RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux z13-026 4.4.0-87-generic #110-Ubuntu SMP Tue Jul 18 12:56:43 UTC 2017 s390x Buildd toolchain package versions: launchpad-buildd_147 python-lpbuildd_147 sbuild_0.67.0-2ubuntu7 dpkg-dev_1.18.4ubuntu1.2 python-debian_0.1.27ubuntu2 qemu-user-static_1:2.5+dfsg-5ubuntu10.14. Syncing the system clock with the buildd NTP service... 5 Aug 16:59:04 ntpdate[38687]: adjust time server 10.211.37.1 offset 0.000469 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-13203696', '/home/buildd/filecache-default/6fa5c2199508da5ee864769667103e5baa50a34d'] Unpacking chroot for build PACKAGEBUILD-13203696 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-13203696'] Mounting chroot for build PACKAGEBUILD-13203696 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-13203696', 'deb http://ftpmaster.internal/ubuntu artful main universe', 'deb http://ftpmaster.internal/ubuntu artful-security main universe', 'deb http://ftpmaster.internal/ubuntu artful-updates main universe', 'deb http://ftpmaster.internal/ubuntu artful-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-13203696 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-13203696', 's390x'] Updating debian chroot for build PACKAGEBUILD-13203696 Get:1 http://ftpmaster.internal/ubuntu artful InRelease [237 kB] Get:2 http://ftpmaster.internal/ubuntu artful-security InRelease [65.5 kB] Get:3 http://ftpmaster.internal/ubuntu artful-updates InRelease [65.5 kB] Get:4 http://ftpmaster.internal/ubuntu artful-proposed InRelease [235 kB] Get:5 http://ftpmaster.internal/ubuntu artful/main s390x Packages [1080 kB] Get:6 http://ftpmaster.internal/ubuntu artful/main Translation-en [559 kB] Get:7 http://ftpmaster.internal/ubuntu artful/universe s390x Packages [7961 kB] Get:8 http://ftpmaster.internal/ubuntu artful/universe Translation-en [4779 kB] Get:9 http://ftpmaster.internal/ubuntu artful-proposed/main s390x Packages [155 kB] Get:10 http://ftpmaster.internal/ubuntu artful-proposed/main Translation-en [94.7 kB] Get:11 http://ftpmaster.internal/ubuntu artful-proposed/universe s390x Packages [526 kB] Get:12 http://ftpmaster.internal/ubuntu artful-proposed/universe Translation-en [292 kB] Fetched 16.0 MB in 7s (2078 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: g++-6 libperl5.24 libstdc++-6-dev perl-modules-5.24 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: cpp-7 g++-7 gcc-7 gcc-7-base libgcc-7-dev libperl5.26 libstdc++-7-dev perl-modules-5.26 The following packages will be upgraded: advancecomp apt apt-transport-https base-files bash binutils bsdutils ca-certificates cpp cpp-6 debconf debianutils diffutils dmsetup dpkg dpkg-dev e2fslibs e2fsprogs findutils g++ g++-6 gcc gcc-6 gcc-6-base grep init init-system-helpers libapparmor1 libapt-pkg5.0 libasn1-8-heimdal libatomic1 libaudit-common libaudit1 libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcc1-0 libcomerr2 libdb5.3 libdevmapper1.02.1 libdpkg-perl libfdisk1 libgcc-6-dev libgcc1 libgcrypt20 libgnutls30 libgomp1 libgpg-error0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libidn2-0 libip4tc0 libitm1 libk5crypto3 libkmod2 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common liblzma5 libmount1 libnpth0 libp11-kit0 libpcre3 libperl5.24 libpng16-16 libpsl5 libroken18-heimdal libselinux1 libsemanage-common libsemanage1 libsmartcols1 libsqlite3-0 libss2 libssl1.0.0 libstdc++-6-dev libstdc++6 libsystemd0 libtasn1-6 libudev1 libusb-0.1-4 libuuid1 libwind0-heimdal linux-libc-dev login mount multiarch-support openssl passwd perl perl-base perl-modules-5.24 sensible-utils systemd systemd-sysv tar tzdata util-linux xz-utils 107 upgraded, 8 newly installed, 0 to remove and 0 not upgraded. Need to get 147 MB of archives. After this operation, 463 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu artful/main s390x debconf all 1.5.63 [136 kB] Get:2 http://ftpmaster.internal/ubuntu artful-proposed/main s390x perl s390x 5.26.0-5 [205 kB] Get:3 http://ftpmaster.internal/ubuntu artful-proposed/main s390x perl-modules-5.26 all 5.26.0-5 [2762 kB] Get:4 http://ftpmaster.internal/ubuntu artful/main s390x libperl5.24 s390x 5.24.1-7ubuntu1 [3311 kB] Get:5 http://ftpmaster.internal/ubuntu artful-proposed/main s390x libperl5.26 s390x 5.26.0-5 [3380 kB] Get:6 http://ftpmaster.internal/ubuntu artful-proposed/main s390x perl-base s390x 5.26.0-5 [1308 kB] Get:7 http://ftpmaster.internal/ubuntu artful/main s390x perl-modules-5.24 all 5.24.1-7ubuntu1 [2664 kB] Get:8 http://ftpmaster.internal/ubuntu artful/main s390x libc6-dev s390x 2.24-12ubuntu1 [1984 kB] Get:9 http://ftpmaster.internal/ubuntu artful/main s390x libc-dev-bin s390x 2.24-12ubuntu1 [62.4 kB] Get:10 http://ftpmaster.internal/ubuntu artful-proposed/main s390x linux-libc-dev s390x 4.11.0-13.19 [924 kB] Get:11 http://ftpmaster.internal/ubuntu artful-proposed/main s390x gcc-7-base s390x 7.1.0-12ubuntu1 [18.2 kB] Get:12 http://ftpmaster.internal/ubuntu artful-proposed/main s390x libgcc1 s390x 1:7.1.0-12ubuntu1 [25.2 kB] Get:13 http://ftpmaster.internal/ubuntu artful/main s390x libc6 s390x 2.24-12ubuntu1 [2305 kB] Get:14 http://ftpmaster.internal/ubuntu artful/main s390x libdb5.3 s390x 5.3.28-13 [609 kB] Get:15 http://ftpmaster.internal/ubuntu artful-proposed/main s390x init-system-helpers all 1.49 [37.0 kB] Get:16 http://ftpmaster.internal/ubuntu artful/main s390x base-files s390x 9.6ubuntu101 [59.1 kB] Get:17 http://ftpmaster.internal/ubuntu artful/main s390x sensible-utils all 0.0.9+nmu1 [10.2 kB] Get:18 http://ftpmaster.internal/ubuntu artful/main s390x debianutils s390x 4.8.1.1 [85.8 kB] Get:19 http://ftpmaster.internal/ubuntu artful/main s390x bash s390x 4.4-5ubuntu1 [594 kB] Get:20 http://ftpmaster.internal/ubuntu artful-proposed/main s390x bsdutils s390x 1:2.30.1-0ubuntu2 [58.0 kB] Get:21 http://ftpmaster.internal/ubuntu artful-proposed/main s390x diffutils s390x 1:3.6-1 [164 kB] Get:22 http://ftpmaster.internal/ubuntu artful/main s390x tar s390x 1.29b-2 [222 kB] Get:23 http://ftpmaster.internal/ubuntu artful/main s390x dpkg s390x 1.18.24ubuntu1 [1121 kB] Get:24 http://ftpmaster.internal/ubuntu artful-proposed/main s390x e2fslibs s390x 1.43.5-1 [153 kB] Get:25 http://ftpmaster.internal/ubuntu artful-proposed/main s390x e2fsprogs s390x 1.43.5-1 [475 kB] Get:26 http://ftpmaster.internal/ubuntu artful-proposed/main s390x findutils s390x 4.6.0+git+20170729-2 [286 kB] Get:27 http://ftpmaster.internal/ubuntu artful/main s390x grep s390x 3.1-2 [152 kB] Get:28 http://ftpmaster.internal/ubuntu artful/main s390x login s390x 1:4.2-3.2ubuntu2 [302 kB] Get:29 http://ftpmaster.internal/ubuntu artful-proposed/main s390x libuuid1 s390x 2.30.1-0ubuntu2 [14.5 kB] Get:30 http://ftpmaster.internal/ubuntu artful-proposed/main s390x libblkid1 s390x 2.30.1-0ubuntu2 [112 kB] Get:31 http://ftpmaster.internal/ubuntu artful/main s390x libpcre3 s390x 2:8.39-4 [154 kB] Get:32 http://ftpmaster.internal/ubuntu artful-proposed/main s390x libselinux1 s390x 2.6-3build2 [63.6 kB] Get:33 http://ftpmaster.internal/ubuntu artful-proposed/main s390x libmount1 s390x 2.30.1-0ubuntu2 [122 kB] Get:34 http://ftpmaster.internal/ubuntu artful-proposed/main s390x libfdisk1 s390x 2.30.1-0ubuntu2 [145 kB] Get:35 http://ftpmaster.internal/ubuntu artful-proposed/main s390x libsmartcols1 s390x 2.30.1-0ubuntu2 [74.8 kB] Get:36 http://ftpmaster.internal/ubuntu artful-proposed/main s390x util-linux s390x 2.30.1-0ubuntu2 [907 kB] Get:37 http://ftpmaster.internal/ubuntu artful-proposed/main s390x mount s390x 2.30.1-0ubuntu2 [125 kB] Get:38 http://ftpmaster.internal/ubuntu artful/main s390x libc-bin s390x 2.24-12ubuntu1 [552 kB] Get:39 http://ftpmaster.internal/ubuntu artful-proposed/main s390x liblzma5 s390x 5.2.2-1.3 [90.6 kB] Get:40 http://ftpmaster.internal/ubuntu artful-proposed/main s390x libstdc++6 s390x 7.1.0-12ubuntu1 [407 kB] Get:41 http://ftpmaster.internal/ubuntu artful/main s390x libapt-pkg5.0 s390x 1.5~beta1 [732 kB] Get:42 http://ftpmaster.internal/ubuntu artful/main s390x apt-transport-https s390x 1.5~beta1 [32.1 kB] Get:43 http://ftpmaster.internal/ubuntu artful/main s390x libp11-kit0 s390x 0.23.7-3 [186 kB] Get:44 http://ftpmaster.internal/ubuntu artful/main s390x libtasn1-6 s390x 4.12-2.1 [33.8 kB] Get:45 http://ftpmaster.internal/ubuntu artful/main s390x libgnutls30 s390x 3.5.8-6ubuntu1 [591 kB] Get:46 http://ftpmaster.internal/ubuntu artful/main s390x apt s390x 1.5~beta1 [1076 kB] Get:47 http://ftpmaster.internal/ubuntu artful/main s390x libip4tc0 s390x 1.6.1-2ubuntu1 [19.4 kB] Get:48 http://ftpmaster.internal/ubuntu artful-proposed/main s390x libapparmor1 s390x 2.11.0-2ubuntu12 [28.4 kB] Get:49 http://ftpmaster.internal/ubuntu artful-proposed/main s390x libaudit-common all 1:2.7.7-1ubuntu2 [3998 B] Get:50 http://ftpmaster.internal/ubuntu artful/main s390x libcap-ng0 s390x 0.7.7-3build1 [10.5 kB] Get:51 http://ftpmaster.internal/ubuntu artful-proposed/main s390x libaudit1 s390x 1:2.7.7-1ubuntu2 [36.4 kB] Get:52 http://ftpmaster.internal/ubuntu artful/main s390x libgpg-error0 s390x 1.27-3 [35.2 kB] Get:53 http://ftpmaster.internal/ubuntu artful/main s390x libgcrypt20 s390x 1.7.8-2 [338 kB] Get:54 http://ftpmaster.internal/ubuntu artful/main s390x libkmod2 s390x 24-1ubuntu1 [36.7 kB] Get:55 http://ftpmaster.internal/ubuntu artful-proposed/main s390x systemd s390x 234-2ubuntu2 [2538 kB] Get:56 http://ftpmaster.internal/ubuntu artful-proposed/main s390x libsystemd0 s390x 234-2ubuntu2 [196 kB] Get:57 http://ftpmaster.internal/ubuntu artful-proposed/main s390x init s390x 1.49 [6040 B] Get:58 http://ftpmaster.internal/ubuntu artful-proposed/main s390x systemd-sysv s390x 234-2ubuntu2 [13.7 kB] Get:59 http://ftpmaster.internal/ubuntu artful-proposed/main s390x libcomerr2 s390x 1.43.5-1 [10.6 kB] Get:60 http://ftpmaster.internal/ubuntu artful/main s390x libsemanage-common all 2.6-2build1 [6738 B] Get:61 http://ftpmaster.internal/ubuntu artful/main s390x libsemanage1 s390x 2.6-2build1 [76.5 kB] Get:62 http://ftpmaster.internal/ubuntu artful-proposed/main s390x libss2 s390x 1.43.5-1 [10.6 kB] Get:63 http://ftpmaster.internal/ubuntu artful-proposed/main s390x libudev1 s390x 234-2ubuntu2 [52.6 kB] Get:64 http://ftpmaster.internal/ubuntu artful/main s390x passwd s390x 1:4.2-3.2ubuntu2 [770 kB] Get:65 http://ftpmaster.internal/ubuntu artful/main s390x libdevmapper1.02.1 s390x 2:1.02.137-2ubuntu2 [123 kB] Get:66 http://ftpmaster.internal/ubuntu artful/main s390x dmsetup s390x 2:1.02.137-2ubuntu2 [68.8 kB] Get:67 http://ftpmaster.internal/ubuntu artful/main s390x libroken18-heimdal s390x 7.4.0.dfsg.1-2 [39.2 kB] Get:68 http://ftpmaster.internal/ubuntu artful/main s390x libasn1-8-heimdal s390x 7.4.0.dfsg.1-2 [150 kB] Get:69 http://ftpmaster.internal/ubuntu artful/main s390x libheimbase1-heimdal s390x 7.4.0.dfsg.1-2 [27.5 kB] Get:70 http://ftpmaster.internal/ubuntu artful/main s390x libhcrypto4-heimdal s390x 7.4.0.dfsg.1-2 [83.1 kB] Get:71 http://ftpmaster.internal/ubuntu artful/main s390x libwind0-heimdal s390x 7.4.0.dfsg.1-2 [48.1 kB] Get:72 http://ftpmaster.internal/ubuntu artful/main s390x libhx509-5-heimdal s390x 7.4.0.dfsg.1-2 [99.6 kB] Get:73 http://ftpmaster.internal/ubuntu artful/main s390x libsqlite3-0 s390x 3.19.3-3 [463 kB] Get:74 http://ftpmaster.internal/ubuntu artful/main s390x libkrb5-26-heimdal s390x 7.4.0.dfsg.1-2 [191 kB] Get:75 http://ftpmaster.internal/ubuntu artful/main s390x libheimntlm0-heimdal s390x 7.4.0.dfsg.1-2 [14.5 kB] Get:76 http://ftpmaster.internal/ubuntu artful/main s390x libgssapi3-heimdal s390x 7.4.0.dfsg.1-2 [88.7 kB] Get:77 http://ftpmaster.internal/ubuntu artful-proposed/main s390x libldap-2.4-2 s390x 2.4.45+dfsg-1ubuntu1 [144 kB] Get:78 http://ftpmaster.internal/ubuntu artful-proposed/main s390x libldap-common all 2.4.45+dfsg-1ubuntu1 [16.6 kB] Get:79 http://ftpmaster.internal/ubuntu artful/main s390x libnpth0 s390x 1.5-2 [7448 B] Get:80 http://ftpmaster.internal/ubuntu artful/main s390x libssl1.0.0 s390x 1.0.2g-1ubuntu13 [773 kB] Get:81 http://ftpmaster.internal/ubuntu artful/main s390x multiarch-support s390x 2.24-12ubuntu1 [6836 B] Get:82 http://ftpmaster.internal/ubuntu artful/main s390x tzdata all 2017b-2 [203 kB] Get:83 http://ftpmaster.internal/ubuntu artful-proposed/main s390x xz-utils s390x 5.2.2-1.3 [82.1 kB] Get:84 http://ftpmaster.internal/ubuntu artful/main s390x openssl s390x 1.0.2g-1ubuntu13 [476 kB] Get:85 http://ftpmaster.internal/ubuntu artful/main s390x ca-certificates all 20161130+nmu1 [186 kB] Get:86 http://ftpmaster.internal/ubuntu artful/main s390x libgssapi-krb5-2 s390x 1.15.1-2 [109 kB] Get:87 http://ftpmaster.internal/ubuntu artful/main s390x libkrb5-3 s390x 1.15.1-2 [261 kB] Get:88 http://ftpmaster.internal/ubuntu artful/main s390x libkrb5support0 s390x 1.15.1-2 [31.5 kB] Get:89 http://ftpmaster.internal/ubuntu artful/main s390x libk5crypto3 s390x 1.15.1-2 [84.0 kB] Get:90 http://ftpmaster.internal/ubuntu artful/main s390x libidn2-0 s390x 2.0.2-1 [89.6 kB] Get:91 http://ftpmaster.internal/ubuntu artful-proposed/main s390x libpng16-16 s390x 1.6.31-1 [170 kB] Get:92 http://ftpmaster.internal/ubuntu artful/main s390x libpsl5 s390x 0.17.0-5 [40.4 kB] Get:93 http://ftpmaster.internal/ubuntu artful/main s390x advancecomp s390x 2.0-1 [183 kB] Get:94 http://ftpmaster.internal/ubuntu artful-proposed/main s390x binutils s390x 2.29-3ubuntu1 [1106 kB] Get:95 http://ftpmaster.internal/ubuntu artful-proposed/main s390x cpp-7 s390x 7.1.0-12ubuntu1 [28.7 MB] Get:96 http://ftpmaster.internal/ubuntu artful-proposed/main s390x cpp s390x 4:7.1.0-1ubuntu3 [27.6 kB] Get:97 http://ftpmaster.internal/ubuntu artful-proposed/main s390x libgomp1 s390x 7.1.0-12ubuntu1 [70.0 kB] Get:98 http://ftpmaster.internal/ubuntu artful-proposed/main s390x libitm1 s390x 7.1.0-12ubuntu1 [26.9 kB] Get:99 http://ftpmaster.internal/ubuntu artful-proposed/main s390x libatomic1 s390x 7.1.0-12ubuntu1 [8212 B] Get:100 http://ftpmaster.internal/ubuntu artful-proposed/main s390x g++-6 s390x 6.4.0-2ubuntu1 [5839 kB] Get:101 http://ftpmaster.internal/ubuntu artful-proposed/main s390x libstdc++-6-dev s390x 6.4.0-2ubuntu1 [1403 kB] Get:102 http://ftpmaster.internal/ubuntu artful-proposed/main s390x gcc-6 s390x 6.4.0-2ubuntu1 [5693 kB] Get:103 http://ftpmaster.internal/ubuntu artful-proposed/main s390x libgcc-6-dev s390x 6.4.0-2ubuntu1 [269 kB] Get:104 http://ftpmaster.internal/ubuntu artful-proposed/main s390x libcc1-0 s390x 7.1.0-12ubuntu1 [37.7 kB] Get:105 http://ftpmaster.internal/ubuntu artful-proposed/main s390x cpp-6 s390x 6.4.0-2ubuntu1 [5058 kB] Get:106 http://ftpmaster.internal/ubuntu artful-proposed/main s390x gcc-6-base s390x 6.4.0-2ubuntu1 [17.2 kB] Get:107 http://ftpmaster.internal/ubuntu artful/main s390x dpkg-dev all 1.18.24ubuntu1 [608 kB] Get:108 http://ftpmaster.internal/ubuntu artful/main s390x libdpkg-perl all 1.18.24ubuntu1 [209 kB] Get:109 http://ftpmaster.internal/ubuntu artful-proposed/main s390x libgcc-7-dev s390x 7.1.0-12ubuntu1 [272 kB] Get:110 http://ftpmaster.internal/ubuntu artful-proposed/main s390x gcc-7 s390x 7.1.0-12ubuntu1 [28.2 MB] Get:111 http://ftpmaster.internal/ubuntu artful-proposed/main s390x gcc s390x 4:7.1.0-1ubuntu3 [5268 B] Get:112 http://ftpmaster.internal/ubuntu artful-proposed/main s390x libstdc++-7-dev s390x 7.1.0-12ubuntu1 [1443 kB] Get:113 http://ftpmaster.internal/ubuntu artful-proposed/main s390x g++-7 s390x 7.1.0-12ubuntu1 [31.1 MB] Get:114 http://ftpmaster.internal/ubuntu artful-proposed/main s390x g++ s390x 4:7.1.0-1ubuntu3 [1480 B] Get:115 http://ftpmaster.internal/ubuntu artful/main s390x libusb-0.1-4 s390x 2:0.1.12-31 [16.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 147 MB in 2min 45s (890 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12209 files and directories currently installed.) Preparing to unpack .../debconf_1.5.63_all.deb ... Unpacking debconf (1.5.63) over (1.5.60ubuntu1) ... Setting up debconf (1.5.63) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14047 files and directories currently installed.) Preparing to unpack .../libapt-pkg5.0_1.5~beta1_s390x.deb ... Unpacking libapt-pkg5.0:s390x (1.5~beta1) over (1.4.1ubuntu2) ... Setting up libapt-pkg5.0:s390x (1.5~beta1) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14048 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a2.7.7-1ubuntu2_s390x.deb ... Unpacking libaudit1:s390x (1:2.7.7-1ubuntu2) over (1:2.6.6-1ubuntu1) ... Setting up libaudit1:s390x (1:2.7.7-1ubuntu2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14048 files and directories currently installed.) Preparing to unpack .../libgpg-error0_1.27-3_s390x.deb ... Unpacking libgpg-error0:s390x (1.27-3) over (1.26-2) ... Setting up libgpg-error0:s390x (1.27-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14048 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.7.8-2_s390x.deb ... Unpacking libgcrypt20:s390x (1.7.8-2) over (1.7.6-1) ... Setting up libgcrypt20:s390x (1.7.8-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14048 files and directories currently installed.) Preparing to unpack .../libkmod2_24-1ubuntu1_s390x.deb ... Unpacking libkmod2:s390x (24-1ubuntu1) over (22-1.1ubuntu1) ... Preparing to unpack .../systemd_234-2ubuntu2_s390x.deb ... Unpacking systemd (234-2ubuntu2) over (232-21ubuntu3) ... dpkg: warning: unable to delete old directory '/etc/dbus-1/system.d': Directory not empty dpkg: warning: unable to delete old directory '/etc/dbus-1': Directory not empty Preparing to unpack .../libsystemd0_234-2ubuntu2_s390x.deb ... Unpacking libsystemd0:s390x (234-2ubuntu2) over (232-21ubuntu3) ... Setting up libsystemd0:s390x (234-2ubuntu2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14073 files and directories currently installed.) Preparing to unpack .../archives/init_1.49_s390x.deb ... Unpacking init (1.49) over (1.47) ... Setting up libapparmor1:s390x (2.11.0-2ubuntu12) ... Setting up libip4tc0:s390x (1.6.1-2ubuntu1) ... Setting up libkmod2:s390x (24-1ubuntu1) ... Setting up systemd (234-2ubuntu2) ... Installing new version of config file /etc/systemd/logind.conf ... Installing new version of config file /etc/systemd/resolved.conf ... Created symlink /etc/systemd/system/dbus-org.freedesktop.resolve1.service -> /lib/systemd/system/systemd-resolved.service. Created symlink /etc/systemd/system/multi-user.target.wants/systemd-resolved.service -> /lib/systemd/system/systemd-resolved.service. addgroup: The group `systemd-journal' already exists as a system group. Exiting. Removing obsolete conffile /etc/dbus-1/system.d/org.freedesktop.hostname1.conf ... Removing obsolete conffile /etc/dbus-1/system.d/org.freedesktop.locale1.conf ... Removing obsolete conffile /etc/dbus-1/system.d/org.freedesktop.login1.conf ... Removing obsolete conffile /etc/dbus-1/system.d/org.freedesktop.network1.conf ... Removing obsolete conffile /etc/dbus-1/system.d/org.freedesktop.resolve1.conf ... Removing obsolete conffile /etc/dbus-1/system.d/org.freedesktop.systemd1.conf ... Removing obsolete conffile /etc/dbus-1/system.d/org.freedesktop.timedate1.