https://launchpad.net/ubuntu/+source/r-bioc-delayedarray/0.8.0+dfsg-2/+build/16240605 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux lgw01-amd64-027 4.4.0-141-generic #167-Ubuntu SMP Wed Dec 5 10:40:15 UTC 2018 x86_64 Buildd toolchain package versions: launchpad-buildd_165 python-lpbuildd_165 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.6 dpkg-dev_1.18.4ubuntu1.5 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 6 Jan 17:10:33 ntpdate[1811]: adjust time server 10.211.37.1 offset 0.001361 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=disco --arch=amd64 PACKAGEBUILD-16240605 /home/buildd/filecache-default/020b0022f770b890c357907d03d82568c584d50e Creating target for build PACKAGEBUILD-16240605 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=disco --arch=amd64 PACKAGEBUILD-16240605 Starting target for build PACKAGEBUILD-16240605 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=disco --arch=amd64 PACKAGEBUILD-16240605 'deb http://ftpmaster.internal/ubuntu disco main universe' 'deb http://ftpmaster.internal/ubuntu disco-security main universe' 'deb http://ftpmaster.internal/ubuntu disco-updates main universe' 'deb http://ftpmaster.internal/ubuntu disco-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-16240605 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=disco --arch=amd64 PACKAGEBUILD-16240605 Updating target for build PACKAGEBUILD-16240605 Get:1 http://ftpmaster.internal/ubuntu disco InRelease [243 kB] Get:2 http://ftpmaster.internal/ubuntu disco-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu disco-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu disco-proposed InRelease [93.2 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main amd64 Packages [1007 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main Translation-en [514 kB] Get:7 http://ftpmaster.internal/ubuntu disco/universe amd64 Packages [9033 kB] Get:8 http://ftpmaster.internal/ubuntu disco/universe Translation-en [5180 kB] Get:9 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 Packages [112 kB] Get:10 http://ftpmaster.internal/ubuntu disco-proposed/main Translation-en [48.1 kB] Get:11 http://ftpmaster.internal/ubuntu disco-proposed/universe amd64 Packages [445 kB] Get:12 http://ftpmaster.internal/ubuntu disco-proposed/universe Translation-en [229 kB] Fetched 17.0 MB in 5s (3348 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt binutils binutils-common binutils-x86-64-linux-gnu cpp-8 dash dpkg dpkg-dev e2fslibs e2fsprogs g++-8 gcc-8 gcc-8-base init init-system-helpers libapt-pkg5.0 libasan5 libassuan0 libatomic1 libbinutils libcc1-0 libcom-err2 libcomerr2 libdpkg-perl libext2fs2 libgcc-8-dev libgcc1 libgnutls30 libgomp1 libgpg-error0 libitm1 liblsan0 libmpx2 libpng16-16 libquadmath0 libsqlite3-0 libss2 libstdc++-8-dev libstdc++6 libtsan0 libubsan1 libzstd1 linux-libc-dev sed tar tzdata 46 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 39.5 MB of archives. After this operation, 160 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 tar amd64 1.30+dfsg-4 [242 kB] Get:2 http://ftpmaster.internal/ubuntu disco/main amd64 dpkg amd64 1.19.2ubuntu2 [1101 kB] Get:3 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 dash amd64 0.5.10.2-4 [85.8 kB] Get:4 http://ftpmaster.internal/ubuntu disco/main amd64 sed amd64 4.7-1 [190 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main amd64 init-system-helpers all 1.56+nmu1 [38.2 kB] Get:6 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libgnutls30 amd64 3.6.5-2ubuntu1 [759 kB] Get:7 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libubsan1 amd64 8.2.0-13ubuntu1 [121 kB] Get:8 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libtsan0 amd64 8.2.0-13ubuntu1 [288 kB] Get:9 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 gcc-8-base amd64 8.2.0-13ubuntu1 [18.6 kB] Get:10 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libgcc1 amd64 1:8.2.0-13ubuntu1 [40.8 kB] Get:11 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libgomp1 amd64 8.2.0-13ubuntu1 [76.5 kB] Get:12 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libitm1 amd64 8.2.0-13ubuntu1 [28.1 kB] Get:13 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libatomic1 amd64 8.2.0-13ubuntu1 [9056 B] Get:14 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libasan5 amd64 8.2.0-13ubuntu1 [364 kB] Get:15 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 liblsan0 amd64 8.2.0-13ubuntu1 [132 kB] Get:16 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libmpx2 amd64 8.2.0-13ubuntu1 [11.7 kB] Get:17 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libquadmath0 amd64 8.2.0-13ubuntu1 [134 kB] Get:18 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 cpp-8 amd64 8.2.0-13ubuntu1 [7221 kB] Get:19 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libcc1-0 amd64 8.2.0-13ubuntu1 [39.6 kB] Get:20 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 g++-8 amd64 8.2.0-13ubuntu1 [8113 kB] Get:21 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 gcc-8 amd64 8.2.0-13ubuntu1 [8004 kB] Get:22 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libgcc-8-dev amd64 8.2.0-13ubuntu1 [2304 kB] Get:23 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libstdc++-8-dev amd64 8.2.0-13ubuntu1 [1538 kB] Get:24 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libstdc++6 amd64 8.2.0-13ubuntu1 [398 kB] Get:25 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libbinutils amd64 2.31.1-11ubuntu1 [484 kB] Get:26 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 binutils-common amd64 2.31.1-11ubuntu1 [194 kB] Get:27 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 binutils amd64 2.31.1-11ubuntu1 [3396 B] Get:28 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 binutils-x86-64-linux-gnu amd64 2.31.1-11ubuntu1 [1829 kB] Get:29 http://ftpmaster.internal/ubuntu disco/main amd64 libzstd1 amd64 1.3.8+dfsg-3 [226 kB] Get:30 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libapt-pkg5.0 amd64 1.8.0~alpha3 [816 kB] Get:31 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 apt amd64 1.8.0~alpha3 [1165 kB] Get:32 http://ftpmaster.internal/ubuntu disco/main amd64 libext2fs2 amd64 1.44.5-1 [159 kB] Get:33 http://ftpmaster.internal/ubuntu disco/main amd64 e2fsprogs amd64 1.44.5-1 [514 kB] Get:34 http://ftpmaster.internal/ubuntu disco/main amd64 init amd64 1.56+nmu1 [6080 B] Get:35 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libgpg-error0 amd64 1.33-3 [57.4 kB] Get:36 http://ftpmaster.internal/ubuntu disco/main amd64 libcom-err2 amd64 1.44.5-1 [9372 B] Get:37 http://ftpmaster.internal/ubuntu disco/main amd64 libss2 amd64 1.44.5-1 [11.1 kB] Get:38 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libsqlite3-0 amd64 3.26.0+fossilbc891ac6b-1 [530 kB] Get:39 http://ftpmaster.internal/ubuntu disco/main amd64 tzdata all 2018i-1 [189 kB] Get:40 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libpng16-16 amd64 1.6.36-2 [179 kB] Get:41 http://ftpmaster.internal/ubuntu disco/main amd64 dpkg-dev all 1.19.2ubuntu2 [549 kB] Get:42 http://ftpmaster.internal/ubuntu disco/main amd64 libdpkg-perl all 1.19.2ubuntu2 [227 kB] Get:43 http://ftpmaster.internal/ubuntu disco/main amd64 e2fslibs amd64 1.44.5-1 [2704 B] Get:44 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libassuan0 amd64 2.5.2-1 [35.1 kB] Get:45 http://ftpmaster.internal/ubuntu disco/main amd64 libcomerr2 amd64 1.44.5-1 [2700 B] Get:46 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 linux-libc-dev amd64 4.19.0-9.10 [1041 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 39.5 MB in 2s (23.3 MB/s) (Reading database ... 12665 files and directories currently installed.) Preparing to unpack .../tar_1.30+dfsg-4_amd64.deb ... Unpacking tar (1.30+dfsg-4) over (1.30+dfsg-3) ... Setting up tar (1.30+dfsg-4) ... (Reading database ... 12665 files and directories currently installed.) Preparing to unpack .../dpkg_1.19.2ubuntu2_amd64.deb ... Unpacking dpkg (1.19.2ubuntu2) over (1.19.2ubuntu1) ... Setting up dpkg (1.19.2ubuntu2) ... (Reading database ... 12665 files and directories currently installed.) Preparing to unpack .../dash_0.5.10.2-4_amd64.deb ... Unpacking dash (0.5.10.2-4) over (0.5.10.2-2) ... Setting up dash (0.5.10.2-4) ... (Reading database ... 12665 files and directories currently installed.) Preparing to unpack .../archives/sed_4.7-1_amd64.deb ... Unpacking sed (4.7-1) over (4.5-2) ... Setting up sed (4.7-1) ... (Reading database ... 12665 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.56+nmu1_all.deb ... Unpacking init-system-helpers (1.56+nmu1) over (1.56) ... Setting up init-system-helpers (1.56+nmu1) ... (Reading database ... 12665 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.6.5-2ubuntu1_amd64.deb ... Unpacking libgnutls30:amd64 (3.6.5-2ubuntu1) over (3.6.4-2ubuntu2) ... Setting up libgnutls30:amd64 (3.6.5-2ubuntu1) ... (Reading database ... 12665 files and directories currently installed.) Preparing to unpack .../libubsan1_8.2.0-13ubuntu1_amd64.deb ... Unpacking libubsan1:amd64 (8.2.0-13ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../libtsan0_8.2.0-13ubuntu1_amd64.deb ... Unpacking libtsan0:amd64 (8.2.0-13ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../gcc-8-base_8.2.0-13ubuntu1_amd64.deb ... Unpacking gcc-8-base:amd64 (8.2.0-13ubuntu1) over (8.2.0-12ubuntu1) ... Setting up gcc-8-base:amd64 (8.2.0-13ubuntu1) ... (Reading database ... 12665 files and directories currently installed.) Preparing to unpack .../libgcc1_1%3a8.2.0-13ubuntu1_amd64.deb ... Unpacking libgcc1:amd64 (1:8.2.0-13ubuntu1) over (1:8.2.0-12ubuntu1) ... Setting up libgcc1:amd64 (1:8.2.0-13ubuntu1) ... (Reading database ... 12665 files and directories currently installed.) Preparing to unpack .../00-libgomp1_8.2.0-13ubuntu1_amd64.deb ... Unpacking libgomp1:amd64 (8.2.0-13ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../01-libitm1_8.2.0-13ubuntu1_amd64.deb ... Unpacking libitm1:amd64 (8.2.0-13ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../02-libatomic1_8.2.0-13ubuntu1_amd64.deb ... Unpacking libatomic1:amd64 (8.2.0-13ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../03-libasan5_8.2.0-13ubuntu1_amd64.deb ... Unpacking libasan5:amd64 (8.2.0-13ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../04-liblsan0_8.2.0-13ubuntu1_amd64.deb ... Unpacking liblsan0:amd64 (8.2.0-13ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../05-libmpx2_8.2.0-13ubuntu1_amd64.deb ... Unpacking libmpx2:amd64 (8.2.0-13ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../06-libquadmath0_8.2.0-13ubuntu1_amd64.deb ... Unpacking libquadmath0:amd64 (8.2.0-13ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../07-cpp-8_8.2.0-13ubuntu1_amd64.deb ... Unpacking cpp-8 (8.2.0-13ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../08-libcc1-0_8.2.0-13ubuntu1_amd64.deb ... Unpacking libcc1-0:amd64 (8.2.0-13ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../09-g++-8_8.2.0-13ubuntu1_amd64.deb ... Unpacking g++-8 (8.2.0-13ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../10-gcc-8_8.2.0-13ubuntu1_amd64.deb ... Unpacking gcc-8 (8.2.0-13ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../11-libgcc-8-dev_8.2.0-13ubuntu1_amd64.deb ... Unpacking libgcc-8-dev:amd64 (8.2.0-13ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../12-libstdc++-8-dev_8.2.0-13ubuntu1_amd64.deb ... Unpacking libstdc++-8-dev:amd64 (8.2.0-13ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../13-libstdc++6_8.2.0-13ubuntu1_amd64.deb ... Unpacking libstdc++6:amd64 (8.2.0-13ubuntu1) over (8.2.0-12ubuntu1) ... Setting up libstdc++6:amd64 (8.2.0-13ubuntu1) ... (Reading database ... 