfc60fa4de84d12f413bbba6d8 1860660 gnu-r optional r-bioc-genomicranges_1.42.0+dfsg-1_amd64.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: r-bioc-genomicranges Binary: r-bioc-genomicranges r-bioc-genomicranges-dbgsym Architecture: amd64 Version: 1.42.0+dfsg-1 Checksums-Md5: 245500452b537048a84f7168a42f5bcd 35988 r-bioc-genomicranges-dbgsym_1.42.0+dfsg-1_amd64.ddeb 29e0cdcfc60fa4de84d12f413bbba6d8 1860660 r-bioc-genomicranges_1.42.0+dfsg-1_amd64.deb Checksums-Sha1: 20096cae29ab35dee8fabf297d55ed7aa29bf5e6 35988 r-bioc-genomicranges-dbgsym_1.42.0+dfsg-1_amd64.ddeb ae8ff7b60a956c147ccea9dbf3e69f2f37a9087e 1860660 r-bioc-genomicranges_1.42.0+dfsg-1_amd64.deb Checksums-Sha256: 4d7754aed74acbfff164b25e74a1913aa46c68cc35160765a8692d13925cf1cc 35988 r-bioc-genomicranges-dbgsym_1.42.0+dfsg-1_amd64.ddeb acfbc5f9ccf3e1ee15cfed2ed082d23ec7688cd7a1efbbf5377bc37a65ff296c 1860660 r-bioc-genomicranges_1.42.0+dfsg-1_amd64.deb Build-Origin: Ubuntu Build-Architecture: amd64 Build-Date: Thu, 05 Nov 2020 11:10:41 +0000 Build-Path: /<>/r-bioc-genomicranges-1.42.0+dfsg Build-Tainted-By: usr-local-has-programs Installed-Build-Depends: autoconf (= 2.69-11.1), automake (= 1:1.16.2-4ubuntu1), autopoint (= 0.19.8.1-10build1), autotools-dev (= 20180224.1), base-files (= 11ubuntu16), base-passwd (= 3.5.48), bash (= 5.0-6ubuntu2), binutils (= 2.35.1-2ubuntu1), binutils-common (= 2.35.1-2ubuntu1), binutils-x86-64-linux-gnu (= 2.35.1-2ubuntu1), bsdextrautils (= 2.36-3ubuntu1), bsdutils (= 1:2.36-3ubuntu1), build-essential (= 12.8ubuntu3), bzip2 (= 1.0.8-4ubuntu2), ca-certificates (= 20200601), coreutils (= 8.32-3ubuntu1), cpp (= 4:10.2.0-1ubuntu1), cpp-10 (= 10.2.0-16ubuntu1), dash (= 0.5.10.2-7), dctrl-tools (= 2.24-3), debconf (= 1.5.74), debhelper (= 13.2.1ubuntu1), debianutils (= 4.11.2), dh-autoreconf (= 19), dh-r (= 20200710ubuntu1), dh-strip-nondeterminism (= 1.9.0-1), diffutils (= 1:3.7-3ubuntu1), dpkg (= 1.20.5ubuntu2), dpkg-dev (= 1.20.5ubuntu2), dwz (= 0.13-5), file (= 1:5.38-5), findutils (= 4.7.0-1ubuntu2), fontconfig (= 2.13.1-4.2ubuntu2), fontconfig-config (= 2.13.1-4.2ubuntu2), fonts-dejavu-core (= 2.37-2), g++ (= 4:10.2.0-1ubuntu1), g++-10 (= 10.2.0-16ubuntu1), gcc (= 4:10.2.0-1ubuntu1), gcc-10 (= 10.2.0-16ubuntu1), gcc-10-base (= 10.2.0-16ubuntu1), gettext (= 0.19.8.1-10build1), gettext-base (= 0.19.8.1-10build1), gfortran (= 4:10.2.0-1ubuntu1), gfortran-10 (= 10.2.0-16ubuntu1), grep (= 3.4-1), groff-base (= 1.22.4-5), gzip (= 1.10-2ubuntu1), hostname (= 3.23), icu-devtools (= 67.1-4), init-system-helpers (= 1.58), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-8), libarchive-zip-perl (= 1.68-1), libasan6 (= 10.2.0-16ubuntu1), libasn1-8-heimdal (= 7.7.0+dfsg-2), libatomic1 (= 10.2.0-16ubuntu1), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-3ubuntu2), libaudit1 (= 1:2.8.5-3ubuntu2), libbinutils (= 2.35.1-2ubuntu1), libblas-dev (= 