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14073 files and directories currently installed.) Preparing to unpack .../systemd-sysv_234-2ubuntu2_s390x.deb ... Unpacking systemd-sysv (234-2ubuntu2) over (232-21ubuntu3) ... Preparing to unpack .../libcomerr2_1.43.5-1_s390x.deb ... Unpacking libcomerr2:s390x (1.43.5-1) over (1.43.4-2) ... Setting up libcomerr2:s390x (1.43.5-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14073 files and directories currently installed.) Preparing to unpack .../libsemanage-common_2.6-2build1_all.deb ... Unpacking libsemanage-common (2.6-2build1) over (2.6-2) ... Setting up libsemanage-common (2.6-2build1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14073 files and directories currently installed.) Preparing to unpack .../libsemanage1_2.6-2build1_s390x.deb ... Unpacking libsemanage1:s390x (2.6-2build1) over (2.6-2) ... Setting up libsemanage1:s390x (2.6-2build1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14073 files and directories currently installed.) Preparing to unpack .../libss2_1.43.5-1_s390x.deb ... Unpacking libss2:s390x (1.43.5-1) over (1.43.4-2) ... Setting up libss2:s390x (1.43.5-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14073 files and directories currently installed.) Preparing to unpack .../libudev1_234-2ubuntu2_s390x.deb ... Unpacking libudev1:s390x (234-2ubuntu2) over (232-21ubuntu3) ... Setting up libudev1:s390x (234-2ubuntu2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14073 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.2-3.2ubuntu2_s390x.deb ... Unpacking passwd (1:4.2-3.2ubuntu2) over (1:4.2-3.2ubuntu1) ... Setting up passwd (1:4.2-3.2ubuntu2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14073 files and directories currently installed.) Preparing to unpack .../00-libdevmapper1.02.1_2%3a1.02.137-2ubuntu2_s390x.deb ... Unpacking libdevmapper1.02.1:s390x (2:1.02.137-2ubuntu2) over (2:1.02.136-1ubuntu5) ... Preparing to unpack .../01-dmsetup_2%3a1.02.137-2ubuntu2_s390x.deb ... Unpacking dmsetup (2:1.02.137-2ubuntu2) over (2:1.02.136-1ubuntu5) ... Preparing to unpack .../02-libroken18-heimdal_7.4.0.dfsg.1-2_s390x.deb ... Unpacking libroken18-heimdal:s390x (7.4.0.dfsg.1-2) over (7.1.0+dfsg-9ubuntu1) ... Preparing to unpack .../03-libasn1-8-heimdal_7.4.0.dfsg.1-2_s390x.deb ... Unpacking libasn1-8-heimdal:s390x (7.4.0.dfsg.1-2) over (7.1.0+dfsg-9ubuntu1) ... Preparing to unpack .../04-libheimbase1-heimdal_7.4.0.dfsg.1-2_s390x.deb ... Unpacking libheimbase1-heimdal:s390x (7.4.0.dfsg.1-2) over (7.1.0+dfsg-9ubuntu1) ... Preparing to unpack .../05-libhcrypto4-heimdal_7.4.0.dfsg.1-2_s390x.deb ... Unpacking libhcrypto4-heimdal:s390x (7.4.0.dfsg.1-2) over (7.1.0+dfsg-9ubuntu1) ... Preparing to unpack .../06-libwind0-heimdal_7.4.0.dfsg.1-2_s390x.deb ... Unpacking libwind0-heimdal:s390x (7.4.0.dfsg.1-2) over (7.1.0+dfsg-9ubuntu1) ... Preparing to unpack .../07-libhx509-5-heimdal_7.4.0.dfsg.1-2_s390x.deb ... Unpacking libhx509-5-heimdal:s390x (7.4.0.dfsg.1-2) over (7.1.0+dfsg-9ubuntu1) ... Preparing to unpack .../08-libsqlite3-0_3.19.3-3_s390x.deb ... Unpacking libsqlite3-0:s390x (3.19.3-3) over (3.16.2-3) ... Preparing to unpack .../09-libkrb5-26-heimdal_7.4.0.dfsg.1-2_s390x.deb ... Unpacking libkrb5-26-heimdal:s390x (7.4.0.dfsg.1-2) over (7.1.0+dfsg-9ubuntu1) ... Preparing to unpack .../10-libheimntlm0-heimdal_7.4.0.dfsg.1-2_s390x.deb ... Unpacking libheimntlm0-heimdal:s390x (7.4.0.dfsg.1-2) over (7.1.0+dfsg-9ubuntu1) ... Preparing to unpack .../11-libgssapi3-heimdal_7.4.0.dfsg.1-2_s390x.deb ... Unpacking libgssapi3-heimdal:s390x (7.4.0.dfsg.1-2) over (7.1.0+dfsg-9ubuntu1) ... Preparing to unpack .../12-libldap-2.4-2_2.4.45+dfsg-1ubuntu1_s390x.deb ... Unpacking libldap-2.4-2:s390x (2.4.45+dfsg-1ubuntu1) over (2.4.44+dfsg-4ubuntu1) ... Preparing to unpack .../13-libldap-common_2.4.45+dfsg-1ubuntu1_all.deb ... Unpacking libldap-common (2.4.45+dfsg-1ubuntu1) over (2.4.44+dfsg-4ubuntu1) ... Preparing to unpack .../14-libnpth0_1.5-2_s390x.deb ... Unpacking libnpth0:s390x (1.5-2) over (1.3-1) ... Preparing to unpack .../15-libssl1.0.0_1.0.2g-1ubuntu13_s390x.deb ... Unpacking libssl1.0.0:s390x (1.0.2g-1ubuntu13) over (1.0.2g-1ubuntu12) ... Preparing to unpack .../16-multiarch-support_2.24-12ubuntu1_s390x.deb ... Unpacking multiarch-support (2.24-12ubuntu1) over (2.24-9ubuntu2) ... Preparing to unpack .../17-tzdata_2017b-2_all.deb ... Unpacking tzdata (2017b-2) over (2017b-1) ... Preparing to unpack .../18-xz-utils_5.2.2-1.3_s390x.deb ... Unpacking xz-utils (5.2.2-1.3) over (5.2.2-1.2) ... Preparing to unpack .../19-openssl_1.0.2g-1ubuntu13_s390x.deb ... Unpacking openssl (1.0.2g-1ubuntu13) over (1.0.2g-1ubuntu12) ... Preparing to unpack .../20-ca-certificates_20161130+nmu1_all.deb ... Unpacking ca-certificates (20161130+nmu1) over (20161130) ... Preparing to unpack .../21-libgssapi-krb5-2_1.15.1-2_s390x.deb ... Unpacking libgssapi-krb5-2:s390x (1.15.1-2) over (1.15-2) ... Preparing to unpack .../22-libkrb5-3_1.15.1-2_s390x.deb ... Unpacking libkrb5-3:s390x (1.15.1-2) over (1.15-2) ... Preparing to unpack .../23-libkrb5support0_1.15.1-2_s390x.deb ... Unpacking libkrb5support0:s390x (1.15.1-2) over (1.15-2) ... Preparing to unpack .../24-libk5crypto3_1.15.1-2_s390x.deb ... Unpacking libk5crypto3:s390x (1.15.1-2) over (1.15-2) ... Preparing to unpack .../25-libidn2-0_2.0.2-1_s390x.deb ... Unpacking libidn2-0:s390x (2.0.2-1) over (0.16-1) ... Preparing to unpack .../26-libpng16-16_1.6.31-1_s390x.deb ... Unpacking libpng16-16:s390x (1.6.31-1) over (1.6.29-2) ... Preparing to unpack .../27-libpsl5_0.17.0-5_s390x.deb ... Unpacking libpsl5:s390x (0.17.0-5) over (0.17.0-4) ... Preparing to unpack .../28-advancecomp_2.0-1_s390x.deb ... Unpacking advancecomp (2.0-1) over (1.20-1) ... Preparing to unpack .../29-binutils_2.29-3ubuntu1_s390x.deb ... Unpacking binutils (2.29-3ubuntu1) over (2.28-4ubuntu1) ... Selecting previously unselected package cpp-7. Preparing to unpack .../30-cpp-7_7.1.0-12ubuntu1_s390x.deb ... Unpacking cpp-7 (7.1.0-12ubuntu1) ... Preparing to unpack .../31-cpp_4%3a7.1.0-1ubuntu3_s390x.deb ... Unpacking cpp (4:7.1.0-1ubuntu3) over (4:6.3.0-2ubuntu1) ... Preparing to unpack .../32-libgomp1_7.1.0-12ubuntu1_s390x.deb ... Unpacking libgomp1:s390x (7.1.0-12ubuntu1) over (6.3.0-14ubuntu3) ... Preparing to unpack .../33-libitm1_7.1.0-12ubuntu1_s390x.deb ... Unpacking libitm1:s390x (7.1.0-12ubuntu1) over (6.3.0-14ubuntu3) ... Preparing to unpack .../34-libatomic1_7.1.0-12ubuntu1_s390x.deb ... Unpacking libatomic1:s390x (7.1.0-12ubuntu1) over (6.3.0-14ubuntu3) ... Preparing to unpack .../35-g++-6_6.4.0-2ubuntu1_s390x.deb ... Unpacking g++-6 (6.4.0-2ubuntu1) over (6.3.0-14ubuntu3) ... Preparing to unpack .../36-libstdc++-6-dev_6.4.0-2ubuntu1_s390x.deb ... Unpacking libstdc++-6-dev:s390x (6.4.0-2ubuntu1) over (6.3.0-14ubuntu3) ... Preparing to unpack .../37-gcc-6_6.4.0-2ubuntu1_s390x.deb ... Unpacking gcc-6 (6.4.0-2ubuntu1) over (6.3.0-14ubuntu3) ... Replacing files in old package cpp-6 (6.3.0-14ubuntu3) ... Preparing to unpack .../38-libgcc-6-dev_6.4.0-2ubuntu1_s390x.deb ... Unpacking libgcc-6-dev:s390x (6.4.0-2ubuntu1) over (6.3.0-14ubuntu3) ... Preparing to unpack .../39-libcc1-0_7.1.0-12ubuntu1_s390x.deb ... Unpacking libcc1-0:s390x (7.1.0-12ubuntu1) over (6.3.0-14ubuntu3) ... Preparing to unpack .../40-cpp-6_6.4.0-2ubuntu1_s390x.deb ... Unpacking cpp-6 (6.4.0-2ubuntu1) over (6.3.0-14ubuntu3) ... Preparing to unpack .../41-gcc-6-base_6.4.0-2ubuntu1_s390x.deb ... Unpacking gcc-6-base:s390x (6.4.0-2ubuntu1) over (6.3.0-14ubuntu3) ... Preparing to unpack .../42-dpkg-dev_1.18.24ubuntu1_all.deb ... Unpacking dpkg-dev (1.18.24ubuntu1) over (1.18.23ubuntu4) ... Preparing to unpack .../43-libdpkg-perl_1.18.24ubuntu1_all.deb ... Unpacking libdpkg-perl (1.18.24ubuntu1) over (1.18.23ubuntu4) ... Selecting previously unselected package libgcc-7-dev:s390x. Preparing to unpack .../44-libgcc-7-dev_7.1.0-12ubuntu1_s390x.deb ... Unpacking libgcc-7-dev:s390x (7.1.0-12ubuntu1) ... Selecting previously unselected package gcc-7. Preparing to unpack .../45-gcc-7_7.1.0-12ubuntu1_s390x.deb ... Unpacking gcc-7 (7.1.0-12ubuntu1) ... Preparing to unpack .../46-gcc_4%3a7.1.0-1ubuntu3_s390x.deb ... Removing old gcc doc directory. Unpacking gcc (4:7.1.0-1ubuntu3) over (4:6.3.0-2ubuntu1) ... Selecting previously unselected package libstdc++-7-dev:s390x. Preparing to unpack .../47-libstdc++-7-dev_7.1.0-12ubuntu1_s390x.deb ... Unpacking libstdc++-7-dev:s390x (7.1.0-12ubuntu1) ... Selecting previously unselected package g++-7. Preparing to unpack .../48-g++-7_7.1.0-12ubuntu1_s390x.deb ... Unpacking g++-7 (7.1.0-12ubuntu1) ... Preparing to unpack .../49-g++_4%3a7.1.0-1ubuntu3_s390x.deb ... Unpacking g++ (4:7.1.0-1ubuntu3) over (4:6.3.0-2ubuntu1) ... Preparing to unpack .../50-libusb-0.1-4_2%3a0.1.12-31_s390x.deb ... Unpacking libusb-0.1-4:s390x (2:0.1.12-31) over (2:0.1.12-30) ... Setting up libnpth0:s390x (1.5-2) ... Setting up libgomp1:s390x (7.1.0-12ubuntu1) ... Setting up libatomic1:s390x (7.1.0-12ubuntu1) ... Setting up perl-modules-5.24 (5.24.1-7ubuntu1) ... Setting up libperl5.24:s390x (5.24.1-7ubuntu1) ... Setting up libcc1-0:s390x (7.1.0-12ubuntu1) ... Setting up apt-transport-https (1.5~beta1) ... Setting up libidn2-0:s390x (2.0.2-1) ... Setting up libssl1.0.0:s390x (1.0.2g-1ubuntu13) ... Setting up libpng16-16:s390x (1.6.31-1) ... Setting up libldap-common (2.4.45+dfsg-1ubuntu1) ... Setting up libpsl5:s390x (0.17.0-5) ... Setting up multiarch-support (2.24-12ubuntu1) ... Setting up tzdata (2017b-2) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Aug 5 17:02:25 UTC 2017. Universal Time is now: Sat Aug 5 17:02:25 UTC 2017. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up systemd-sysv (234-2ubuntu2) ... Setting up gcc-6-base:s390x (6.4.0-2ubuntu1) ... Setting up linux-libc-dev:s390x (4.11.0-13.19) ... Setting up advancecomp (2.0-1) ... Setting up libroken18-heimdal:s390x (7.4.0.dfsg.1-2) ... Setting up libdevmapper1.02.1:s390x (2:1.02.137-2ubuntu2) ... Setting up perl-modules-5.26 (5.26.0-5) ... Setting up libkrb5support0:s390x (1.15.1-2) ... Setting up cpp-7 (7.1.0-12ubuntu1) ... Processing triggers for libc-bin (2.24-12ubuntu1) ... Setting up libperl5.26:s390x (5.26.0-5) ... Setting up xz-utils (5.2.2-1.3) ... Setting up libheimbase1-heimdal:s390x (7.4.0.dfsg.1-2) ... Setting up openssl (1.0.2g-1ubuntu13) ... Setting up libsqlite3-0:s390x (3.19.3-3) ... Setting up dmsetup (2:1.02.137-2ubuntu2) ... Setting up binutils (2.29-3ubuntu1) ... Setting up cpp-6 (6.4.0-2ubuntu1) ... Setting up libc-dev-bin (2.24-12ubuntu1) ... Setting up ca-certificates (20161130+nmu1) ... Updating certificates in /etc/ssl/certs... 0 added, 7 removed; done. Setting up libc6-dev:s390x (2.24-12ubuntu1) ... Setting up libusb-0.1-4:s390x (2:0.1.12-31) ... Setting up libitm1:s390x (7.1.0-12ubuntu1) ... Setting up cpp (4:7.1.0-1ubuntu3) ... Setting up libk5crypto3:s390x (1.15.1-2) ... Setting up libgcc-6-dev:s390x (6.4.0-2ubuntu1) ... Setting up libstdc++-6-dev:s390x (6.4.0-2ubuntu1) ... Setting up libwind0-heimdal:s390x (7.4.0.dfsg.1-2) ... Setting up init (1.49) ... Setting up libasn1-8-heimdal:s390x (7.4.0.dfsg.1-2) ... Setting up libhcrypto4-heimdal:s390x (7.4.0.dfsg.1-2) ... Setting up libhx509-5-heimdal:s390x (7.4.0.dfsg.1-2) ... Setting up libgcc-7-dev:s390x (7.1.0-12ubuntu1) ... Setting up gcc-6 (6.4.0-2ubuntu1) ... Setting up g++-6 (6.4.0-2ubuntu1) ... Setting up libstdc++-7-dev:s390x (7.1.0-12ubuntu1) ... Setting up perl (5.26.0-5) ... Removing obsolete conffile /etc/perl/sitecustomize.pl ... Setting up libkrb5-3:s390x (1.15.1-2) ... Setting up libkrb5-26-heimdal:s390x (7.4.0.dfsg.1-2) ... Setting up libheimntlm0-heimdal:s390x (7.4.0.dfsg.1-2) ... Setting up gcc-7 (7.1.0-12ubuntu1) ... Setting up g++-7 (7.1.0-12ubuntu1) ... Setting up libdpkg-perl (1.18.24ubuntu1) ... Setting up gcc (4:7.1.0-1ubuntu3) ... Setting up libgssapi-krb5-2:s390x (1.15.1-2) ... Setting up dpkg-dev (1.18.24ubuntu1) ... Setting up g++ (4:7.1.0-1ubuntu3) ... Setting up libgssapi3-heimdal:s390x (7.4.0.dfsg.1-2) ... Setting up libldap-2.4-2:s390x (2.4.45+dfsg-1ubuntu1) ... Processing triggers for libc-bin (2.24-12ubuntu1) ... Processing triggers for ca-certificates (20161130+nmu1) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-13203696', 's390x', 'artful-proposed', '-c', 'chroot:autobuild', '--arch=s390x', '--dist=artful-proposed', '--purge=never', '--nolog', 'python-pyvcf_0.6.8-1ubuntu4.dsc'] Initiating build PACKAGEBUILD-13203696 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-87-generic #110-Ubuntu SMP Tue Jul 18 12:56:43 UTC 2017 s390x sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on z13-026.buildd +==============================================================================+ | python-pyvcf 0.6.8-1ubuntu4 (s390x) 05 Aug 2017 17:02 | +==============================================================================+ Package: python-pyvcf Version: 0.6.8-1ubuntu4 Source Version: 0.6.8-1ubuntu4 Distribution: artful-proposed Machine Architecture: s390x Host Architecture: s390x Build Architecture: s390x I: NOTICE: Log filtering will replace 'build/python-pyvcf-ywlC2s/python-pyvcf-0.6.8' with '<>' I: NOTICE: Log filtering will replace 'build/python-pyvcf-ywlC2s' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-13203696/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- python-pyvcf_0.6.8-1ubuntu4.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-LXvsMw/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-LXvsMw/apt_archive ./ InRelease Get:2 copy:/<>/resolver-LXvsMw/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-LXvsMw/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-LXvsMw/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-LXvsMw/apt_archive ./ Packages [527 B] Fetched 2860 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-6 libperl5.24 libstdc++-6-dev perl-modules-5.24 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 782 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-LXvsMw/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [782 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 782 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 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Merged Build-Depends: debhelper (>= 10), dh-python, cython, python-dev, python-setuptools, cython3, python3-all-dev, python3-setuptools Filtered Build-Depends: debhelper (>= 10), dh-python, cython, python-dev, python-setuptools, cython3, python3-all-dev, python3-setuptools dpkg-deb: building package 'sbuild-build-depends-python-pyvcf-dummy' in '/<>/resolver-clHk4Z/apt_archive/sbuild-build-depends-python-pyvcf-dummy.deb'. Ign:1 copy:/<>/resolver-clHk4Z/apt_archive ./ InRelease Get:2 copy:/<>/resolver-clHk4Z/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-clHk4Z/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-clHk4Z/apt_archive ./ Sources [245 B] Get:5 copy:/<>/resolver-clHk4Z/apt_archive ./ Packages [563 B] Fetched 2927 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install python-pyvcf build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-6 libperl5.24 libstdc++-6-dev perl-modules-5.24 Use 'sudo apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cython cython3 debhelper dh-autoreconf dh-python dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libglib2.0-0 libicu57 libmagic-mgc libmagic1 libmpdec2 libpipeline1 libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.6 libpython3.6-dev libpython3.6-minimal libpython3.6-stdlib libsigsegv2 libtimedate-perl libtool libxml2 m4 man-db mime-support po-debconf python python-dev python-minimal python-pkg-resources python-setuptools python2.7 python2.7-dev python2.7-minimal python3 python3-all python3-all-dev python3-dev python3-minimal python3-pkg-resources python3-setuptools python3.6 python3.6-dev python3.6-minimal Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation cython-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc less www-browser libmail-box-perl python-doc python-tk python-setuptools-doc python2.7-doc binfmt-support python3-doc python3-tk python3-venv python3.6-venv python3.6-doc Recommended packages: curl | wget | lynx-cur libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev xml-core libmail-sendmail-perl The following packages will be REMOVED: pkg-create-dbgsym* The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cython cython3 debhelper dh-autoreconf dh-python dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libglib2.0-0 libicu57 libmagic-mgc libmagic1 libmpdec2 libpipeline1 libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.6 libpython3.6-dev libpython3.6-minimal libpython3.6-stdlib libsigsegv2 libtimedate-perl libtool libxml2 m4 man-db mime-support po-debconf python python-dev python-minimal python-pkg-resources python-setuptools python2.7 python2.7-dev python2.7-minimal python3 python3-all python3-all-dev python3-dev python3-minimal python3-pkg-resources python3-setuptools python3.6 python3.6-dev python3.6-minimal sbuild-build-depends-python-pyvcf-dummy 0 upgraded, 68 newly installed, 1 to remove and 0 not upgraded. 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Unpacking python3-setuptools (36.0.1-1ubuntu1) ... Selecting previously unselected package sbuild-build-depends-python-pyvcf-dummy. Preparing to unpack .../45-sbuild-build-depends-python-pyvcf-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-python-pyvcf-dummy (0.invalid.0) ... Setting up libarchive-zip-perl (1.59-1) ... Setting up mime-support (3.60ubuntu1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libsigsegv2:s390x (2.11-1) ... Setting up groff-base (1.22.3-9) ... Setting up libglib2.0-0:s390x (2.53.4-3) ... No schema files found: doing nothing. Setting up gettext-base (0.19.8.1-2ubuntu1) ... Setting up libpipeline1:s390x (1.4.2-1) ... Setting up m4 (1.4.18-1) ... Setting up libicu57:s390x (57.1-6) ... Setting up libbsd0:s390x (0.8.6-1) ... Setting up libxml2:s390x (2.9.4+dfsg1-3build2) ... Setting up libmagic-mgc (1:5.30-1) ... Setting up libmagic1:s390x (1:5.30-1) ... Setting up libcroco3:s390x (0.6.12-1) ... Processing triggers for libc-bin (2.24-12ubuntu1) ... Setting up autotools-dev (20161112.1) ... Setting up libexpat1-dev:s390x (2.2.3-1) ... Setting up bsdmainutils (9.0.12+nmu1ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libpython2.7-stdlib:s390x (2.7.13-4) ... Setting up autopoint (0.19.8.1-2ubuntu1) ... Setting up libmpdec2:s390x (2.4.2-1) ... Setting up libfile-stripnondeterminism-perl (0.038-1) ... Setting up libpython3.6-stdlib:s390x (3.6.2-2) ... Setting up python3.6 (3.6.2-2) ... Setting up gettext (0.19.8.1-2ubuntu1) ... Setting up python2.7 (2.7.13-4) ... Setting up autoconf (2.69-10) ... Setting up file (1:5.30-1) ... Setting up libpython-stdlib:s390x (2.7.13-2) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libpython2.7:s390x (2.7.13-4) ... Setting up automake (1:1.15-6ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.7.6.