https://launchpad.net/ubuntu/+source/r-bioc-delayedarray/0.8.0+dfsg-2/+build/16240608 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux lgw01-amd64-011 4.4.0-141-generic #167-Ubuntu SMP Wed Dec 5 10:40:15 UTC 2018 x86_64 Buildd toolchain package versions: launchpad-buildd_165 python-lpbuildd_165 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.6 dpkg-dev_1.18.4ubuntu1.5 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 6 Jan 17:10:30 ntpdate[1813]: adjust time server 10.211.37.1 offset 0.006196 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=disco --arch=i386 PACKAGEBUILD-16240608 /home/buildd/filecache-default/1b8bd95dfc080fb8062b439d66609df4d6cce84f Creating target for build PACKAGEBUILD-16240608 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=disco --arch=i386 PACKAGEBUILD-16240608 Starting target for build PACKAGEBUILD-16240608 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=disco --arch=i386 PACKAGEBUILD-16240608 'deb http://ftpmaster.internal/ubuntu disco main universe' 'deb http://ftpmaster.internal/ubuntu disco-security main universe' 'deb http://ftpmaster.internal/ubuntu disco-updates main universe' 'deb http://ftpmaster.internal/ubuntu disco-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-16240608 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=disco --arch=i386 PACKAGEBUILD-16240608 Updating target for build PACKAGEBUILD-16240608 Get:1 http://ftpmaster.internal/ubuntu disco InRelease [243 kB] Get:2 http://ftpmaster.internal/ubuntu disco-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu disco-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu disco-proposed InRelease [93.2 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main i386 Packages [994 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main Translation-en [514 kB] Get:7 http://ftpmaster.internal/ubuntu disco/universe i386 Packages [8982 kB] Get:8 http://ftpmaster.internal/ubuntu disco/universe Translation-en [5180 kB] Get:9 http://ftpmaster.internal/ubuntu disco-proposed/main i386 Packages [106 kB] Get:10 http://ftpmaster.internal/ubuntu disco-proposed/main Translation-en [48.1 kB] Get:11 http://ftpmaster.internal/ubuntu disco-proposed/universe i386 Packages [429 kB] Get:12 http://ftpmaster.internal/ubuntu disco-proposed/universe Translation-en [229 kB] Fetched 16.9 MB in 5s (3392 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt binutils binutils-common binutils-i686-linux-gnu cpp-8 dash dpkg dpkg-dev e2fslibs e2fsprogs g++-8 gcc-8 gcc-8-base init init-system-helpers libapt-pkg5.0 libasan5 libassuan0 libatomic1 libbinutils libcc1-0 libcom-err2 libcomerr2 libdpkg-perl libext2fs2 libgcc-8-dev libgcc1 libgnutls30 libgomp1 libgpg-error0 libitm1 libmpx2 libpng16-16 libquadmath0 libsqlite3-0 libss2 libstdc++-8-dev libstdc++6 libubsan1 libzstd1 linux-libc-dev sed tar tzdata 44 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 40.7 MB of archives. After this operation, 160 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu disco-proposed/main i386 tar i386 1.30+dfsg-4 [264 kB] Get:2 http://ftpmaster.internal/ubuntu disco/main i386 dpkg i386 1.19.2ubuntu2 [1124 kB] Get:3 http://ftpmaster.internal/ubuntu disco-proposed/main i386 dash i386 0.5.10.2-4 [90.9 kB] Get:4 http://ftpmaster.internal/ubuntu disco/main i386 sed i386 4.7-1 [193 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main i386 init-system-helpers all 1.56+nmu1 [38.2 kB] Get:6 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libgnutls30 i386 3.6.5-2ubuntu1 [770 kB] Get:7 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libubsan1 i386 8.2.0-13ubuntu1 [138 kB] Get:8 http://ftpmaster.internal/ubuntu disco-proposed/main i386 gcc-8-base i386 8.2.0-13ubuntu1 [18.6 kB] Get:9 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libgcc1 i386 1:8.2.0-13ubuntu1 [48.1 kB] Get:10 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libgomp1 i386 8.2.0-13ubuntu1 [80.7 kB] Get:11 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libitm1 i386 8.2.0-13ubuntu1 [30.8 kB] Get:12 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libatomic1 i386 8.2.0-13ubuntu1 [9608 B] Get:13 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libasan5 i386 8.2.0-13ubuntu1 [375 kB] Get:14 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libmpx2 i386 8.2.0-13ubuntu1 [13.0 kB] Get:15 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libquadmath0 i386 8.2.0-13ubuntu1 [208 kB] Get:16 http://ftpmaster.internal/ubuntu disco-proposed/main i386 cpp-8 i386 8.2.0-13ubuntu1 [7542 kB] Get:17 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libcc1-0 i386 8.2.0-13ubuntu1 [41.9 kB] Get:18 http://ftpmaster.internal/ubuntu disco-proposed/main i386 g++-8 i386 