r-bioc-dada2 1.30.0+dfsg-1 source package in Ubuntu
Changelog
r-bioc-dada2 (1.30.0+dfsg-1) unstable; urgency=medium * Team upload. * New upstream version -- Andreas Tille <email address hidden> Thu, 30 Nov 2023 20:00:03 +0100
Upload details
- Uploaded by:
- Debian R Packages Maintainers
- Uploaded to:
- Sid
- Original maintainer:
- Debian R Packages Maintainers
- Architectures:
- any-amd64
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section | |
|---|---|---|---|---|
| Oracular | release | universe | misc | |
| Noble | release | universe | misc |
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| r-bioc-dada2_1.30.0+dfsg-1.dsc | 2.2 KiB | e894981de3638e17607d6e3b510444e8be6afaea145d95b252fa94b3410c30ab |
| r-bioc-dada2_1.30.0+dfsg.orig.tar.xz | 2.1 MiB | c346424e1ea4bc0bb1ad308d7ea9b89f05fe796c21d140dbf6264fd8e5f2aa20 |
| r-bioc-dada2_1.30.0+dfsg-1.debian.tar.xz | 3.6 KiB | 4a36d91c217bfcfc9c15b98fb1067448f709cc07b5b7248f7ef2b01722974d1e |
Available diffs
- diff from 1.28.0+dfsg-1 to 1.30.0+dfsg-1 (980 bytes)
No changes file available.
Binary packages built by this source
- r-bioc-dada2: sample inference from amplicon sequencing data
The dada2 package contributes to software workflows to interpret
sequencing data from microbiota - the relative abundance of
bacterial and/or yeast, typically measured in the gut.
It infers exact amplicon sequence
variants (ASVs) from high-throughput amplicon sequencing data,
replacing the coarser and less accurate OTU clustering approach.
The dada2 pipeline takes as input demultiplexed fastq files, and
outputs the sequence variants and their sample-wise abundances
after removing substitution and chimera errors. Taxonomic
classification is available via a native implementation of the RDP
naive Bayesian classifier, and species-level assignment to 16S
rRNA gene fragments by exact matching.
- r-bioc-dada2-dbgsym: debug symbols for r-bioc-dada2