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython2.7-dev:s390x (2.7.13-4) ... Setting up python2.7-dev (2.7.13-4) ... Setting up python (2.7.13-2) ... Setting up libpython3.6:s390x (3.6.2-2) ... Setting up libtool (2.4.6-2) ... Setting up libpython3-stdlib:s390x (3.6.1-0ubuntu3) ... Setting up libpython-dev:s390x (2.7.13-2) ... Setting up po-debconf (1.0.20) ... Setting up python-dev (2.7.13-2) ... Setting up python-pkg-resources (36.0.1-1ubuntu1) ... Setting up libpython3.6-dev:s390x (3.6.2-2) ... Setting up cython (0.25.2-2) ... Setting up python3.6-dev (3.6.2-2) ... Setting up libpython3-dev:s390x (3.6.1-0ubuntu3) ... Setting up python-setuptools (36.0.1-1ubuntu1) ... Setting up libpython3-all-dev:s390x (3.6.1-0ubuntu3) ... Setting up dh-autoreconf (14) ... Setting up python3 (3.6.1-0ubuntu3) ... Setting up python3-dev (3.6.1-0ubuntu3) ... Setting up python3-pkg-resources (36.0.1-1ubuntu1) ... Setting up dh-strip-nondeterminism (0.038-1) ... Setting up python3-all (3.6.1-0ubuntu3) ... Setting up cython3 (0.25.2-2) ... Setting up python3-setuptools (36.0.1-1ubuntu1) ... Setting up dh-python (2.20170125) ... Setting up debhelper (10.6.4ubuntu1) ... Setting up python3-all-dev (3.6.1-0ubuntu3) ... Setting up sbuild-build-depends-python-pyvcf-dummy (0.invalid.0) ... (Reading database ... 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Processing triggers for libc-bin (2.24-12ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-87-generic s390x (s390x) Toolchain package versions: binutils_2.29-3ubuntu1 dpkg-dev_1.18.24ubuntu1 g++-6_6.4.0-2ubuntu1 g++-7_7.1.0-12ubuntu1 gcc-6_6.4.0-2ubuntu1 gcc-7_7.1.0-12ubuntu1 libc6-dev_2.24-12ubuntu1 libstdc++-6-dev_6.4.0-2ubuntu1 libstdc++-7-dev_7.1.0-12ubuntu1 libstdc++6_7.1.0-12ubuntu1 linux-libc-dev_4.11.0-13.19 Package versions: adduser_3.113+nmu3ubuntu5 advancecomp_2.0-1 apt_1.5~beta1 apt-transport-https_1.5~beta1 autoconf_2.69-10 automake_1:1.15-6ubuntu1 autopoint_0.19.8.1-2ubuntu1 autotools-dev_20161112.1 base-files_9.6ubuntu101 base-passwd_3.5.43 bash_4.4-5ubuntu1 binutils_2.29-3ubuntu1 bsdmainutils_9.0.12+nmu1ubuntu1 bsdutils_1:2.30.1-0ubuntu2 build-essential_12.1ubuntu2 bzip2_1.0.6-8.1 ca-certificates_20161130+nmu1 coreutils_8.26-3ubuntu3 cpp_4:7.1.0-1ubuntu3 cpp-6_6.4.0-2ubuntu1 cpp-7_7.1.0-12ubuntu1 cython_0.25.2-2 cython3_0.25.2-2 dash_0.5.8-2.3ubuntu1 debconf_1.5.63 debhelper_10.6.4ubuntu1 debianutils_4.8.1.1 dh-autoreconf_14 dh-python_2.20170125 dh-strip-nondeterminism_0.038-1 diffutils_1:3.6-1 dmsetup_2:1.02.137-2ubuntu2 dpkg_1.18.24ubuntu1 dpkg-dev_1.18.24ubuntu1 e2fslibs_1.43.5-1 e2fsprogs_1.43.5-1 fakeroot_1.21-1ubuntu2 file_1:5.30-1 findutils_4.6.0+git+20170729-2 g++_4:7.1.0-1ubuntu3 g++-6_6.4.0-2ubuntu1 g++-7_7.1.0-12ubuntu1 gcc_4:7.1.0-1ubuntu3 gcc-6_6.4.0-2ubuntu1 gcc-6-base_6.4.0-2ubuntu1 gcc-7_7.1.0-12ubuntu1 gcc-7-base_7.1.0-12ubuntu1 gettext_0.19.8.1-2ubuntu1 gettext-base_0.19.8.1-2ubuntu1 gnupg_2.1.15-1ubuntu7 gnupg-agent_2.1.15-1ubuntu7 gpgv_2.1.15-1ubuntu7 grep_3.1-2 groff-base_1.22.3-9 gzip_1.6-5ubuntu1 hostname_3.18 init_1.49 init-system-helpers_1.49 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libapparmor1_2.11.0-2ubuntu12 libapt-pkg5.0_1.5~beta1 libarchive-zip-perl_1.59-1 libasn1-8-heimdal_7.4.0.dfsg.1-2 libassuan0_2.4.3-2 libatomic1_7.1.0-12ubuntu1 libattr1_1:2.4.47-2build1 libaudit-common_1:2.7.7-1ubuntu2 libaudit1_1:2.7.7-1ubuntu2 libblkid1_2.30.1-0ubuntu2 libbsd0_0.8.6-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.24-12ubuntu1 libc-dev-bin_2.24-12ubuntu1 libc6_2.24-12ubuntu1 libc6-dev_2.24-12ubuntu1 libcap-ng0_0.7.7-3build1 libcap2_1:2.25-1 libcc1-0_7.1.0-12ubuntu1 libcomerr2_1.43.5-1 libcroco3_0.6.12-1 libcryptsetup4_2:1.7.2-0ubuntu1 libcurl3-gnutls_7.52.1-5ubuntu1 libdb5.3_5.3.28-13 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.137-2ubuntu2 libdpkg-perl_1.18.24ubuntu1 libexpat1_2.2.3-1 libexpat1-dev_2.2.3-1 libfakeroot_1.21-1ubuntu2 libfdisk1_2.30.1-0ubuntu2 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.038-1 libgcc-6-dev_6.4.0-2ubuntu1 libgcc-7-dev_7.1.0-12ubuntu1 libgcc1_1:7.1.0-12ubuntu1 libgcrypt20_1.7.8-2 libgdbm3_1.8.3-14 libglib2.0-0_2.53.4-3 libgmp10_2:6.1.2+dfsg-1 libgnutls30_3.5.8-6ubuntu1 libgomp1_7.1.0-12ubuntu1 libgpg-error0_1.27-3 libgssapi-krb5-2_1.15.1-2 libgssapi3-heimdal_7.4.0.dfsg.1-2 libhcrypto4-heimdal_7.4.0.dfsg.1-2 libheimbase1-heimdal_7.4.0.dfsg.1-2 libheimntlm0-heimdal_7.4.0.dfsg.1-2 libhogweed4_3.3-1 libhx509-5-heimdal_7.4.0.dfsg.1-2 libicu57_57.1-6 libidn11_1.33-1 libidn2-0_2.0.2-1 libip4tc0_1.6.1-2ubuntu1 libisl15_0.18-1 libitm1_7.1.0-12ubuntu1 libk5crypto3_1.15.1-2 libkeyutils1_1.5.9-9ubuntu1 libkmod2_24-1ubuntu1 libkrb5-26-heimdal_7.4.0.dfsg.1-2 libkrb5-3_1.15.1-2 libkrb5support0_1.15.1-2 libksba8_1.3.5-2 libldap-2.4-2_2.4.45+dfsg-1ubuntu1 libldap-common_2.4.45+dfsg-1ubuntu1 liblockfile-bin_1.14-1 liblockfile1_1.14-1 liblz4-1_0.0~r131-2ubuntu2 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.30-1 libmagic1_1:5.30-1 libmount1_2.30.1-0ubuntu2 libmpc3_1.0.3-1 libmpdec2_2.4.2-1 libmpfr4_3.1.5-1 libncurses5_6.0+20160625-1ubuntu1 libncursesw5_6.0+20160625-1ubuntu1 libnettle6_3.3-1 libnpth0_1.5-2 libp11-kit0_0.23.7-3 libpam-modules_1.1.8-3.2ubuntu3 libpam-modules-bin_1.1.8-3.2ubuntu3 libpam-runtime_1.1.8-3.2ubuntu3 libpam0g_1.1.8-3.2ubuntu3 libpcre3_2:8.39-4 libperl5.24_5.24.1-7ubuntu1 libperl5.26_5.26.0-5 libpipeline1_1.4.2-1 libpng16-16_1.6.31-1 libprocps6_2:3.3.12-1ubuntu2 libpsl5_0.17.0-5 libpython-dev_2.7.13-2 libpython-stdlib_2.7.13-2 libpython2.7_2.7.13-4 libpython2.7-dev_2.7.13-4 libpython2.7-minimal_2.7.13-4 libpython2.7-stdlib_2.7.13-4 libpython3-all-dev_3.6.1-0ubuntu3 libpython3-dev_3.6.1-0ubuntu3 libpython3-stdlib_3.6.1-0ubuntu3 libpython3.6_3.6.2-2 libpython3.6-dev_3.6.2-2 libpython3.6-minimal_3.6.2-2 libpython3.6-stdlib_3.6.2-2 libreadline7_7.0-0ubuntu2 libroken18-heimdal_7.4.0.dfsg.1-2 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.27~101-g0780600+dfsg-2ubuntu1 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-2ubuntu1 libseccomp2_2.3.1-2.1ubuntu1 libselinux1_2.6-3build2 libsemanage-common_2.6-2build1 libsemanage1_2.6-2build1 libsepol1_2.6-2 libsigsegv2_2.11-1 libslang2_2.3.1-5ubuntu1 libsmartcols1_2.30.1-0ubuntu2 libsqlite3-0_3.19.3-3 libss2_1.43.5-1 libssl1.0.0_1.0.2g-1ubuntu13 libstdc++-6-dev_6.4.0-2ubuntu1 libstdc++-7-dev_7.1.0-12ubuntu1 libstdc++6_7.1.0-12ubuntu1 libsystemd0_234-2ubuntu2 libtasn1-6_4.12-2.1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160625-1ubuntu1 libtool_2.4.6-2 libudev1_234-2ubuntu2 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-31 libustr-1.0-1_1.0.4-6 libuuid1_2.30.1-0ubuntu2 libwind0-heimdal_7.4.0.dfsg.1-2 libxml2_2.9.4+dfsg1-3build2 linux-libc-dev_4.11.0-13.19 lockfile-progs_0.1.17build1 login_1:4.2-3.2ubuntu2 lsb-base_9.20160110ubuntu5 m4_1.4.18-1 make_4.1-9.1 man-db_2.7.6.1-2 mawk_1.3.3-17ubuntu2 mime-support_3.60ubuntu1 mount_2.30.1-0ubuntu2 multiarch-support_2.24-12ubuntu1 ncurses-base_6.0+20160625-1ubuntu1 ncurses-bin_6.0+20160625-1ubuntu1 openssl_1.0.2g-1ubuntu13 optipng_0.7.6-1build1 passwd_1:4.2-3.2ubuntu2 patch_2.7.5-1build1 perl_5.26.0-5 perl-base_5.26.0-5 perl-modules-5.24_5.24.1-7ubuntu1 perl-modules-5.26_5.26.0-5 pinentry-curses_1.0.0-2 pkgbinarymangler_131 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-1ubuntu2 python_2.7.13-2 python-dev_2.7.13-2 python-minimal_2.7.13-2 python-pkg-resources_36.0.1-1ubuntu1 python-setuptools_36.0.1-1ubuntu1 python2.7_2.7.13-4 python2.7-dev_2.7.13-4 python2.7-minimal_2.7.13-4 python3_3.6.1-0ubuntu3 python3-all_3.6.1-0ubuntu3 python3-all-dev_3.6.1-0ubuntu3 python3-dev_3.6.1-0ubuntu3 python3-minimal_3.6.1-0ubuntu3 python3-pkg-resources_36.0.1-1ubuntu1 python3-setuptools_36.0.1-1ubuntu1 python3.6_3.6.2-2 python3.6-dev_3.6.2-2 python3.6-minimal_3.6.2-2 readline-common_7.0-0ubuntu2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-python-pyvcf-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.9+nmu1 systemd_234-2ubuntu2 systemd-sysv_234-2ubuntu2 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.8git1 tar_1.29b-2 tzdata_2017b-2 ubuntu-keyring_2016.10.27 util-linux_2.30.1-0ubuntu2 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Sat Aug 5 16:38:42 2017 UTC gpgv: using RSA key gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./python-pyvcf_0.6.8-1ubuntu4.dsc dpkg-source: info: extracting python-pyvcf in python-pyvcf-0.6.8 dpkg-source: info: unpacking python-pyvcf_0.6.8.orig.tar.xz dpkg-source: info: unpacking python-pyvcf_0.6.8-1ubuntu4.debian.tar.xz Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/home/buildd LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/<> SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /<> su buildd -s /bin/sh -c cd '/<>' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package python-pyvcf dpkg-buildpackage: info: source version 0.6.8-1ubuntu4 dpkg-buildpackage: info: source distribution artful dpkg-source --before-build python-pyvcf-0.6.8 dpkg-buildpackage: info: host architecture s390x fakeroot debian/rules clean dh clean --with python2,python3 --buildsystem=pybuild dh_testdir -O--buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:184: python2.7 setup.py clean running clean removing '/<>/.pybuild/pythonX.Y_2.7/build' (and everything under it) 'build/bdist.linux-s390x' does not exist -- can't clean it 'build/scripts-2.7' does not exist -- can't clean it I: pybuild base:184: python3.6 setup.py clean running clean removing '/<>/.pybuild/pythonX.Y_3.6/build' (and everything under it) 'build/bdist.linux-s390x' does not exist -- can't clean it 'build/scripts-3.6' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules build-arch dh build-arch --with python2,python3 --buildsystem=pybuild dh_testdir -a -O--buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild I: pybuild base:184: python2.7 setup.py config running config I: pybuild base:184: python3.6 setup.py config running config dh_auto_build -a -O--buildsystem=pybuild I: pybuild base:184: /usr/bin/python setup.py build running build running build_py creating /<>/.pybuild/pythonX.Y_2.7/build/vcf copying vcf/filters.py -> /<>/.pybuild/pythonX.Y_2.7/build/vcf copying vcf/parser.py -> /<>/.pybuild/pythonX.Y_2.7/build/vcf copying vcf/model.py -> /<>/.pybuild/pythonX.Y_2.7/build/vcf copying vcf/__init__.py -> /<>/.pybuild/pythonX.Y_2.7/build/vcf copying vcf/sample_filter.py -> /<>/.pybuild/pythonX.Y_2.7/build/vcf copying vcf/utils.py -> /<>/.pybuild/pythonX.Y_2.7/build/vcf creating /<>/.pybuild/pythonX.Y_2.7/build/vcf/test copying vcf/test/__init__.py -> /<>/.pybuild/pythonX.Y_2.7/build/vcf/test copying vcf/test/prof.py -> /<>/.pybuild/pythonX.Y_2.7/build/vcf/test copying vcf/test/test_vcf.py -> /<>/.pybuild/pythonX.Y_2.7/build/vcf/test running egg_info creating PyVCF.egg-info writing requirements to PyVCF.egg-info/requires.txt writing PyVCF.egg-info/PKG-INFO writing top-level names to PyVCF.egg-info/top_level.txt writing dependency_links to PyVCF.egg-info/dependency_links.txt writing entry points to PyVCF.egg-info/entry_points.txt writing manifest file 'PyVCF.egg-info/SOURCES.txt' reading manifest file 'PyVCF.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'PyVCF.egg-info/SOURCES.txt' copying vcf/cparse.pyx -> /<>/.pybuild/pythonX.Y_2.7/build/vcf copying vcf/test/issue-140-file3.vcf -> /<>/.pybuild/pythonX.Y_2.7/build/vcf/test copying vcf/test/mixed-filtering.vcf -> /<>/.pybuild/pythonX.Y_2.7/build/vcf/test copying vcf/test/issue-214.vcf -> /<>/.pybuild/pythonX.Y_2.7/build/vcf/test copying vcf/test/FT.vcf -> /<>/.pybuild/pythonX.Y_2.7/build/vcf/test copying vcf/test/issue-140-file2.vcf -> /<>/.pybuild/pythonX.Y_2.7/build/vcf/test copying vcf/test/metadata-whitespace.vcf -> /<>/.pybuild/pythonX.Y_2.7/build/vcf/test copying vcf/test/example-4.1-sv.vcf -> /<>/.pybuild/pythonX.Y_2.7/build/vcf/test copying vcf/test/contig_idonly.vcf -> /<>/.pybuild/pythonX.Y_2.7/build/vcf/test copying vcf/test/string_as_flag.vcf -> /<>/.pybuild/pythonX.Y_2.7/build/vcf/test copying vcf/test/gonl.chr20.release4.gtc.vcf -> /<>/.pybuild/pythonX.Y_2.7/build/vcf/test copying vcf/test/gatk.vcf -> /<>/.pybuild/pythonX.Y_2.7/build/vcf/test copying vcf/test/parse-meta-line.vcf -> /<>/.pybuild/pythonX.Y_2.7/build/vcf/test copying vcf/test/example-4.1-info-multiple-values.vcf -> /<>/.pybuild/pythonX.Y_2.7/build/vcf/test copying vcf/test/walk_left.vcf -> /<>/.pybuild/pythonX.Y_2.7/build/vcf/test copying vcf/test/info-type-character.vcf -> /<>/.pybuild/pythonX.Y_2.7/build/vcf/test copying vcf/test/strelka.vcf -> /<>/.pybuild/pythonX.Y_2.7/build/vcf/test copying vcf/test/issue-16.vcf -> /<>/.pybuild/pythonX.Y_2.7/build/vcf/test copying vcf/test/issue-140-file1.vcf -> /<>/.pybuild/pythonX.Y_2.7/build/vcf/test copying vcf/test/gatk_26_meta.vcf -> /<>/.pybuild/pythonX.Y_2.7/build/vcf/test copying vcf/test/uncalled_genotypes.vcf -> /<>/.pybuild/pythonX.Y_2.7/build/vcf/test copying vcf/test/example-4.2.vcf -> /<>/.pybuild/pythonX.Y_2.7/build/vcf/test copying vcf/test/1kg.sites.vcf -> /<>/.pybuild/pythonX.Y_2.7/build/vcf/test copying vcf/test/samtools.vcf -> /<>/.pybuild/pythonX.Y_2.7/build/vcf/test copying vcf/test/example-4.0.vcf -> /<>/.pybuild/pythonX.Y_2.7/build/vcf/test copying vcf/test/issue_49.vcf -> /<>/.pybuild/pythonX.Y_2.7/build/vcf/test copying vcf/test/null_genotype_mono.vcf -> /<>/.pybuild/pythonX.Y_2.7/build/vcf/test copying vcf/test/walk_refcall.vcf -> /<>/.pybuild/pythonX.Y_2.7/build/vcf/test copying vcf/test/example-4.1-bnd.vcf -> /<>/.pybuild/pythonX.Y_2.7/build/vcf/test copying vcf/test/freebayes.vcf -> /<>/.pybuild/pythonX.Y_2.7/build/vcf/test copying vcf/test/example-4.1.vcf -> /<>/.pybuild/pythonX.Y_2.7/build/vcf/test copying vcf/test/samples-space.vcf -> /<>/.pybuild/pythonX.Y_2.7/build/vcf/test copying vcf/test/example-4.1-ploidy.vcf -> /<>/.pybuild/pythonX.Y_2.7/build/vcf/test copying vcf/test/bcftools.vcf -> /<>/.pybuild/pythonX.Y_2.7/build/vcf/test copying vcf/test/tb.vcf.gz -> /<>/.pybuild/pythonX.Y_2.7/build/vcf/test copying vcf/test/1kg.vcf.gz -> /<>/.pybuild/pythonX.Y_2.7/build/vcf/test copying vcf/test/issue-201.vcf.gz -> /<>/.pybuild/pythonX.Y_2.7/build/vcf/test copying vcf/test/tb.vcf.gz.tbi -> /<>/.pybuild/pythonX.Y_2.7/build/vcf/test copying vcf/test/issue-201.vcf.gz.tbi -> /<>/.pybuild/pythonX.Y_2.7/build/vcf/test running build_ext cythoning vcf/cparse.pyx to vcf/cparse.c warning: vcf/cparse.pyx:16:14: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: vcf/cparse.pyx:16:21: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: vcf/cparse.pyx:16:27: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: vcf/cparse.pyx:16:40: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. building 'vcf.cparse' extension creating build creating build/temp.linux-s390x-2.7 creating build/temp.linux-s390x-2.7/vcf s390x-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c vcf/cparse.c -o build/temp.linux-s390x-2.7/vcf/cparse.o s390x-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-xeDdFg/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-s390x-2.7/vcf/cparse.o -o /<>/.pybuild/pythonX.Y_2.7/build/vcf/cparse.so running build_scripts creating build/scripts-2.7 copying and adjusting scripts/vcf_melt -> build/scripts-2.7 copying and adjusting scripts/vcf_filter.py -> build/scripts-2.7 copying and adjusting scripts/vcf_sample_filter.py -> build/scripts-2.7 changing mode of build/scripts-2.7/vcf_melt from 664 to 775 changing mode of build/scripts-2.7/vcf_filter.py from 664 to 775 changing mode of build/scripts-2.7/vcf_sample_filter.py from 664 to 775 I: pybuild base:184: /usr/bin/python3 setup.py build running build running build_py creating /<>/.pybuild/pythonX.Y_3.6/build/vcf copying vcf/filters.py -> /<>/.pybuild/pythonX.Y_3.6/build/vcf copying vcf/parser.py -> /<>/.pybuild/pythonX.Y_3.6/build/vcf copying vcf/model.py -> /<>/.pybuild/pythonX.Y_3.6/build/vcf copying vcf/__init__.py -> /<>/.pybuild/pythonX.Y_3.6/build/vcf copying vcf/sample_filter.py -> /<>/.pybuild/pythonX.Y_3.6/build/vcf copying vcf/utils.py -> /<>/.pybuild/pythonX.Y_3.6/build/vcf creating /<>/.pybuild/pythonX.Y_3.6/build/vcf/test copying vcf/test/__init__.py -> /<>/.pybuild/pythonX.Y_3.6/build/vcf/test copying vcf/test/prof.py -> /<>/.pybuild/pythonX.Y_3.6/build/vcf/test copying vcf/test/test_vcf.py -> /<>/.pybuild/pythonX.Y_3.6/build/vcf/test running egg_info writing PyVCF.egg-info/PKG-INFO writing dependency_links to PyVCF.egg-info/dependency_links.txt writing entry points to PyVCF.egg-info/entry_points.txt writing requirements to PyVCF.egg-info/requires.txt writing top-level names to PyVCF.egg-info/top_level.txt reading manifest file 'PyVCF.