qiime 1.3.0-3 source package in Ubuntu

Changelog

qiime (1.3.0-3) unstable; urgency=low


  [ Charles Plessy ]
  * renamed debian/upstream-metadata.yaml to debian/upstream

  [ Andreas Tille ]
  * Standards-Version: 3.9.3 (no changes needed)
  * debian/patches/ghc_7.4.2_compatibility.patch: Fix build problem based
    on illegal use of 'import System' (Thanks to Joachim Breitner
    <email address hidden>) for the patch
    Closes: #663889

 -- Andreas Tille <email address hidden>  Sat, 17 Mar 2012 19:19:38 +0100

Upload details

Uploaded by:
Debian Med on 2012-03-20
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any all
Section:
science
Urgency:
Low Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Precise release on 2012-04-22 universe science

Downloads

File Size SHA-256 Checksum
qiime_1.3.0-3.dsc 1.5 KiB 960ea1d441282e6c67615544a0b3249386cd39c11c9125702af51ab8879bf3ca
qiime_1.3.0.orig.tar.gz 7.5 MiB 4cad294f4e50c33c919ee862c8494cdf24a920aa755b3288b07d3a50bbf38fb5
qiime_1.3.0-3.debian.tar.gz 10.7 KiB 19341b648c309b760d89d2be2c5ac2480c034fdb1ae5fcff54e71788cd33c477

Available diffs

No changes file available.

Binary packages built by this source

qiime: Quantitative Insights Into Microbial Ecology

 QIIME (canonically pronounced ‘Chime’) is a pipeline for performing
 microbial community analysis that integrates many third party tools which
 have become standard in the field. A standard QIIME analysis begins with
 sequence data from one or more sequencing platforms, including
  * Sanger,
  * Roche/454, and
  * Illumina GAIIx.
 With all the underlying tools installed,
 of which not all are yet available in Debian (or any other Linux
 distribution), QIIME can perform
  * library de-multiplexing and quality filtering;
  * denoising with PyroNoise;
  * OTU and representative set picking with uclust, cdhit, mothur, BLAST,
    or other tools;
  * taxonomy assignment with BLAST or the RDP classifier;
  * sequence alignment with PyNAST, muscle, infernal, or other tools;
  * phylogeny reconstruction with FastTree, raxml, clearcut, or other tools;
  * alpha diversity and rarefaction, including visualization of results,
    using over 20 metrics including Phylogenetic Diversity, chao1, and
    observed species;
  * beta diversity and rarefaction, including visualization of results,
    using over 25 metrics including weighted and unweighted UniFrac,
    Euclidean distance, and Bray-Curtis;
  * summarization and visualization of taxonomic composition of samples
    using pie charts and histograms
 and many other features.
 .
 QIIME includes parallelization capabilities for many of the
 computationally intensive steps. By default, these are configured to
 utilize a mutli-core environment, and are easily configured to run in
 a cluster environment. QIIME is built in Python using the open-source
 PyCogent toolkit. It makes extensive use of unit tests, and is highly
 modular to facilitate custom analyses.

qiime-doc: No summary available for qiime-doc in ubuntu quantal.

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