3.9.0-3ubuntu1), libblas3 (= 3.9.0-3ubuntu1), libblkid1 (= 2.36-3ubuntu1), libbrotli1 (= 1.0.9-2build1), libbsd0 (= 0.10.0-1), libbz2-1.0 (= 1.0.8-4ubuntu2), libbz2-dev (= 1.0.8-4ubuntu2), libc-bin (= 2.32-0ubuntu4), libc-dev-bin (= 2.32-0ubuntu4), libc6 (= 2.32-0ubuntu4), libc6-dev (= 2.32-0ubuntu4), libcairo2 (= 1.16.0-4ubuntu1), libcap-ng0 (= 0.7.9-2.2), libcc1-0 (= 10.2.0-16ubuntu1), libcom-err2 (= 1.45.6-1ubuntu1), libcroco3 (= 0.6.13-1), libcrypt-dev (= 1:4.4.17-1ubuntu1), libcrypt1 (= 1:4.4.17-1ubuntu1), libctf-nobfd0 (= 2.35.1-2ubuntu1), libctf0 (= 2.35.1-2ubuntu1), libcurl4 (= 7.68.0-1ubuntu4), libdatrie1 (= 0.2.12-3), libdb5.3 (= 5.3.28+dfsg1-0.6ubuntu3), libdebconfclient0 (= 0.254ubuntu1), libdebhelper-perl (= 13.2.1ubuntu1), libdpkg-perl (= 1.20.5ubuntu2), libelf1 (= 0.181-1), libexpat1 (= 2.2.10-1), libffi8ubuntu1 (= 3.4~20200819gead65ca871-0ubuntu3), libfile-stripnondeterminism-perl (= 1.9.0-1), libfile-which-perl (= 1.23-1), libfontconfig1 (= 2.13.1-4.2ubuntu2), libfreetype6 (= 2.10.2+dfsg-3ubuntu1), libfribidi0 (= 1.0.8-2), libgcc-10-dev (= 10.2.0-16ubuntu1), libgcc-s1 (= 10.2.0-16ubuntu1), libgcrypt20 (= 1.8.5-5ubuntu2), libgdbm-compat4 (= 1.18.1-5.1), libgdbm6 (= 1.18.1-5.1), libgfortran-10-dev (= 10.2.0-16ubuntu1), libgfortran5 (= 10.2.0-16ubuntu1), libglib2.0-0 (= 2.66.2-1), libgmp10 (= 2:6.2.0+dfsg-6ubuntu1), libgnutls30 (= 3.6.15-4ubuntu2), libgomp1 (= 10.2.0-16ubuntu1), libgpg-error0 (= 1.38-2), libgraphite2-3 (= 1.3.14-1), libgssapi-krb5-2 (= 1.17-10), libgssapi3-heimdal (= 7.7.0+dfsg-2), libharfbuzz0b (= 2.6.7-1ubuntu1), libhcrypto4-heimdal (= 7.7.0+dfsg-2), libheimbase1-heimdal (= 7.7.0+dfsg-2), libheimntlm0-heimdal (= 7.7.0+dfsg-2), libhogweed6 (= 3.6-2), libhx509-5-heimdal (= 7.7.0+dfsg-2), libice6 (= 2:1.0.10-1), libicu-dev (= 67.1-4), libicu67 (= 67.1-4), libidn2-0 (= 2.3.0-2), libisl22 (= 0.22.1-1), libitm1 (= 10.2.0-16ubuntu1), libjbig0 (= 2.1-3.1build1), libjpeg-dev (= 8c-2ubuntu8), libjpeg-turbo8 (= 2.0.3-0ubuntu2), libjpeg-turbo8-dev (= 2.0.3-0ubuntu2), libjpeg8 (= 8c-2ubuntu8), libjpeg8-dev (= 8c-2ubuntu8), libk5crypto3 (= 1.17-10), libkeyutils1 (= 1.6.1-2ubuntu1), libkrb5-26-heimdal (= 7.7.0+dfsg-2), libkrb5-3 (= 1.17-10), libkrb5support0 (= 1.17-10), liblapack-dev (= 3.9.0-3ubuntu1), liblapack3 (= 3.9.0-3ubuntu1), libldap-2.4-2 (= 2.4.53+dfsg-1ubuntu1), liblsan0 (= 10.2.0-16ubuntu1), liblz4-1 (= 1.9.2-2), liblzma-dev (= 5.2.4-1ubuntu1), liblzma5 (= 5.2.4-1ubuntu1), libmagic-mgc (= 1:5.38-5), libmagic1 (= 1:5.38-5), libmount1 (= 2.36-3ubuntu1), libmpc3 (= 1.2.0-1), libmpfr6 (= 4.1.0-3), libncurses-dev (= 6.2+20200918-1), libncurses5-dev (= 6.2+20200918-1), libncurses6 (= 6.2+20200918-1), libncursesw6 (= 6.2+20200918-1), libnettle8 (= 3.6-2), libnghttp2-14 (= 1.41.0-3), libnsl-dev (= 1.3.0-0ubuntu3), libnsl2 (= 1.3.0-0ubuntu3), libp11-kit0 (= 0.23.21-2build1), libpam-modules (= 1.3.1-5ubuntu6), libpam-modules-bin (= 1.3.1-5ubuntu6), libpam-runtime (= 1.3.1-5ubuntu6), libpam0g (= 1.3.1-5ubuntu6), libpango-1.0-0 (= 1.46.2-2), libpangocairo-1.0-0 (= 1.46.2-2), libpangoft2-1.0-0 (= 1.46.2-2), libpaper-utils (= 1.1.28), libpaper1 (= 1.1.28), libpcre16-3 (= 2:8.39-13), libpcre2-16-0 (= 10.34-7), libpcre2-32-0 (= 10.34-7), libpcre2-8-0 (= 10.34-7), libpcre2-dev (= 10.34-7), libpcre2-posix2 (= 10.34-7), libpcre3 (= 2:8.39-13), libpcre3-dev (= 2:8.39-13), libpcre32-3 (= 2:8.39-13), libpcrecpp0v5 (= 2:8.39-13), libperl5.30 (= 5.30.3-4), libpipeline1 (= 1.5.3-1), libpixman-1-0 (= 0.38.4-0ubuntu1), libpng-dev (= 1.6.37-3), libpng16-16 (= 1.6.37-3), libpsl5 (= 0.21.0-1.1ubuntu1), libquadmath0 (= 10.2.0-16ubuntu1), libreadline-dev (= 8.0-4), libreadline8 (= 8.0-4), libroken18-heimdal (= 7.7.0+dfsg-2), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build2), libsasl2-2 (= 2.1.27+dfsg-2ubuntu1), libsasl2-modules-db (= 2.1.27+dfsg-2ubuntu1), libseccomp2 (= 2.4.3-1ubuntu5), libselinux1 (= 3.1-2build1), libsigsegv2 (= 2.12-2build1), libsm6 (= 2:1.2.3-1), libsmartcols1 (= 2.36-3ubuntu1), libsqlite3-0 (= 3.33.0-1), libssh-4 (= 0.9.4-1ubuntu3), libssl1.1 (= 1.1.1f-1ubuntu4), libstdc++-10-dev (= 10.2.0-16ubuntu1), libstdc++6 (= 10.2.0-16ubuntu1), libsub-override-perl (= 0.09-2), libswitch-perl (= 2.17-2), libsystemd0 (= 246.6-2ubuntu1), libtasn1-6 (= 4.16.0-2), libtcl8.6 (= 8.6.10+dfsg-1), libthai-data (= 0.1.28-3), libthai0 (= 0.1.28-3), libtiff5 (= 4.1.0+git191117-2build1), libtinfo6 (= 6.2+20200918-1), libtirpc-common (= 1.2.6-3), libtirpc-dev (= 1.2.6-3), libtirpc3 (= 1.2.6-3), libtk8.6 (= 8.6.10-1), libtool (= 2.4.6-14), libtsan0 (= 10.2.0-16ubuntu1), libubsan1 (= 10.2.0-16ubuntu1), libuchardet0 (= 0.0.7-1), libudev1 (= 246.6-2ubuntu1), libunistring2 (= 0.9.10-4), libuuid1 (= 2.36-3ubuntu1), libwebp6 (= 0.6.1-2), libwind0-heimdal (= 7.7.0+dfsg-2), libx11-6 (= 2:1.6.12-1), libx11-data (= 2:1.6.12-1), libxau6 (= 1:1.0.9-0ubuntu1), libxcb-render0 (= 1.14-2), libxcb-shm0 (= 1.14-2), libxcb1 (= 1.14-2), libxdmcp6 (= 1:1.1.3-0ubuntu1), libxext6 (= 2:1.3.4-0ubuntu1), libxft2 (= 2.3.3-0ubuntu1), libxml2 (= 2.9.10+dfsg-6.2), libxmuu1 (= 2:1.1.3-0ubuntu1), libxrender1 (= 1:0.9.10-1), libxss1 (= 1:1.2.3-1), libxt6 (= 1:1.2.0-1), libzstd1 (= 1.4.5+dfsg-4), linux-libc-dev (= 5.8.0-26.27), login (= 1:4.8.1-1ubuntu6), lsb-base (= 11.1.0ubuntu2), m4 (= 1.4.18-4), make (= 4.3-4ubuntu1), man-db (= 2.9.3-2), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2+20200918-1), ncurses-bin (= 6.2+20200918-1), openssl (= 1.1.1f-1ubuntu4), patch (= 2.7.6-6), perl (= 5.30.3-4), perl-base (= 5.30.3-4), perl-modules-5.30 (= 5.30.3-4), pkg-config (= 0.29.2-1ubuntu1), po-debconf (= 1.0.21), r-base-core (= 4.0.2-1build1), r-base-dev (= 4.0.2-1build1), r-bioc-biocgenerics (= 0.36.0-1), r-bioc-genomeinfodb (= 1.26.0-1), r-bioc-genomeinfodbdata (= 1.2.4-1), r-bioc-iranges (= 