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'PyVCF.egg-info/SOURCES.txt' copying vcf/cparse.pyx -> /<>/.pybuild/pythonX.Y_3.6/build/vcf copying vcf/test/issue-140-file3.vcf -> /<>/.pybuild/pythonX.Y_3.6/build/vcf/test copying vcf/test/mixed-filtering.vcf -> /<>/.pybuild/pythonX.Y_3.6/build/vcf/test copying vcf/test/issue-214.vcf -> /<>/.pybuild/pythonX.Y_3.6/build/vcf/test copying vcf/test/FT.vcf -> /<>/.pybuild/pythonX.Y_3.6/build/vcf/test copying vcf/test/issue-140-file2.vcf -> /<>/.pybuild/pythonX.Y_3.6/build/vcf/test copying vcf/test/metadata-whitespace.vcf -> /<>/.pybuild/pythonX.Y_3.6/build/vcf/test copying vcf/test/example-4.1-sv.vcf -> /<>/.pybuild/pythonX.Y_3.6/build/vcf/test copying vcf/test/contig_idonly.vcf -> /<>/.pybuild/pythonX.Y_3.6/build/vcf/test copying vcf/test/string_as_flag.vcf -> /<>/.pybuild/pythonX.Y_3.6/build/vcf/test copying vcf/test/gonl.chr20.release4.gtc.vcf -> /<>/.pybuild/pythonX.Y_3.6/build/vcf/test copying vcf/test/gatk.vcf -> /<>/.pybuild/pythonX.Y_3.6/build/vcf/test copying vcf/test/parse-meta-line.vcf -> /<>/.pybuild/pythonX.Y_3.6/build/vcf/test copying vcf/test/example-4.1-info-multiple-values.vcf -> /<>/.pybuild/pythonX.Y_3.6/build/vcf/test copying vcf/test/walk_left.vcf -> /<>/.pybuild/pythonX.Y_3.6/build/vcf/test copying vcf/test/info-type-character.vcf -> /<>/.pybuild/pythonX.Y_3.6/build/vcf/test copying vcf/test/strelka.vcf -> /<>/.pybuild/pythonX.Y_3.6/build/vcf/test copying vcf/test/issue-16.vcf -> /<>/.pybuild/pythonX.Y_3.6/build/vcf/test copying vcf/test/issue-140-file1.vcf -> /<>/.pybuild/pythonX.Y_3.6/build/vcf/test copying vcf/test/gatk_26_meta.vcf -> /<>/.pybuild/pythonX.Y_3.6/build/vcf/test copying vcf/test/uncalled_genotypes.vcf -> /<>/.pybuild/pythonX.Y_3.6/build/vcf/test copying vcf/test/example-4.2.vcf -> /<>/.pybuild/pythonX.Y_3.6/build/vcf/test copying vcf/test/1kg.sites.vcf -> /<>/.pybuild/pythonX.Y_3.6/build/vcf/test copying vcf/test/samtools.vcf -> /<>/.pybuild/pythonX.Y_3.6/build/vcf/test copying vcf/test/example-4.0.vcf -> /<>/.pybuild/pythonX.Y_3.6/build/vcf/test copying vcf/test/issue_49.vcf -> /<>/.pybuild/pythonX.Y_3.6/build/vcf/test copying vcf/test/null_genotype_mono.vcf -> /<>/.pybuild/pythonX.Y_3.6/build/vcf/test copying vcf/test/walk_refcall.vcf -> /<>/.pybuild/pythonX.Y_3.6/build/vcf/test copying vcf/test/example-4.1-bnd.vcf -> /<>/.pybuild/pythonX.Y_3.6/build/vcf/test copying vcf/test/freebayes.vcf -> /<>/.pybuild/pythonX.Y_3.6/build/vcf/test copying vcf/test/example-4.1.vcf -> /<>/.pybuild/pythonX.Y_3.6/build/vcf/test copying vcf/test/samples-space.vcf -> /<>/.pybuild/pythonX.Y_3.6/build/vcf/test copying vcf/test/example-4.1-ploidy.vcf -> /<>/.pybuild/pythonX.Y_3.6/build/vcf/test copying vcf/test/bcftools.vcf -> /<>/.pybuild/pythonX.Y_3.6/build/vcf/test copying vcf/test/tb.vcf.gz -> /<>/.pybuild/pythonX.Y_3.6/build/vcf/test copying vcf/test/1kg.vcf.gz -> /<>/.pybuild/pythonX.Y_3.6/build/vcf/test copying vcf/test/issue-201.vcf.gz -> /<>/.pybuild/pythonX.Y_3.6/build/vcf/test copying vcf/test/tb.vcf.gz.tbi -> /<>/.pybuild/pythonX.Y_3.6/build/vcf/test copying vcf/test/issue-201.vcf.gz.tbi -> /<>/.pybuild/pythonX.Y_3.6/build/vcf/test Fixing /<>/.pybuild/pythonX.Y_3.6/build/vcf/filters.py /<>/.pybuild/pythonX.Y_3.6/build/vcf/parser.py /<>/.pybuild/pythonX.Y_3.6/build/vcf/model.py /<>/.pybuild/pythonX.Y_3.6/build/vcf/__init__.py /<>/.pybuild/pythonX.Y_3.6/build/vcf/sample_filter.py /<>/.pybuild/pythonX.Y_3.6/build/vcf/utils.py /<>/.pybuild/pythonX.Y_3.6/build/vcf/test/__init__.py /<>/.pybuild/pythonX.Y_3.6/build/vcf/test/prof.py /<>/.pybuild/pythonX.Y_3.6/build/vcf/test/test_vcf.py Skipping optional fixer: buffer Skipping optional fixer: idioms Skipping optional fixer: set_literal Skipping optional fixer: ws_comma Fixing /<>/.pybuild/pythonX.Y_3.6/build/vcf/filters.py /<>/.pybuild/pythonX.Y_3.6/build/vcf/parser.py /<>/.pybuild/pythonX.Y_3.6/build/vcf/model.py /<>/.pybuild/pythonX.Y_3.6/build/vcf/__init__.py /<>/.pybuild/pythonX.Y_3.6/build/vcf/sample_filter.py /<>/.pybuild/pythonX.Y_3.6/build/vcf/utils.py /<>/.pybuild/pythonX.Y_3.6/build/vcf/test/__init__.py /<>/.pybuild/pythonX.Y_3.6/build/vcf/test/prof.py /<>/.pybuild/pythonX.Y_3.6/build/vcf/test/test_vcf.py Skipping optional fixer: buffer Skipping optional fixer: idioms Skipping optional fixer: set_literal Skipping optional fixer: ws_comma running build_ext skipping 'vcf/cparse.c' Cython extension (up-to-date) building 'vcf.cparse' extension creating build/temp.linux-s390x-3.6 creating build/temp.linux-s390x-3.6/vcf s390x-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.6m -c vcf/cparse.c -o build/temp.linux-s390x-3.6/vcf/cparse.o s390x-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-s390x-3.6/vcf/cparse.o -o /<>/.pybuild/pythonX.Y_3.6/build/vcf/cparse.cpython-36m-s390x-linux-gnu.so running build_scripts creating build/scripts-3.6 copying and adjusting scripts/vcf_melt -> build/scripts-3.6 copying and adjusting scripts/vcf_filter.py -> build/scripts-3.6 copying and adjusting scripts/vcf_sample_filter.py -> build/scripts-3.6 changing mode of build/scripts-3.6/vcf_melt from 664 to 775 changing mode of build/scripts-3.6/vcf_filter.py from 664 to 775 changing mode of build/scripts-3.6/vcf_sample_filter.py from 664 to 775 dh_auto_test -a -O--buildsystem=pybuild I: pybuild base:184: python2.7 setup.py test running test running egg_info writing requirements to PyVCF.egg-info/requires.txt writing PyVCF.egg-info/PKG-INFO writing top-level names to PyVCF.egg-info/top_level.txt writing dependency_links to PyVCF.egg-info/dependency_links.txt writing entry points to PyVCF.egg-info/entry_points.txt reading manifest file 'PyVCF.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'PyVCF.egg-info/SOURCES.txt' running build_ext skipping 'vcf/cparse.c' Cython extension (up-to-date) building 'vcf.cparse' extension s390x-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c vcf/cparse.c -o build/temp.linux-s390x-2.7/vcf/cparse.o s390x-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-xeDdFg/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-s390x-2.7/vcf/cparse.o -o /<>/vcf/cparse.so test_contig_idonly (vcf.test.test_vcf.TestVcfSpecs) Test VCF inputs with ##contig inputs containing only IDs. produced by bcftools 1.2+ ... ok test_vcf_4_0 (vcf.test.test_vcf.TestVcfSpecs) ... ok test_vcf_4_1 (vcf.test.test_vcf.TestVcfSpecs) ... ok test_vcf_4_1_bnd (vcf.test.test_vcf.TestVcfSpecs) ... ok test_vcf_4_1_sv (vcf.test.test_vcf.TestVcfSpecs) ... ok test_vcf_4_2 (vcf.test.test_vcf.TestVcfSpecs) ... ok testCalls (vcf.test.test_vcf.TestGatkOutput) ... ok testFormats (vcf.test.test_vcf.TestGatkOutput) ... ok testInfos (vcf.test.test_vcf.TestGatkOutput) ... ok testSamples (vcf.test.test_vcf.TestGatkOutput) ... ok testCalls (vcf.test.test_vcf.TestFreebayesOutput) ... ok testFormats (vcf.test.test_vcf.TestFreebayesOutput) ... ok testInfos (vcf.test.test_vcf.TestFreebayesOutput) ... ok testParse (vcf.test.test_vcf.TestFreebayesOutput) ... ok testSamples (vcf.test.test_vcf.TestFreebayesOutput) ... ok testParse (vcf.test.test_vcf.TestSamtoolsOutput) ... ok testParse (vcf.test.test_vcf.TestBcfToolsOutput) ... ok test_issue_214_is_snp (vcf.test.test_vcf.TestIssue214) ... ok test_issue_214_ref_is_del_is_snp (vcf.test.test_vcf.TestIssue214) ... ok test_issue_214_ref_is_del_var_type (vcf.test.test_vcf.TestIssue214) ... ok test_issue_214_var_type (vcf.test.test_vcf.TestIssue214) ... ok testParse (vcf.test.test_vcf.Test1kg) ... ok test_issue_49 (vcf.test.test_vcf.Test1kg) docstring for test_issue_49 ... ok test_reader (vcf.test.test_vcf.Test1kgSites) The samples attribute should be the empty list. ... ok test_writer (vcf.test.test_vcf.Test1kgSites) FORMAT should not be written if not present in the template and no ... ok testParse (vcf.test.test_vcf.TestGoNL) ... ok test_contig_line (vcf.test.test_vcf.TestGoNL) ... ok test_string_as_flag (vcf.test.test_vcf.TestStringAsFlag) A flag INFO field is declared as string (not allowed by the spec, ... ok test_writer (vcf.test.test_vcf.TestInfoOrder) ... ok test_parse (vcf.test.test_vcf.TestInfoTypeCharacter) ... ok test_write (vcf.test.test_vcf.TestInfoTypeCharacter) ... ok test_parse (vcf.test.test_vcf.TestParseMetaLine) ... ok test_write (vcf.test.test_vcf.TestParseMetaLine) ... ok testWrite (vcf.test.test_vcf.TestGatkOutputWriter) ... Record(CHROM=1, POS=2, REF=A, ALT=[T]) T Call(sample=Germline, CallData(GT=0|1, MQ=[0, 40], HAP=[35, 46])) Call(sample=Tumor, CallData(GT=0|1, MQ=[0, 0], HAP=[35, 46])) Record(CHROM=1, POS=2, REF=T, ALT=[T[2:3[]) T[2:3[ Call(sample=Germline, CallData(GT=0|0, MQ=[0, 0], BHAP=['35>35', '46>46'])) Call(sample=Tumor, CallData(GT=0|1, MQ=[0, 40], BHAP=['35>35', '46>17'])) Record(CHROM=1, POS=3, REF=A, ALT=[]2:2]A]) ]2:2]A Call(sample=Germline, CallData(GT=0|0, MQ=[0, 0], BHAP=['35>35', '46>46'])) Call(sample=Tumor, CallData(GT=0|1, MQ=[0, 40], BHAP=['35>35', '46>17'])) Record(CHROM=2, POS=1, REF=G, ALT=[T]) T Call(sample=Germline, CallData(GT=1|0, MQ=[0, 40], HAP=[17, 23])) Call(sample=Tumor, CallData(GT=1|0, MQ=[0, 0], HAP=[17, 23])) Record(CHROM=2, POS=2, REF=G, ALT=[G[1:3[]) G[1:3[ Call(sample=Germline, CallData(GT=0|0, MQ=[0, 0], BHAP=['17>17', '23>23'], BCN=['1', '1'])) Call(sample=Tumor, CallData(GT=0|1, MQ=[0, 40], BHAP=['23>23', '17>46'], BCN=['2', '1'])) Record(CHROM=2, POS=3, REF=G, ALT=[]1:2]G]) ]1:2]G Call(sample=Germline, CallData(GT=0|0, MQ=[0, 0], BHAP=['17>17', '23>23'], BCN=['1', '1'])) Call(sample=Tumor, CallData(GT=0|1, MQ=[0, 40], BHAP=['23>23', '17>46'], BCN=['2', '1'])) Record(CHROM=2, POS=4, REF=G, ALT=[]2:6]G]) ]2:6]G Call(sample=Germline, CallData(GT=0|0, MQ=[0, 0], BHAP=['17>17', '23>23'], AHAP=[17, 23], BCN=['1', '1'])) Call(sample=Tumor, CallData(GT=0|0|1, MQ=[0, 0, 40], BHAP=['17>17', '23>23', '24>23'], AHAP=[17, 23, 23], BCN=['1', '2', '2'])) Record(CHROM=2, POS=6, REF=T, ALT=[T[2:4[]) T[2:4[ Call(sample=Germline, CallData(GT=0|0, MQ=[0, 0], BHAP=['17>17', '23>23'], AHAP=[17, 23], BCN=['1', '1'])) Call(sample=Tumor, CallData(GT=0|1|0, MQ=[0, 40, 0], BHAP=['17>17', '23>24', '24>24'], AHAP=[17, 23, 23], BCN=['1', '2', '2'])) Record(CHROM=2, POS=6, REF=T, ALT=[A]) A Call(sample=Germline, CallData(GT=0|1, MQ=[0, 40], HAP=[23, 17], AHAP=[23, 17])) Call(sample=Tumor, CallData(GT=0|1|1, MQ=[0, 0, 0], HAP=[17, 23, 24], AHAP=[17, 23, 23])) Record(CHROM=2, POS=8, REF=T, ALT=[A]) A Call(sample=Germline, CallData(GT=0|0, MQ=[0, 0], HAP=[23, 17], AHAP=[23, 17])) Call(sample=Tumor, CallData(GT=0|1|1, MQ=[0, 40, 40], HAP=[17, 23, 24], AHAP=[17, 23, 23])) Record(CHROM=1, POS=2827693, REF=CCGTGGATGCGGGGACCCGCATCCCCTCTCCCTTCACAGCTGAGTGACCCACATCCCCTCTCCCCTCGCA, ALT=[C]) C Call(sample=NA00001, CallData(GT=1/1, GQ=13.9)) Record(CHROM=2, POS=321682, REF=T, ALT=[]) Call(sample=NA00001, CallData(GT=0/1, GQ=12.0)) Record(CHROM=2, POS=14477084, REF=C, ALT=[]) Call(sample=NA00001, CallData(GT=0/1, GQ=12.0)) Record(CHROM=3, POS=9425916, REF=C, ALT=[]) Call(sample=NA00001, CallData(GT=1/1, GQ=15.0)) Record(CHROM=3, POS=12665100, REF=A, ALT=[]) Call(sample=NA00001, CallData(GT=./., GQ=0.0, CN=3, CNQ=16.2)) Record(CHROM=4, POS=18665128, REF=T, ALT=[]) Call(sample=NA00001, CallData(GT=./., GQ=0.0, CN=5, CNQ=8.3)) ['BLANK', 'NA12878', 'NA12891', 'NA12892', 'NA19238', 'NA19239', 'NA19240'] ##fileformat=VCFv4.1 ##UnifiedGenotyper="analysis_type=UnifiedGenotyper input_file=[reads.bam] read_buffer_size=null phone_home=NO_ET read_filter=[] intervals=[chr22:42020321-42527953] excludeIntervals=null interval_set_rule=UNION interval_merging=ALL reference_sequence=/data/reference/ucsc/hg19/ucsc.hg19.fasta rodBind=[] nonDeterministicRandomSeed=false downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=250 baq=CALCULATE_AS_NECESSARY baqGapOpenPenalty=40.0 performanceLog=null useOriginalQualities=false defaultBaseQualities=-1 validation_strictness=SILENT unsafe=null num_threads=2 num_cpu_threads=null num_io_threads=null num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false logging_level=INFO log_to_file=gatk.log help=false genotype_likelihoods_model=SNP p_nonref_model=EXACT heterozygosity=0.001 pcr_error_rate=1.0E-4 genotyping_mode=DISCOVERY output_mode=EMIT_VARIANTS_ONLY standard_min_confidence_threshold_for_calling=30.0 standard_min_confidence_threshold_for_emitting=30.0 computeSLOD=false alleles=(RodBinding name= source=UNBOUND) min_base_quality_score=17 max_deletion_fraction=0.15 multiallelic=false max_alternate_alleles=5 min_indel_count_for_genotyping=5 indel_heterozygosity=1.25E-4 indelGapContinuationPenalty=10.0 indelGapOpenPenalty=45.0 indelHaplotypeSize=80 bandedIndel=false indelDebug=false ignoreSNPAlleles=false dbsnp=(RodBinding name=dbsnp source=/data/reference/dbSNP_132/dbsnp_132.hg19.vcf) out=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub NO_HEADER=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub sites_only=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub debug_file=null metrics_file=null annotation=[] excludeAnnotation=[] filter_mismatching_base_and_quals=false" ##reference=file:///data/reference/ucsc/hg19/ucsc.hg19.fasta ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT BLANK NA12878 NA12891 NA12892 NA19238 NA19239 NA19240 chr22 42522392 rs28371738 G A 2951.95 . AC=2;AF=0.143;AN=14;BaseQRankSum=0.375;DB;DP=1506;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=123.5516;MQ=253.92;MQ0=0;MQRankSum=0.685;QD=5.9;ReadPosRankSum=0.59 GT:AD:DP:GQ:PL 0/0:6,0:6:18.04:0,18,211 0/1:138,107:250:99.0:1961,0,3049 0/1:169,77:250:99.0:1038,0,3533 0/0:249,0:250:99.0:0,600,5732 0/0:248,1:250:99.0:0,627,6191 0/0:250,0:250:99.0:0,615,5899 0/0:250,0:250:99.0:0,579,5674 chr22 42522613 rs1135840 G C 11611.03 . AC=6;AF=0.429;AN=14;BaseQRankSum=16.289;DB;DP=1518;DS;Dels=0.03;FS=0.0;HRun=0;HaplotypeScore=142.5716;MQ=242.46;MQ0=0;MQRankSum=2.01;QD=9.16;ReadPosRankSum=-1.731 GT:AD:DP:GQ:PL 0/1:13,4:17:62.64:63,0,296 0/1:118,127:246:99.0:2396,0,1719 0/0:241,0:244:99.0:0,459,4476 0/1:161,85:246:99.0:1489,0,2353 0/1:110,132:242:99.0:2561,0,1488 0/1:106,135:242:99.0:2613,0,1389 0/1:116,126:243:99.0:2489,0,1537 chr22 42522755 . C G 36.98 . AC=1;AF=0.071;AN=14;BaseQRankSum=-14.866;DP=1527;DS;Dels=0.01;FS=0.0;HRun=0;HaplotypeScore=253.4254;MQ=197.36;MQ0=2;MQRankSum=-10.81;QD=0.15;ReadPosRankSum=-17.244 GT:AD:DP:GQ:PL 0/0:26,1:27:51.08:0,51,570 0/0:208,40:248:99.0:0,236,4169 0/0:192,56:249:99.0:0,114,4292 0/1:179,66:245:75.42:75,0,3683 0/0:214,32:246:99.0:0,172,4235 0/0:200,49:249:61.05:0,61,4049 0/0:195,50:246:32.07:0,32,3757 chr22 42523003 rs116917064 A G 7113.55 . AC=8;AF=0.571;AN=14;BaseQRankSum=6.026;DB;DP=1433;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=101.7894;MQ=182.04;MQ0=0;MQRankSum=-2.501;QD=4.96;ReadPosRankSum=8.294 GT:AD:DP:GQ:PL 0/1:10,2:12:0.62:1,0,257 1/1:9,173:183:99.0:2385,273,0 0/1:153,95:249:99.0:355,0,2355 0/1:140,110:250:99.0:1334,0,2242 0/1:164,85:249:99.0:1070,0,2279 0/1:160,90:250:99.0:1245,0,2300 0/1:156,81:238:99.0:724,0,2764 chr22 42523077 . A G 54.31 . AC=1;AF=0.071;AN=14;BaseQRankSum=-0.563;DP=1521;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=54.8434;MQ=164.04;MQ0=1;MQRankSum=-2.419;QD=2.59;ReadPosRankSum=-1.229 GT:AD:DP:GQ:PL 0/1:17,4:21:92.74:93,0,533 0/0:249,1:250:99.0:0,544,6985 0/0:250,0:250:99.0:0,577,6968 0/0:248,2:250:99.0:0,605,7687 0/0:248,1:249:99.0:0,583,7300 0/0:246,2:249:99.0:0,626,7473 0/0:248,1:249:99.0:0,594,7553 chr22 42523209 rs28371730 T C 15556.89 . AC=8;AF=0.571;AN=14;BaseQRankSum=3.458;DB;DP=1509;DS;Dels=0.01;FS=0.0;HRun=0;HaplotypeScore=120.8206;MQ=221.07;MQ0=0;MQRankSum=-4.945;QD=10.31;ReadPosRankSum=0.639 GT:AD:DP:GQ:PL 0/1:3,6:9:99.0:154,0,101 1/1:6,237:247:99.0:4532,308,0 0/1:130,117:248:99.0:1399,0,3147 0/1:112,129:244:99.0:2641,0,2556 0/1:115,127:247:99.0:2320,0,2526 0/1:115,128:248:99.0:2546,0,2520 0/1:143,104:249:99.0:1965,0,3288 chr22 42523211 rs2004511 T C 2445.52 . AC=2;AF=0.143;AN=14;BaseQRankSum=10.587;DB;DP=1509;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=102.7564;MQ=221.5;MQ0=0;MQRankSum=-6.926;QD=4.89;ReadPosRankSum=2.057 GT:AD:DP:GQ:PL 0/0:9,0:9:24.06:0,24,289 0/1:136,113:250:99.0:1384,0,2176 0/1:146,104:250:99.0:1108,0,2809 0/0:247,3:250:99.0:0,439,5546 0/0:245,2:249:99.0:0,459,5316 0/0:248,2:250:99.0:0,459,5404 0/0:248,1:250:99.0:0,533,6069 chr22 42523409 rs1985842 G T 6801.9 . AC=6;AF=0.429;AN=14;BaseQRankSum=20.509;DB;DP=1454;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=150.8967;MQ=200.12;MQ0=0;MQRankSum=4.472;QD=5.65;ReadPosRankSum=9.396 GT:AD:DP:GQ:PL 0/1:1,3:4:25.84:53,0,26 0/1:153,95:249:99.0:1597,0,1798 0/0:245,4:250:99.0:0,336,4079 0/1:168,82:250:99.0:1339,0,1880 0/1:147,103:250:99.0:1522,0,1805 0/1:156,94:250:99.0:1341,0,2322 0/1:129,71:201:99.0:949,0,2082 chr22 42523805 rs28371725 C T 1637.33 . AC=1;AF=0.071;AN=14;BaseQRankSum=-0.379;DB;DP=1516;DS;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=77.2321;MQ=226.05;MQ0=0;MQRankSum=2.862;QD=6.55;ReadPosRankSum=0.064 GT:AD:DP:GQ:PL 0/0:16,0:16:39.09:0,39,475 0/0:248,1:249:99.0:0,613,7187 0/1:132,116:248:99.0:1676,0,2916 0/0:248,0:248:99.0:0,625,7171 0/0:248,2:250:99.0:0,604,7252 0/0:250,0:250:99.0:0,631,7426 0/0:248,1:249:99.0:0,584,6964 chr22 42523943 rs16947 A G 23661.1 . AC=8;AF=0.571;AN=14;BaseQRankSum=4.602;DB;DP=1514;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=38.3217;MQ=238.64;MQ0=0;MQRankSum=2.485;QD=15.63;ReadPosRankSum=3.749 GT:AD:DP:GQ:PL 0/1:9,5:14:99.0:163,0,303 1/1:3,246:250:99.0:8092,667,0 0/1:129,116:246:99.0:3190,0,2852 0/1:149,98:247:99.0:2429,0,3588 0/1:129,118:247:99.0:3267,0,3052 0/1:122,123:245:99.0:3428,0,3052 0/1:124,119:244:99.0:3092,0,2845 chr22 42524150 . C G 3758.65 . AC=8;AF=0.571;AN=14;BaseQRankSum=24.314;DP=1506;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=172.5901;MQ=242.92;MQ0=0;MQRankSum=11.537;QD=2.5;ReadPosRankSum=-9.185 GT:AD:DP:GQ:PL 1/1:3,3:6:5.98:46,6,0 0/1:161,88:250:99.0:708,0,300 0/1:161,88:250:99.0:635,0,308 0/1:160,90:250:99.0:658,0,229 0/1:180,69:250:99.0:478,0,113 0/1:176,73:250:99.0:530,0,271 0/1:170,79:249:99.0:704,0,133 chr22 42524435 rs1807313 T A 5252.25 . AC=3;AF=0.214;AN=14;BaseQRankSum=-0.192;DB;DP=1526;DS;Dels=0.01;FS=0.0;HRun=1;HaplotypeScore=152.3866;MQ=242.06;MQ0=0;MQRankSum=1.923;QD=9.99;ReadPosRankSum=3.008 GT:AD:DP:GQ:PL 0/1:7,19:26:99.0:456,0,195 0/0:250,0:250:99.0:0,698,8167 0/0:246,2:249:99.0:0,673,7735 0/0:248,2:250:99.0:0,685,7919 0/0:250,0:250:99.0:0,688,7814 0/1:120,126:247:99.0:2539,0,3250 0/1:131,110:246:99.0:2257,0,3278 chr22 42524696 rs58440431 T C 6423.61 . AC=2;AF=0.143;AN=14;BaseQRankSum=3.119;DB;DP=1509;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=53.0005;MQ=230.78;MQ0=0;MQRankSum=2.825;QD=12.85;ReadPosRankSum=2.051 GT:AD:DP:GQ:PL 0/0:9,0:9:27.08:0,27,351 0/1:132,116:250:99.0:3341,0,3914 0/1:141,108:250:99.0:3082,0,3917 0/0:248,1:250:99.0:0,692,8578 0/0:250,0:250:99.0:0,743,8836 0/0:247,2:250:99.0:0,695,8726 0/0:249,1:250:99.0:0,699,8650 chr22 42524947 rs3892097 C T 731.18 . AC=2;AF=0.143;AN=14;BaseQRankSum=0.602;DB;DP=1495;DS;Dels=0.01;FS=0.0;HRun=1;HaplotypeScore=154.5421;MQ=217.65;MQ0=0;MQRankSum=4.304;QD=1.47;ReadPosRankSum=1.019 GT:AD:DP:GQ:PL 0/0:3,0:3:8.99:0,9,89 0/1:108,75:244:99.0:403,0,1684 0/1:125,74:242:99.0:375,0,2335 0/0:227,1:249:99.0:0,460,5036 0/0:226,1:247:99.0:0,448,4884 0/0:192,1:247:99.0:0,400,4405 0/0:194,1:247:99.0:0,405,4694 chr22 42525132 rs1058164 G C 14639.91 . AC=5;AF=0.357;AN=14;BaseQRankSum=4.944;DB;DP=1508;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=38.1229;MQ=207.02;MQ0=6;MQRankSum=2.51;QD=11.71;ReadPosRankSum=0.306 GT:AD:DP:GQ:PL 0/0:8,0:8:24.05:0,24,309 0/1:125,125:250:99.0:3147,0,3294 0/0:245,1:248:99.0:0,549,7172 0/1:139,109:248:99.0:2470,0,3232 0/1:136,107:243:99.0:2545,0,3408 0/1:116,130:247:99.0:3206,0,2926 0/1:122,124:247:99.0:3271,0,3300 chr22 42525772 rs28371706 G A 7552.52 . AC=4;AF=0.286;AN=14;BaseQRankSum=12.028;DB;DP=1506;DS;Dels=0.01;FS=0.0;HRun=0;HaplotypeScore=89.8512;MQ=222.09;MQ0=0;MQRankSum=5.2;QD=9.99;ReadPosRankSum=2.275 GT:AD:DP:GQ:PL 0/1:4,2:6:29.34:29,0,147 0/0:249,0:249:99.0:0,592,6835 