8.2.0-13ubuntu1 [8439 kB] Get:19 http://ftpmaster.internal/ubuntu disco-proposed/main i386 gcc-8 i386 8.2.0-13ubuntu1 [8331 kB] Get:20 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libgcc-8-dev i386 8.2.0-13ubuntu1 [2300 kB] Get:21 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libstdc++-8-dev i386 8.2.0-13ubuntu1 [1587 kB] Get:22 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libstdc++6 i386 8.2.0-13ubuntu1 [429 kB] Get:23 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libbinutils i386 2.31.1-11ubuntu1 [519 kB] Get:24 http://ftpmaster.internal/ubuntu disco-proposed/main i386 binutils-common i386 2.31.1-11ubuntu1 [194 kB] Get:25 http://ftpmaster.internal/ubuntu disco-proposed/main i386 binutils i386 2.31.1-11ubuntu1 [3392 B] Get:26 http://ftpmaster.internal/ubuntu disco-proposed/main i386 binutils-i686-linux-gnu i386 2.31.1-11ubuntu1 [1988 kB] Get:27 http://ftpmaster.internal/ubuntu disco/main i386 libzstd1 i386 1.3.8+dfsg-3 [225 kB] Get:28 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libapt-pkg5.0 i386 1.8.0~alpha3 [891 kB] Get:29 http://ftpmaster.internal/ubuntu disco-proposed/main i386 apt i386 1.8.0~alpha3 [1191 kB] Get:30 http://ftpmaster.internal/ubuntu disco/main i386 libext2fs2 i386 1.44.5-1 [186 kB] Get:31 http://ftpmaster.internal/ubuntu disco/main i386 e2fsprogs i386 1.44.5-1 [550 kB] Get:32 http://ftpmaster.internal/ubuntu disco/main i386 init i386 1.56+nmu1 [6076 B] Get:33 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libgpg-error0 i386 1.33-3 [62.0 kB] Get:34 http://ftpmaster.internal/ubuntu disco/main i386 libcom-err2 i386 1.44.5-1 [9708 B] Get:35 http://ftpmaster.internal/ubuntu disco/main i386 libss2 i386 1.44.5-1 [11.6 kB] Get:36 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libsqlite3-0 i386 3.26.0+fossilbc891ac6b-1 [566 kB] Get:37 http://ftpmaster.internal/ubuntu disco/main i386 tzdata all 2018i-1 [189 kB] Get:38 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libpng16-16 i386 1.6.36-2 [187 kB] Get:39 http://ftpmaster.internal/ubuntu disco/main i386 dpkg-dev all 1.19.2ubuntu2 [549 kB] Get:40 http://ftpmaster.internal/ubuntu disco/main i386 libdpkg-perl all 1.19.2ubuntu2 [227 kB] Get:41 http://ftpmaster.internal/ubuntu disco/main i386 e2fslibs i386 1.44.5-1 [2704 B] Get:42 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libassuan0 i386 2.5.2-1 [37.4 kB] Get:43 http://ftpmaster.internal/ubuntu disco/main i386 libcomerr2 i386 1.44.5-1 [2700 B] Get:44 http://ftpmaster.internal/ubuntu disco-proposed/main i386 linux-libc-dev i386 4.19.0-9.10 [1041 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 40.7 MB in 3s (12.7 MB/s) (Reading database ... 12659 files and directories currently installed.) 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Universal Time is now: Sun Jan 6 17:11:02 UTC 2019. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up init (1.56+nmu1) ... Setting up linux-libc-dev:i386 (4.19.0-9.10) ... Setting up libdpkg-perl (1.19.2ubuntu2) ... Setting up e2fsprogs (1.44.5-1) ... Setting up binutils-common:i386 (2.31.1-11ubuntu1) ... Setting up libmpx2:i386 (8.2.0-13ubuntu1) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... Setting up libsqlite3-0:i386 (3.26.0+fossilbc891ac6b-1) ... Setting up libcomerr2:i386 (1.44.5-1) ... Setting up libasan5:i386 (8.2.0-13ubuntu1) ... Setting up libassuan0:i386 (2.5.2-1) ... Setting up libitm1:i386 (8.2.0-13ubuntu1) ... Setting up libubsan1:i386 (8.2.0-13ubuntu1) ... Setting up libbinutils:i386 (2.31.1-11ubuntu1) ... Setting up binutils-i686-linux-gnu (2.31.1-11ubuntu1) ... Setting up libgcc-8-dev:i386 (8.2.0-13ubuntu1) ... Setting up binutils (2.31.1-11ubuntu1) ... Setting up libstdc++-8-dev:i386 (8.2.0-13ubuntu1) ... Setting up gcc-8 (8.2.0-13ubuntu1) ... Setting up g++-8 (8.2.0-13ubuntu1) ... Setting up dpkg-dev (1.19.2ubuntu2) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-16240608 i386 disco-proposed -c chroot:build-PACKAGEBUILD-16240608 --arch=i386 --dist=disco-proposed --nolog r-bioc-delayedarray_0.8.0+dfsg-2.dsc Initiating build PACKAGEBUILD-16240608 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-141-generic #167-Ubuntu SMP Wed Dec 5 10:40:15 UTC 2018 i686 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lgw01-amd64-011.buildd +==============================================================================+ | r-bioc-delayedarray 0.8.0+dfsg-2 (i386) 06 Jan 2019 17:11 | +==============================================================================+ Package: r-bioc-delayedarray Version: 0.8.0+dfsg-2 Source Version: 0.8.0+dfsg-2 Distribution: disco-proposed Machine Architecture: amd64 Host Architecture: i386 Build Architecture: i386 I: NOTICE: Log filtering will replace 'build/r-bioc-delayedarray-nqn171/r-bioc-delayedarray-0.8.0+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/r-bioc-delayedarray-nqn171' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-16240608/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- r-bioc-delayedarray_0.8.0+dfsg-2.