12665 files and directories currently installed.) Preparing to unpack .../libbinutils_2.31.1-11ubuntu1_amd64.deb ... Unpacking libbinutils:amd64 (2.31.1-11ubuntu1) over (2.31.1-10ubuntu1) ... Preparing to unpack .../binutils-common_2.31.1-11ubuntu1_amd64.deb ... Unpacking binutils-common:amd64 (2.31.1-11ubuntu1) over (2.31.1-10ubuntu1) ... Preparing to unpack .../binutils_2.31.1-11ubuntu1_amd64.deb ... Unpacking binutils (2.31.1-11ubuntu1) over (2.31.1-10ubuntu1) ... Preparing to unpack .../binutils-x86-64-linux-gnu_2.31.1-11ubuntu1_amd64.deb ... Unpacking binutils-x86-64-linux-gnu (2.31.1-11ubuntu1) over (2.31.1-10ubuntu1) ... Preparing to unpack .../libzstd1_1.3.8+dfsg-3_amd64.deb ... Unpacking libzstd1:amd64 (1.3.8+dfsg-3) over (1.3.5+dfsg-1ubuntu1) ... Setting up libzstd1:amd64 (1.3.8+dfsg-3) ... (Reading database ... 12665 files and directories currently installed.) Preparing to unpack .../libapt-pkg5.0_1.8.0~alpha3_amd64.deb ... Unpacking libapt-pkg5.0:amd64 (1.8.0~alpha3) over (1.8.0~alpha2ubuntu1) ... Setting up libapt-pkg5.0:amd64 (1.8.0~alpha3) ... (Reading database ... 12665 files and directories currently installed.) Preparing to unpack .../apt_1.8.0~alpha3_amd64.deb ... Unpacking apt (1.8.0~alpha3) over (1.8.0~alpha2ubuntu1) ... Setting up apt (1.8.0~alpha3) ... (Reading database ... 12664 files and directories currently installed.) Preparing to unpack .../libext2fs2_1.44.5-1_amd64.deb ... Unpacking libext2fs2:amd64 (1.44.5-1) over (1.44.4-2ubuntu1) ... Setting up libext2fs2:amd64 (1.44.5-1) ... (Reading database ... 12663 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.44.5-1_amd64.deb ... Unpacking e2fsprogs (1.44.5-1) over (1.44.4-2ubuntu1) ... Preparing to unpack .../init_1.56+nmu1_amd64.deb ... Unpacking init (1.56+nmu1) over (1.56) ... Preparing to unpack .../libgpg-error0_1.33-3_amd64.deb ... Unpacking libgpg-error0:amd64 (1.33-3) over (1.32-3) ... Setting up libgpg-error0:amd64 (1.33-3) ... (Reading database ... 12663 files and directories currently installed.) Preparing to unpack .../00-libcom-err2_1.44.5-1_amd64.deb ... Unpacking libcom-err2:amd64 (1.44.5-1) over (1.44.4-2ubuntu1) ... Preparing to unpack .../01-libss2_1.44.5-1_amd64.deb ... Unpacking libss2:amd64 (1.44.5-1) over (1.44.4-2ubuntu1) ... Preparing to unpack .../02-libsqlite3-0_3.26.0+fossilbc891ac6b-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.26.0+fossilbc891ac6b-1) over (3.26.0-2) ... Preparing to unpack .../03-tzdata_2018i-1_all.deb ... Unpacking tzdata (2018i-1) over (2018g-1) ... Preparing to unpack .../04-libpng16-16_1.6.36-2_amd64.deb ... Unpacking libpng16-16:amd64 (1.6.36-2) over (1.6.34-2) ... Preparing to unpack .../05-dpkg-dev_1.19.2ubuntu2_all.deb ... Unpacking dpkg-dev (1.19.2ubuntu2) over (1.19.2ubuntu1) ... Preparing to unpack .../06-libdpkg-perl_1.19.2ubuntu2_all.deb ... Unpacking libdpkg-perl (1.19.2ubuntu2) over (1.19.2ubuntu1) ... Preparing to unpack .../07-e2fslibs_1.44.5-1_amd64.deb ... Unpacking e2fslibs:amd64 (1.44.5-1) over (1.44.4-2ubuntu1) ... Preparing to unpack .../08-libassuan0_2.5.2-1_amd64.deb ... Unpacking libassuan0:amd64 (2.5.2-1) over (2.5.1-2) ... Preparing to unpack .../09-libcomerr2_1.44.5-1_amd64.deb ... Unpacking libcomerr2:amd64 (1.44.5-1) over (1.44.4-2ubuntu1) ... Preparing to unpack .../10-linux-libc-dev_4.19.0-9.10_amd64.deb ... Unpacking linux-libc-dev:amd64 (4.19.0-9.10) over (4.18.0-11.12) ... Setting up libquadmath0:amd64 (8.2.0-13ubuntu1) ... Setting up cpp-8 (8.2.0-13ubuntu1) ... Setting up libcom-err2:amd64 (1.44.5-1) ... Setting up libgomp1:amd64 (8.2.0-13ubuntu1) ... Setting up libatomic1:amd64 (8.2.0-13ubuntu1) ... Setting up libss2:amd64 (1.44.5-1) ... Setting up libcc1-0:amd64 (8.2.0-13ubuntu1) ... Setting up e2fslibs:amd64 (1.44.5-1) ... Setting up libpng16-16:amd64 (1.6.36-2) ... Setting up tzdata (2018i-1) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Jan 6 17:11:10 UTC 2019. Universal Time is now: Sun Jan 6 17:11:10 UTC 2019. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up init (1.56+nmu1) ... Setting up libtsan0:amd64 (8.2.0-13ubuntu1) ... Setting up linux-libc-dev:amd64 (4.19.0-9.10) ... Setting up libdpkg-perl (1.19.2ubuntu2) ... Setting up e2fsprogs (1.44.5-1) ... Setting up liblsan0:amd64 (8.2.0-13ubuntu1) ... Setting up binutils-common:amd64 (2.31.1-11ubuntu1) ... Setting up libmpx2:amd64 (8.2.0-13ubuntu1) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... Setting up libsqlite3-0:amd64 (3.26.0+fossilbc891ac6b-1) ... Setting up libcomerr2:amd64 (1.44.5-1) ... Setting up libasan5:amd64 (8.2.0-13ubuntu1) ... Setting up libassuan0:amd64 (2.5.2-1) ... Setting up libitm1:amd64 (8.2.0-13ubuntu1) ... Setting up libubsan1:amd64 (8.2.0-13ubuntu1) ... Setting up libbinutils:amd64 (2.31.1-11ubuntu1) ... Setting up libgcc-8-dev:amd64 (8.2.0-13ubuntu1) ... Setting up binutils-x86-64-linux-gnu (2.31.1-11ubuntu1) ... Setting up libstdc++-8-dev:amd64 (8.2.0-13ubuntu1) ... Setting up binutils (2.31.1-11ubuntu1) ... Setting up gcc-8 (8.2.0-13ubuntu1) ... Setting up g++-8 (8.2.0-13ubuntu1) ... Setting up dpkg-dev (1.19.2ubuntu2) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-16240605 amd64 disco-proposed -c chroot:build-PACKAGEBUILD-16240605 --arch=amd64 --dist=disco-proposed --nolog -A r-bioc-delayedarray_0.8.0+dfsg-2.dsc Initiating build PACKAGEBUILD-16240605 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-141-generic #167-Ubuntu SMP Wed Dec 5 10:40:15 UTC 2018 x86_64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lgw01-amd64-027.buildd +==============================================================================+ | r-bioc-delayedarray 0.8.0+dfsg-2 (amd64) 06 Jan 2019 17:11 | +==============================================================================+ Package: r-bioc-delayedarray Version: 0.8.0+dfsg-2 Source Version: 0.8.0+dfsg-2 Distribution: disco-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/r-bioc-delayedarray-LJbKs4/r-bioc-delayedarray-0.8.0+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/r-bioc-delayedarray-LJbKs4' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-16240605/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- r-bioc-delayedarray_0.8.0+dfsg-2.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-pdJIxT/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-pdJIxT/apt_archive ./ InRelease Get:2 copy:/<>/resolver-pdJIxT/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-pdJIxT/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-pdJIxT/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-pdJIxT/apt_archive ./ Packages [527 B] Fetched 2860 B in 0s (41.4 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-pdJIxT/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12669 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11~), dh-r, r-base-dev, r-cran-matrixstats, r-bioc-biocgenerics (>= 0.27.1), r-bioc-s4vectors (>= 0.19.15), r-bioc-iranges (>= 2.11.17), r-bioc-biocparallel (>= 1.16.5) Filtered Build-Depends: debhelper (>= 11~), dh-r, r-base-dev, r-cran-matrixstats, r-bioc-biocgenerics (>= 0.27.1), r-bioc-s4vectors (>= 0.19.15), r-bioc-iranges (>= 2.11.17), r-bioc-biocparallel (>= 1.16.5) dpkg-deb: building package 'sbuild-build-depends-r-bioc-delayedarray-dummy' in '/<>/resolver-30f7Io/apt_archive/sbuild-build-depends-r-bioc-delayedarray-dummy.deb'. Ign:1 copy:/<>/resolver-30f7Io/apt_archive ./ InRelease Get:2 copy:/<>/resolver-30f7Io/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-30f7Io/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-30f7Io/apt_archive ./ Sources [302 B] Get:5 copy:/<>/resolver-30f7Io/apt_archive ./ Packages [622 B] Fetched 3043 B in 0s (107 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install r-bioc-delayedarray build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-8 groff-base icu-devtools intltool-debian libarchive-zip-perl libasn1-8-heimdal libblas-dev libblas3 libbsd0 libbz2-dev libcairo2 libcroco3 libcurl4 libdatrie1 libelf1 libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-8-dev libgfortran5 libglib2.0-0 libgraphite2-3 libgssapi-krb5-2 libgssapi3-heimdal libharfbuzz0b libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libice6 libicu-dev libicu63 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 libldap-common liblzma-dev libmagic-mgc libmagic1 libncurses-dev libncurses5-dev libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libreadline-dev libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libtool libuchardet0 libwebp6 libwind0-heimdal libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db pkg-config po-debconf r-base-core r-base-dev r-bioc-biocgenerics r-bioc-biocparallel r-bioc-iranges r-bioc-s4vectors r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-lambda.r r-cran-matrixstats r-cran-snow ucf unzip x11-common xauth xdg-utils zip zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation debtags dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-multilib gfortran-doc gfortran-8-multilib gfortran-8-doc libgfortran5-dbg libcoarrays-dev groff liblapack-doc krb5-doc krb5-user icu-doc liblzma-doc ncurses-doc readline-doc tcl8.6 tk8.6 libtool-doc gcj-jdk m4-doc apparmor less www-browser libmail-box-perl ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo r-bioc-biobase r-bioc-genomicranges r-bioc-rsamtools r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-foreach r-cran-batchjobs r-cran-bbmisc r-cran-doparallel r-cran-rmpi r-bioc-variantannotation r-bioc-genomicalignments r-bioc-shortread r-cran-codetools r-cran-runit r-cran-knitr r-cran-batchtools r-cran-data.table r-bioc-genomicfeatures r-bioc-summarizedexperiment r-cran-matrix r-bioc-delayedarray r-bioc-graph r-cran-shiny r-cran-rmarkdown r-cran-jsonlite r-cran-base64enc r-cran-ggplot2 r-cran-rsprng r-cran-rlecuyer Recommended packages: devscripts curl | wget | lynx bzip2-doc libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales libpng-tools publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl r-recommended r-doc-html r-cran-runit r-bioc-xvector r-bioc-genomicranges r-cran-testit r-cran-codetools r-cran-survival r-cran-testthat libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-8 groff-base icu-devtools intltool-debian libarchive-zip-perl libasn1-8-heimdal libblas-dev libblas3 libbsd0 libbz2-dev libcairo2 libcroco3 libcurl4 libdatrie1 libelf1 libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-8-dev libgfortran5 libglib2.0-0 libgraphite2-3 libgssapi-krb5-2 libgssapi3-heimdal libharfbuzz0b libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libice6 libicu-dev libicu63 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 libldap-common liblzma-dev libmagic-mgc libmagic1 libncurses-dev libncurses5-dev libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libreadline-dev libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libtool libuchardet0 libwebp6 libwind0-heimdal libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db