0/0:249,1:250:99.0:0,590,7041 0/0:248,0:248:99.0:0,652,7316 0/1:126,120:248:99.0:2668,0,2833 0/1:134,113:247:99.0:2453,0,2485 0/1:137,113:250:99.0:2403,0,2988 chr22 42525798 rs28371705 G C 1954.58 . AC=2;AF=0.143;AN=14;BaseQRankSum=6.229;DB;DP=1509;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=36.0442;MQ=228.55;MQ0=0;MQRankSum=0.852;QD=3.91;ReadPosRankSum=6.52 GT:AD:DP:GQ:PL 0/0:9,0:9:27.08:0,27,342 0/1:164,85:250:99.0:981,0,3519 0/1:171,79:250:99.0:1020,0,3665 0/0:249,1:250:99.0:0,526,6474 0/0:249,1:250:99.0:0,550,6481 0/0:248,2:250:99.0:0,542,6933 0/0:250,0:250:99.0:0,604,7282 chr22 42525811 rs28371704 T C 3688.26 . AC=2;AF=0.143;AN=14;BaseQRankSum=4.752;DB;DP=1510;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=36.9902;MQ=210.28;MQ0=0;MQRankSum=2.309;QD=7.38;ReadPosRankSum=6.262 GT:AD:DP:GQ:PL 0/0:10,0:10:27.06:0,27,333 0/1:163,86:249:99.0:1958,0,3391 0/1:167,78:245:99.0:1730,0,3945 0/0:248,1:249:99.0:0,542,6887 0/0:246,1:247:99.0:0,550,6569 0/0:247,1:250:99.0:0,548,6954 0/0:249,1:250:99.0:0,557,7079 chr22 42525821 rs28371703 G T 3940.9 . AC=2;AF=0.143;AN=14;BaseQRankSum=4.652;DB;DP=1510;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=34.0483;MQ=210.28;MQ0=0;MQRankSum=2.924;QD=7.88;ReadPosRankSum=5.487 GT:AD:DP:GQ:PL 0/0:10,0:10:24.08:0,24,317 0/1:164,85:250:99.0:2033,0,3659 0/1:167,79:249:99.0:1907,0,4271 0/0:249,1:250:99.0:0,565,7321 0/0:249,1:250:99.0:0,545,7102 0/0:248,2:250:99.0:0,536,7254 0/0:249,0:250:99.0:0,605,7633 chr22 42525952 rs71328650 C A 5872.92 . AC=7;AF=0.5;AN=14;BaseQRankSum=25.986;DB;DP=1505;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=144.2979;MQ=173.55;MQ0=0;MQRankSum=3.66;QD=4.68;ReadPosRankSum=7.152 GT:AD:DP:GQ:PL 1/1:2,3:5:6.0:53,6,0 0/1:132,117:250:99.0:1397,0,702 0/0:248,1:250:99.0:0,245,2219 0/1:166,83:250:99.0:1151,0,934 0/1:164,86:250:99.0:1070,0,1147 0/1:170,80:250:99.0:1009,0,1141 0/1:162,87:250:99.0:1194,0,1085 chr22 42526049 . C G 8544.41 . AC=10;AF=0.714;AN=14;BaseQRankSum=-8.121;DP=1505;DS;Dels=0.01;FS=0.0;HRun=0;HaplotypeScore=241.7335;MQ=162.18;MQ0=2;MQRankSum=-1.399;QD=6.81;ReadPosRankSum=2.132 GT:AD:DP:GQ:PL 1/1:0,5:5:3.0:26,3,0 0/1:86,162:248:99.0:1053,0,1167 0/0:235,12:248:99.0:0,378,3886 0/1:108,137:245:99.0:782,0,1662 1/1:3,242:245:99.0:2351,264,0 1/1:5,245:250:99.0:2193,222,0 1/1:4,242:246:99.0:2140,240,0 chr22 42526449 . T A 151.47 . AC=1;AF=0.071;AN=14;BaseQRankSum=2.662;DP=1226;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=41.2083;MQ=240.47;MQ0=0;MQRankSum=0.578;QD=4.89;ReadPosRankSum=3.611 GT:AD:DP:GQ:PL 0/1:23,8:31:99.0:190,0,694 0/0:188,0:190:99.0:0,478,5376 0/0:187,0:187:99.0:0,493,5322 0/0:247,0:249:99.0:0,634,6728 0/0:185,0:185:99.0:0,487,5515 0/0:202,0:202:99.0:0,520,5857 0/0:181,1:182:99.0:0,440,5362 chr22 42526484 rs28371699 A C 4220.99 . AC=6;AF=0.429;AN=14;BaseQRankSum=-17.855;DB;DP=1532;DS;Dels=0.02;FS=0.0;HRun=0;HaplotypeScore=136.8893;MQ=233.92;MQ0=0;MQRankSum=3.448;QD=3.29;ReadPosRankSum=-2.663 GT:AD:DP:GQ:PL 0/1:16,15:31:99.0:238,0,428 0/1:112,135:247:99.0:796,0,1908 0/0:227,13:241:99.0:0,433,4747 0/1:108,133:242:99.0:588,0,2014 0/1:90,154:245:99.0:1055,0,1892 0/1:112,131:246:99.0:741,0,2222 0/1:108,137:246:99.0:803,0,2266 chr22 42526549 rs56011157 C T 14276.31 . AC=8;AF=0.571;AN=14;BaseQRankSum=17.75;DB;DP=1537;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=87.3394;MQ=231.34;MQ0=0;MQRankSum=4.781;QD=9.29;ReadPosRankSum=7.463 GT:AD:DP:GQ:PL 0/1:22,15:37:99.0:251,0,330 1/1:23,227:250:99.0:5404,430,0 0/1:151,98:250:99.0:1878,0,2475 0/1:153,97:250:99.0:1769,0,2410 0/1:149,100:250:99.0:1792,0,2569 0/1:164,84:250:99.0:1440,0,2646 0/1:149,98:248:99.0:1742,0,2601 chr22 42526561 rs28695233 G T 4524.61 . AC=7;AF=0.5;AN=14;BaseQRankSum=9.714;DB;DP=1538;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=98.8415;MQ=220.45;MQ0=0;MQRankSum=9.43;QD=3.02;ReadPosRankSum=7.682 GT:AD:DP:GQ:PL 0/0:22,15:38:15.74:0,16,609 1/1:4,240:249:99.0:2685,237,0 0/1:142,108:250:99.0:505,0,3133 0/1:138,109:249:99.0:521,0,3281 0/1:150,99:249:99.0:336,0,3601 0/1:153,93:250:99.0:194,0,3695 0/1:148,97:249:99.0:283,0,3093 chr22 42526562 rs75276289 G C 3780.51 . AC=6;AF=0.429;AN=14;BaseQRankSum=15.2;DB;DP=1540;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=116.437;MQ=215.67;MQ0=0;MQRankSum=9.072;QD=2.52;ReadPosRankSum=10.863 GT:AD:DP:GQ:PL 0/0:25,15:40:17.73:0,18,633 0/1:50,199:250:99.0:1522,0,283 0/1:143,106:250:99.0:600,0,2844 0/1:143,107:250:99.0:605,0,3002 0/1:151,99:250:99.0:432,0,3352 0/1:157,93:250:99.0:254,0,3483 0/1:149,99:248:99.0:368,0,2999 chr22 42526567 rs76312385 G A 434.33 . AC=1;AF=0.071;AN=14;BaseQRankSum=18.089;DB;DP=1540;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=89.3746;MQ=219.8;MQ0=0;MQRankSum=6.196;QD=1.74;ReadPosRankSum=7.564 GT:AD:DP:GQ:PL 0/0:22,18:40:4.68:0,5,427 0/1:34,215:250:56.26:473,0,56 0/0:142,108:250:20.78:0,21,2288 0/0:142,108:250:49.48:0,49,2451 0/0:152,97:250:99.0:0,210,2801 0/0:150,100:250:34.96:0,35,2515 0/0:148,102:250:77.19:0,77,2590 chr22 42526571 rs74644586 C G 339.6 . AC=1;AF=0.071;AN=14;BaseQRankSum=-11.48;DB;DP=1540;DS;Dels=0.02;FS=0.0;HRun=4;HaplotypeScore=93.3402;MQ=218.52;MQ0=0;MQRankSum=3.709;QD=1.36;ReadPosRankSum=6.322 GT:AD:DP:GQ:PL 0/0:22,18:40:36.46:0,36,689 0/1:4,232:239:30.49:378,0,30 0/0:138,110:249:99.0:0,295,4017 0/0:137,111:249:99.0:0,250,4041 0/0:147,97:245:99.0:0,321,4348 0/0:150,97:247:99.0:0,358,4657 0/0:144,101:247:99.0:0,275,4123 chr22 42526573 rs1080996 T G 12579.34 . AC=8;AF=0.571;AN=14;BaseQRankSum=6.163;DB;DP=1540;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=76.655;MQ=224.49;MQ0=0;MQRankSum=1.355;QD=8.17;ReadPosRankSum=5.794 GT:AD:DP:GQ:PL 0/1:22,18:40:99.0:200,0,668 1/1:4,244:248:99.0:5175,439,0 0/1:136,110:250:99.0:1862,0,3521 0/1:136,113:249:99.0:1734,0,3677 0/1:144,99:250:99.0:1119,0,3818 0/1:150,99:250:99.0:1196,0,4178 0/1:145,104:250:99.0:1293,0,3628 chr22 42526580 rs1080995 G C 16619.47 . AC=8;AF=0.571;AN=14;BaseQRankSum=7.991;DB;DP=1541;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=56.1489;MQ=221.29;MQ0=0;MQRankSum=2.223;QD=10.78;ReadPosRankSum=4.443 GT:AD:DP:GQ:PL 0/1:22,19:41:99.0:335,0,664 1/1:15,234:250:99.0:5895,337,0 0/1:137,113:250:99.0:2421,0,3301 0/1:134,116:250:99.0:2262,0,3430 0/1:144,105:250:99.0:1929,0,3421 0/1:148,101:250:99.0:1778,0,3867 0/1:142,108:250:99.0:1999,0,3334 chr22 42526634 . T C 32.6 . AC=1;AF=0.071;AN=14;BaseQRankSum=1.147;DP=1225;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=50.0151;MQ=240.65;MQ0=0;MQRankSum=1.151;QD=1.3;ReadPosRankSum=1.276 GT:AD:DP:GQ:PL 0/1:21,4:25:71.04:71,0,702 0/0:187,2:189:99.0:0,481,6080 0/0:233,0:233:99.0:0,667,7351 0/0:230,0:230:99.0:0,667,7394 0/0:174,1:175:99.0:0,446,5469 0/0:194,2:196:99.0:0,498,6239 0/0:174,0:175:99.0:0,511,5ok testWrite (vcf.test.test_vcf.TestBcfToolsOutputWriter) ... 894 chr22 42526679 . G C 60.6 . AC=1;AF=0.071;AN=14;BaseQRankSum=-12.425;DP=1525;DS;Dels=0.09;FS=0.0;HRun=1;HaplotypeScore=331.3182;MQ=215.48;MQ0=0;MQRankSum=-14.68;QD=0.24;ReadPosRankSum=-13.323 GT:AD:DP:GQ:PL 0/0:23,0:23:66.17:0,66,829 0/1:175,56:232:99.0:99,0,4273 0/0:199,26:226:76.45:0,76,5104 0/0:196,37:233:41.98:0,42,5109 0/0:170,47:218:99.0:0,162,4505 0/0:188,36:224:99.0:0,230,4974 0/0:177,47:225:99.0:0,167,4592 chr22 42526694 rs1065852 G A 4420.63 . AC=2;AF=0.143;AN=14;BaseQRankSum=8.566;DB;DP=1529;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=117.6833;MQ=214.96;MQ0=0;MQRankSum=5.852;QD=8.84;ReadPosRankSum=1.454 GT:AD:DP:GQ:PL 0/0:29,0:29:81.24:0,81,1040 0/1:136,114:250:99.0:2333,0,3170 0/1:145,104:250:99.0:2087,0,2794 0/0:250,0:250:99.0:0,586,6963 0/0:247,2:250:99.0:0,497,6185 0/0:248,2:250:99.0:0,544,6640 0/0:250,0:250:99.0:0,571,6444 chr22 42527471 rs28633410 T C 26831.16 . AC=10;AF=0.833;AN=12;BaseQRankSum=-1.092;DB;DP=1501;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=79.3853;MQ=176.86;MQ0=0;MQRankSum=-2.644;QD=17.89;ReadPosRankSum=2.185 GT:AD:DP:GQ:PL ./.:.:.:.:. 1/1:1,249:250:99.0:5741,478,0 0/1:102,148:250:99.0:3026,0,1748 0/1:115,132:250:99.0:2716,0,1896 1/1:1,249:250:99.0:5040,392,0 1/1:1,248:250:99.0:5109,427,0 1/1:4,245:249:99.0:5199,306,0 chr22 42527533 rs28624811 A G 13619.46 . AC=7;AF=0.583;AN=12;BaseQRankSum=-8.893;DB;DP=1501;DS;Dels=0.01;FS=0.0;HRun=1;HaplotypeScore=86.1948;MQ=179.18;MQ0=0;MQRankSum=0.472;QD=9.08;ReadPosRankSum=0.778 GT:AD:DP:GQ:PL ./.:.:.:.:. 1/1:2,241:243:99.0:4171,416,0 0/1:113,132:245:99.0:2000,0,2018 0/1:120,126:246:99.0:1781,0,1970 0/1:131,118:249:99.0:1885,0,1784 0/1:122,126:248:99.0:1893,0,1807 0/1:122,127:249:99.0:1890,0,2119 chr22 42527793 rs1080989 C T 3454.66 . AC=2;AF=0.167;AN=12;BaseQRankSum=-3.007;DB;DP=1074;DS;Dels=0.01;FS=0.0;HRun=1;HaplotypeScore=75.7865;MQ=209.0;MQ0=0;MQRankSum=3.014;QD=9.36;ReadPosRankSum=0.618 GT:AD:DP:GQ:PL ./.:.:.:.:. 0/1:72,90:162:99.0:1699,0,1767 0/1:103,96:202:99.0:1756,0,2532 0/0:188,0:188:99.0:0,526,5889 0/0:160,0:160:99.0:0,457,4983 0/0:197,0:198:99.0:0,544,6100 0/0:156,0:156:99.0:0,439,5041 chr22 42527891 . T A 109.83 . AC=5;AF=0.417;AN=12;BaseQRankSum=11.235;DP=1500;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=638.4601;MQ=166.82;MQ0=0;MQRankSum=1.444;QD=0.09;ReadPosRankSum=0.839 GT:AD:DP:GQ:PL ./.:.:.:.:. 0/1:238,7:248:13.7:14,0,38 0/0:246,3:250:5.97:0,6,45 0/1:239,11:250:31.42:31,0,54 0/1:232,16:250:49.09:49,0,76 0/1:233,14:249:52.1:52,0,53 0/1:238,11:250:12.71:13,0,36 ##fileformat=VCFv4.1 ##samtoolsVersion=0.1.18 (r982:295) ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT sample MT 1 . G . 283 . DP=245;DP4=240,0,0,0;MQ=30;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 2 . A . 283 . DP=250;DP4=247,0,0,0;MQ=31;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 3 . T . 283 . DP=253;DP4=252,0,0,0;MQ=31;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 4 . C . 283 . DP=257;DP4=253,0,0,0;MQ=32;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 5 . A . 283 . DP=263;DP4=258,0,0,0;MQ=32;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 6 . C . 283 . DP=268;DP4=259,0,0,0;MQ=33;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 7 . A . 283 . DP=272;DP4=265,0,2,0;MQ=34;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.9e-05,0.32,1.0;VDB=0.0111 PL 0 MT 8 . G . 283 . DP=275;DP4=272,0,0,0;MQ=34;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 9 . G . 283 . DP=276;DP4=266,0,1,0;MQ=34;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.006,0.36,0.13 PL 0 MT 10 . T . 283 . DP=277;DP4=269,0,1,0;MQ=34;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,3.7e-05,0.36,1.0;VDB=0.0 PL 0 MT 11 . C . 283 . DP=279;DP4=274,0,1,0;MQ=34;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0031,0.36,0.12 PL 0 MT 12 . T . 283 . DP=286;DP4=284,0,0,0;MQ=35;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 13 . A . 283 . DP=289;DP4=281,0,0,0;MQ=36;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 14 . T . 283 . DP=290;DP4=288,0,0,0;MQ=36;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 15 . C . 283 . DP=290;DP4=280,0,0,0;MQ=36;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 16 . A . 283 . DP=293;DP4=290,0,0,0;MQ=36;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 17 . C . 283 . DP=297;DP4=290,0,0,0;MQ=36;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0111 PL 0 MT 18 . C . 283 . DP=298;DP4=284,0,0,0;MQ=37;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 19 . C . 283 . DP=301;DP4=293,0,1,0;MQ=37;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.0,0.32,0.38;VDB=0.0111 PL 0 MT 20 . T . 283 . DP=311;DP4=307,0,0,0;MQ=37;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 21 . A . 283 . DP=311;DP4=305,0,0,0;MQ=38;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 22 . T . 283 . DP=305;DP4=303,0,0,0;MQ=38;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 23 . T . 283 . DP=309;DP4=305,0,0,0;MQ=38;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 24 . A . 283 . DP=309;DP4=301,0,0,0;MQ=39;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 25 . A . 283 . DP=308;DP4=302,0,1,0;MQ=39;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.2e-09,0.28,1.0 PL 0 MT 26 . C . 283 . DP=309;DP4=302,0,0,0;MQ=39;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 27 . C . 283 . DP=307;DP4=293,0,0,0;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 28 . A . 283 . DP=309;DP4=305,0,0,0;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 29 . C . 283 . DP=308;DP4=302,0,0,0;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 30 . T . 283 . DP=305;DP4=303,0,0,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 31 . C . 283 . DP=302;DP4=293,0,0,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 32 . A . 283 . DP=303;DP4=294,0,0,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 33 . C . 283 . DP=300;DP4=287,0,0,0;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 34 . G . 280 . DP=296;DP4=288,0,0,0;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 35 . G . 283 . DP=296;DP4=280,0,0,0;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0111 PL 0 MT 36 . G . 283 . DP=291;DP4=272,0,0,0;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 37 . A . 283 . DP=290;DP4=276,0,1,0;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00038,0.22,1.0;VDB=0.0212 PL 0 MT 38 . G . 283 . DP=288;DP4=282,0,0,0;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 39 . C . 283 . DP=289;DP4=264,0,2,0;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,8.3e-11,1.0,1.0;VDB=0.004 PL 0 MT 40 . T . 283 . DP=288;DP4=285,0,0,0;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 41 . C . 283 . DP=284;DP4=276,0,0,0;MQ=45;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 42 . T . 283 . DP=279;DP4=277,0,0,0;MQ=45;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 43 . C . 283 . DP=279;DP4=268,0,0,0;MQ=46;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 44 . C . 283 . DP=280;DP4=265,0,1,0;MQ=46;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0064,0.17,1.0 PL 0 MT 45 . A . 283 . DP=279;DP4=272,0,0,0;MQ=47;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 46 . T . 283 . DP=279;DP4=276,0,0,0;MQ=47;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 47 . G . 283 . DP=280;DP4=277,0,0,0;MQ=47;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 48 . C . 283 . DP=281;DP4=271,0,0,0;MQ=48;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 49 . A . 283 . DP=278;DP4=272,0,0,0;MQ=48;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0051 PL 0 MT 50 . T . 283 . DP=276;DP4=274,0,0,0;MQ=48;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 51 . T . 283 . DP=271;DP4=261,0,0,0;MQ=49;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 52 . T . 283 . DP=271;DP4=262,0,0,0;MQ=49;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 53 . G . 283 . DP=273;DP4=271,0,0,0;MQ=49;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 54 . G . 283 . DP=274;DP4=264,0,0,0;MQ=49;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 55 . T . 283 . DP=271;DP4=268,0,0,0;MQ=50;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 56 . A . 283 . DP=274;DP4=266,0,0,0;MQ=50;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 57 . T . 283 . DP=272;DP4=270,0,0,0;MQ=50;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 58 . T . 283 . DP=273;DP4=266,0,0,0;MQ=50;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 59 . T . 283 . DP=277;DP4=272,0,0,0;MQ=50;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 60 . T . 283 . DP=279;DP4=272,0,0,0;MQ=50;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 61 . C . 283 . DP=285;DP4=275,0,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 62 . G . 283 . DP=285;DP4=278,0,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.3e-08,0.097,0.066 PL 0 MT 63 . T . 283 . DP=285;DP4=285,0,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 64 . C . 283 . DP=283;DP4=276,0,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 65 . T . 283 . DP=277;DP4=277,0,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 66 . G . 283 . DP=276;DP4=274,0,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 67 . G . 283 . DP=275;DP4=264,0,0,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 68 . G . 283 . DP=281;DP4=265,0,0,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 69 . G . 283 . DP=288;DP4=269,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 70 . G . 283 . DP=296;DP4=275,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 71 . G . 283 . DP=300;DP4=272,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 72 . T . 283 . DP=301;DP4=285,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0367 PL 0 MT 73 . A . 283 . DP=295;DP4=283,0,1,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0066,1.0,1.0 PL 0 MT 74 . T . 283 . DP=298;DP4=298,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 75 . G . 283 . DP=300;DP4=299,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 76 . C . 283 . DP=304;DP4=281,0,2,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,8.3e-13,1.0,1.0;VDB=0.0342 PL 0 MT 77 . A . 283 . DP=303;DP4=293,0,1,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00064,0.019,0.25;VDB=0.02 PL 0 MT 78 . C . 283 . DP=302;DP4=283,0,3,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,4.1e-13,0.21,0.36;VDB=0.0026 PL 0 MT 79 . G . 283 . DP=301;DP4=285,0,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 80 . C . 283 . DP=308;DP4=286,0,1,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,9.8e-07,0.0098,0.14;VDB=0.0217 PL 0 MT 81 . G . 282 . DP=314;DP4=302,0,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 82 . A . 283 . DP=313;DP4=296,0,2,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.013,0.069,0.1;VDB=0.0049 PL 0 MT 83 . T . 283 . DP=316;DP4=313,0,2,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0029,1.0,1.0;VDB=0.02 PL 0 MT 84 . A . 283 . DP=316;DP4=302,0,1,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.3e-05,0.0044,1.0 PL 0 MT 85 . G . 283 . DP=314;DP4=314,0,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 86 . C . 283 . DP=318;DP4=297,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0198 PL 0 MT 87 . A . 283 . DP=324;DP4=316,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 88 . T . 283 . DP=326;DP4=325,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 89 . T . 283 . DP=328;DP4=313,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.3e-08,1.0,0.064 PL 0 MT 90 . G . 283 . DP=329;DP4=326,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0193 PL 0 MT 91 . C . 283 . DP=328;DP4=310,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,4.2e-05,1.0,0.37 PL 0 MT 92 . G . 278 . DP=327;DP4=314,0,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.17,1.0,0.2;VDB=0.0237 PL 0 MT 93 . A . 283 . DP=328;DP4=310,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 94 . G . 283 . DP=327;DP4=327,0,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 95 . A . 