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-i4EIYd/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-i4EIYd/apt_archive ./ InRelease Get:2 copy:/<>/resolver-i4EIYd/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-i4EIYd/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-i4EIYd/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-i4EIYd/apt_archive ./ Packages [528 B] Fetched 2861 B in 0s (103 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-i4EIYd/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12663 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_i386.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11~), dh-r, r-base-dev, r-cran-matrixstats, r-bioc-biocgenerics (>= 0.27.1), r-bioc-s4vectors (>= 0.19.15), r-bioc-iranges (>= 2.11.17), r-bioc-biocparallel (>= 1.16.5) Filtered Build-Depends: debhelper (>= 11~), dh-r, r-base-dev, r-cran-matrixstats, r-bioc-biocgenerics (>= 0.27.1), r-bioc-s4vectors (>= 0.19.15), r-bioc-iranges (>= 2.11.17), r-bioc-biocparallel (>= 1.16.5) dpkg-deb: building package 'sbuild-build-depends-r-bioc-delayedarray-dummy' in '/<>/resolver-nxzQu2/apt_archive/sbuild-build-depends-r-bioc-delayedarray-dummy.deb'. Ign:1 copy:/<>/resolver-nxzQu2/apt_archive ./ InRelease Get:2 copy:/<>/resolver-nxzQu2/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-nxzQu2/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-nxzQu2/apt_archive ./ Sources [302 B] Get:5 copy:/<>/resolver-nxzQu2/apt_archive ./ Packages [623 B] Fetched 3044 B in 0s (74.3 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install r-bioc-delayedarray build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-8 groff-base icu-devtools intltool-debian libarchive-zip-perl libasn1-8-heimdal libblas-dev libblas3 libbsd0 libbz2-dev libcairo2 libcroco3 libcurl4 libdatrie1 libelf1 libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-8-dev libgfortran5 libglib2.0-0 libgraphite2-3 libgssapi-krb5-2 libgssapi3-heimdal libharfbuzz0b libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libice6 libicu-dev libicu63 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 libldap-common liblzma-dev libmagic-mgc libmagic1 libncurses-dev libncurses5-dev libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libreadline-dev libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libtool libuchardet0 libwebp6 libwind0-heimdal libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db pkg-config po-debconf r-base-core r-base-dev r-bioc-biocgenerics r-bioc-biocparallel r-bioc-iranges r-bioc-s4vectors r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-lambda.r r-cran-matrixstats r-cran-snow ucf unzip x11-common xauth xdg-utils zip zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation debtags dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-multilib gfortran-doc gfortran-8-multilib gfortran-8-doc libgfortran5-dbg libcoarrays-dev groff liblapack-doc krb5-doc krb5-user icu-doc liblzma-doc ncurses-doc readline-doc tcl8.6 tk8.6 libtool-doc gcj-jdk m4-doc apparmor less www-browser libmail-box-perl ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo r-bioc-biobase r-bioc-genomicranges r-bioc-rsamtools r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-foreach r-cran-batchjobs r-cran-bbmisc r-cran-doparallel r-cran-rmpi r-bioc-variantannotation r-bioc-genomicalignments r-bioc-shortread r-cran-codetools r-cran-runit r-cran-knitr r-cran-batchtools r-cran-data.table r-bioc-genomicfeatures r-bioc-summarizedexperiment r-cran-matrix r-bioc-delayedarray r-bioc-graph r-cran-shiny r-cran-rmarkdown r-cran-jsonlite r-cran-base64enc r-cran-ggplot2 r-cran-rsprng r-cran-rlecuyer Recommended packages: devscripts curl | wget | lynx bzip2-doc libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales libpng-tools publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl r-recommended r-doc-html r-cran-runit r-bioc-xvector r-bioc-genomicranges r-cran-testit r-cran-codetools r-cran-survival r-cran-testthat libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-8 groff-base icu-devtools intltool-debian libarchive-zip-perl libasn1-8-heimdal libblas-dev libblas3 libbsd0 libbz2-dev libcairo2 libcroco3 libcurl4 libdatrie1 libelf1 libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-8-dev libgfortran5 libglib2.0-0 libgraphite2-3 libgssapi-krb5-2 libgssapi3-heimdal libharfbuzz0b libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libice6 