pkg-config po-debconf r-base-core r-base-dev r-bioc-biocgenerics r-bioc-biocparallel r-bioc-iranges r-bioc-s4vectors r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-lambda.r r-cran-matrixstats r-cran-snow sbuild-build-depends-r-bioc-delayedarray-dummy ucf unzip x11-common xauth xdg-utils zip zlib1g-dev 0 upgraded, 142 newly installed, 0 to remove and 0 not upgraded. Need to get 81.4 MB of archives. After this operation, 255 MB of additional disk space will be used. Get:1 copy:/<>/resolver-30f7Io/apt_archive ./ sbuild-build-depends-r-bioc-delayedarray-dummy 0.invalid.0 [948 B] Get:2 http://ftpmaster.internal/ubuntu disco/main amd64 libxau6 amd64 1:1.0.8-1 [8376 B] Get:3 http://ftpmaster.internal/ubuntu disco/main amd64 libbsd0 amd64 0.9.1-1 [44.6 kB] Get:4 http://ftpmaster.internal/ubuntu disco/main amd64 libxdmcp6 amd64 1:1.1.2-3 [10.7 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main amd64 libxcb1 amd64 1.13.1-2 [45.2 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main amd64 libx11-data all 2:1.6.7-1 [113 kB] Get:7 http://ftpmaster.internal/ubuntu disco/main amd64 libx11-6 amd64 2:1.6.7-1 [572 kB] Get:8 http://ftpmaster.internal/ubuntu disco/main amd64 libxext6 amd64 2:1.3.3-1 [29.4 kB] Get:9 http://ftpmaster.internal/ubuntu disco/main amd64 bsdmainutils amd64 11.1.2ubuntu2 [181 kB] Get:10 http://ftpmaster.internal/ubuntu disco/universe amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:11 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 groff-base amd64 1.22.4-2 [862 kB] Get:12 http://ftpmaster.internal/ubuntu disco/main amd64 libpipeline1 amd64 1.5.0-2 [25.7 kB] Get:13 http://ftpmaster.internal/ubuntu disco/main amd64 man-db amd64 2.8.4-3 [1028 kB] Get:14 http://ftpmaster.internal/ubuntu disco/main amd64 x11-common all 1:7.7+19ubuntu8 [22.5 kB] Get:15 http://ftpmaster.internal/ubuntu disco/main amd64 libice6 amd64 2:1.0.9-2 [40.2 kB] Get:16 http://ftpmaster.internal/ubuntu disco/main amd64 libsm6 amd64 2:1.2.2-1 [15.8 kB] Get:17 http://ftpmaster.internal/ubuntu disco/main amd64 libmagic-mgc amd64 1:5.34-2 [197 kB] Get:18 http://ftpmaster.internal/ubuntu disco/main amd64 libmagic1 amd64 1:5.34-2 [72.3 kB] Get:19 http://ftpmaster.internal/ubuntu disco/main amd64 file amd64 1:5.34-2 [22.8 kB] Get:20 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libelf1 amd64 0.175-2 [44.2 kB] Get:21 http://ftpmaster.internal/ubuntu disco/main amd64 libexpat1 amd64 2.2.6-1 [87.2 kB] Get:22 http://ftpmaster.internal/ubuntu disco/main amd64 libfribidi0 amd64 1.0.5-3 [26.1 kB] Get:23 http://ftpmaster.internal/ubuntu disco/main amd64 libglib2.0-0 amd64 2.58.1-2 [1176 kB] Get:24 http://ftpmaster.internal/ubuntu disco/main amd64 libicu63 amd64 63.1-5 [8284 kB] Get:25 http://ftpmaster.internal/ubuntu disco/main amd64 libxml2 amd64 2.9.4+dfsg1-7ubuntu3 [625 kB] Get:26 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 ucf all 3.0038+nmu1 [51.6 kB] Get:27 http://ftpmaster.internal/ubuntu disco/main amd64 gettext-base amd64 0.19.8.1-9 [50.1 kB] Get:28 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libkrb5support0 amd64 1.16.2-1 [31.2 kB] Get:29 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libk5crypto3 amd64 1.16.2-1 [85.5 kB] Get:30 http://ftpmaster.internal/ubuntu disco/main amd64 libkeyutils1 amd64 1.5.9-9.3 [9640 B] Get:31 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libkrb5-3 amd64 1.16.2-1 [282 kB] Get:32 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libgssapi-krb5-2 amd64 1.16.2-1 [122 kB] Get:33 http://ftpmaster.internal/ubuntu disco/main amd64 libpsl5 amd64 0.20.2-2 [50.0 kB] Get:34 http://ftpmaster.internal/ubuntu disco/main amd64 libxmuu1 amd64 2:1.1.2-2 [9674 B] Get:35 http://ftpmaster.internal/ubuntu disco/main amd64 xauth amd64 1:1.0.10-1 [24.6 kB] Get:36 http://ftpmaster.internal/ubuntu disco/main amd64 libsigsegv2 amd64 2.12-2 [13.9 kB] Get:37 http://ftpmaster.internal/ubuntu disco/main amd64 m4 amd64 1.4.18-2 [199 kB] Get:38 http://ftpmaster.internal/ubuntu disco/main amd64 autoconf all 2.69-11 [322 kB] Get:39 http://ftpmaster.internal/ubuntu disco/main amd64 autotools-dev all 20180224.1 [39.6 kB] Get:40 http://ftpmaster.internal/ubuntu disco/main amd64 automake all 1:1.16.1-4 [522 kB] Get:41 http://ftpmaster.internal/ubuntu disco/main amd64 autopoint all 0.19.8.1-9 [412 kB] Get:42 http://ftpmaster.internal/ubuntu disco/main amd64 dctrl-tools amd64 2.24-3 [61.5 kB] Get:43 http://ftpmaster.internal/ubuntu disco/main amd64 libtool all 2.4.6-6 [195 kB] Get:44 http://ftpmaster.internal/ubuntu disco/main amd64 dh-autoreconf all 19 [16.1 kB] Get:45 http://ftpmaster.internal/ubuntu disco/main amd64 libarchive-zip-perl all 1.64-1 [84.9 kB] Get:46 http://ftpmaster.internal/ubuntu disco/main amd64 libfile-stripnondeterminism-perl all 1.0.0-1 [13.9 kB] Get:47 http://ftpmaster.internal/ubuntu disco/main amd64 dh-strip-nondeterminism all 1.0.0-1 [5064 B] Get:48 http://ftpmaster.internal/ubuntu disco/main amd64 dwz amd64 0.12-3 [78.1 kB] Get:49 http://ftpmaster.internal/ubuntu disco/main amd64 libcroco3 amd64 0.6.12-3 [81.4 kB] Get:50 http://ftpmaster.internal/ubuntu disco/main amd64 gettext amd64 0.19.8.1-9 [896 kB] Get:51 http://ftpmaster.internal/ubuntu disco/main amd64 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:52 http://ftpmaster.internal/ubuntu disco/main amd64 po-debconf all 1.0.21 [233 kB] Get:53 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 debhelper all 12ubuntu1 [887 kB] Get:54 http://ftpmaster.internal/ubuntu disco/main amd64 zip amd64 3.0-11build1 [167 kB] Get:55 http://ftpmaster.internal/ubuntu disco/main amd64 unzip amd64 6.0-21ubuntu1 [167 kB] Get:56 http://ftpmaster.internal/ubuntu disco/main amd64 libpaper1 amd64 1.1.26 [12.9 kB] Get:57 http://ftpmaster.internal/ubuntu disco/main amd64 libpaper-utils amd64 1.1.26 [8320 B] Get:58 http://ftpmaster.internal/ubuntu disco/main amd64 xdg-utils all 1.1.3-1ubuntu2 [60.5 kB] Get:59 http://ftpmaster.internal/ubuntu disco/main amd64 libblas3 amd64 3.8.0-2 [138 kB] Get:60 http://ftpmaster.internal/ubuntu disco/main amd64 libfreetype6 amd64 2.8.1-2ubuntu2 [335 kB] Get:61 http://ftpmaster.internal/ubuntu disco/main amd64 fonts-dejavu-core all 2.37-1 [1041 kB] Get:62 http://ftpmaster.internal/ubuntu disco/main amd64 fontconfig-config all 2.13.0-5ubuntu3 [28.4 kB] Get:63 http://ftpmaster.internal/ubuntu disco/main amd64 libfontconfig1 amd64 2.13.0-5ubuntu3 [112 kB] Get:64 http://ftpmaster.internal/ubuntu disco/main amd64 libpixman-1-0 amd64 0.36.0-1 [229 kB] Get:65 http://ftpmaster.internal/ubuntu disco/main amd64 libxcb-render0 amd64 1.13.1-2 [14.8 kB] Get:66 http://ftpmaster.internal/ubuntu disco/main amd64 libxcb-shm0 amd64 1.13.1-2 [5548 B] Get:67 http://ftpmaster.internal/ubuntu disco/main amd64 libxrender1 amd64 1:0.9.10-1 [18.7 kB] Get:68 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libcairo2 amd64 1.16.0-2 [585 kB] Get:69 http://ftpmaster.internal/ubuntu disco/main amd64 libroken18-heimdal amd64 7.5.0+dfsg-2.1 [41.4 kB] Get:70 http://ftpmaster.internal/ubuntu disco/main amd64 libasn1-8-heimdal amd64 7.5.0+dfsg-2.1 [182 kB] Get:71 http://ftpmaster.internal/ubuntu disco/main amd64 libheimbase1-heimdal amd64 7.5.0+dfsg-2.1 [29.4 kB] Get:72 http://ftpmaster.internal/ubuntu disco/main amd64 libhcrypto4-heimdal amd64 7.5.0+dfsg-2.1 [86.7 kB] Get:73 http://ftpmaster.internal/ubuntu disco/main amd64 libwind0-heimdal amd64 7.5.0+dfsg-2.1 [47.8 kB] Get:74 http://ftpmaster.internal/ubuntu disco/main amd64 libhx509-5-heimdal amd64 7.5.0+dfsg-2.1 [107 kB] Get:75 http://ftpmaster.internal/ubuntu disco/main amd64 libkrb5-26-heimdal amd64 7.5.0+dfsg-2.1 [206 kB] Get:76 http://ftpmaster.internal/ubuntu disco/main amd64 libheimntlm0-heimdal amd64 7.5.0+dfsg-2.1 [14.8 kB] Get:77 http://ftpmaster.internal/ubuntu disco/main amd64 libgssapi3-heimdal amd64 7.5.0+dfsg-2.1 [96.4 kB] Get:78 http://ftpmaster.internal/ubuntu disco/main amd64 libsasl2-modules-db amd64 2.1.27~101-g0780600+dfsg-3ubuntu2 [14.8 kB] Get:79 http://ftpmaster.internal/ubuntu disco/main amd64 libsasl2-2 amd64 2.1.27~101-g0780600+dfsg-3ubuntu2 [49.2 kB] Get:80 http://ftpmaster.internal/ubuntu disco/main amd64 libldap-common all 2.4.46+dfsg-5ubuntu3 [16.0 kB] Get:81 http://ftpmaster.internal/ubuntu disco/main amd64 libldap-2.4-2 amd64 2.4.46+dfsg-5ubuntu3 [154 kB] Get:82 http://ftpmaster.internal/ubuntu disco/main amd64 libnghttp2-14 amd64 1.35.1-1 [78.9 kB] Get:83 http://ftpmaster.internal/ubuntu disco/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2 [54.5 kB] Get:84 http://ftpmaster.internal/ubuntu disco/main amd64 libcurl4 amd64 7.61.0-1ubuntu2.2 [217 kB] Get:85 http://ftpmaster.internal/ubuntu disco/main amd64 libjpeg-turbo8 amd64 2.0.0-0ubuntu2 [117 kB] Get:86 http://ftpmaster.internal/ubuntu disco/main amd64 libjpeg8 amd64 8c-2ubuntu8 [2194 B] Get:87 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libgfortran5 amd64 8.2.0-13ubuntu1 [587 kB] Get:88 http://ftpmaster.internal/ubuntu disco/main amd64 liblapack3 amd64 3.8.0-2 [2099 kB] Get:89 http://ftpmaster.internal/ubuntu disco/main amd64 fontconfig amd64 2.13.0-5ubuntu3 [170 kB] Get:90 http://ftpmaster.internal/ubuntu disco/main amd64 libthai-data all 0.1.28-1 [134 kB] Get:91 http://ftpmaster.internal/ubuntu disco/main amd64 libdatrie1 amd64 0.2.12-1 [18.3 kB] Get:92 http://ftpmaster.internal/ubuntu disco/main amd64 libthai0 amd64 0.1.28-1 [18.0 kB] Get:93 http://ftpmaster.internal/ubuntu disco/main amd64 libpango-1.0-0 amd64 1.42.4-6 [155 kB] Get:94 http://ftpmaster.internal/ubuntu disco/main amd64 libgraphite2-3 amd64 1.3.12-1 [73.6 kB] Get:95 http://ftpmaster.internal/ubuntu disco/main amd64 libharfbuzz0b amd64 2.3.0-1 [365 kB] Get:96 http://ftpmaster.internal/ubuntu disco/main amd64 libpangoft2-1.0-0 amd64 1.42.4-6 [35.6 kB] Get:97 http://ftpmaster.internal/ubuntu disco/main amd64 libpangocairo-1.0-0 amd64 1.42.4-6 [23.2 kB] Get:98 http://ftpmaster.internal/ubuntu disco/main amd64 libtcl8.6 amd64 8.6.9+dfsg-1 [898 kB] Get:99 http://ftpmaster.internal/ubuntu disco/main amd64 libjbig0 amd64 2.1-3.1build1 [26.7 kB] Get:100 http://ftpmaster.internal/ubuntu disco/main amd64 libwebp6 amd64 0.6.1-2 [185 kB] Get:101 http://ftpmaster.internal/ubuntu disco/main amd64 libtiff5 amd64 4.0.10-3 [157 kB] Get:102 http://ftpmaster.internal/ubuntu disco/main amd64 libxft2 amd64 2.3.2-2 [38.5 kB] Get:103 http://ftpmaster.internal/ubuntu disco/main amd64 libxss1 amd64 1:1.2.3-1 [8140 B] Get:104 http://ftpmaster.internal/ubuntu disco/main amd64 libtk8.6 amd64 8.6.9-1 [709 kB] Get:105 http://ftpmaster.internal/ubuntu disco/main amd64 libxt6 amd64 1:1.1.5-1 [160 kB] Get:106 http://ftpmaster.internal/ubuntu disco/universe amd64 r-base-core amd64 3.5.2-1 [23.8 MB] Get:107 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libgfortran-8-dev amd64 8.2.0-13ubuntu1 [621 kB] Get:108 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 gfortran-8 amd64 8.2.0-13ubuntu1 [7645 kB] Get:109 http://ftpmaster.internal/ubuntu disco/main amd64 gfortran amd64 4:8.2.0-2ubuntu2 [1368 B] Get:110 http://ftpmaster.internal/ubuntu disco/main amd64 libblas-dev amd64 3.8.0-2 [141 kB] Get:111 http://ftpmaster.internal/ubuntu disco/main amd64 liblapack-dev amd64 3.8.0-2 [2127 kB] Get:112 http://ftpmaster.internal/ubuntu disco/main amd64 libncurses-dev amd64 6.1+20180210-4ubuntu1 [333 kB] Get:113 http://ftpmaster.internal/ubuntu disco/main amd64 libncurses5-dev amd64 6.1+20180210-4ubuntu1 [972 B] Get:114 http://ftpmaster.internal/ubuntu disco/main amd64 libreadline-dev amd64 7.0-5 [133 kB] Get:115 http://ftpmaster.internal/ubuntu disco/main amd64 libjpeg-turbo8-dev amd64 2.0.0-0ubuntu2 [238 kB] Get:116 http://ftpmaster.internal/ubuntu disco/main amd64 libjpeg8-dev amd64 8c-2ubuntu8 [1552 B] Get:117 http://ftpmaster.internal/ubuntu disco/main amd64 libjpeg-dev amd64 8c-2ubuntu8 [1546 B] Get:118 http://ftpmaster.internal/ubuntu disco/main amd64 libpcre16-3 amd64 2:8.39-11 [149 kB] Get:119 http://ftpmaster.internal/ubuntu disco/main amd64 libpcre32-3 amd64 2:8.39-11 [140 kB] Get:120 http://ftpmaster.internal/ubuntu disco/main amd64 libpcrecpp0v5 amd64 2:8.39-11 [15.7 kB] Get:121 http://ftpmaster.internal/ubuntu disco/main amd64 libpcre3-dev amd64 2:8.39-11 [540 kB] Get:122 http://ftpmaster.internal/ubuntu disco/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-0ubuntu2 [176 kB] Get:123 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libpng-dev amd64 1.6.36-2 [182 kB] Get:124 http://ftpmaster.internal/ubuntu disco/main amd64 libbz2-dev amd64 1.0.6-9 [30.2 kB] Get:125 http://ftpmaster.internal/ubuntu disco/main amd64 liblzma-dev amd64 5.2.2-1.3 [145 kB] Get:126 http://ftpmaster.internal/ubuntu disco/main amd64 icu-devtools amd64 63.1-5 [183 kB] Get:127 http://ftpmaster.internal/ubuntu disco/main amd64 libicu-dev amd64 63.1-5 [9178 kB] Get:128 http://ftpmaster.internal/ubuntu disco/main amd64 pkg-config amd64 0.29.1-0ubuntu2 [45.0 kB] Get:129 http://ftpmaster.internal/ubuntu disco/universe amd64 r-base-dev all 3.5.2-1 [4520 B] Get:130 http://ftpmaster.internal/ubuntu disco/main amd64 libfile-which-perl all 1.23-1 [13.8 kB] Get:131 http://ftpmaster.internal/ubuntu disco/universe amd64 libswitch-perl all 2.17-2 [18.8 kB] Get:132 http://ftpmaster.internal/ubuntu disco/universe amd64 dh-r all 20181206 [32.0 kB] Get:133 http://ftpmaster.internal/ubuntu disco/universe amd64 r-bioc-biocgenerics all 0.28.0-2 [644 kB] Get:134 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-formatr all 1.5-3 [144 kB] Get:135 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-lambda.r all 1.2.3-2 [117 kB] Get:136 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-futile.options all 1.0.1-2 [19.8 kB] Get:137 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-futile.logger all 1.4.3-3 [102 kB] Get:138 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-snow all 1:0.4.3-1 [107 kB] Get:139 http://ftpmaster.internal/ubuntu disco-proposed/universe amd64 r-bioc-biocparallel amd64 1.16.5-1 [1063 kB] Get:140 http://ftpmaster.internal/ubuntu disco/universe amd64 r-bioc-s4vectors amd64 0.20.1-2 [1814 kB] Get:141 http://ftpmaster.internal/ubuntu disco/universe amd64 r-bioc-iranges amd64 2.16.0-1 [2129 kB] Get:142 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-matrixstats amd64 0.54.0-1 [621 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 81.4 MB in 5s (15.2 MB/s) Selecting previously unselected package libxau6:amd64. (Reading database ... 12669 files and directories currently installed.) Preparing to unpack .../000-libxau6_1%3a1.0.8-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.8-1) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../001-libbsd0_0.9.1-1_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-1) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../002-libxdmcp6_1%3a1.1.2-3_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../003-libxcb1_1.13.1-2_amd64.deb ... Unpacking libxcb1:amd64 (1.13.1-2) ... Selecting previously unselected package libx11-data. Preparing to unpack .../004-libx11-data_2%3a1.6.7-1_all.deb ... Unpacking libx11-data (2:1.6.7-1) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../005-libx11-6_2%3a1.6.7-1_amd64.deb ... Unpacking libx11-6:amd64 (2:1.6.7-1) ... Selecting previously unselected package libxext6:amd64. Preparing to unpack .../006-libxext6_2%3a1.3.3-1_amd64.deb ... Unpacking libxext6:amd64 (2:1.3.3-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../007-bsdmainutils_11.1.2ubuntu2_amd64.deb ... Unpacking bsdmainutils (11.1.2ubuntu2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../008-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../009-groff-base_1.22.4-2_amd64.deb ... Unpacking groff-base (1.22.4-2) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../010-libpipeline1_1.5.0-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.0-2) ... Selecting previously unselected package man-db. Preparing to unpack .../011-man-db_2.8.4-3_amd64.deb ... Unpacking man-db (2.8.4-3) ... Selecting previously unselected package x11-common. Preparing to unpack .../012-x11-common_1%3a7.7+19ubuntu8_all.deb ... dpkg-query: no packages found matching nux-tools Unpacking x11-common (1:7.7+19ubuntu8) ... Selecting previously unselected package libice6:amd64. Preparing to unpack .../013-libice6_2%3a1.0.9-2_amd64.deb ... Unpacking libice6:amd64 (2:1.0.9-2) ... Selecting previously unselected package libsm6:amd64. Preparing to unpack .../014-libsm6_2%3a1.2.2-1_amd64.deb ... Unpacking libsm6:amd64 (2:1.2.2-1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../015-libmagic-mgc_1%3a5.34-2_amd64.deb ... Unpacking libmagic-mgc (1:5.34-2) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../016-libmagic1_1%3a5.34-2_amd64.deb ... Unpacking libmagic1:amd64 (1:5.34-2) ... Selecting previously unselected package file. Preparing to unpack .../017-file_1%3a5.34-2_amd64.deb ... Unpacking file (1:5.34-2) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../018-libelf1_0.175-2_amd64.deb ... Unpacking libelf1:amd64 (0.175-2) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../019-libexpat1_2.2.6-1_amd64.deb ... Unpacking libexpat1:amd64 (2.2.6-1) ... Selecting previously unselected package libfribidi0:amd64. Preparing to unpack .../020-libfribidi0_1.0.5-3_amd64.deb ... Unpacking libfribidi0:amd64 (1.0.5-3) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../021-libglib2.0-0_2.58.1-2_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.58.1-2) ... Selecting previously unselected package libicu63:amd64. Preparing to unpack .../022-libicu63_63.1-5_amd64.deb ... Unpacking libicu63:amd64 (63.1-5) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../023-libxml2_2.9.4+dfsg1-7ubuntu3_amd64.deb ... Unpacking libxml2:amd64 (2.9.4+dfsg1-7ubuntu3) ... Selecting previously unselected package ucf. Preparing to unpack .../024-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../025-gettext-base_0.19.8.1-9_amd64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../026-libkrb5support0_1.16.2-1_amd64.deb ... Unpacking libkrb5support0:amd64 (1.16.2-1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../027-libk5crypto3_1.16.2-1_amd64.deb ... Unpacking libk5crypto3:amd64 (1.16.2-1) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../028-libkeyutils1_1.5.9-9.3_amd64.deb ... Unpacking libkeyutils1:amd64 (1.5.9-9.3) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../029-libkrb5-3_1.16.2-1_amd64.deb ... Unpacking libkrb5-3:amd64 (1.16.2-1) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../030-libgssapi-krb5-2_1.16.2-1_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.16.2-1) ... Selecting previously unselected package libpsl5:amd64. Preparing to unpack .../031-libpsl5_0.20.2-2_amd64.deb ... Unpacking libpsl5:amd64 (0.20.2-2) ... Selecting previously unselected package libxmuu1:amd64. Preparing to unpack .../032-libxmuu1_2%3a1.1.2-2_amd64.deb ... Unpacking libxmuu1:amd64 (2:1.1.2-2) ... Selecting previously unselected package xauth. Preparing to unpack .../033-xauth_1%3a1.0.10-1_amd64.deb ... Unpacking xauth (1:1.0.10-1) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../034-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../035-m4_1.4.18-2_amd64.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../036-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../037-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../038-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../039-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package dctrl-tools. Preparing to unpack .../040-dctrl-tools_2.24-3_amd64.deb ... Unpacking dctrl-tools (2.24-3) ... Selecting previously unselected package libtool. Preparing to unpack .../041-libtool_2.4.6-6_all.deb ... Unpacking libtool (2.4.6-6) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../042-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../043-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../044-libfile-stripnondeterminism-perl_1.0.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.0.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../045-dh-strip-nondeterminism_1.0.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.0.0-1) ... Selecting previously unselected package dwz. Preparing to unpack .../046-dwz_0.12-3_amd64.deb ... Unpacking dwz (0.12-3) ... Selecting previously unselected package libcroco3:amd64. Preparing to unpack .../047-libcroco3_0.6.12-3_amd64.deb ... Unpacking libcroco3:amd64 (0.6.12-3) ... Selecting previously unselected package gettext. Preparing to unpack .../048-gettext_0.19.8.1-9_amd64.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../049-intltool-debian_0.35.0+20060710.4_all.deb ... Unpacking intltool-debian (0.35.0+20060710.4) ... Selecting previously unselected package po-debconf. Preparing to unpack .../050-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../051-debhelper_12ubuntu1_all.deb ... Unpacking debhelper (12ubuntu1) ... Selecting previously unselected package zip. Preparing to unpack .../052-zip_3.0-11build1_amd64.deb ... Unpacking zip (3.0-11build1) ... Selecting previously unselected package unzip. Preparing to unpack .../053-unzip_6.0-21ubuntu1_amd64.deb ... Unpacking unzip (6.0-21ubuntu1) ... Selecting previously unselected package libpaper1:amd64. Preparing to unpack .../054-libpaper1_1.1.26_amd64.deb ... Unpacking libpaper1:amd64 (1.1.26) ... Selecting previously unselected package libpaper-utils. Preparing to unpack .../055-libpaper-utils_1.1.26_amd64.deb ... Unpacking libpaper-utils (1.1.26) ... Selecting previously unselected package xdg-utils. Preparing to unpack .../056-xdg-utils_1.1.3-1ubuntu2_all.deb ... Unpacking xdg-utils (1.1.3-1ubuntu2) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../057-libblas3_3.8.0-2_amd64.deb ... Unpacking libblas3:amd64 (3.8.0-2) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../058-libfreetype6_2.8.1-2ubuntu2_amd64.deb ... Unpacking libfreetype6:amd64 (2.8.1-2ubuntu2) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../059-fonts-dejavu-core_2.37-1_all.deb ... Unpacking fonts-dejavu-core (2.37-1) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../060-fontconfig-config_2.13.0-5ubuntu3_all.deb ... Unpacking fontconfig-config (2.13.0-5ubuntu3) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../061-libfontconfig1_2.13.0-5ubuntu3_amd64.deb ... Unpacking libfontconfig1:amd64 (2.13.0-5ubuntu3) ... Selecting previously unselected package libpixman-1-0:amd64. Preparing to unpack .../062-libpixman-1-0_0.36.0-1_amd64.deb ... Unpacking libpixman-1-0:amd64 (0.36.0-1) ... Selecting previously unselected package libxcb-render0:amd64. Preparing