283 . DP=323;DP4=308,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,4.8e-05,0.002,1.0 PL 0 MT 96 . C . 283 . DP=323;DP4=305,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.17,1.0,1.0 PL 0 MT 97 . G . 275 . DP=321;DP4=311,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 98 . C . 283 . DP=322;DP4=301,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0006 PL 0 MT 99 . T . 283 . DP=327;DP4=327,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 100 . G . 283 . DP=332;DP4=332,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 101 . G . 283 . DP=332;DP4=306,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 102 . A . 283 . DP=331;DP4=290,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.005 PL 0 MT 103 . G . 283 . DP=329;DP4=321,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0342 PL 0 MT 104 . C . 283 . DP=330;DP4=273,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0026,1.0,0.047;VDB=0.0003 PL 0 MT 105 . C . 283 . DP=338;DP4=302,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 106 . G . 283 . DP=343;DP4=314,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 107 . G . 283 . DP=344;DP4=300,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 108 . A . 283 . DP=347;DP4=305,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0302 PL 0 MT 109 . G . 283 . DP=348;DP4=344,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 110 . C . 283 . DP=341;DP4=279,0,2,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,6.4e-06,1.4e-08,1.0;VDB=0.0445 PL 0 MT 111 . A . 283 . DP=343;DP4=321,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0233 PL 0 MT 112 . C . 283 . DP=348;DP4=300,0,3,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,3.2e-08,7.4e-07,0.16;VDB=0.0169 PL 0 MT 113 . C . 283 . DP=350;DP4=307,0,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,4.8e-08,1.0,0.38;VDB=0.0252 PL 0 MT 114 . C . 283 . DP=351;DP4=307,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 115 . T . 283 . DP=351;DP4=346,0,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0025 PL 0 MT 116 . A . 283 . DP=352;DP4=317,0,3,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,8.3e-07,0.0073,0.45;VDB=0.0183 PL 0 MT 117 . T . 283 . DP=355;DP4=351,0,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0025 PL 0 MT 118 . G . 283 . DP=352;DP4=348,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0306 PL 0 MT 119 . T . 283 . DP=353;DP4=345,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.005,1.0,1.0;VDB=0.0335 PL 0 MT 120 . C . 283 . DP=354;DP4=331,0,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00033,1.0,0.14;VDB=0.044 PL 0 MT 121 . G . 283 . DP=356;DP4=311,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 122 . C . 283 . DP=353;DP4=304,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0064,1.0,0.29;VDB=0.0237 PL 0 MT 123 . A . 283 . DP=357;DP4=332,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0141 PL 0 MT 124 . G . 283 . DP=357;DP4=353,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 125 . T . 283 . DP=359;DP4=347,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0037,1.0,1.0;VDB=0.0302 PL 0 MT 126 . A . 283 . DP=360;DP4=327,0,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00072,0.0069,0.13;VDB=0.0215 PL 0 MT 127 . T . 283 . DP=358;DP4=355,0,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,9.7e-05,5e-08,0.14;VDB=0.0245 PL 0 MT 128 . C . 283 . DP=360;DP4=336,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0335 PL 0 MT 129 . T . 283 . DP=360;DP4=356,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00053,0.0013,1.0 PL 0 MT 130 . G . 283 . DP=357;DP4=355,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0141 PL 0 MT 131 . T . 283 . DP=360;DP4=351,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0057 PL 0 MT 132 . C . 283 . DP=359;DP4=338,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0367 PL 0 MT 133 . T . 283 . DP=358;DP4=353,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00063,0.0012,1.0;VDB=0.0033 PL 0 MT 134 . T . 283 . DP=357;DP4=326,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 135 . T . 283 . DP=356;DP4=322,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 136 . G . 283 . DP=358;DP4=353,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 137 . A . 283 . DP=358;DP4=317,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0044 PL 0 MT 138 . T . 283 . DP=358;DP4=355,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.025 PL 0 MT 139 . T . 283 . DP=360;DP4=328,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 140 . C . 283 . DP=356;DP4=338,0,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0065,2.6e-06,0.23;VDB=0.0367 PL 0 MT 141 . C . 283 . DP=360;DP4=321,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.012,1.0,0.13 PL 0 MT 142 . T . 283 . DP=362;DP4=357,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0342 PL 0 MT 143 . G . 283 . DP=360;DP4=353,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0017,1.0,0.18;VDB=0.0183 PL 0 MT 144 . C . 283 . DP=364;DP4=325,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0101 PL 0 MT 145 . C . 283 . DP=363;DP4=330,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0063 PL 0 MT 146 . T . 283 . DP=361;DP4=358,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0207 PL 0 MT 147 . C . 283 . DP=362;DP4=357,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 148 . A . 283 . DP=363;DP4=347,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0051 PL 0 MT 149 . T . 283 . DP=363;DP4=363,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 150 . C . 283 . DP=363;DP4=350,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0168 PL 0 MT 151 . C . 283 . DP=359;DP4=337,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,6.7e-05,1.0,0.077 PL 0 MT 152 . T . 283 . DP=355;DP4=352,0,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.028,1.0,1.0;VDB=0.0237 PL 0 MT 153 . A . 283 . DP=354;DP4=327,0,5,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.001,0.15,0.009;VDB=0.0115 PL 0 MT 154 . T . 283 . DP=353;DP4=349,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0051 PL 0 MT 155 . T . 283 . DP=357;DP4=343,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 156 . A . 283 . DP=357;DP4=337,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.021 PL 0 MT 157 . T . 283 . DP=356;DP4=355,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 158 . T . 283 . DP=351;DP4=333,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 159 . T . 283 . DP=343;DP4=321,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 160 . A . 283 . DP=337;DP4=313,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 161 . T . 283 . DP=336;DP4=334,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,7.6e-06,1.0,1.0 PL 0 MT 162 . C . 283 . DP=333;DP4=314,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0245 PL 0 MT 163 . G . 278 . DP=328;DP4=308,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.02 PL 0 MT 164 . C . 283 . DP=328;DP4=306,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0212 PL 0 MT 165 . A . 283 . DP=330;DP4=319,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0026,1.0,0.18;VDB=0.0167 PL 0 MT 166 . C . 283 . DP=332;DP4=308,0,2,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.6e-07,1.0,1.0;VDB=0.0134 PL 0 MT 167 . C . 283 . DP=330;DP4=310,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,3e-05,1.0,1.0 PL 0 MT 168 . T . 283 . DP=329;DP4=329,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 169 . A . 283 . DP=332;DP4=314,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 170 . C . 283 . DP=327;DP4=307,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0013,1.0,1.0;VDB=0.0144 PL 0 MT 171 . G . 283 . DP=326;DP4=315,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 172 . T . 283 . DP=325;DP4=323,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0086 PL 0 MT 173 . T . 283 . DP=324;DP4=311,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 174 . C . 283 . DP=321;DP4=307,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.4e-06,1.0,0.32;VDB=0.0227 PL 0 MT 175 . A . 283 . DP=323;DP4=312,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0183 PL 0 MT 176 . A . 283 . DP=320;DP4=306,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00011,1.0,1.0 PL 0 MT 177 . T . 283 . DP=317;DP4=317,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 178 . A . 283 . DP=321;DP4=313,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 179 . T . 283 . DP=322;DP4=322,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 180 . T . 283 . DP=324;DP4=307,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 181 . A . 283 . DP=323;DP4=311,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 182 . C . 283 . DP=323;DP4=302,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.12,1.7e-06,1.0;VDB=0.016 PL 0 MT 183 . A . 283 . DP=326;DP4=318,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0096 PL 0 MT 184 . G . 283 . DP=328;DP4=325,0,2,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1e-05,1.0,0.37;VDB=0.0128 PL 0 MT 185 . G . 283 . DP=328;DP4=298,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,4.8e-06,1.0,1.0 PL 0 MT 186 . C . 283 . DP=324;DP4=295,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0238 PL 0 MT 187 . G . 283 . DP=325;DP4=305,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 188 . A . 283 . DP=326;DP4=301,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0032,1.0,1.0;VDB=0.0335 PL 0 MT 189 . A . 283 . DP=324;DP4=300,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 190 . C . 283 . DP=322;DP4=298,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,3.9e-06,7.9e-07,1.0;VDB=0.0192 PL 0 MT 191 . A . 283 . DP=324;DP4=313,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0009 PL 0 MT 192 . T . 283 . DP=321;DP4=320,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 193 . A . 283 . DP=329;DP4=307,0,2,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.003,1.0,0.11;VDB=0.0299 PL 0 MT 194 . C . 283 . DP=332;DP4=301,0,2,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,3e-05,1.0,0.071;VDB=0.0429 PL 0 MT 195 . T . 283 . DP=329;DP4=327,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0121 PL 0 MT 196 . T . 283 . DP=326;DP4=308,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 197 . A . 283 . DP=328;DP4=311,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 198 . C . 283 . DP=329;DP4=310,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.3e-05,1.0,0.25;VDB=0.0187 PL 0 MT 199 . T . 283 . DP=329;DP4=327,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 200 . A . 283 . DP=333;DP4=321,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.022 PL 0 MT 201 . A . 283 . DP=331;DP4=315,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 202 . A . 283 . DP=332;DP4=311,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 203 . G . 283 . DP=327;DP4=324,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0021,1.0,0.093;VDB=0.0123 PL 0 MT 204 . T . 283 . DP=326;DP4=318,0,2,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.1e-05,9.1e-07,0.23;VDB=0.0025 PL 0 MT 205 . G . 283 . DP=329;DP4=326,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 206 . T . 283 . DP=331;DP4=322,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00013,2.1e-07,0.23;VDB=0.0044 PL 0 MT 207 . G . 283 . DP=333;DP4=330,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 208 . T . 283 . DP=332;DP4=332,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 209 . T . 283 . DP=332;DP4=318,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 210 . A . 283 . DP=332;DP4=319,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.9e-05,2.5e-06,1.0 PL 0 MT 211 . A . 283 . DP=334;DP4=324,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 212 . T . 283 . DP=335;DP4=335,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 213 . T . 283 . DP=335;DP4=325,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 214 . A . 283 . DP=338;DP4=330,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 215 . A . 283 . DP=333;DP4=323,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 216 . T . 283 . DP=331;DP4=331,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 217 . T . 283 . DP=332;DP4=324,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 218 . A . 283 . DP=332;DP4=327,0,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,3.1e-12,0.00014,0.25;VDB=0.0072 PL 0 MT 219 . A . 283 . DP=331;DP4=324,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 220 . T . 283 . DP=331;DP4=330,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,4.3e-07,0.00018,0.4 PL 0 MT 221 . G . 283 . DP=330;DP4=328,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 222 . C . 283 . DP=333;DP4=320,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0248 PL 0 MT 223 . T . 283 . DP=329;DP4=327,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0198 PL 0 MT 224 . T . 283 . DP=328;DP4=320,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 225 . G . 283 . DP=331;DP4=330,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 226 . T . 283 . DP=329;DP4=327,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 227 . A . 283 . DP=324;DP4=316,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 228 . G . 283 . DP=321;DP4=320,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2e-06,0.00026,1.0 PL 0 MT 229 . G . 283 . DP=318;DP4=304,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 230 . A . 283 . DP=320;DP4=311,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 231 . C . 283 . DP=319;DP4=309,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 232 . A . 283 . DP=317;DP4=309,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 233 . T . 283 . DP=319;DP4=319,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 234 . A . 283 . DP=314;DP4=308,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 235 . A . 283 . DP=314;DP4=307,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 236 . T . 283 . DP=318;DP4=317,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,4.1e-10,1.0,0.44 PL 0 MT 237 . A . 283 . DP=320;DP4=313,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00077,1.0,0.1;VDB=0.0168 PL 0 MT 238 . A . 283 . DP=318;DP4=313,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 239 . T . 283 . DP=316;DP4=316,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 240 . A . 283 . DP=315;DP4=310,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 241 . A . 283 . DP=314;DP4=309,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.036,1.0,1.0;VDB=0.016 PL 0 MT 242 . C . 283 . DP=314;DP4=305,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0183 PL 0 MT 243 . A . 283 . DP=316;DP4=313,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 244 . A . 283 . DP=320;DP4=314,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 245 . T . 283 . DP=316;DP4=316,0,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 246 . T . 283 . DP=319;DP4=311,0,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 247 . G . 283 . DP=323;DP4=322,0,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 248 . A . 283 . DP=327;DP4=320,0,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 249 . A . 283 . DP=328;DP4=318,0,1,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.7e-07,0.00026,1.0 PL 0 MT 250 . T . 283 . DP=326;DP4=324,0,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 251 . G . 283 . DP=323;DP4=323,0,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 252 . T . 283 . DP=324;DP4=322,0,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0217 PL 0 MT 253 . C . 283 . DP=328;DP4=322,0,1,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,5.7e-05,1.0,0.41;VDB=0.0158 PL 0 MT 254 . T . 283 . DP=324;DP4=324,0,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 255 . G . 283 . DP=319;DP4=318,0,1,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.7e-08,1.0,0.033 PL 0 MT 256 . C . 283 . DP=312;DP4=303,0,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 257 . A . 283 . DP=312;DP4=307,0,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 258 . C . 283 . DP=313;DP4=303,0,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 259 . A . 283 . DP=312;DP4=300,0,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0069 PL 0 MT 260 . G . 283 . DP=309;DP4=307,0,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 261 . C . 283 . DP=303;DP4=290,0,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 262 . C . 283 . DP=303;DP4=286,0,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 263 . A G 210 . DP=302;DP4=0,0,289,0;MQ=56;FQ=-282.0;AF1=1.0;AC1=2.0;VDB=0.0417 GT:PL:GQ 1/1:243,255,0:99 MT 264 . C . 283 . DP=309;DP4=290,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.018 PL 0 MT 265 . T . 283 . DP=311;DP4=310,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 266 . T . 283 . DP=311;DP4=298,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 267 . T . 283 . DP=310;DP4=293,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 268 . C . 283 . DP=308;DP4=298,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0214 PL 0 MT 269 . C . 283 . DP=307;DP4=293,0,2,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.4e-10,1.0,0.1;VDB=0.0183 PL 0 MT 270 . A . 283 . DP=306;DP4=300,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 271 . C . 283 . DP=307;DP4=298,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 272 . A . 283 . DP=308;DP4=300,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 273 . C . 283 . DP=306;DP4=296,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 274 . A . 283 . DP=303;DP4=294,0,1,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0016,0.05,1.0 PL 0 MT 275 . G . 283 . DP=308;DP4=306,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 276 . A . 283 . DP=308;DP4=289,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0253 PL 0 MT 277 . C . 283 . DP=307;DP4=291,0,1,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.04,1.0,0.18;VDB=0.0163 PL 0 MT 278 . A . 283 . DP=305;DP4=295,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0144 PL 0 MT 279 . T . 283 . DP=303;DP4=303,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 280 . C . 283 . DP=300;DP4=296,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 281 . A . 283 . DP=298;DP4=294,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 282 . T . 283 . DP=298;DP4=298,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 283 . A . 283 . DP=292;DP4=281,0,2,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.5e-06,0.094,0.37;VDB=0.0183 PL 0 MT 284 . A . 283 . DP=287;DP4=278,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 285 . C . 283 . DP=283;DP4=278,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0121 PL 0 MT 286 . A . 283 . DP=279;DP4=274,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 287 . A . 