r-bioc-dada2 1.34.0+dfsg-2 source package in Ubuntu
Changelog
r-bioc-dada2 (1.34.0+dfsg-2) unstable; urgency=medium * Team upload. * Upload to unstable. -- Michael R. Crusoe <email address hidden> Mon, 13 Jan 2025 21:01:26 +0100
Upload details
- Uploaded by:
- Debian R Packages Maintainers
- Uploaded to:
- Sid
- Original maintainer:
- Debian R Packages Maintainers
- Architectures:
- any-amd64
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section | |
|---|---|---|---|---|
| Plucky | release | universe | misc |
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| r-bioc-dada2_1.34.0+dfsg-2.dsc | 2.2 KiB | 37c3729c118a52d7e2b0619df3eed92be45e87ccd3caa3d4b10398550129a9ae |
| r-bioc-dada2_1.34.0+dfsg.orig.tar.xz | 2.1 MiB | 95783855bf21c47bf9f39872e7d748bc9b70a0b266cdf3d0e395684e541586af |
| r-bioc-dada2_1.34.0+dfsg-2.debian.tar.xz | 3.7 KiB | 270ecdb001530d4efe76586ab8e00214fe33b000ba0697ac111934b315e6d390 |
Available diffs
- diff from 1.32.0+dfsg-1 to 1.34.0+dfsg-2 (4.7 KiB)
No changes file available.
Binary packages built by this source
- r-bioc-dada2: sample inference from amplicon sequencing data
The dada2 package contributes to software workflows to interpret
sequencing data from microbiota - the relative abundance of
bacterial and/or yeast, typically measured in the gut.
It infers exact amplicon sequence
variants (ASVs) from high-throughput amplicon sequencing data,
replacing the coarser and less accurate OTU clustering approach.
The dada2 pipeline takes as input demultiplexed fastq files, and
outputs the sequence variants and their sample-wise abundances
after removing substitution and chimera errors. Taxonomic
classification is available via a native implementation of the RDP
naive Bayesian classifier, and species-level assignment to 16S
rRNA gene fragments by exact matching.
- r-bioc-dada2-dbgsym: debug symbols for r-bioc-dada2