libicu-dev libicu63 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 libldap-common liblzma-dev libmagic-mgc libmagic1 libncurses-dev libncurses5-dev libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libreadline-dev libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libtool libuchardet0 libwebp6 libwind0-heimdal libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db pkg-config po-debconf r-base-core r-base-dev r-bioc-biocgenerics r-bioc-biocparallel r-bioc-iranges r-bioc-s4vectors r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-lambda.r r-cran-matrixstats r-cran-snow sbuild-build-depends-r-bioc-delayedarray-dummy ucf unzip x11-common xauth xdg-utils zip zlib1g-dev 0 upgraded, 142 newly installed, 0 to remove and 0 not upgraded. Need to get 82.5 MB of archives. After this operation, 253 MB of additional disk space will be used. 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i386 3.0-11build1 [160 kB] Get:55 http://ftpmaster.internal/ubuntu disco/main i386 unzip i386 6.0-21ubuntu1 [157 kB] Get:56 http://ftpmaster.internal/ubuntu disco/main i386 libpaper1 i386 1.1.26 [13.0 kB] Get:57 http://ftpmaster.internal/ubuntu disco/main i386 libpaper-utils i386 1.1.26 [8516 B] Get:58 http://ftpmaster.internal/ubuntu disco/main i386 xdg-utils all 1.1.3-1ubuntu2 [60.5 kB] Get:59 http://ftpmaster.internal/ubuntu disco/main i386 libblas3 i386 3.8.0-2 [132 kB] Get:60 http://ftpmaster.internal/ubuntu disco/main i386 libfreetype6 i386 2.8.1-2ubuntu2 [351 kB] Get:61 http://ftpmaster.internal/ubuntu disco/main i386 fonts-dejavu-core all 2.37-1 [1041 kB] Get:62 http://ftpmaster.internal/ubuntu disco/main i386 fontconfig-config all 2.13.0-5ubuntu3 [28.4 kB] Get:63 http://ftpmaster.internal/ubuntu disco/main i386 libfontconfig1 i386 2.13.0-5ubuntu3 [122 kB] Get:64 http://ftpmaster.internal/ubuntu disco/main i386 libpixman-1-0 i386 0.36.0-1 [233 kB] Get:65 http://ftpmaster.internal/ubuntu disco/main i386 libxcb-render0 i386 1.13.1-2 [15.9 kB] Get:66 http://ftpmaster.internal/ubuntu disco/main i386 libxcb-shm0 i386 1.13.1-2 [5744 B] Get:67 http://ftpmaster.internal/ubuntu disco/main i386 libxrender1 i386 1:0.9.10-1 [19.9 kB] Get:68 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libcairo2 i386 1.16.0-2 [640 kB] Get:69 http://ftpmaster.internal/ubuntu disco/main i386 libroken18-heimdal i386 7.5.0+dfsg-2.1 [44.7 kB] Get:70 http://ftpmaster.internal/ubuntu disco/main i386 libasn1-8-heimdal i386 7.5.0+dfsg-2.1 [186 kB] Get:71 http://ftpmaster.internal/ubuntu disco/main i386 libheimbase1-heimdal i386 7.5.0+dfsg-2.1 [32.2 kB] Get:72 http://ftpmaster.internal/ubuntu disco/main i386 libhcrypto4-heimdal i386 7.5.0+dfsg-2.1 [93.4 kB] Get:73 http://ftpmaster.internal/ubuntu disco/main i386 libwind0-heimdal i386 7.5.0+dfsg-2.1 [48.4 kB] Get:74 http://ftpmaster.internal/ubuntu disco/main i386 libhx509-5-heimdal i386 7.5.0+dfsg-2.1 [117 kB] 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disco/main i386 libjpeg-turbo8-dev i386 2.0.0-0ubuntu2 [257 kB] Get:116 http://ftpmaster.internal/ubuntu disco/main i386 libjpeg8-dev i386 8c-2ubuntu8 [1546 B] Get:117 http://ftpmaster.internal/ubuntu disco/main i386 libjpeg-dev i386 8c-2ubuntu8 [1544 B] Get:118 http://ftpmaster.internal/ubuntu disco/main i386 libpcre16-3 i386 2:8.39-11 [148 kB] Get:119 http://ftpmaster.internal/ubuntu disco/main i386 libpcre32-3 i386 2:8.39-11 [140 kB] Get:120 http://ftpmaster.internal/ubuntu disco/main i386 libpcrecpp0v5 i386 2:8.39-11 [16.7 kB] Get:121 http://ftpmaster.internal/ubuntu disco/main i386 libpcre3-dev i386 2:8.39-11 [546 kB] Get:122 http://ftpmaster.internal/ubuntu disco/main i386 zlib1g-dev i386 1:1.2.11.dfsg-0ubuntu2 [178 kB] Get:123 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libpng-dev i386 1.6.36-2 [192 kB] Get:124 http://ftpmaster.internal/ubuntu disco/main i386 libbz2-dev i386 1.0.6-9 [31.2 kB] Get:125 http://ftpmaster.internal/ubuntu disco/main i386 liblzma-dev i386 5.2.2-1.3 [154 kB] Get:126 http://ftpmaster.internal/ubuntu disco/main i386 icu-devtools i386 63.1-5 [190 kB] Get:127 http://ftpmaster.internal/ubuntu disco/main i386 libicu-dev i386 63.1-5 [9373 kB] Get:128 http://ftpmaster.internal/ubuntu disco/main i386 pkg-config i386 0.29.1-0ubuntu2 [45.8 kB] Get:129 http://ftpmaster.internal/ubuntu disco/universe i386 r-base-dev all 3.5.2-1 [4520 B] Get:130 http://ftpmaster.internal/ubuntu disco/main i386 libfile-which-perl all 1.23-1 [13.8 kB] Get:131 http://ftpmaster.internal/ubuntu disco/universe i386 libswitch-perl all 2.17-2 [18.8 kB] Get:132 http://ftpmaster.internal/ubuntu disco/universe i386 dh-r all 20181206 [32.0 kB] Get:133 http://ftpmaster.internal/ubuntu disco/universe i386 r-bioc-biocgenerics all 0.28.0-2 [644 kB] Get:134 http://ftpmaster.internal/ubuntu disco/universe i386 r-cran-formatr all 1.5-3 [144 kB] Get:135 http://ftpmaster.internal/ubuntu disco/universe i386 r-cran-lambda.r all 1.2.3-2 [117 kB] Get:136 http://ftpmaster.internal/ubuntu disco/universe i386 r-cran-futile.options all 1.0.1-2 [19.8 kB] Get:137 http://ftpmaster.internal/ubuntu disco/universe i386 r-cran-futile.logger all 1.4.3-3 [102 kB] Get:138 http://ftpmaster.internal/ubuntu disco/universe i386 r-cran-snow all 1:0.4.3-1 [107 kB] Get:139 http://ftpmaster.internal/ubuntu disco-proposed/universe i386 r-bioc-biocparallel i386 1.16.5-1 [1062 kB] Get:140 http://ftpmaster.internal/ubuntu disco/universe i386 r-bioc-s4vectors i386 0.20.1-2 [1821 kB] Get:141 http://ftpmaster.internal/ubuntu disco/universe i386 r-bioc-iranges i386 2.16.0-1 [2124 kB] Get:142 http://ftpmaster.internal/ubuntu disco/universe i386 r-cran-matrixstats i386 0.54.0-1 [601 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 82.5 MB in 10s (8251 kB/s) Selecting previously unselected package libxau6:i386. 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No schema files found: doing nothing. Setting up libsasl2-modules-db:i386 (2.1.27~101-g0780600+dfsg-3ubuntu2) ... Setting up unzip (6.0-21ubuntu1) ... Setting up libsasl2-2:i386 (2.1.27~101-g0780600+dfsg-3ubuntu2) ... Setting up dctrl-tools (2.24-3) ... Setting up libdatrie1:i386 (0.2.12-1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up libjpeg-turbo8:i386 (2.0.0-0ubuntu2) ... Setting up libpipeline1:i386 (1.5.0-2) ... Setting up libroken18-heimdal:i386 (7.5.0+dfsg-2.1) ... Setting up librtmp1:i386 (2.4+20151223.gitfa8646d.1-2) ... Setting up libswitch-perl (2.17-2) ... Setting up m4 (1.4.18-2) ... Setting up libbsd0:i386 (0.9.1-1) ... Setting up libkrb5support0:i386 (1.16.2-1) ... Setting up ucf (3.0038+nmu1) ... Setting up libxml2:i386 (2.9.4+dfsg1-7ubuntu3) ... Setting up zip (3.0-11build1) ... Setting up libuchardet0:i386 (0.0.6-3) ... Setting up libfreetype6:i386 (2.8.1-2ubuntu2) ... Setting up libmagic-mgc (1:5.34-2) ... Setting up libmagic1:i386 (1:5.34-2) ... Setting up libgraphite2-3:i386 (1.3.12-1) ... Setting up libcroco3:i386 (0.6.12-3) ... Setting up pkg-config (0.29.1-0ubuntu2) ... Setting up libpixman-1-0:i386 (0.36.0-1) ... Setting up libblas3:i386 (3.8.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode Setting up libjpeg-turbo8-dev:i386 (2.0.0-0ubuntu2) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... Setting up dwz (0.12-3) ... Setting up autotools-dev (20180224.1) ... Setting up libheimbase1-heimdal:i386 (7.5.0+dfsg-2.1) ... Processing triggers for systemd (239-7ubuntu15) ... Setting up libfribidi0:i386 (1.0.5-3) ... Setting up libpcrecpp0v5:i386 (2:8.39-11) ... Setting up libpcre32-3:i386 (2:8.39-11) ... Setting up icu-devtools (63.1-5) ... Setting up libpcre16-3:i386 (2:8.39-11) ... Setting up libtcl8.6:i386 (8.6.9+dfsg-1) ... Setting up libthai-data (0.1.28-1) ... Setting up liblzma-dev:i386 (5.2.2-1.3) ... Setting up libxdmcp6:i386 (1:1.1.2-3) ... Setting up libkeyutils1:i386 (1.5.9-9.3) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up x11-common (1:7.7+19ubuntu8) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up xdg-utils (1.1.3-1ubuntu2) ... Setting up libncurses-dev:i386 (6.1+20180210-4ubuntu1) ... Setting up libgfortran5:i386 (8.2.0-13ubuntu1) ... Setting up libx11-data (2:1.6.7-1) ... Setting up libxau6:i386 (1:1.0.8-1) ... Setting up autopoint (0.19.8.1-9) ... Setting up libwebp6:i386 (0.6.1-2) ... Setting up zlib1g-dev:i386 (1:1.2.11.dfsg-0ubuntu2) ... Setting up libfile-stripnondeterminism-perl (1.0.0-1) ... Setting up libjpeg8:i386 (8c-2ubuntu8) ... Setting up libpaper1:i386 (1.1.26) ... Creating config file /etc/papersize with new version Setting up libk5crypto3:i386 (1.16.2-1) ... Setting up libpaper-utils (1.1.26) ... Setting up libpcre3-dev:i386 (2:8.39-11) ... Setting up fontconfig-config (2.13.0-5ubuntu3) ... Setting up libwind0-heimdal:i386 (7.5.0+dfsg-2.1) ... Setting up gettext (0.19.8.1-9) ... Setting up libblas-dev:i386 (3.8.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so to provide /usr/lib/i386-linux-gnu/libblas.so (libblas.so-i386-linux-gnu) in auto mode Setting up libasn1-8-heimdal:i386 (7.5.0+dfsg-2.1) ... Setting up groff-base (1.22.4-2) ... Setting up liblapack3:i386 (3.8.