283 . DP=273;DP4=265,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 288 . A . 283 . DP=270;DP4=260,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 289 . A . 283 . DP=267;DP4=252,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0106 PL 0 MT 290 . A . 283 . DP=261;DP4=250,0,0,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0133 PL 0 MT 291 . A . 283 . DP=259;DP4=247,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 292 . T . 283 . DP=255;DP4=255,0,0,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 293 . T . 283 . DP=259;DP4=246,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 294 . T . 283 . DP=257;DP4=245,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 295 . C . 283 . DP=254;DP4=246,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 296 . C . 283 . DP=253;DP4=234,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 297 . A . 283 . DP=253;DP4=244,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0099 PL 0 MT 298 . C . 283 . DP=253;DP4=236,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0168 PL 0 MT 299 . C . 283 . DP=251;DP4=229,0,1,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0068,1.0,1.0 PL 0 MT 300 . A . 283 . DP=249;DP4=237,0,0,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 301 . A . 283 . DP=248;DP4=223,0,1,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.3e-05,0.058,0.12;VDB=0.0369 PL 0 MT 302 . A . 283 . DP=248;DP4=221,0,1,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,8.3e-05,0.057,0.14;VDB=0.0227 PL 0 MT 302 . ACCCCCCC . 84.6 . DP=248;DP4=26,0,2,0;MQ=47;FQ=-88.5;AF1=0.0;AC1=0.0;PV4=1.0,1.0,1.0,0.21;INDEL;VDB=0.0435 PL 0 MT 303 . C . 283 . DP=244;DP4=205,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 304 . C . 283 . DP=242;DP4=197,0,1,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0027,0.0048,1.0;VDB=0.01 PL 0 MT 304 . C . 85.5 . DP=242;DP4=59,0,1,0;MQ=53;FQ=-197.0;AF1=0.0;AC1=0.0;PV4=1.0,0.22,1.0,1.0;INDEL;VDB=0.0435 PL 0 MT 305 . C . 283 . DP=250;DP4=193,0,2,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00014,1.0,0.3;VDB=0.0158 PL 0 MT 306 . C . 283 . DP=252;DP4=194,0,2,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00023,1.0,0.11;VDB=0.0111 PL 0 MT 307 . C . 283 . DP=252;DP4=190,0,3,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2e-06,0.0019,0.34;VDB=0.0284 PL 0 MT 308 . C . 283 . DP=255;DP4=175,0,2,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.9e-06,1.0,0.11;VDB=0.009 PL 0 MT 309 . C . 283 . DP=257;DP4=176,0,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0001 PL 0 MT 310 . T . 283 . DP=260;DP4=204,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0268 PL 0 MT 311 . C . 105 . DP=265;DP4=25,0,0,0;MQ=53;FQ=-102.0;AF1=0.0;AC1=0.0;VDB=0.0195 PL 0 MT 312 . C . 102 . DP=271;DP4=23,1,0,0;MQ=58;FQ=-99.0;AF1=0.0;AC1=0.0 PL 0 MT 313 . C . 132 . DP=282;DP4=33,1,0,0;MQ=59;FQ=-129.0;AF1=0.0;AC1=0.0 PL 0 MT 314 . C . 138 . DP=280;DP4=35,1,0,0;MQ=58;FQ=-135.0;AF1=0.0;AC1=0.0 PL 0 MT 315 . C . 147 . DP=281;DP4=38,1,0,0;MQ=58;FQ=-144.0;AF1=0.0;AC1=0.0 PL 0 MT 316 . G . 255 . DP=270;DP4=199,1,2,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0058,0.075,1.0;VDB=0.0233 PL 0 MT 317 . C . 283 . DP=278;DP4=221,2,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0227 PL 0 MT 318 . T . 283 . DP=286;DP4=267,2,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0367 PL 0 MT 319 . T . 283 . DP=287;DP4=236,2,2,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,5.5e-08,0.011,0.33;VDB=0.0449 PL 0 MT 320 . C . 283 . DP=288;DP4=263,3,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0233 PL 0 MT 321 . T . 283 . DP=289;DP4=270,3,1,1;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.029,0.00028,0.12,0.0089;VDB=0.0302 PL 0 MT 322 . G . 283 . DP=290;DP4=258,4,4,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,6.5e-05,1.4e-06,1.0;VDB=0.0093 PL 0 MT 323 . G . 283 . DP=291;DP4=212,5,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0081 PL 0 MT 324 . C . 283 . DP=292;DP4=231,5,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0031,1.0,0.26;VDB=0.0099 PL 0 MT 325 . C . 283 . DP=295;DP4=236,10,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,8.7e-06,2.3e-05,0.47;VDB=0.0128 PL 0 MT 326 . A . 283 . DP=298;DP4=257,14,3,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0039,1.0,1.0;VDB=0.0449 PL 0 MT 327 . C . 283 . DP=307;DP4=238,18,2,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00016,0.077,0.41;VDB=0.0302 PL 0 MT 328 . A . 283 . DP=311;DP4=258,19,1,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.023,1.0,1.0;VDB=0.0115 PL 0 MT 329 . G . 283 . DP=316;DP4=279,16,3,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00045,0.017,1.0;VDB=0.0335 PL 0 MT 330 . C . 283 . DP=322;DP4=237,22,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0115 PL 0 MT 331 . A . 283 . DP=332;DP4=268,25,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0302 PL 0 MT 332 . C . 283 . DP=337;DP4=257,28,1,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00057,0.00021,0.22;VDB=0.0104 PL 0 MT 333 . T . 283 . DP=339;DP4=305,24,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0005 PL 0 MT 334 . T . 283 . DP=349;DP4=275,31,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0106 PL 0 MT 335 . A . 283 . DP=356;DP4=283,32,1,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.037,0.014,1.0;VDB=0.0057 PL 0 MT 336 . A . 283 . DP=361;DP4=279,34,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 337 . A . 283 . DP=359;DP4=278,40,1,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.16,1.0,0.093;VDB=0.0022 PL 0 MT 338 . C . 283 . DP=359;DP4=267,41,3,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,3.1e-06,1.0,1.0;VDB=0.0302 PL 0 MT 339 . A . 283 . DP=365;DP4=295,45,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0242 PL 0 MT 340 . C . 283 . DP=372;DP4=284,51,1,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00047,0.025,1.0;VDB=0.0169 PL 0 MT 341 . A . 283 . DP=378;DP4=299,54,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0325 PL 0 MT 342 . T . 283 . DP=385;DP4=321,47,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0324 PL 0 MT 343 . C . 283 . DP=387;DP4=298,62,2,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,9.5e-06,1.0,0.48;VDB=0.0169 PL 0 MT 344 . T . 283 . DP=392;DP4=319,49,1,1;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.25,6.8e-05,0.16,1.0;VDB=0.0394 PL 0 MT 345 . C . 283 . DP=403;DP4=314,70,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 346 . T . 283 . DP=412;DP4=335,70,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0124 PL 0 MT 347 . G . 283 . DP=418;DP4=290,71,5,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.59,6.4e-09,0.002,1.0;VDB=0.0335 PL 0 MT 348 . C . 283 . DP=429;DP4=300,80,1,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0017,1.0,0.19 PL 0 MT 349 . C . 283 . DP=441;DP4=312,87,1,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.7e-05,0.043,1.0;VDB=0.0396 PL 0 MT 350 . A . 283 . DP=451;DP4=333,83,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0115 PL 0 MT 351 . A . 283 . DP=456;DP4=322,89,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0445 PL 0 MT 352 . A . 283 . DP=458;DP4=321,98,0,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0245 PL 0 MT 353 . C . 283 . DP=467;DP4=317,100,0,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0449 PL 0 MT 354 . C . 283 . DP=481;DP4=328,104,1,1;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.43,0.00091,0.012,1.0;VDB=0.0447 PL 0 MT 355 . C . 283 . DP=483;DP4=339,104,0,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 356 . C . 283 . DP=494;DP4=340,122,1,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.023,1.0,0.026;VDB=0.0166 PL 0 MT 357 . A . 283 . DP=500;DP4=353,115,2,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.4e-06,1.0,1.0;VDB=0.0073 PL 0 MT 358 . A . 283 . DP=503;DP4=357,115,0,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0063 PL 0 MT 359 . A . 283 . DP=507;DP4=348,119,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0146 PL 0 MT 360 . A . 283 . DP=515;DP4=355,125,1,1;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.45,2.4e-06,0.29,0.0068;VDB=0.009 PL 0 MT 361 . A . 283 . DP=516;DP4=359,134,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.003 PL 0 MT 362 . C . 283 . DP=522;DP4=361,138,1,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,5.4e-06,0.078,1.0 PL 0 MT 363 . A . 283 . DP=528;DP4=380,128,1,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.2e-05,0.072,0.067;VDB=0.0185 PL 0 MT 364 . A . 283 . DP=540;DP4=370,143,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 365 . A . 283 . DP=552;DP4=379,152,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0112 PL 0 MT 366 . G . 283 . DP=553;DP4=385,146,1,2;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.19,5.9e-09,0.12,1.0;VDB=0.0429 PL 0 MT 367 . A . 283 . DP=560;DP4=386,146,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 368 . A . 283 . DP=566;DP4=388,156,2,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0066,0.32,0.38;VDB=0.0367 PL 0 MT 369 . C . 283 . DP=573;DP4=376,150,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0009 PL 0 MT 370 . C . 283 . DP=578;DP4=390,153,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 371 . C . 283 . DP=587;DP4=395,176,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.068,0.091,1.0;VDB=0.0369 PL 0 MT 372 . T . 283 . DP=597;DP4=415,162,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0063 PL 0 MT 373 . A . 283 . DP=607;DP4=413,169,2,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00013,1.0,1.0;VDB=0.0168 PL 0 MT 374 . A . 283 . DP=612;DP4=414,185,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0165 PL 0 MT 375 . C . 283 . DP=620;DP4=406,186,7,4;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.75,1.0,0.49,1.0;VDB=0.0394 PL 0 MT 376 . A . 283 . DP=631;DP4=423,191,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0302 PL 0 MT 377 . C . 283 . DP=641;DP4=421,192,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.5e-06,1.0,0.4;VDB=0.0342 PL 0 MT 378 . C . 283 . DP=656;DP4=432,204,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.12,0.093,1.0;VDB=0.0144 PL 0 MT 379 . A . 283 . DP=671;DP4=452,207,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0335 PL 0 MT 380 . G . 283 . DP=676;DP4=458,206,0,2;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.097,7.4e-09,0.0067,0.052;VDB=0.0193 PL 0 MT 381 . C . 283 . DP=686;DP4=456,209,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 382 . C . 283 . DP=691;DP4=462,216,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.9e-06,0.091,1.0 PL 0 MT 383 . T . 283 . DP=697;DP4=474,215,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.3e-08,1.0,0.33;VDB=0.0111 PL 0 MT 384 . A . 283 . DP=699;DP4=467,221,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,7.9e-07,1.0,0.032 PL 0 MT 385 . A . 283 . DP=702;DP4=465,221,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.071,1.0,0.23;VDB=0.027 PL 0 MT 386 . C . 283 . DP=707;DP4=464,223,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.022,1.0,0.064;VDB=0.0245 PL 0 MT 387 . C . 283 . DP=713;DP4=468,230,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2e-09,1.0,1.0 PL 0 MT 388 . A . 283 . DP=719;DP4=477,234,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 389 . G . 283 . DP=725;DP4=488,235,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 390 . A . 283 . DP=727;DP4=471,239,2,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.55,8.2e-09,0.34,1.0;VDB=0.0165 PL 0 MT 391 . T . 283 . DP=736;DP4=490,238,2,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,4.7e-07,0.34,1.0;VDB=0.0193 PL 0 MT 392 . T . 283 . DP=744;DP4=488,241,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.4e-09,1.0,1.0 PL 0 MT 393 . T . 283 . DP=746;DP4=486,241,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 394 . C . 283 . DP=750;DP4=496,250,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0202 PL 0 MT 395 . A . 283 . DP=746;DP4=492,247,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 396 . A . 283 . DP=752;DP4=480,252,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 397 . A . 283 . DP=755;DP4=479,258,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.8e-06,0.096,1.0;VDB=0.0215 PL 0 MT 398 . T . 283 . DP=759;DP4=495,253,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 399 . T . 283 . DP=763;DP4=488,256,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,3.9e-07,0.017,0.11 PL 0 MT 400 . T . 283 . DP=764;DP4=485,262,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0138 PL 0 MT 401 . T . 283 . DP=772;DP4=483,271,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 402 . A . 283 . DP=767;DP4=477,275,0,1;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.37,2.2e-06,0.093,1.0;VDB=0.019 PL 0 MT 403 . T . 283 . DP=767;DP4=484,268,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 404 . C . 283 . DP=771;DP4=478,284,0,1;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.37,4e-06,0.092,1.0 PL 0 MT 405 . T . 283 . DP=766;DP4=479,272,1,1;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.2e-21,1.0,0.19;VDB=0.0227 PL 0 MT 406 . T . 283 . DP=770;DP4=470,281,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 407 . T . 283 . DP=764;DP4=459,283,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 408 . T . 283 . DP=762;DP4=454,297,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 409 . G . 283 . DP=768;DP4=466,292,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 410 . G . 283 . DP=766;DP4=447,286,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0261 PL 0 MT 411 . C . 283 . DP=767;DP4=449,292,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 412 . G . 283 . DP=771;DP4=459,287,0,1;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.39,0.0013,1.0,0.029;VDB=0.0185 PL 0 MT 413 . G . 283 . DP=776;DP4=451,285,0,2;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.15,0.0059,0.025,1.0;VDB=0.0394 PL 0 MT 414 . T . 283 . DP=781;DP4=470,297,0,1;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.39,2.6e-05,1.0,0.061;VDB=0.0429 PL 0 MT 415 . A . 283 . DP=787;DP4=462,310,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 416 . T . 283 . DP=788;DP4=473,306,1,1;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,5.1e-12,0.31,1.0;VDB=0.0205 PL 0 MT 417 . G . 283 . DP=782;DP4=471,290,0,1;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.38,3.1e-08,0.079,1.0;VDB=0.0366 PL 0 MT 418 . C . 283 . DP=785;DP4=457,310,1,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,4.5e-08,1.0,0.013;VDB=0.0227 PL 0 MT 419 . A . 283 . DP=785;DP4=462,309,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0447 PL 0 MT 420 . C . 283 . DP=787;DP4=450,313,3,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.27,1.3e-11,0.11,1.0;VDB=0.0268 PL 0 MT 421 . T . 283 . DP=785;DP4=470,296,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 422 . T . 283 . DP=786;DP4=457,302,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 423 . T . 283 . DP=782;DP4=453,298,1,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.3e-08,0.073,1.0;VDB=0.0253 PL 0 MT 424 . T . 283 . DP=780;DP4=453,299,0,2;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.16,1.3e-11,1.0,0.043;VDB=0.021 PL 0 MT 425 . A . 283 . DP=781;DP4=449,296,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 426 . A . 283 . DP=782;DP4=455,310,0,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0067 PL 0 MT 427 . C . 283 . DP=778;DP4=447,311,3,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.27,2.2e-13,0.0044,1.0;VDB=0.0342 PL 0 MT 428 . A . 283 . DP=785;DP4=460,311,2,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.52,0.0039,0.014,1.0;VDB=0.0013 PL 0 MT 429 . G . 283 . DP=782;DP4=468,290,0,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 430 . T . 283 . DP=783;DP4=468,279,0,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0417 PL 0 MT 431 . C . 283 . DP=783;DP4=456,308,3,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.28,2.7e-07,0.25,0.48;VDB=0.0417 PL 0 MT 432 . A . 283 . DP=778;DP4=458,293,0,1;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.39,0.0053,1.0,0.074;VDB=0.0417 PL 0 MT 433 . C . 283 . DP=778;DP4=438,276,2,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.53,6.9e-09,0.011,1.0;VDB=0.0088 PL 0 MT 434 . C . 283 . DP=779;DP4=442,285,3,1;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,8.7e-16,1.0,0.0067;VDB=0.0367 PL 0 MT 435 . C . 283 . DP=775;DP4=447,282,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 436 . C . 283 . DP=773;DP4=436,286,3,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.28,1.7e-10,0.06,0.39;VDB=0.0233 PL 0 MT 437 . C . 283 . DP=773;DP4=444,285,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 438 . C . 283 . DP=772;DP4=449,298,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 439 . A . 283 . DP=773;DP4=448,284,1,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00018,1.0,1.0;VDB=0.0253 PL 0 MT 440 . A . 283 . DP=772;DP4=449,300,0,2;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.16,0.0016,1.0,0.27;VDB=0.0324 PL 0 MT 441 . C . 283 . DP=770;DP4=444,299,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 442 . T . 283 . DP=773;DP4=473,275,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0373 PL 0 MT 443 . A . 283 . DP=772;DP4=458,273,2,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.53,3.5e-09,0.18,0.012;VDB=0.0169 PL 0 MT 444 . A . 283 . DP=758;DP4=451,284,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0417 PL 0 MT 445 . C . 283 . DP=765;DP4=454,287,1,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00013,1.0,1.0;VDB=0.0124 PL 0 MT 446 . A . 283 . DP=763;DP4=465,283,0,1;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.38,1.0,1.0,1.0;VDB=0.0233 PL 0 MT 447 . C . 283 . DP=761;DP4=444,291,1,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.014,0.023,1.0;VDB=0.0121 PL 0 MT 448 . A . 283 . DP=768;DP4=459,293,1,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0033,0.025,1.0;VDB=0.0445 PL 0 MT 449 . T . 283 . DP=765;DP4=467,251,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0183 PL 0 MT 450 . T . 283 . DP=758;DP4=446,248,1,1;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00099,0.031,0.3;VDB=0.0242 PL 0 MT 451 . A . 283 . DP=766;DP4=458,292,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0166 PL 0 MT 452 . T . 283 . DP=761;DP4=467,250,0,1;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.35,6.8e-05,0.02,0.13 PL 0 MT 453 . T . 283 . DP=768;DP4=447,255,0,1;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.36,7e-06,1.0,0.074;VDB=0.0195 PL 0 MT 454 . T . 283 . DP=757;DP4=440,257,0,1;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.37,2.3e-05,1.0,1.0;VDB=0.0227 PL 0 MT 455 . T . 