2.24.0-1), r-bioc-s4vectors (= 0.28.0-1), r-bioc-xvector (= 0.30.0-1), r-bioc-zlibbioc (= 1.36.0+dfsg-1), r-cran-bitops (= 1.0-6-5), r-cran-rcurl (= 1.98-1.2-1build1), readline-common (= 8.0-4), rpcsvc-proto (= 1.4.2-0ubuntu4), sed (= 4.7-1ubuntu1), sensible-utils (= 0.0.13), sysvinit-utils (= 2.96-5ubuntu1), tar (= 1.30+dfsg-7), tzdata (= 2020d-1ubuntu1), ucf (= 3.0043), unzip (= 6.0-25ubuntu1), util-linux (= 2.36-3ubuntu1), x11-common (= 1:7.7+19ubuntu15), xauth (= 1:1.1-0ubuntu1), xdg-utils (= 1.1.3-2ubuntu1), xz-utils (= 5.2.4-1ubuntu1), zip (= 3.0-11build1), zlib1g (= 1:1.2.11.dfsg-2ubuntu4), zlib1g-dev (= 1:1.2.11.dfsg-2ubuntu4) Environment: DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1604321485" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ r-bioc-genomicranges_1.42.0+dfsg-1_amd64.deb -------------------------------------------- new Debian package, version 2.0. size 1860660 bytes: control archive=2584 bytes. 1437 bytes, 18 lines control 5332 bytes, 56 lines md5sums Package: r-bioc-genomicranges Version: 1.42.0+dfsg-1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian R Packages Maintainers Installed-Size: 2675 Depends: r-base-core (>= 4.0.2-1build1), r-api-4.0, r-api-bioc-3.12, r-bioc-biocgenerics (>= 0.25.3), r-bioc-s4vectors (>= 0.27.12), r-bioc-iranges (>= 2.23.9), r-bioc-genomeinfodb (>= 1.15.2), r-bioc-xvector (>= 0.29.2), libc6 (>= 2.4) Recommends: r-cran-runit, r-cran-digest, r-bioc-annotate, r-bioc-summarizedexperiment Suggests: r-cran-matrix, r-bioc-biobase, r-bioc-annotationdbi, r-bioc-biostrings (>= 2.25.3), r-bioc-rsamtools (>= 1.13.53), r-bioc-genomicalignments, r-bioc-rtracklayer, r-bioc-bsgenome, r-bioc-genomicfeatures, r-bioc-gviz, r-bioc-variantannotation, r-bioc-annotationhub, r-bioc-deseq2, r-bioc-dexseq, r-bioc-edger, r-cran-knitr, r-bioc-biocstyle Section: gnu-r Priority: optional Homepage: https://bioconductor.org/packages/GenomicRanges/ Description: BioConductor representation and manipulation of genomic intervals The ability to efficiently store genomic annotations and alignments is playing a central role when it comes to analyze high-throughput sequencing data (a.k.a. NGS data). 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+------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: binary Build-Space: n/a Build-Time: 25 Distribution: hirsute-proposed Host Architecture: amd64 Install-Time: 30 Job: r-bioc-genomicranges_1.42.0+dfsg-1.dsc Machine Architecture: amd64 Package: r-bioc-genomicranges Package-Time: 55 Source-Version: 1.42.0+dfsg-1 Space: n/a Status: successful Version: 1.42.0+dfsg-1 -------------------------------------------------------------------------------- Finished at 2020-11-05T11:10:41Z Build needed 00:00:55, no disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=hirsute --arch=amd64 PACKAGEBUILD-20240098 Scanning for processes to kill in build PACKAGEBUILD-20240098