to unpack .../063-libxcb-render0_1.13.1-2_amd64.deb ... Unpacking libxcb-render0:amd64 (1.13.1-2) ... Selecting previously unselected package libxcb-shm0:amd64. Preparing to unpack .../064-libxcb-shm0_1.13.1-2_amd64.deb ... Unpacking libxcb-shm0:amd64 (1.13.1-2) ... Selecting previously unselected package libxrender1:amd64. Preparing to unpack .../065-libxrender1_1%3a0.9.10-1_amd64.deb ... Unpacking libxrender1:amd64 (1:0.9.10-1) ... Selecting previously unselected package libcairo2:amd64. Preparing to unpack .../066-libcairo2_1.16.0-2_amd64.deb ... Unpacking libcairo2:amd64 (1.16.0-2) ... Selecting previously unselected package libroken18-heimdal:amd64. Preparing to unpack .../067-libroken18-heimdal_7.5.0+dfsg-2.1_amd64.deb ... Unpacking libroken18-heimdal:amd64 (7.5.0+dfsg-2.1) ... Selecting previously unselected package libasn1-8-heimdal:amd64. Preparing to unpack .../068-libasn1-8-heimdal_7.5.0+dfsg-2.1_amd64.deb ... Unpacking libasn1-8-heimdal:amd64 (7.5.0+dfsg-2.1) ... Selecting previously unselected package libheimbase1-heimdal:amd64. Preparing to unpack .../069-libheimbase1-heimdal_7.5.0+dfsg-2.1_amd64.deb ... Unpacking libheimbase1-heimdal:amd64 (7.5.0+dfsg-2.1) ... Selecting previously unselected package libhcrypto4-heimdal:amd64. Preparing to unpack .../070-libhcrypto4-heimdal_7.5.0+dfsg-2.1_amd64.deb ... Unpacking libhcrypto4-heimdal:amd64 (7.5.0+dfsg-2.1) ... Selecting previously unselected package libwind0-heimdal:amd64. Preparing to unpack .../071-libwind0-heimdal_7.5.0+dfsg-2.1_amd64.deb ... Unpacking libwind0-heimdal:amd64 (7.5.0+dfsg-2.1) ... Selecting previously unselected package libhx509-5-heimdal:amd64. Preparing to unpack .../072-libhx509-5-heimdal_7.5.0+dfsg-2.1_amd64.deb ... Unpacking libhx509-5-heimdal:amd64 (7.5.0+dfsg-2.1) ... Selecting previously unselected package libkrb5-26-heimdal:amd64. Preparing to unpack .../073-libkrb5-26-heimdal_7.5.0+dfsg-2.1_amd64.deb ... Unpacking libkrb5-26-heimdal:amd64 (7.5.0+dfsg-2.1) ... Selecting previously unselected package libheimntlm0-heimdal:amd64. Preparing to unpack .../074-libheimntlm0-heimdal_7.5.0+dfsg-2.1_amd64.deb ... Unpacking libheimntlm0-heimdal:amd64 (7.5.0+dfsg-2.1) ... Selecting previously unselected package libgssapi3-heimdal:amd64. Preparing to unpack .../075-libgssapi3-heimdal_7.5.0+dfsg-2.1_amd64.deb ... Unpacking libgssapi3-heimdal:amd64 (7.5.0+dfsg-2.1) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../076-libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3ubuntu2_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.27~101-g0780600+dfsg-3ubuntu2) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../077-libsasl2-2_2.1.27~101-g0780600+dfsg-3ubuntu2_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.27~101-g0780600+dfsg-3ubuntu2) ... Selecting previously unselected package libldap-common. Preparing to unpack .../078-libldap-common_2.4.46+dfsg-5ubuntu3_all.deb ... Unpacking libldap-common (2.4.46+dfsg-5ubuntu3) ... Selecting previously unselected package libldap-2.4-2:amd64. Preparing to unpack .../079-libldap-2.4-2_2.4.46+dfsg-5ubuntu3_amd64.deb ... Unpacking libldap-2.4-2:amd64 (2.4.46+dfsg-5ubuntu3) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../080-libnghttp2-14_1.35.1-1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.35.1-1) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../081-librtmp1_2.4+20151223.gitfa8646d.1-2_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2) ... Selecting previously unselected package libcurl4:amd64. Preparing to unpack .../082-libcurl4_7.61.0-1ubuntu2.2_amd64.deb ... Unpacking libcurl4:amd64 (7.61.0-1ubuntu2.2) ... Selecting previously unselected package libjpeg-turbo8:amd64. Preparing to unpack .../083-libjpeg-turbo8_2.0.0-0ubuntu2_amd64.deb ... Unpacking libjpeg-turbo8:amd64 (2.0.0-0ubuntu2) ... Selecting previously unselected package libjpeg8:amd64. Preparing to unpack .../084-libjpeg8_8c-2ubuntu8_amd64.deb ... Unpacking libjpeg8:amd64 (8c-2ubuntu8) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../085-libgfortran5_8.2.0-13ubuntu1_amd64.deb ... Unpacking libgfortran5:amd64 (8.2.0-13ubuntu1) ... Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../086-liblapack3_3.8.0-2_amd64.deb ... Unpacking liblapack3:amd64 (3.8.0-2) ... Selecting previously unselected package fontconfig. Preparing to unpack .../087-fontconfig_2.13.0-5ubuntu3_amd64.deb ... Unpacking fontconfig (2.13.0-5ubuntu3) ... Selecting previously unselected package libthai-data. Preparing to unpack .../088-libthai-data_0.1.28-1_all.deb ... Unpacking libthai-data (0.1.28-1) ... Selecting previously unselected package libdatrie1:amd64. Preparing to unpack .../089-libdatrie1_0.2.12-1_amd64.deb ... Unpacking libdatrie1:amd64 (0.2.12-1) ... Selecting previously unselected package libthai0:amd64. Preparing to unpack .../090-libthai0_0.1.28-1_amd64.deb ... Unpacking libthai0:amd64 (0.1.28-1) ... Selecting previously unselected package libpango-1.0-0:amd64. Preparing to unpack .../091-libpango-1.0-0_1.42.4-6_amd64.deb ... Unpacking libpango-1.0-0:amd64 (1.42.4-6) ... Selecting previously unselected package libgraphite2-3:amd64. Preparing to unpack .../092-libgraphite2-3_1.3.12-1_amd64.deb ... Unpacking libgraphite2-3:amd64 (1.3.12-1) ... Selecting previously unselected package libharfbuzz0b:amd64. Preparing to unpack .../093-libharfbuzz0b_2.3.0-1_amd64.deb ... Unpacking libharfbuzz0b:amd64 (2.3.0-1) ... Selecting previously unselected package libpangoft2-1.0-0:amd64. Preparing to unpack .../094-libpangoft2-1.0-0_1.42.4-6_amd64.deb ... Unpacking libpangoft2-1.0-0:amd64 (1.42.4-6) ... Selecting previously unselected package libpangocairo-1.0-0:amd64. Preparing to unpack .../095-libpangocairo-1.0-0_1.42.4-6_amd64.deb ... Unpacking libpangocairo-1.0-0:amd64 (1.42.4-6) ... Selecting previously unselected package libtcl8.6:amd64. Preparing to unpack .../096-libtcl8.6_8.6.9+dfsg-1_amd64.deb ... Unpacking libtcl8.6:amd64 (8.6.9+dfsg-1) ... Selecting previously unselected package libjbig0:amd64. Preparing to unpack .../097-libjbig0_2.1-3.1build1_amd64.deb ... Unpacking libjbig0:amd64 (2.1-3.1build1) ... Selecting previously unselected package libwebp6:amd64. Preparing to unpack .../098-libwebp6_0.6.1-2_amd64.deb ... Unpacking libwebp6:amd64 (0.6.1-2) ... Selecting previously unselected package libtiff5:amd64. Preparing to unpack .../099-libtiff5_4.0.10-3_amd64.deb ... Unpacking libtiff5:amd64 (4.0.10-3) ... Selecting previously unselected package libxft2:amd64. Preparing to unpack .../100-libxft2_2.3.2-2_amd64.deb ... Unpacking libxft2:amd64 (2.3.2-2) ... Selecting previously unselected package libxss1:amd64. Preparing to unpack .../101-libxss1_1%3a1.2.3-1_amd64.deb ... Unpacking libxss1:amd64 (1:1.2.3-1) ... Selecting previously unselected package libtk8.6:amd64. Preparing to unpack .../102-libtk8.6_8.6.9-1_amd64.deb ... Unpacking libtk8.6:amd64 (8.6.9-1) ... Selecting previously unselected package libxt6:amd64. Preparing to unpack .../103-libxt6_1%3a1.1.5-1_amd64.deb ... Unpacking libxt6:amd64 (1:1.1.5-1) ... Selecting previously unselected package r-base-core. Preparing to unpack .../104-r-base-core_3.5.2-1_amd64.deb ... Unpacking r-base-core (3.5.2-1) ... Selecting previously unselected package libgfortran-8-dev:amd64. Preparing to unpack .../105-libgfortran-8-dev_8.2.0-13ubuntu1_amd64.deb ... Unpacking libgfortran-8-dev:amd64 (8.2.0-13ubuntu1) ... Selecting previously unselected package gfortran-8. Preparing to unpack .../106-gfortran-8_8.2.0-13ubuntu1_amd64.deb ... Unpacking gfortran-8 (8.2.0-13ubuntu1) ... Selecting previously unselected package gfortran. Preparing to unpack .../107-gfortran_4%3a8.2.0-2ubuntu2_amd64.deb ... Unpacking gfortran (4:8.2.0-2ubuntu2) ... Selecting previously unselected package libblas-dev:amd64. Preparing to unpack .../108-libblas-dev_3.8.0-2_amd64.deb ... Unpacking libblas-dev:amd64 (3.8.0-2) ... Selecting previously unselected package liblapack-dev:amd64. Preparing to unpack .../109-liblapack-dev_3.8.0-2_amd64.deb ... Unpacking liblapack-dev:amd64 (3.8.0-2) ... Selecting previously unselected package libncurses-dev:amd64. Preparing to unpack .../110-libncurses-dev_6.1+20180210-4ubuntu1_amd64.deb ... Unpacking libncurses-dev:amd64 (6.1+20180210-4ubuntu1) ... Selecting previously unselected package libncurses5-dev:amd64. Preparing to unpack .../111-libncurses5-dev_6.1+20180210-4ubuntu1_amd64.deb ... Unpacking libncurses5-dev:amd64 (6.1+20180210-4ubuntu1) ... Selecting previously unselected package libreadline-dev:amd64. Preparing to unpack .../112-libreadline-dev_7.0-5_amd64.deb ... Unpacking libreadline-dev:amd64 (7.0-5) ... Selecting previously unselected package libjpeg-turbo8-dev:amd64. Preparing to unpack .../113-libjpeg-turbo8-dev_2.0.0-0ubuntu2_amd64.deb ... Unpacking libjpeg-turbo8-dev:amd64 (2.0.0-0ubuntu2) ... Selecting previously unselected package libjpeg8-dev:amd64. Preparing to unpack .../114-libjpeg8-dev_8c-2ubuntu8_amd64.deb ... Unpacking libjpeg8-dev:amd64 (8c-2ubuntu8) ... Selecting previously unselected package libjpeg-dev:amd64. Preparing to unpack .../115-libjpeg-dev_8c-2ubuntu8_amd64.deb ... Unpacking libjpeg-dev:amd64 (8c-2ubuntu8) ... Selecting previously unselected package libpcre16-3:amd64. Preparing to unpack .../116-libpcre16-3_2%3a8.39-11_amd64.deb ... Unpacking libpcre16-3:amd64 (2:8.39-11) ... Selecting previously unselected package libpcre32-3:amd64. Preparing to unpack .../117-libpcre32-3_2%3a8.39-11_amd64.deb ... Unpacking libpcre32-3:amd64 (2:8.39-11) ... Selecting previously unselected package libpcrecpp0v5:amd64. Preparing to unpack .../118-libpcrecpp0v5_2%3a8.39-11_amd64.deb ... Unpacking libpcrecpp0v5:amd64 (2:8.39-11) ... Selecting previously unselected package libpcre3-dev:amd64. Preparing to unpack .../119-libpcre3-dev_2%3a8.39-11_amd64.deb ... Unpacking libpcre3-dev:amd64 (2:8.39-11) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../120-zlib1g-dev_1%3a1.2.11.dfsg-0ubuntu2_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.2.11.dfsg-0ubuntu2) ... Selecting previously unselected package libpng-dev:amd64. Preparing to unpack .../121-libpng-dev_1.6.36-2_amd64.deb ... Unpacking libpng-dev:amd64 (1.6.36-2) ... Selecting previously unselected package libbz2-dev:amd64. Preparing to unpack .../122-libbz2-dev_1.0.6-9_amd64.deb ... Unpacking libbz2-dev:amd64 (1.0.6-9) ... Selecting previously unselected package liblzma-dev:amd64. Preparing to unpack .../123-liblzma-dev_5.2.2-1.3_amd64.deb ... Unpacking liblzma-dev:amd64 (5.2.2-1.3) ... Selecting previously unselected package icu-devtools. Preparing to unpack .../124-icu-devtools_63.1-5_amd64.deb ... Unpacking icu-devtools (63.1-5) ... Selecting previously unselected package libicu-dev. Preparing to unpack .../125-libicu-dev_63.1-5_amd64.deb ... Unpacking libicu-dev (63.1-5) ... Selecting previously unselected package pkg-config. Preparing to unpack .../126-pkg-config_0.29.1-0ubuntu2_amd64.deb ... Unpacking pkg-config (0.29.1-0ubuntu2) ... Selecting previously unselected package r-base-dev. Preparing to unpack .../127-r-base-dev_3.5.2-1_all.deb ... Unpacking r-base-dev (3.5.2-1) ... Selecting previously unselected package libfile-which-perl. Preparing to unpack .../128-libfile-which-perl_1.23-1_all.deb ... Unpacking libfile-which-perl (1.23-1) ... Selecting previously unselected package libswitch-perl. Preparing to unpack .../129-libswitch-perl_2.17-2_all.deb ... Unpacking libswitch-perl (2.17-2) ... Selecting previously unselected package dh-r. Preparing to unpack .../130-dh-r_20181206_all.deb ... Unpacking dh-r (20181206) ... Selecting previously unselected package r-bioc-biocgenerics. Preparing to unpack .../131-r-bioc-biocgenerics_0.28.0-2_all.deb ... Unpacking r-bioc-biocgenerics (0.28.0-2) ... Selecting previously unselected package r-cran-formatr. Preparing to unpack .../132-r-cran-formatr_1.5-3_all.deb ... Unpacking r-cran-formatr (1.5-3) ... Selecting previously unselected package r-cran-lambda.r. Preparing to unpack .../133-r-cran-lambda.r_1.2.3-2_all.deb ... Unpacking r-cran-lambda.r (1.2.3-2) ... Selecting previously unselected package r-cran-futile.options. Preparing to unpack .../134-r-cran-futile.options_1.0.1-2_all.deb ... Unpacking r-cran-futile.options (1.0.1-2) ... Selecting previously unselected package r-cran-futile.logger. Preparing to unpack .../135-r-cran-futile.logger_1.4.3-3_all.deb ... Unpacking r-cran-futile.logger (1.4.3-3) ... Selecting previously unselected package r-cran-snow. Preparing to unpack .../136-r-cran-snow_1%3a0.4.3-1_all.deb ... Unpacking r-cran-snow (1:0.4.3-1) ... Selecting previously unselected package r-bioc-biocparallel. Preparing to unpack .../137-r-bioc-biocparallel_1.16.5-1_amd64.deb ... Unpacking r-bioc-biocparallel (1.16.5-1) ... Selecting previously unselected package r-bioc-s4vectors. Preparing to unpack .../138-r-bioc-s4vectors_0.20.1-2_amd64.deb ... Unpacking r-bioc-s4vectors (0.20.1-2) ... Selecting previously unselected package r-bioc-iranges. Preparing to unpack .../139-r-bioc-iranges_2.16.0-1_amd64.deb ... Unpacking r-bioc-iranges (2.16.0-1) ... Selecting previously unselected package r-cran-matrixstats. Preparing to unpack .../140-r-cran-matrixstats_0.54.0-1_amd64.deb ... Unpacking r-cran-matrixstats (0.54.0-1) ... Selecting previously unselected package sbuild-build-depends-r-bioc-delayedarray-dummy. Preparing to unpack .../141-sbuild-build-depends-r-bioc-delayedarray-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-r-bioc-delayedarray-dummy (0.invalid.0) ... Setting up libexpat1:amd64 (2.2.6-1) ... Setting up libbz2-dev:amd64 (1.0.6-9) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libnghttp2-14:amd64 (1.35.1-1) ... Setting up libicu63:amd64 (63.1-5) ... Setting up libfile-which-perl (1.23-1) ... Setting up libjbig0:amd64 (2.1-3.1build1) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up libldap-common (2.4.46+dfsg-5ubuntu3) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up libpsl5:amd64 (0.20.2-2) ... Setting up libelf1:amd64 (0.175-2) ... Setting up libglib2.0-0:amd64 (2.58.1-2) ... No schema files found: doing nothing. Setting up libsasl2-modules-db:amd64 (2.1.27~101-g0780600+dfsg-3ubuntu2) ... Setting up unzip (6.0-21ubuntu1) ... Setting up libsasl2-2:amd64 (2.1.27~101-g0780600+dfsg-3ubuntu2) ... Setting up dctrl-tools (2.24-3) ... Setting up libdatrie1:amd64 (0.2.12-1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up libjpeg-turbo8:amd64 (2.0.0-0ubuntu2) ... Setting up libpipeline1:amd64 (1.5.0-2) ... Setting up libroken18-heimdal:amd64 (7.5.0+dfsg-2.1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2) ... Setting up libswitch-perl (2.17-2) ... Setting up m4 (1.4.18-2) ... Setting up libbsd0:amd64 (0.9.1-1) ... Setting up libkrb5support0:amd64 (1.16.2-1) ... Setting up ucf (3.0038+nmu1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7ubuntu3) ... Setting up zip (3.0-11build1) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libfreetype6:amd64 (2.8.1-2ubuntu2) ... Setting up libmagic-mgc (1:5.34-2) ... Setting up libmagic1:amd64 (1:5.34-2) ... Setting up libgraphite2-3:amd64 (1.3.12-1) ... Setting up libcroco3:amd64 (0.6.12-3) ... Setting up pkg-config (0.29.1-0ubuntu2) ... Setting up libpixman-1-0:amd64 (0.36.0-1) ... Setting up libblas3:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libjpeg-turbo8-dev:amd64 (2.0.0-0ubuntu2) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... Setting up dwz (0.12-3) ... Setting up autotools-dev (20180224.1) ... Setting up libheimbase1-heimdal:amd64 (7.5.0+dfsg-2.1) ... Processing triggers for systemd (239-7ubuntu15) ... Setting up libfribidi0:amd64 (1.0.5-3) ... Setting up libpcrecpp0v5:amd64 (2:8.39-11) ... Setting up libpcre32-3:amd64 (2:8.39-11) ... Setting up icu-devtools (63.1-5) ... Setting up libpcre16-3:amd64 (2:8.39-11) ... Setting up libtcl8.6:amd64 (8.6.9+dfsg-1) ... Setting up libthai-data (0.1.28-1) ... Setting up liblzma-dev:amd64 (5.2.2-1.3) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libkeyutils1:amd64 (1.5.9-9.3) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up x11-common (1:7.7+19ubuntu8) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up xdg-utils (1.1.3-1ubuntu2) ... Setting up libncurses-dev:amd64 (6.1+20180210-4ubuntu1) ... Setting up libgfortran5:amd64 (8.2.0-13ubuntu1) ... Setting up libx11-data (2:1.6.7-1) ... Setting up libxau6:amd64 (1:1.0.8-1) ... Setting up autopoint (0.19.8.1-9) ... Setting up libwebp6:amd64 (0.6.1-2) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-0ubuntu2) ... Setting up libfile-stripnondeterminism-perl (1.0.0-1) ... Setting up libjpeg8:amd64 (8c-2ubuntu8) ... Setting up libpaper1:amd64 (1.1.26) ... Creating config file /etc/papersize with new version Setting up libk5crypto3:amd64 (1.16.2-1) ... Setting up libpaper-utils (1.1.26) ... Setting up libpcre3-dev:amd64 (2:8.39-11) ... Setting up fontconfig-config (2.13.0-5ubuntu3) ... Setting up libwind0-heimdal:amd64 (7.5.0+dfsg-2.1) ... Setting up gettext (0.19.8.1-9) ... Setting up libblas-dev:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode Setting up libasn1-8-heimdal:amd64 (7.5.0+dfsg-2.1) ... Setting up groff-base (1.22.4-2) ... Setting up liblapack3:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libhcrypto4-heimdal:amd64 (7.5.0+dfsg-2.1) ... Setting up libharfbuzz0b:amd64 (2.3.0-1) ... Setting up libtiff5:amd64 (4.0.10-3) ... Setting up autoconf (2.69-11) ... Setting up libthai0:amd64 (0.1.28-1) ... Setting up libicu-dev (63.1-5) ... Setting up file (1:5.34-2) ... Setting up libhx509-5-heimdal:amd64 (7.5.0+dfsg-2.1) ... Setting up libncurses5-dev:amd64 (6.1+20180210-4ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libjpeg8-dev:amd64 (8c-2ubuntu8) ... Setting up libjpeg-dev:amd64 (8c-2ubuntu8) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libreadline-dev:amd64 (7.0-5) ... Setting up libice6:amd64 (2:1.0.9-2) ... Setting up man-db (2.8.4-3) ... Not building database; man-db/auto-update is not 'true'. Setting up libkrb5-3:amd64 (1.16.2-1) ... Setting up libkrb5-26-heimdal:amd64 (7.5.0+dfsg-2.1) ... Setting up libpng-dev:amd64 (1.6.36-2) ... Setting up libgfortran-8-dev:amd64 (8.2.0-13ubuntu1) ... Setting up libxcb1:amd64 (1.13.1-2) ... Setting up libheimntlm0-heimdal:amd64 (7.5.0+dfsg-2.1) ... Setting up liblapack-dev:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up libtool (2.4.6-6) ... Setting up libfontconfig1:amd64 (2.13.0-5ubuntu3) ... Setting up libsm6:amd64 (2:1.2.2-1) ... Setting up libxcb-render0:amd64 (1.13.1-2) ... Setting up po-debconf (1.0.21) ... Setting up gfortran-8 (8.2.0-13ubuntu1) ... Setting up libx11-6:amd64 (2:1.6.7-1) ... Setting up libxmuu1:amd64 (2:1.1.2-2) ... Setting up libgssapi-krb5-2:amd64 (1.16.2-1) ... Setting up libxcb-shm0:amd64 (1.13.1-2) ... Setting up libxt6:amd64 (1:1.1.5-1) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libxft2:amd64 (2.3.2-2) ... Setting up libgssapi3-heimdal:amd64 (7.5.0+dfsg-2.1) ... Setting up fontconfig (2.13.0-5ubuntu3) ... Regenerating fonts cache... done. Setting up gfortran (4:8.2.0-2ubuntu2) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libxext6:amd64 (2:1.3.3-1) ... Setting up libxss1:amd64 (1:1.2.3-1) ... Setting up xauth (1:1.0.10-1) ... Setting up libldap-2.4-2:amd64 (2.4.46+dfsg-5ubuntu3) ... Setting up libpango-1.0-0:amd64 (1.42.4-6) ... Setting up libcairo2:amd64 (1.16.0-2) ... Setting up libtk8.6:amd64 (8.6.9-1) ... Setting up libcurl4:amd64 (7.61.0-1ubuntu2.2) ... Setting up libpangoft2-1.0-0:amd64 (1.42.4-6) ... Setting up libpangocairo-1.0-0:amd64 (1.42.4-6) ... Setting up r-base-core (3.5.2-1) ... Creating config file /etc/R/Renviron with new version Setting up r-base-dev (3.5.2-1) ... Setting up r-bioc-biocgenerics (0.28.0-2) ... Setting up r-cran-formatr (1.5-3) ... Setting up r-cran-futile.options (1.0.1-2) ... Setting up r-cran-lambda.r (1.2.3-2) ... Setting up r-cran-matrixstats (0.54.0-1) ... Setting up r-cran-snow (1:0.4.3-1) ... Setting up r-bioc-s4vectors (0.20.1-2) ... Setting up r-cran-futile.logger (1.4.3-3) ... Setting up r-bioc-iranges (2.16.0-1) ... Setting up r-bioc-biocparallel (1.16.5-1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.0.0-1) ... Setting up debhelper (12ubuntu1) ... Setting up dh-r (20181206) ... Setting up sbuild-build-depends-r-bioc-delayedarray-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... Processing triggers for systemd (239-7ubuntu15) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-141-generic amd64 (x86_64) Toolchain package versions: binutils_2.31.1-11ubuntu1 dpkg-dev_1.19.2ubuntu2 g++-8_8.2.0-13ubuntu1 gcc-8_8.2.0-13ubuntu1 libc6-dev_2.28-0ubuntu1 libstdc++-8-dev_8.2.0-13ubuntu1 libstdc++6_8.2.0-13ubuntu1 linux-libc-dev_4.19.0-9.10 Package versions: adduser_3.117ubuntu1 advancecomp_2.1-1 apt_1.8.0~alpha3 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1ubuntu8 base-passwd_3.5.45 bash_4.4.18-2ubuntu3 binutils_2.31.1-11ubuntu1 binutils-common_2.31.1-11ubuntu1 binutils-x86-64-linux-gnu_2.31.1-11ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.32-0.1ubuntu2 build-essential_12.5ubuntu2 bzip2_1.0.6-9 ca-certificates_20180409 coreutils_8.28-1ubuntu2 cpp_4:8.2.0-2ubuntu2 cpp-8_8.2.0-13ubuntu1 dash_0.5.10.2-4 dctrl-tools_2.24-3 debconf_1.5.69 debhelper_12ubuntu1 debianutils_4.8.6 dh-autoreconf_19 dh-r_20181206 dh-strip-nondeterminism_1.0.0-1 diffutils_1:3.6-1 dmsetup_2:1.02.145-4.1ubuntu4 dpkg_1.19.2ubuntu2 dpkg-dev_1.19.2ubuntu2 dwz_0.12-3 e2fslibs_1.44.5-1 e2fsprogs_1.44.5-1 fakeroot_1.23-1 fdisk_2.32-0.1ubuntu2 file_1:5.34-2 findutils_4.6.0+git+20181018-1 fontconfig_2.13.0-5ubuntu3 fontconfig-config_2.13.0-5ubuntu3 fonts-dejavu-core_2.37-1 g++_4:8.2.0-2ubuntu2 g++-8_8.2.0-13ubuntu1 gcc_4:8.2.0-2ubuntu2 gcc-8_8.2.0-13ubuntu1 gcc-8-base_8.2.0-13ubuntu1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gfortran_4:8.2.0-2ubuntu2 gfortran-8_8.2.0-13ubuntu1 gpg_2.2.8-3ubuntu1 gpg-agent_2.2.8-3ubuntu1 gpgconf_2.2.8-3ubuntu1 gpgv_2.2.8-3ubuntu1 grep_3.1-3 groff-base_1.22.4-2 gzip_1.6-5ubuntu2 hostname_3.21 icu-devtools_63.1-5 init_1.56+nmu1 init-system-helpers_1.56+nmu1 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libapparmor1_2.12-4ubuntu10 libapt-pkg5.0_1.8.0~alpha3 libarchive-zip-perl_1.64-1 libargon2-1_0~20171227-0.1 libasan5_8.2.0-13ubuntu1 libasn1-8-heimdal_7.5.0+dfsg-2.1 libassuan0_2.5.2-1 libatomic1_8.2.0-13ubuntu1 libattr1_1:2.4.47-2build1 libaudit-common_1:2.8.3-1ubuntu3 libaudit1_1:2.8.3-1ubuntu3 libbinutils_2.31.1-11ubuntu1 libblas-dev_3.8.0-2 libblas3_3.8.0-2 libblkid1_2.32-0.1ubuntu2 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-9 