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up libhcrypto4-heimdal:i386 (7.5.0+dfsg-2.1) ... Setting up libharfbuzz0b:i386 (2.3.0-1) ... Setting up libtiff5:i386 (4.0.10-3) ... Setting up autoconf (2.69-11) ... Setting up libthai0:i386 (0.1.28-1) ... Setting up libicu-dev (63.1-5) ... Setting up file (1:5.34-2) ... Setting up libhx509-5-heimdal:i386 (7.5.0+dfsg-2.1) ... Setting up libncurses5-dev:i386 (6.1+20180210-4ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libjpeg8-dev:i386 (8c-2ubuntu8) ... Setting up libjpeg-dev:i386 (8c-2ubuntu8) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libreadline-dev:i386 (7.0-5) ... Setting up libice6:i386 (2:1.0.9-2) ... Setting up man-db (2.8.4-3) ... Not building database; man-db/auto-update is not 'true'. Setting up libkrb5-3:i386 (1.16.2-1) ... Setting up libkrb5-26-heimdal:i386 (7.5.0+dfsg-2.1) ... Setting up libpng-dev:i386 (1.6.36-2) ... Setting up libgfortran-8-dev:i386 (8.2.0-13ubuntu1) ... Setting up libxcb1:i386 (1.13.1-2) ... Setting up libheimntlm0-heimdal:i386 (7.5.0+dfsg-2.1) ... Setting up liblapack-dev:i386 (3.8.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so to provide /usr/lib/i386-linux-gnu/liblapack.so (liblapack.so-i386-linux-gnu) in auto mode Setting up libtool (2.4.6-6) ... Setting up libfontconfig1:i386 (2.13.0-5ubuntu3) ... Setting up libsm6:i386 (2:1.2.2-1) ... Setting up libxcb-render0:i386 (1.13.1-2) ... Setting up po-debconf (1.0.21) ... Setting up gfortran-8 (8.2.0-13ubuntu1) ... Setting up libx11-6:i386 (2:1.6.7-1) ... Setting up libxmuu1:i386 (2:1.1.2-2) ... Setting up libgssapi-krb5-2:i386 (1.16.2-1) ... Setting up libxcb-shm0:i386 (1.13.1-2) ... Setting up libxt6:i386 (1:1.1.5-1) ... Setting up libxrender1:i386 (1:0.9.10-1) ... Setting up libxft2:i386 (2.3.2-2) ... Setting up libgssapi3-heimdal:i386 (7.5.0+dfsg-2.1) ... Setting up fontconfig (2.13.0-5ubuntu3) ... Regenerating fonts cache... done. Setting up gfortran (4:8.2.0-2ubuntu2) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libxext6:i386 (2:1.3.3-1) ... Setting up libxss1:i386 (1:1.2.3-1) ... Setting up xauth (1:1.0.10-1) ... Setting up libldap-2.4-2:i386 (2.4.46+dfsg-5ubuntu3) ... Setting up libpango-1.0-0:i386 (1.42.4-6) ... Setting up libcairo2:i386 (1.16.0-2) ... Setting up libtk8.6:i386 (8.6.9-1) ... Setting up libcurl4:i386 (7.61.0-1ubuntu2.2) ... Setting up libpangoft2-1.0-0:i386 (1.42.4-6) ... Setting up libpangocairo-1.0-0:i386 (1.42.4-6) ... Setting up r-base-core (3.5.2-1) ... Creating config file /etc/R/Renviron with new version Setting up r-base-dev (3.5.2-1) ... Setting up r-bioc-biocgenerics (0.28.0-2) ... Setting up r-cran-formatr (1.5-3) ... Setting up r-cran-futile.options (1.0.1-2) ... Setting up r-cran-lambda.r (1.2.3-2) ... Setting up r-cran-matrixstats (0.54.0-1) ... Setting up r-cran-snow (1:0.4.3-1) ... Setting up r-bioc-s4vectors (0.20.1-2) ... Setting up r-cran-futile.logger (1.4.3-3) ... Setting up r-bioc-iranges (2.16.0-1) ... Setting up r-bioc-biocparallel (1.16.5-1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.0.0-1) ... Setting up debhelper (12ubuntu1) ... Setting up dh-r (20181206) ... Setting up sbuild-build-depends-r-bioc-delayedarray-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... Processing triggers for systemd (239-7ubuntu15) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-141-generic amd64 (i686) Toolchain package versions: binutils_2.31.1-11ubuntu1 dpkg-dev_1.19.2ubuntu2 g++-8_8.2.0-13ubuntu1 gcc-8_8.2.0-13ubuntu1 libc6-dev_2.28-0ubuntu1 libstdc++-8-dev_8.2.0-13ubuntu1 libstdc++6_8.2.0-13ubuntu1 linux-libc-dev_4.19.0-9.10 Package versions: adduser_3.117ubuntu1 advancecomp_2.1-1 apt_1.8.0~alpha3 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1ubuntu8 base-passwd_3.5.45 bash_4.4.18-2ubuntu3 binutils_2.31.1-11ubuntu1 binutils-common_2.31.1-11ubuntu1 binutils-i686-linux-gnu_2.31.1-11ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.32-0.1ubuntu2 build-essential_12.5ubuntu2 bzip2_1.0.6-9 ca-certificates_20180409 coreutils_8.28-1ubuntu2 cpp_4:8.2.0-2ubuntu2 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passwd_1:4.5-1ubuntu1 patch_2.7.6-3 perl_5.28.1-3 perl-base_5.28.1-3 perl-modules-5.28_5.28.1-3 pinentry-curses_1.1.0-1build2 pkg-config_0.29.1-0ubuntu2 pkgbinarymangler_143 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu1 r-base-core_3.5.2-1 r-base-dev_3.5.2-1 r-bioc-biocgenerics_0.28.0-2 r-bioc-biocparallel_1.16.5-1 r-bioc-iranges_2.16.0-1 r-bioc-s4vectors_0.20.1-2 r-cran-formatr_1.5-3 r-cran-futile.logger_1.4.3-3 r-cran-futile.options_1.0.1-2 r-cran-lambda.r_1.2.3-2 r-cran-matrixstats_0.54.0-1 r-cran-snow_1:0.4.3-1 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-delayedarray-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 systemd_239-7ubuntu15 systemd-sysv_239-7ubuntu15 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu2 tar_1.30+dfsg-4 tzdata_2018i-1 ubuntu-keyring_2018.09.18.1 ucf_3.0038+nmu1 unzip_6.0-21ubuntu1 util-linux_2.32-0.1ubuntu2 x11-common_1:7.7+19ubuntu8 xauth_1:1.0.10-1 xdg-utils_1.1.3-1ubuntu2 xz-utils_5.2.2-1.3 zip_3.0-11build1 