Ubuntu
quicktree package

quicktree 2.5-6 source package in Ubuntu

Changelog

quicktree (2.5-6) unstable; urgency=medium

  * Team upload.
  * d/control: Update Standards-Version to 4.6.2
  * d/rules: Clean libquicktree.a (Closes: #1048270)
  * d/source/options: Ignore changes to source files
  * d/copyright: Update year for debian/* files to 2023
  * d/patches/fix_build_warnings.patch: Fix minor build warnings for
    incorrect format type and suggested parentheses
  * d/patches/add_CPPFLAGS.patch: Passes CPPFLAGS for hardening with
    D_FORTIFY_SOURCE

 -- Lance Lin <email address hidden>  Tue, 03 Oct 2023 19:27:53 +0700

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Oracular release universe misc
Noble release universe misc

Downloads

File Size SHA-256 Checksum
quicktree_2.5-6.dsc 2.0 KiB 46d139d8baba230c20198b63d50f292f4f0cb0dbcdabfa3055bbbd0025578cbd
quicktree_2.5.orig.tar.gz 38.9 KiB 731aa845ce3f1f0645bd0df2b54df75f78fce065d6a3ddc47fedf4bdcb11c248
quicktree_2.5-6.debian.tar.xz 5.7 KiB ac8993853ea900963d4c854969e7d250b7f637029eada0b93a9c6aff197e01a4

Available diffs

No changes file available.

Binary packages built by this source

libquicktree-dev: Neighbor-Joining algorithm for phylogenies (development)

 QuickTree is an efficient implementation of the Neighbor-Joining
 algorithm (PMID: 3447015), capable of reconstructing phylogenies from
 huge alignments in time less than the age of the universe.
 .
 QuickTree accepts both distance matrix and multiple-sequence-aligment
 inputs. The former should be in PHYLIP format. The latter should be
 in Stockholm format, which is the native alignment format for the Pfam
 database. Alignments in various formats can be converted to Stockholm
 format with the sreformat program, which is part of the HMMer package
 (hmmer.org).
 .
 The tress are written to stdout, in the Newick/New-Hampshire format
 use by PHYLIP and many other programs
 .
 This package contains some header files from quicktree that are used
 by other packages.

quicktree: Neighbor-Joining algorithm for phylogenies

 QuickTree is an efficient implementation of the Neighbor-Joining
 algorithm (PMID: 3447015), capable of reconstructing phylogenies from
 huge alignments in time less than the age of the universe.
 .
 QuickTree accepts both distance matrix and multiple-sequence-aligment
 inputs. The former should be in PHYLIP format. The latter should be
 in Stockholm format, which is the native alignment format for the Pfam
 database. Alignments in various formats can be converted to Stockholm
 format with the sreformat program, which is part of the HMMer package
 (hmmer.org).
 .
 The tress are written to stdout, in the Newick/New-Hampshire format
 use by PHYLIP and many other programs

quicktree-dbgsym: debug symbols for quicktree