libbz2-dev_1.0.6-9 libc-bin_2.28-0ubuntu1 libc-dev-bin_2.28-0ubuntu1 libc6_2.28-0ubuntu1 libc6-dev_2.28-0ubuntu1 libcairo2_1.16.0-2 libcap-ng0_0.7.9-1build1 libcap2_1:2.25-1.2 libcc1-0_8.2.0-13ubuntu1 libcom-err2_1.44.5-1 libcomerr2_1.44.5-1 libcroco3_0.6.12-3 libcryptsetup12_2:2.0.4-2ubuntu2 libcurl4_7.61.0-1ubuntu2.2 libdatrie1_0.2.12-1 libdb5.3_5.3.28+dfsg1-0.2 libdebconfclient0_0.244ubuntu1 libdevmapper1.02.1_2:1.02.145-4.1ubuntu4 libdpkg-perl_1.19.2ubuntu2 libelf1_0.175-2 libexpat1_2.2.6-1 libext2fs2_1.44.5-1 libfakeroot_1.23-1 libfdisk1_2.32-0.1ubuntu2 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.0.0-1 libfile-which-perl_1.23-1 libfontconfig1_2.13.0-5ubuntu3 libfreetype6_2.8.1-2ubuntu2 libfribidi0_1.0.5-3 libgcc-8-dev_8.2.0-13ubuntu1 libgcc1_1:8.2.0-13ubuntu1 libgcrypt20_1.8.4-3ubuntu1 libgdbm-compat4_1.18.1-2 libgdbm6_1.18.1-2 libgfortran-8-dev_8.2.0-13ubuntu1 libgfortran5_8.2.0-13ubuntu1 libglib2.0-0_2.58.1-2 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.5-2ubuntu1 libgomp1_8.2.0-13ubuntu1 libgpg-error0_1.33-3 libgraphite2-3_1.3.12-1 libgssapi-krb5-2_1.16.2-1 libgssapi3-heimdal_7.5.0+dfsg-2.1 libharfbuzz0b_2.3.0-1 libhcrypto4-heimdal_7.5.0+dfsg-2.1 libheimbase1-heimdal_7.5.0+dfsg-2.1 libheimntlm0-heimdal_7.5.0+dfsg-2.1 libhogweed4_3.4.1~rc1-1 libhx509-5-heimdal_7.5.0+dfsg-2.1 libice6_2:1.0.9-2 libicu-dev_63.1-5 libicu63_63.1-5 libidn11_1.33-2.2ubuntu1 libidn2-0_2.0.5-1 libip4tc0_1.6.1-2ubuntu3 libisl19_0.20-2 libitm1_8.2.0-13ubuntu1 libjbig0_2.1-3.1build1 libjpeg-dev_8c-2ubuntu8 libjpeg-turbo8_2.0.0-0ubuntu2 libjpeg-turbo8-dev_2.0.0-0ubuntu2 libjpeg8_8c-2ubuntu8 libjpeg8-dev_8c-2ubuntu8 libjson-c3_0.12.1-1.3 libk5crypto3_1.16.2-1 libkeyutils1_1.5.9-9.3 libkmod2_25-1ubuntu2 libkrb5-26-heimdal_7.5.0+dfsg-2.1 libkrb5-3_1.16.2-1 libkrb5support0_1.16.2-1 liblapack-dev_3.8.0-2 liblapack3_3.8.0-2 libldap-2.4-2_2.4.46+dfsg-5ubuntu3 libldap-common_2.4.46+dfsg-5ubuntu3 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 liblsan0_8.2.0-13ubuntu1 liblz4-1_1.8.2-1ubuntu1 liblzma-dev_5.2.2-1.3 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.34-2 libmagic1_1:5.34-2 libmount1_2.32-0.1ubuntu2 libmpc3_1.1.0-1 libmpfr6_4.0.1-2 libmpx2_8.2.0-13ubuntu1 libncurses-dev_6.1+20180210-4ubuntu1 libncurses5-dev_6.1+20180210-4ubuntu1 libncurses6_6.1+20180210-4ubuntu1 libncursesw6_6.1+20180210-4ubuntu1 libnettle6_3.4.1~rc1-1 libnghttp2-14_1.35.1-1 libnpth0_1.6-1 libp11-kit0_0.23.14-2 libpam-modules_1.1.8-3.6ubuntu2 libpam-modules-bin_1.1.8-3.6ubuntu2 libpam-runtime_1.1.8-3.6ubuntu2 libpam0g_1.1.8-3.6ubuntu2 libpango-1.0-0_1.42.4-6 libpangocairo-1.0-0_1.42.4-6 libpangoft2-1.0-0_1.42.4-6 libpaper-utils_1.1.26 libpaper1_1.1.26 libpcre16-3_2:8.39-11 libpcre3_2:8.39-11 libpcre3-dev_2:8.39-11 libpcre32-3_2:8.39-11 libpcrecpp0v5_2:8.39-11 libperl5.28_5.28.1-3 libpipeline1_1.5.0-2 libpixman-1-0_0.36.0-1 libpng-dev_1.6.36-2 libpng16-16_1.6.36-2 libprocps7_2:3.3.15-2ubuntu1 libpsl5_0.20.2-2 libquadmath0_8.2.0-13ubuntu1 libreadline-dev_7.0-5 libreadline7_7.0-5 libroken18-heimdal_7.5.0+dfsg-2.1 librtmp1_2.4+20151223.gitfa8646d.1-2 libsasl2-2_2.1.27~101-g0780600+dfsg-3ubuntu2 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3ubuntu2 libseccomp2_2.3.3-3ubuntu2 libselinux1_2.8-1build2 libsemanage-common_2.8-1build2 libsemanage1_2.8-1build2 libsepol1_2.8-1 libsigsegv2_2.12-2 libslang2_2.3.2-1ubuntu1 libsm6_2:1.2.2-1 libsmartcols1_2.32-0.1ubuntu2 libsqlite3-0_3.26.0+fossilbc891ac6b-1 libss2_1.44.5-1 libssl1.1_1.1.1a-1ubuntu2 libstdc++-8-dev_8.2.0-13ubuntu1 libstdc++6_8.2.0-13ubuntu1 libswitch-perl_2.17-2 libsystemd0_239-7ubuntu15 libtasn1-6_4.13-3 libtcl8.6_8.6.9+dfsg-1 libthai-data_0.1.28-1 libthai0_0.1.28-1 libtiff5_4.0.10-3 libtinfo6_6.1+20180210-4ubuntu1 libtk8.6_8.6.9-1 libtool_2.4.6-6 libtsan0_8.2.0-13ubuntu1 libubsan1_8.2.0-13ubuntu1 libuchardet0_0.0.6-3 libudev1_239-7ubuntu15 libunistring2_0.9.10-1ubuntu1 libusb-0.1-4_2:0.1.12-32 libuuid1_2.32-0.1ubuntu2 libwebp6_0.6.1-2 libwind0-heimdal_7.5.0+dfsg-2.1 libx11-6_2:1.6.7-1 libx11-data_2:1.6.7-1 libxau6_1:1.0.8-1 libxcb-render0_1.13.1-2 libxcb-shm0_1.13.1-2 libxcb1_1.13.1-2 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.3-1 libxft2_2.3.2-2 libxml2_2.9.4+dfsg1-7ubuntu3 libxmuu1_2:1.1.2-2 libxrender1_1:0.9.10-1 libxss1_1:1.2.3-1 libxt6_1:1.1.5-1 libzstd1_1.3.8+dfsg-3 linux-libc-dev_4.19.0-9.10 lockfile-progs_0.1.18 login_1:4.5-1ubuntu1 lsb-base_9.20170808ubuntu1 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.4-3 mawk_1.3.3-17ubuntu3 mount_2.32-0.1ubuntu2 multiarch-support_2.28-0ubuntu1 ncurses-base_6.1+20180210-4ubuntu1 ncurses-bin_6.1+20180210-4ubuntu1 openssl_1.1.1a-1ubuntu2 optipng_0.7.6-1.1 passwd_1:4.5-1ubuntu1 patch_2.7.6-3 perl_5.28.1-3 perl-base_5.28.1-3 perl-modules-5.28_5.28.1-3 pinentry-curses_1.1.0-1build2 pkg-config_0.29.1-0ubuntu2 pkgbinarymangler_143 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu1 r-base-core_3.5.2-1 r-base-dev_3.5.2-1 r-bioc-biocgenerics_0.28.0-2 r-bioc-biocparallel_1.16.5-1 r-bioc-iranges_2.16.0-1 r-bioc-s4vectors_0.20.1-2 r-cran-formatr_1.5-3 r-cran-futile.logger_1.4.3-3 r-cran-futile.options_1.0.1-2 r-cran-lambda.r_1.2.3-2 r-cran-matrixstats_0.54.0-1 r-cran-snow_1:0.4.3-1 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-delayedarray-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 systemd_239-7ubuntu15 systemd-sysv_239-7ubuntu15 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu2 tar_1.30+dfsg-4 tzdata_2018i-1 ubuntu-keyring_2018.09.18.1 ucf_3.0038+nmu1 unzip_6.0-21ubuntu1 util-linux_2.32-0.1ubuntu2 x11-common_1:7.7+19ubuntu8 xauth_1:1.0.10-1 xdg-utils_1.1.3-1ubuntu2 xz-utils_5.2.2-1.3 zip_3.0-11build1 zlib1g_1:1.2.11.dfsg-0ubuntu2 zlib1g-dev_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Sun Jan 6 11:47:17 2019 UTC gpgv: using RSA key 9A3C07BD06DE2F416E813A5D612EF1613E050F54 gpgv: issuer "daissi@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./r-bioc-delayedarray_0.8.0+dfsg-2.dsc dpkg-source: info: extracting r-bioc-delayedarray in r-bioc-delayedarray-0.8.0+dfsg dpkg-source: info: unpacking r-bioc-delayedarray_0.8.0+dfsg.orig.tar.xz dpkg-source: info: unpacking r-bioc-delayedarray_0.8.0+dfsg-2.debian.tar.xz Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-16240605 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-16240605 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-16240605 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package r-bioc-delayedarray dpkg-buildpackage: info: source version 0.8.0+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules build make: 'build' is up to date. fakeroot debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_auto_install -O--buildsystem=R I: R packages needed for DEP8: runit, biocgenerics, genefilter I: R Package: DelayedArray Version: 0.8.0 I: Building using R version 3.5.2-1 I: R API version: r-api-3.5 I: Using built-time from d/changelog: Sun, 06 Jan 2019 12:38:15 +0100 mkdir -p /<>/r-bioc-delayedarray-0.8.0\+dfsg/debian/r-bioc-delayedarray/usr/lib/R/site-library R CMD INSTALL -l /<>/r-bioc-delayedarray-0.8.0\+dfsg/debian/r-bioc-delayedarray/usr/lib/R/site-library --clean . "--built-timestamp='Sun, 06 Jan 2019 12:38:15 +0100'" * installing *source* package ‘DelayedArray’ ... ** libs make[1]: Entering directory '/<>/r-bioc-delayedarray-0.8.0+dfsg/src' gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dytSiC/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c R_init_DelayedArray.c -o R_init_DelayedArray.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dytSiC/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c S4Vectors_stubs.c -o S4Vectors_stubs.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dytSiC/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c abind.c -o abind.o gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o DelayedArray.so R_init_DelayedArray.o S4Vectors_stubs.o abind.o -L/usr/lib/R/lib -lR make[1]: Leaving directory '/<>/r-bioc-delayedarray-0.8.0+dfsg/src' make[1]: Entering directory '/<>/r-bioc-delayedarray-0.8.0+dfsg/src' make[1]: Leaving directory '/<>/r-bioc-delayedarray-0.8.0+dfsg/src' installing to /<>/r-bioc-delayedarray-0.8.0+dfsg/debian/r-bioc-delayedarray/usr/lib/R/site-library/DelayedArray/libs ** R ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘aperm’ in package ‘DelayedArray’ in method for ‘coerce’ with signature ‘"dgCMatrix","SparseArraySeed"’: no definition for class “dgCMatrix” in method for ‘coerce’ with signature ‘"SparseArraySeed","dgCMatrix"’: no definition for class “dgCMatrix” in method for ‘coerce’ with signature ‘"SparseArraySeed","sparseMatrix"’: no definition for class “sparseMatrix” in method for ‘coerce’ with signature ‘"DelayedMatrix","dgCMatrix"’: no definition for class “dgCMatrix” in method for ‘coerce’ with signature ‘"DelayedMatrix","sparseMatrix"’: no definition for class “sparseMatrix” Creating a generic function for ‘sweep’ from package ‘base’ in package ‘DelayedArray’ Creating a new generic function for ‘apply’ in package ‘DelayedArray’ Creating a generic function for ‘dnorm’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘pnorm’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘qnorm’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘dbinom’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘pbinom’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘qbinom’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘dpois’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘ppois’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘qpois’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘dlogis’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘plogis’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘qlogis’ from package ‘stats’ in package ‘DelayedArray’ Creating a new generic function for ‘rowMaxs’ in package ‘DelayedArray’ Creating a new generic function for ‘colMaxs’ in package ‘DelayedArray’ Creating a new generic function for ‘rowMins’ in package ‘DelayedArray’ Creating a new generic function for ‘colMins’ in package ‘DelayedArray’ Creating a new generic function for ‘rowRanges’ in package ‘DelayedArray’ Creating a new generic function for ‘colRanges’ in package ‘DelayedArray’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (DelayedArray) W: Ignoring specified R dependency: R (>= 3.4) I: Using r-cran-matrixstats for Depends:matrixStats I: Using r-bioc-biocgenerics for Depends:BiocGenerics (>= 0.27.1) I: Using r-bioc-s4vectors for Depends:S4Vectors (>= 0.19.15) I: Using r-bioc-iranges for Depends:IRanges (>= 2.11.17) I: Using r-bioc-biocparallel for Depends:BiocParallel I: Using r-cran-runit for Recommends:runit I: Using r-bioc-biocgenerics for Recommends:biocgenerics I: Using r-bioc-genefilter for Recommends:genefilter I: Using r-cran-matrix for Suggests:Matrix W: Cannot find a debian package for Suggests:HDF5Array I: Using r-bioc-summarizedexperiment for Suggests:SummarizedExperiment W: Cannot find a debian package for Suggests:airway W: Cannot find a debian package for Suggests:pryr W: Cannot find a debian package for Suggests:DelayedMatrixStats I: Using r-cran-knitr for Suggests:knitr W: Cannot find a debian package for Suggests:BiocStyle I: BioConductor API version: r-api-bioc-3.8 Create lintian-override for package-contains-documentation-outside-usr-share-doc