r-bioc-dada2 1.22.0+dfsg-1build2 source package in Ubuntu
Changelog
r-bioc-dada2 (1.22.0+dfsg-1build2) jammy; urgency=medium * No-change rebuild with current r-cran-rcppparallel. -- Matthias Klose <email address hidden> Sun, 13 Mar 2022 05:51:59 +0100
Upload details
- Uploaded by:
- Matthias Klose
- Uploaded to:
- Jammy
- Original maintainer:
- Debian R Packages Maintainers
- Architectures:
- any-amd64
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section | |
|---|---|---|---|---|
| Jammy | release | universe | misc |
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| r-bioc-dada2_1.22.0+dfsg.orig.tar.xz | 2.1 MiB | 09dcb2b6f2e576ed0120583866756fa8d21f4d51850be0d1c36bbc23360252f4 |
| r-bioc-dada2_1.22.0+dfsg-1build2.debian.tar.xz | 3.4 KiB | 1db95395885c3005c74bd3f15087ec443642447c16ef0473b3cdab5a0c86dd07 |
| r-bioc-dada2_1.22.0+dfsg-1build2.dsc | 2.2 KiB | 2abc4fb44000b052731da8ef131ac931c9e20b950d8e7978e412e12d3a5a8472 |
Available diffs
Binary packages built by this source
- r-bioc-dada2: sample inference from amplicon sequencing data
The dada2 package contributes to software workflows to interpret
sequencing data from microbiota - the relative abundance of
bacterial and/or yeast, typically measured in the gut.
It infers exact amplicon sequence
variants (ASVs) from high-throughput amplicon sequencing data,
replacing the coarser and less accurate OTU clustering approach.
The dada2 pipeline takes as input demultiplexed fastq files, and
outputs the sequence variants and their sample-wise abundances
after removing substitution and chimera errors. Taxonomic
classification is available via a native implementation of the RDP
naive Bayesian classifier, and species-level assignment to 16S
rRNA gene fragments by exact matching.
- r-bioc-dada2-dbgsym: debug symbols for r-bioc-dada2