zlib1g_1:1.2.11.dfsg-0ubuntu2 zlib1g-dev_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Sun Jan 6 11:47:17 2019 UTC gpgv: using RSA key 9A3C07BD06DE2F416E813A5D612EF1613E050F54 gpgv: issuer "daissi@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./r-bioc-delayedarray_0.8.0+dfsg-2.dsc dpkg-source: info: extracting r-bioc-delayedarray in r-bioc-delayedarray-0.8.0+dfsg dpkg-source: info: unpacking r-bioc-delayedarray_0.8.0+dfsg.orig.tar.xz dpkg-source: info: unpacking r-bioc-delayedarray_0.8.0+dfsg-2.debian.tar.xz Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-16240608 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-16240608 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-16240608 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package r-bioc-delayedarray dpkg-buildpackage: info: source version 0.8.0+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules build-arch dh build-arch --buildsystem R dh_update_autotools_config -a -O--buildsystem=R dh_autoreconf -a -O--buildsystem=R dh_auto_configure -a -O--buildsystem=R dh_auto_build -a -O--buildsystem=R dh_auto_test -a -O--buildsystem=R create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --buildsystem R dh_testroot -a -O--buildsystem=R dh_prep -a -O--buildsystem=R dh_auto_install -a -O--buildsystem=R I: R packages needed for DEP8: runit, biocgenerics, genefilter I: R Package: DelayedArray Version: 0.8.0 I: Building using R version 3.5.2-1 I: R API version: r-api-3.5 I: Using built-time from d/changelog: Sun, 06 Jan 2019 12:38:15 +0100 mkdir -p /<>/r-bioc-delayedarray-0.8.0\+dfsg/debian/r-bioc-delayedarray/usr/lib/R/site-library R CMD INSTALL -l /<>/r-bioc-delayedarray-0.8.0\+dfsg/debian/r-bioc-delayedarray/usr/lib/R/site-library --clean . "--built-timestamp='Sun, 06 Jan 2019 12:38:15 +0100'" * installing *source* package ‘DelayedArray’ ... ** libs make[1]: Entering directory '/<>/r-bioc-delayedarray-0.8.0+dfsg/src' gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-L4hATe/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c R_init_DelayedArray.c -o R_init_DelayedArray.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-L4hATe/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c S4Vectors_stubs.c -o S4Vectors_stubs.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-L4hATe/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c abind.c -o abind.o gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o DelayedArray.so R_init_DelayedArray.o S4Vectors_stubs.o abind.o -L/usr/lib/R/lib -lR make[1]: Leaving directory '/<>/r-bioc-delayedarray-0.8.0+dfsg/src' make[1]: Entering directory '/<>/r-bioc-delayedarray-0.8.0+dfsg/src' make[1]: Leaving directory '/<>/r-bioc-delayedarray-0.8.0+dfsg/src' installing to /<>/r-bioc-delayedarray-0.8.0+dfsg/debian/r-bioc-delayedarray/usr/lib/R/site-library/DelayedArray/libs ** R ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘aperm’ in package ‘DelayedArray’ in method for ‘coerce’ with signature ‘"dgCMatrix","SparseArraySeed"’: no definition for class “dgCMatrix” in method for ‘coerce’ with signature ‘"SparseArraySeed","dgCMatrix"’: no definition for class “dgCMatrix” in method for ‘coerce’ with signature ‘"SparseArraySeed","sparseMatrix"’: no definition for class “sparseMatrix” in method for ‘coerce’ with signature ‘"DelayedMatrix","dgCMatrix"’: no definition for class “dgCMatrix” in method for ‘coerce’ with signature ‘"DelayedMatrix","sparseMatrix"’: no definition for class “sparseMatrix” Creating a generic function for ‘sweep’ from package ‘base’ in package ‘DelayedArray’ Creating a new generic function for ‘apply’ in package ‘DelayedArray’ Creating a generic function for ‘dnorm’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘pnorm’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘qnorm’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘dbinom’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘pbinom’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘qbinom’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘dpois’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘ppois’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘qpois’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘dlogis’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘plogis’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘qlogis’ from package ‘stats’ in package ‘DelayedArray’ Creating a new generic function for ‘rowMaxs’ in package ‘DelayedArray’ Creating a new generic function for ‘colMaxs’ in package ‘DelayedArray’ Creating a new generic function for ‘rowMins’ in package ‘DelayedArray’ Creating a new generic function for ‘colMins’ in package ‘DelayedArray’ Creating a new generic function for ‘rowRanges’ in package ‘DelayedArray’ Creating a new generic function for ‘colRanges’ in package ‘DelayedArray’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (DelayedArray) W: Ignoring specified R dependency: R (>= 3.4) I: Using r-cran-matrixstats for Depends:matrixStats I: Using r-bioc-biocgenerics for Depends:BiocGenerics (>= 0.27.1) I: Using r-bioc-s4vectors for Depends:S4Vectors (>= 0.19.15) I: Using r-bioc-iranges for Depends:IRanges (>= 2.11.17) I: Using r-bioc-biocparallel for Depends:BiocParallel I: Using r-cran-runit for Recommends:runit I: Using r-bioc-biocgenerics for Recommends:biocgenerics I: Using r-bioc-genefilter for Recommends:genefilter I: Using r-cran-matrix for Suggests:Matrix W: Cannot find a debian package for Suggests:HDF5Array I: Using r-bioc-summarizedexperiment for Suggests:SummarizedExperiment W: Cannot find a debian package for Suggests:airway W: Cannot find a debian package for Suggests:pryr W: Cannot find a debian package for Suggests:DelayedMatrixStats I: Using r-cran-knitr for Suggests:knitr W: Cannot find a debian package for Suggests:BiocStyle I: BioConductor API version: r-api-bioc-3.8 Create lintian-override for package-contains-documentation-outside-usr-share-doc dh_installdocs -a -O--buildsystem=R dh_installchangelogs -a -O--buildsystem=R dh_installinit -a -O--buildsystem=R dh_lintian -a -O--buildsystem=R dh_perl -a -O--buildsystem=R dh_link -a -O--buildsystem=R dh_strip_nondeterminism -a -O--buildsystem=R dh_compress -a -O--buildsystem=R dh_fixperms -a -O--buildsystem=R dh_missing -a -O--buildsystem=R dh_strip -a -O--buildsystem=R dh_makeshlibs -a -O--buildsystem=R dh_shlibdeps -a -O--buildsystem=R dh_installdeb -a -O--buildsystem=R dh_gencontrol -a -O--buildsystem=R dh_md5sums -a -O--buildsystem=R dh_builddeb -a -O--buildsystem=R INFO: pkgstriptranslations version 143 INFO: pkgstriptranslations version 143 pkgstriptranslations: processing r-bioc-delayedarray-dbgsym (in debian/.debhelper/r-bioc-delayedarray/dbgsym-root); do_strip: , oemstrip: pkgstriptranslations: processing r-bioc-delayedarray (in debian/r-bioc-delayedarray); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/r-bioc-delayedarray/dbgsym-root/DEBIAN/control, package r-bioc-delayedarray-dbgsym, directory debian/.debhelper/r-bioc-delayedarray/dbgsym-root dpkg-deb: building package 'r-bioc-delayedarray-dbgsym' in 'debian/.debhelper/scratch-space/build-r-bioc-delayedarray/r-bioc-delayedarray-dbgsym_0.8.0+dfsg-2_i386.deb'. Renaming r-bioc-delayedarray-dbgsym_0.8.0+dfsg-2_i386.deb to r-bioc-delayedarray-dbgsym_0.8.0+dfsg-2_i386.ddeb pkgstripfiles: processing control file: debian/r-bioc-delayedarray/DEBIAN/control, package r-bioc-delayedarray, directory debian/r-bioc-delayedarray pkgstripfiles: Truncating usr/share/doc/r-bioc-delayedarray/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package r-bioc-delayedarray ... pkgstripfiles: No PNG files. dpkg-deb: building package 'r-bioc-delayedarray' in '../r-bioc-delayedarray_0.8.0+dfsg-2_i386.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../r-bioc-delayedarray_0.8.0+dfsg-2_i386.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20190106-1712 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ r-bioc-delayedarray_0.8.0+dfsg-2_i386.changes: ---------------------------------------------- Format: 1.8 Date: Sun, 06 Jan 2019 12:38:15 +0100 Source: r-bioc-delayedarray Binary: r-bioc-delayedarray Architecture: i386 Version: 0.8.0+dfsg-2 Distribution: disco-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Dylan Aïssi Description: r-bioc-delayedarray - BioConductor delayed operations on array-like objects Changes: r-bioc-delayedarray (0.8.0+dfsg-2) unstable; urgency=medium . * Team upload. * dh-update-R to update Build-Depends Remove useless Build-Depends: libgdal-dev * Add r-bioc-biocparallel (>= 1.16.5) to build-dep to avoid FTBFS on some uncommon architectures. 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In order to reduce memory usage and optimize performance, operations on the object are either delayed or executed using a block processing mechanism. 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+------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: i386 Build-Space: 4492 Build-Time: 43 Distribution: disco-proposed Host Architecture: i386 Install-Time: 62 Job: r-bioc-delayedarray_0.8.0+dfsg-2.dsc Machine Architecture: amd64 Package: r-bioc-delayedarray Package-Time: 106 Source-Version: 0.8.0+dfsg-2 Space: 4492 Status: successful Version: 0.8.0+dfsg-2 -------------------------------------------------------------------------------- Finished at 20190106-1712 Build needed 00:01:46, 4492k disc space RUN: 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