dh_installdocs -O--buildsystem=R dh_installchangelogs -O--buildsystem=R dh_installinit -O--buildsystem=R dh_lintian -O--buildsystem=R dh_perl -O--buildsystem=R dh_link -O--buildsystem=R dh_strip_nondeterminism -O--buildsystem=R dh_compress -O--buildsystem=R dh_fixperms -O--buildsystem=R dh_missing -O--buildsystem=R dh_strip -O--buildsystem=R dh_makeshlibs -O--buildsystem=R dh_shlibdeps -O--buildsystem=R dh_installdeb -O--buildsystem=R dh_gencontrol -O--buildsystem=R dh_md5sums -O--buildsystem=R dh_builddeb -O--buildsystem=R INFO: pkgstriptranslations version 143 INFO: pkgstriptranslations version 143 pkgstriptranslations: processing r-bioc-delayedarray-dbgsym (in debian/.debhelper/r-bioc-delayedarray/dbgsym-root); do_strip: , oemstrip: pkgstriptranslations: processing r-bioc-delayedarray (in debian/r-bioc-delayedarray); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/r-bioc-delayedarray/dbgsym-root/DEBIAN/control, package r-bioc-delayedarray-dbgsym, directory debian/.debhelper/r-bioc-delayedarray/dbgsym-root dpkg-deb: building package 'r-bioc-delayedarray-dbgsym' in 'debian/.debhelper/scratch-space/build-r-bioc-delayedarray/r-bioc-delayedarray-dbgsym_0.8.0+dfsg-2_amd64.deb'. pkgstripfiles: processing control file: debian/r-bioc-delayedarray/DEBIAN/control, package r-bioc-delayedarray, directory debian/r-bioc-delayedarray Renaming r-bioc-delayedarray-dbgsym_0.8.0+dfsg-2_amd64.deb to r-bioc-delayedarray-dbgsym_0.8.0+dfsg-2_amd64.ddeb pkgstripfiles: Truncating usr/share/doc/r-bioc-delayedarray/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package r-bioc-delayedarray ... pkgstripfiles: No PNG files. dpkg-deb: building package 'r-bioc-delayedarray' in '../r-bioc-delayedarray_0.8.0+dfsg-2_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary -mLaunchpad Build Daemon >../r-bioc-delayedarray_0.8.0+dfsg-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20190106-1712 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ r-bioc-delayedarray_0.8.0+dfsg-2_amd64.changes: ----------------------------------------------- Format: 1.8 Date: Sun, 06 Jan 2019 12:38:15 +0100 Source: r-bioc-delayedarray Binary: r-bioc-delayedarray Architecture: amd64 Version: 0.8.0+dfsg-2 Distribution: disco-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Dylan Aïssi Description: r-bioc-delayedarray - BioConductor delayed operations on array-like objects Changes: r-bioc-delayedarray (0.8.0+dfsg-2) unstable; urgency=medium . * Team upload. * dh-update-R to update Build-Depends Remove useless Build-Depends: libgdal-dev * Add r-bioc-biocparallel (>= 1.16.5) to build-dep to avoid FTBFS on some uncommon architectures. Checksums-Sha1: 7a7a33c161e869e5ea1ddd122b4bdd6e6f046038 27680 r-bioc-delayedarray-dbgsym_0.8.0+dfsg-2_amd64.ddeb 1331c3430eac1c3fd0feba65aa468007b9711a67 8953 r-bioc-delayedarray_0.8.0+dfsg-2_amd64.buildinfo b888c8f3603fd84ad31540f9b629e30b70950539 1286264 r-bioc-delayedarray_0.8.0+dfsg-2_amd64.deb Checksums-Sha256: a61b22a91859f3b426814ef5fb889dc5588d2dc151406de87304e9c58ffb31cd 27680 r-bioc-delayedarray-dbgsym_0.8.0+dfsg-2_amd64.ddeb 58310b09c08b53e6ee0d9be82e2d78f1351ba913cb75a3728269a7dc76f4e7e2 8953 r-bioc-delayedarray_0.8.0+dfsg-2_amd64.buildinfo 5c69eb363470152218fe0d55ce3563370545ee57fae25c22432a3913ad84d184 1286264 r-bioc-delayedarray_0.8.0+dfsg-2_amd64.deb Files: 682662cd063c7080eab1c97e48c1fc12 27680 debug optional r-bioc-delayedarray-dbgsym_0.8.0+dfsg-2_amd64.ddeb 3589a27f566f37d965d7c2de0633b694 8953 gnu-r optional r-bioc-delayedarray_0.8.0+dfsg-2_amd64.buildinfo ab1987256caa0e79a1ae04a9ffa87bac 1286264 gnu-r optional r-bioc-delayedarray_0.8.0+dfsg-2_amd64.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ r-bioc-delayedarray_0.8.0+dfsg-2_amd64.deb ------------------------------------------ new debian package, version 2.0. size 1286264 bytes: control archive=2172 bytes. 1228 bytes, 21 lines control 3879 bytes, 42 lines md5sums Package: r-bioc-delayedarray Version: 0.8.0+dfsg-2 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian R Packages Maintainers Installed-Size: 1945 Depends: r-base-core (>= 3.5.2-1), r-api-3.5, r-api-bioc-3.8, r-cran-matrixstats, r-bioc-biocgenerics (>= 0.27.1), r-bioc-s4vectors (>= 0.19.15), r-bioc-iranges (>= 2.11.17), r-bioc-biocparallel, libc6 (>= 2.4) Recommends: r-cran-runit, r-bioc-genefilter Suggests: r-cran-matrix, r-bioc-summarizedexperiment, r-cran-knitr Section: gnu-r Priority: optional Homepage: https://bioconductor.org/packages/DelayedArray/ Description: BioConductor delayed operations on array-like objects Wrapping an array-like object (typically an on-disk object) in a DelayedArray object allows one to perform common array operations on it without loading the object in memory. In order to reduce memory usage and optimize performance, operations on the object are either delayed or executed using a block processing mechanism. Note that this also works on in-memory array-like objects like DataFrame objects (typically with Rle columns), Matrix objects, and ordinary arrays and data frames. drwxr-xr-x root/root 0 2019-01-06 11:38 ./ drwxr-xr-x root/root 0 2019-01-06 11:38 ./usr/ drwxr-xr-x root/root 0 2019-01-06 11:38 ./usr/lib/ drwxr-xr-x root/root 0 2019-01-06 11:38 ./usr/lib/R/ drwxr-xr-x root/root 0 2019-01-06 11:38 ./usr/lib/R/site-library/ drwxr-xr-x root/root 0 2019-01-06 11:38 ./usr/lib/R/site-library/DelayedArray/ -rw-r--r-- root/root 2079 2019-01-06 11:38 ./usr/lib/R/site-library/DelayedArray/DESCRIPTION -rw-r--r-- root/root 1063 2019-01-06 11:38 ./usr/lib/R/site-library/DelayedArray/INDEX drwxr-xr-x root/root 0 2019-01-06 11:38 ./usr/lib/R/site-library/DelayedArray/Meta/ -rw-r--r-- root/root 3605 2019-01-06 11:38 ./usr/lib/R/site-library/DelayedArray/Meta/Rd.rds -rw-r--r-- root/root 113 2019-01-06 11:38 ./usr/lib/R/site-library/DelayedArray/Meta/features.rds -rw-r--r-- root/root 3773 2019-01-06 11:38 ./usr/lib/R/site-library/DelayedArray/Meta/hsearch.rds -rw-r--r-- root/root 3217 2019-01-06 11:38 ./usr/lib/R/site-library/DelayedArray/Meta/links.rds -rw-r--r-- root/root 1730 2019-01-06 11:38 ./usr/lib/R/site-library/DelayedArray/Meta/nsInfo.rds -rw-r--r-- root/root 1660 2019-01-06 11:38 ./usr/lib/R/site-library/DelayedArray/Meta/package.rds -rw-r--r-- root/root 333 2019-01-06 11:38 ./usr/lib/R/site-library/DelayedArray/Meta/vignette.rds -rw-r--r-- root/root 7581 2019-01-06 11:38 ./usr/lib/R/site-library/DelayedArray/NAMESPACE -rw-r--r-- root/root 6467 2019-01-06 11:38 ./usr/lib/R/site-library/DelayedArray/NEWS drwxr-xr-x root/root 0 2019-01-06 11:38 ./usr/lib/R/site-library/DelayedArray/R/ -rw-r--r-- root/root 1056 2019-01-06 11:38 ./usr/lib/R/site-library/DelayedArray/R/DelayedArray -rw-r--r-- root/root 1373031 2019-01-06 11:38 ./usr/lib/R/site-library/DelayedArray/R/DelayedArray.rdb -rw-r--r-- root/root 13245 2019-01-06 11:38 ./usr/lib/R/site-library/DelayedArray/R/DelayedArray.rdx drwxr-xr-x root/root 0 2019-01-06 11:38 ./usr/lib/R/site-library/DelayedArray/doc/ -rw-r--r-- root/root 3303 2019-01-06 11:38 ./usr/lib/R/site-library/DelayedArray/doc/01-Working_with_large_arrays.R -rw-r--r-- root/root 18782 2019-01-06 11:38 ./usr/lib/R/site-library/DelayedArray/doc/01-Working_with_large_arrays.Rnw -rw-r--r-- root/root 183309 2019-01-06 11:38 ./usr/lib/R/site-library/DelayedArray/doc/01-Working_with_large_arrays.pdf -rw-r--r-- root/root 11503 2019-01-06 11:38 ./usr/lib/R/site-library/DelayedArray/doc/02-Implementing_a_backend.Rmd -rw-r--r-- root/root 1991 2019-01-06 11:38 ./usr/lib/R/site-library/DelayedArray/doc/index.html drwxr-xr-x root/root 0 2019-01-06 11:38 ./usr/lib/R/site-library/DelayedArray/help/ -rw-r--r-- root/root 19353 2019-01-06 11:38 ./usr/lib/R/site-library/DelayedArray/help/AnIndex -rw-r--r-- root/root 115246 2019-01-06 11:38 ./usr/lib/R/site-library/DelayedArray/help/DelayedArray.rdb -rw-r--r-- root/root 661 2019-01-06 11:38 ./usr/lib/R/site-library/DelayedArray/help/DelayedArray.rdx -rw-r--r-- root/root 3437 2019-01-06 11:38 ./usr/lib/R/site-library/DelayedArray/help/aliases.rds -rw-r--r-- root/root 347 2019-01-06 11:38 ./usr/lib/R/site-library/DelayedArray/help/paths.rds drwxr-xr-x root/root 0 2019-01-06 11:38 ./usr/lib/R/site-library/DelayedArray/html/ -rw-r--r-- root/root 45760 2019-01-06 11:38 ./usr/lib/R/site-library/DelayedArray/html/00Index.html -rw-r--r-- root/root 1335 2019-01-06 11:38 ./usr/lib/R/site-library/DelayedArray/html/R.css drwxr-xr-x root/root 0 2019-01-06 11:38 ./usr/lib/R/site-library/DelayedArray/libs/ -rw-r--r-- root/root 34968 2019-01-06 11:38 ./usr/lib/R/site-library/DelayedArray/libs/DelayedArray.so drwxr-xr-x root/root 0 2019-01-06 11:38 ./usr/lib/R/site-library/DelayedArray/unitTests/ -rw-r--r-- root/root 9501 2019-01-06 11:38 ./usr/lib/R/site-library/DelayedArray/unitTests/test_DelayedArray-class.R -rw-r--r-- root/root 10134 2019-01-06 11:38 ./usr/lib/R/site-library/DelayedArray/unitTests/test_DelayedArray-utils.R -rw-r--r-- root/root 2115 2019-01-06 11:38 ./usr/lib/R/site-library/DelayedArray/unitTests/test_DelayedMatrix-stats.R -rw-r--r-- root/root 4026 2019-01-06 11:38 ./usr/lib/R/site-library/DelayedArray/unitTests/test_DelayedMatrix-utils.R -rw-r--r-- root/root 32297 2019-01-06 11:38 ./usr/lib/R/site-library/DelayedArray/unitTests/test_DelayedOp-class.R -rw-r--r-- root/root 1718 2019-01-06 11:38 ./usr/lib/R/site-library/DelayedArray/unitTests/test_RleArray-class.R -rw-r--r-- root/root 717 2019-01-06 11:38 ./usr/lib/R/site-library/DelayedArray/unitTests/test_SparseArraySeed-class.R -rw-r--r-- root/root 980 2019-01-06 11:38 ./usr/lib/R/site-library/DelayedArray/unitTests/test_aperm2.R -rw-r--r-- root/root 5435 2019-01-06 11:38 ./usr/lib/R/site-library/DelayedArray/unitTests/test_bind-arrays.R -rw-r--r-- root/root 2512 2019-01-06 11:38 ./usr/lib/R/site-library/DelayedArray/unitTests/test_block_processing.R -rw-r--r-- root/root 7114 2019-01-06 11:38 ./usr/lib/R/site-library/DelayedArray/unitTests/test_cbind-methods.R -rw-r--r-- root/root 7711 2019-01-06 11:38 ./usr/lib/R/site-library/DelayedArray/unitTests/test_makeCappedVolumeBox.R drwxr-xr-x root/root 0 2019-01-06 11:38 ./usr/share/ drwxr-xr-x root/root 0 2019-01-06 11:38 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-01-06 11:38 ./usr/share/doc/r-bioc-delayedarray/ -rw-r--r-- root/root 660 2019-01-06 11:38 ./usr/share/doc/r-bioc-delayedarray/changelog.Debian.gz -rw-r--r-- root/root 5324 2019-01-06 11:38 ./usr/share/doc/r-bioc-delayedarray/copyright drwxr-xr-x root/root 0 2019-01-06 11:38 ./usr/share/lintian/ drwxr-xr-x root/root 0 2019-01-06 11:38 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 158 2019-01-06 11:38 ./usr/share/lintian/overrides/r-bioc-delayedarray +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build-Space: 4520 Build-Time: 40 Distribution: disco-proposed Host Architecture: amd64 Install-Time: 56 Job: r-bioc-delayedarray_0.8.0+dfsg-2.dsc Machine Architecture: amd64 Package: r-bioc-delayedarray Package-Time: 97 Source-Version: 0.8.0+dfsg-2 Space: 4520 Status: successful Version: 0.8.0+dfsg-2 -------------------------------------------------------------------------------- Finished at 20190106-1712 Build needed 00:01:37, 4520k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=disco --arch=amd64 PACKAGEBUILD-16240605 Scanning for processes to kill in build PACKAGEBUILD-16240605