283 . DP=759;DP4=436,201,0,3;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.032,3.9e-07,0.22,0.48;VDB=0.0057 PL 0 MT 456 . C . 283 . DP=765;DP4=435,252,4,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.3,1.5e-10,0.0092,0.05;VDB=0.0018 PL 0 MT 457 . C . 283 . DP=765;DP4=437,252,2,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.54,8.3e-10,1.0,0.0021;VDB=0.0089 PL 0 MT 458 . C . 283 . DP=765;DP4=437,251,2,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.54,6.9e-06,1.0,1.0;VDB=0.0435 PL 0 MT 459 . C . 283 . DP=761;DP4=444,290,1,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00014,0.00041,0.49;VDB=0.0062 PL 0 MT 460 . T . 283 . DP=759;DP4=465,242,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0002 PL 0 MT 461 . C . 283 . DP=761;DP4=452,250,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0069 PL 0 MT 462 . C . 283 . DP=763;DP4=441,252,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 463 . C . 283 . DP=762;DP4=437,283,3,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.28,6.3e-06,0.16,0.39;VDB=0.0363 PL 0 MT 464 . A . 283 . DP=763;DP4=444,262,0,1;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.37,0.08,1.0,1.0;VDB=0.0367 PL 0 MT 465 . C . 283 . DP=762;DP4=453,290,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0215 PL 0 MT 466 . T . 283 . DP=758;DP4=465,244,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0115 PL 0 MT 467 . C . 283 . DP=757;DP4=460,246,0,1;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.35,2.1e-06,1.0,1.0;VDB=0.0343 PL 0 MT 468 . C . 283 . DP=754;DP4=440,251,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0175 PL 0 MT 469 . C . 283 . DP=755;DP4=445,293,1,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00029,0.0029,0.27;VDB=0.0096 PL 0 MT 470 . A . 283 . DP=762;DP4=446,296,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.02 PL 0 MT 471 . T . 283 . DP=759;DP4=463,256,0,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.36,0.001,0.0016,1.0;VDB=0.0232 PL 0 MT 472 . A . 283 . DP=757;DP4=448,287,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0027,0.002,0.16;VDB=0.0447 PL 0 MT 473 . C . 283 . DP=757;DP4=451,293,1,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.3e-07,0.033,1.0;VDB=0.0193 PL 0 MT 474 . T . 283 . DP=763;DP4=468,251,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0134 PL 0 MT 475 . A . 283 . DP=768;DP4=460,285,0,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.38,0.0041,0.0013,1.0;VDB=0.0268 PL 0 MT 476 . C . 283 . DP=768;DP4=462,292,0,2;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.15,1.3e-06,1.1e-05,1.0;VDB=0.02 PL 0 MT 477 . T . 283 . DP=772;DP4=474,257,0,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.35,0.00014,1.0,0.11;VDB=0.0242 PL 0 MT 478 . A . 283 . DP=772;DP4=462,253,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.54,8.5e-10,0.015,0.19;VDB=0.0054 PL 0 MT 479 . A . 283 . DP=773;DP4=458,298,1,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0012,1.0,0.038;VDB=0.0281 PL 0 MT 480 . T . 283 . DP=783;DP4=471,231,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0025 PL 0 MT 481 . C . 283 . DP=784;DP4=458,309,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.048,1.0,0.13;VDB=0.0217 PL 0 MT 482 . T . 283 . DP=783;DP4=460,259,2,2;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.62,0.0001,1.0,1.0;VDB=0.0335 PL 0 MT 483 . C . 283 . DP=791;DP4=460,322,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0077 PL 0 MT 484 . A . 283 . DP=792;DP4=457,324,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0225 PL 0 MT 485 . T . 283 . DP=799;DP4=467,258,0,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.36,0.064,1.0,1.0;VDB=0.0169 PL 0 MT 486 . C . 283 . DP=799;DP4=456,333,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 487 . A . 283 . DP=803;DP4=458,267,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 488 . A . 283 . DP=798;DP4=447,334,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.064,0.00075,1.0;VDB=0.0207 PL 0 MT 489 . T . 283 . DP=803;DP4=468,264,0,3;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.048,4.9e-06,0.042,0.021;VDB=0.0044 PL 0 MT 490 . A . 283 . DP=797;DP4=451,317,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.007,0.00036,0.4;VDB=0.0044 PL 0 MT 491 . C . 283 . DP=791;DP4=448,324,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 492 . A . 283 . DP=797;DP4=456,298,0,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.4,0.00027,0.0004,1.0;VDB=0.0156 PL 0 MT 493 . A . 283 . DP=798;DP4=457,282,0,3;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.056,0.00012,0.064,0.3;VDB=0.0115 PL 0 MT 494 . C . 283 . DP=804;DP4=444,277,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0156 PL 0 MT 495 . C . 283 . DP=814;DP4=460,288,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2e-05,1.0,0.27;VDB=0.0174 PL 0 MT 496 . C . 283 . DP=821;DP4=448,292,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.52,2e-06,1.0,0.11;VDB=0.0372 PL 0 MT 497 . C . 283 . DP=825;DP4=457,296,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.52,0.048,1.0,1.0;VDB=0.0207 PL 0 MT 498 . C . 283 . DP=828;DP4=460,304,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0253 PL 0 MT 499 . G . 283 . DP=831;DP4=469,285,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0037,1.0,0.015;VDB=0.0394 PL 0 MT 500 . C . 283 . DP=843;DP4=477,292,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.019 PL 0 MT 501 . C . 283 . DP=846;DP4=477,302,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 502 . C . 283 . DP=843;DP4=475,338,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0198 PL 0 MT 503 . A . 283 . DP=843;DP4=486,336,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0076 PL 0 MT 504 . T . 283 . DP=844;DP4=501,279,1,3;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.14,4.7e-06,3.5e-06,1.0;VDB=0.0115 PL 0 MT 505 . C . 283 . DP=836;DP4=481,308,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0119 PL 0 MT 506 . C . 283 . DP=835;DP4=479,332,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.5e-05,1.0,0.021;VDB=0.0089 PL 0 MT 507 . T . 283 . DP=841;DP4=498,307,1,3;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.16,1.7e-08,0.16,0.086;VDB=0.0324 PL 0 MT 508 . A . 283 . DP=847;DP4=483,322,2,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,8.7e-05,0.082,1.0;VDB=0.044 PL 0 MT 509 . C . 283 . DP=854;DP4=471,319,4,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.15,1.2e-09,0.0011,0.28;VDB=0.0394 PL 0 MT 510 . C . 283 . DP=853;DP4=463,322,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.4e-06,1.0,0.045;VDB=0.018 PL 0 MT 511 . C . 283 . DP=855;DP4=470,358,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.7e-05,0.0014,0.053;VDB=0.0146 PL 0 MT 512 . A . 283 . DP=857;DP4=488,355,0,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.42,0.00018,0.0016,1.0;VDB=0.0166 PL 0 MT 513 . G . 283 . DP=857;DP4=496,312,3,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.29,2.2e-11,0.00027,1.0;VDB=0.0417 PL 0 MT 514 . C . 283 . DP=851;DP4=471,346,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.18,0.011,1.0 PL 0 MT 515 . A . 283 . DP=843;DP4=479,344,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0019,1.0,0.017;VDB=0.0445 PL 0 MT 516 . C . 283 . DP=839;DP4=472,342,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 517 . A . 283 . DP=850;DP4=475,350,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0367 PL 0 MT 518 . C . 283 . DP=841;DP4=457,349,0,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.43,0.00018,1.0,0.063;VDB=0.0155 PL 0 MT 519 . A . 283 . DP=839;DP4=470,343,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0394 PL 0 MT 520 . C . 283 . DP=833;DP4=457,341,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.51,1e-06,0.02,0.46;VDB=0.0145 PL 0 MT 521 . A . 283 . DP=831;DP4=463,335,1,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0021,1.0,0.0088;VDB=0.0394 PL 0 MT 522 . C . 283 . DP=835;DP4=462,345,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0118 PL 0 MT 523 . A . 283 . DP=833;DP4=463,329,0,4;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.03,5.1e-08,0.11,0.026;VDB=0.0335 PL 0 MT 524 . C . 283 . DP=828;DP4=454,324,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 525 . C . 283 . DP=828;DP4=448,333,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0101 PL 0 MT 526 . G . 283 . DP=829;DP4=449,327,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0206 PL 0 MT 527 . C . 283 . DP=832;DP4=458,353,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.51,4.6e-09,0.089,0.31;VDB=0.0074 PL 0 MT 528 . T . 283 . DP=828;DP4=470,345,0,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.42,0.017,1.0,1.0;VDB=0.0417 PL 0 MT 529 . G . 283 . DP=819;DP4=465,322,0,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.41,9.5e-07,0.00067,1.0;VDB=0.0074 PL 0 MT 530 . C . 283 . DP=822;DP4=451,348,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0074 PL 0 MT 531 . T . 283 . DP=828;DP4=471,331,1,2;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.57,2e-10,0.065,1.0;VDB=0.0093 PL 0 MT 532 . A . 283 . DP=830;DP4=433,335,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.51,5e-06,1.0,0.15;VDB=0.02 PL 0 MT 533 . A . 283 . DP=825;DP4=431,343,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.51,5.8e-06,0.017,1.0;VDB=0.0374 PL 0 MT 534 . C . 283 . DP=828;DP4=452,322,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 535 . C . 283 . DP=827;DP4=441,333,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00017,1.1e-06,1.0;VDB=0.0253 PL 0 MT 536 . C . 283 . DP=830;DP4=446,328,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.004 PL 0 MT 537 . C . 283 . DP=830;DP4=436,361,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0212 PL 0 MT 538 . A . 283 . DP=830;DP4=461,358,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0245 PL 0 MT 539 . T . 283 . DP=832;DP4=474,330,1,2;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.57,8.2e-07,1.5e-05,1.0;VDB=0.0445 PL 0 MT 540 . A . 283 . DP=834;DP4=456,327,3,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.27,2.4e-05,1.0,0.078;VDB=0.0445 PL 0 MT 541 . C . 283 . DP=828;DP4=442,326,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.51,0.00044,0.01,0.18;VDB=0.0435 PL 0 MT 542 . C . 283 . DP=832;DP4=437,327,4,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.4,1.7e-12,8e-07,1.0;VDB=0.0447 PL 0 MT 543 . C . 283 . DP=829;DP4=448,323,3,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.27,5.3e-09,1.0,0.3;VDB=0.0429 PL 0 MT 544 . C . 283 . DP=833;DP4=459,326,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.27,4e-07,1.0;VDB=0.0153 PL 0 MT 545 . G . 283 . DP=831;DP4=453,338,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0373 PL 0 MT 546 . A . 283 . DP=831;DP4=460,323,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0354 PL 0 MT 547 . A . 283 . DP=826;DP4=461,331,0,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.42,2.8e-05,0.00042,0.027;VDB=0.0268 PL 0 MT 548 . C . 283 . DP=827;DP4=460,317,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 549 . C . 283 . DP=839;DP4=461,350,3,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.26,2e-08,1.0,0.01;VDB=0.0051 PL 0 MT 550 . A . 283 . DP=840;DP4=469,331,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0417 PL 0 MT 551 . A . 283 . DP=837;DP4=468,342,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.017,1.0,1.0;VDB=0.0367 PL 0 MT 552 . C . 283 . DP=834;DP4=457,322,2,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.51,3.6e-05,1.0,0.34;VDB=0.0183 PL 0 MT 553 . C . 283 . DP=838;DP4=459,345,4,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.14,2.1e-13,0.00082,1.0;VDB=0.0367 PL 0 MT 554 . A . 283 . DP=842;DP4=482,321,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00051,0.17,0.24;VDB=0.0123 PL 0 MT 555 . A . 283 . DP=842;DP4=478,326,0,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.41,3.8e-08,0.00018,1.0;VDB=0.0165 PL 0 MT 556 . A . 283 . DP=843;DP4=473,331,0,2;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.17,5.5e-08,1.0,0.31;VDB=0.0429 PL 0 MT 557 . C . 283 . DP=843;DP4=463,321,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,3.7e-05,1.0,1.0;VDB=0.0435 PL 0 MT 558 . C . 283 . DP=839;DP4=462,321,2,1;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.4e-12,5.7e-15,1.0;VDB=0.0447 PL 0 MT 559 . C . 283 . DP=827;DP4=454,315,4,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.15,6.5e-16,0.007,0.31;VDB=0.0073 PL 0 MT 560 . C . 283 . DP=816;DP4=450,334,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.9e-05,9.4e-08,1.0 PL 0 MT 561 . A . 283 . DP=821;DP4=470,317,0,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.4,0.049,1.0,1.0;VDB=0.0074 PL 0 MT 562 . A . 283 . DP=827;DP4=457,322,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0002 PL 0 MT 563 . A . 283 . DP=834;DP4=457,340,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 564 . G . 283 . DP=828;DP4=478,331,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.011,1.0,1.0;VDB=0.0025 PL 0 MT 565 . A . 283 . DP=824;DP4=452,331,2,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.51,0.00016,0.0075,0.14;VDB=0.0429 PL 0 MT 566 . C . 283 . DP=827;DP4=451,332,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00033,2.7e-05,1.0;VDB=0.0123 PL 0 MT 567 . A . 283 . DP=827;DP4=472,315,0,1;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.4,0.29,1.0,1.0;VDB=0.0367 PL 0 MT 568 . C . 283 . DP=827;DP4=449,310,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0116 PL 0 MT 569 . C . 283 . DP=826;DP4=444,307,6,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.086,3.2e-15,2.2e-08,1.0;VDB=0.0141 PL 0 MT 570 . C . 283 . DP=819;DP4=436,301,2,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.52,0.0003,1.0,1.0;VDB=0.0241 PL 0 MT 571 . C . 283 . DP=822;DP4=459,302,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0025 PL 0 MT 572 . C . 283 . DP=822;DP4=459,305,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 573 . C . 283 . DP=823;DP4=466,317,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0133 PL 0 MT 574 . A . 283 . DP=826;DP4=488,315,1,2;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.56,4.9e-06,0.019,1.0;VDB=0.044 PL 0 MT 575 . C . 283 . DP=827;DP4=479,314,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0128 PL 0 MT 576 . A . 283 . DP=831;DP4=495,313,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0028,1.6e-05,0.36;VDB=0.0169 PL 0 MT 577 . G . 283 . DP=830;DP4=516,300,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0195 PL 0 MT 578 . T . 283 . DP=837;DP4=519,299,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0302 PL 0 MT 579 . T . 283 . DP=833;DP4=495,295,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 580 . T . 283 . DP=839;DP4=497,302,1,1;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,4.3e-06,0.00033,0.061;VDB=0.0042 PL 0 MT 581 . A . 283 . DP=848;DP4=509,313,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,8e-05,1.0,0.29;VDB=0.0088 PL 0 MT 582 . T . 283 . DP=848;DP4=531,308,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,8e-07,1.0,0.33;VDB=0.0184 PL 0 MT 583 . G . 283 . DP=842;DP4=524,304,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.5e-07,2.9e-06,0.24 PL 0 MT 584 . T . 283 . DP=848;DP4=530,310,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 585 . A . 283 . DP=844;DP4=499,317,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.021 PL 0 MT 586 . G . 283 . DP=835;DP4=516,304,0,1;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.37,4.9e-06,1.0,0.035;VDB=0.044 PL 0 MT 587 . C . 283 . DP=847;DP4=503,324,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 588 . T . 283 . DP=847;DP4=521,309,0,1;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.37,2.3e-05,2.5e-12,1.0;VDB=0.0051 PL 0 MT 589 . T . 283 . DP=846;DP4=502,310,0,2;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.15,2.1e-14,0.0001,0.29;VDB=0.0227 PL 0 MT 590 . A . 283 . DP=843;DP4=504,320,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.02 PL 0 MT 591 . C . 283 . DP=847;DP4=497,316,2,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.52,1.3e-11,0.00017,0.43;VDB=0.0263 PL 0 MT 592 . C . 283 . DP=853;DP4=492,335,3,1;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.65,1.8e-12,1.2e-33,1.0;VDB=0.0169 PL 0 MT 593 . T . 283 . DP=853;DP4=511,317,3,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.29,6e-10,0.005,0.47;VDB=0.0073 PL 0 MT 594 . C . 283 . DP=853;DP4=507,323,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0017,1.0,1.0;VDB=0.0121 PL 0 MT 595 . C . 283 . DP=855;DP4=495,333,1,1;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,6.9e-14,0.00031,0.29;VDB=0.0215 PL 0 MT 596 . T . 283 . DP=859;DP4=513,329,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0032 PL 0 MT 597 . C . 283 . DP=861;DP4=509,338,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0195 PL 0 MT 598 . A . 283 . DP=853;DP4=513,318,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 599 . A . 283 . DP=845;DP4=507,310,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.7e-06,1.0,0.021;VDB=0.0 PL 0 MT 600 . A . 283 . DP=847;DP4=509,316,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.023,1.0,0.036;VDB=0.0101 PL 0 MT 601 . G . 283 . DP=846;DP4=525,302,0,1;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.37,1.6e-07,1.1e-06,1.0;VDB=0.0242 PL 0 MT 602 . C . 283 . DP=847;DP4=508,317,3,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.29,7.8e-13,0.0041,0.07;VDB=0.0013 PL 0 MT 603 . A . 283 . DP=861;DP4=534,303,2,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.54,7.4e-14,0.00014,0.5;VDB=0.0215 PL 0 MT 604 . A . 283 . DP=866;DP4=528,319,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,7.1e-07,1.0,0.036;VDB=0.0205 PL 0 MT 605 . T . 283 . DP=873;DP4=547,316,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0099 PL 0 MT 606 . A . 283 . DP=884;DP4=540,326,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.18,1.0,1.0;VDB=0.0356 PL 0 MT 607 . C . 283 . DP=880;DP4=540,323,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0086 PL 0 MT 608 . A . 283 . DP=883;DP4=542,324,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,3.8e-06,1.0,1.0;VDB=0.0374 PL 0 MT 609 . C . 283 . DP=890;DP4=548,326,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0163 PL 0 MT 610 . T . 283 . DP=900;DP4=572,322,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0242 PL 0 MT 611 . G . 283 . DP=905;DP4=577,314,0,1;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.35,0.04,1.0,1.0;VDB=0.0394 PL 0 MT 612 . A . 283 . DP=904;DP4=568,314,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0049,1.0,0.18 PL 0 MT 613 . A . 283 . DP=913;DP4=571,316,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00039,1.0,0.49;VDB=0.0064 PL 0 MT 614 . A . 283 . DP=918;DP4=571,314,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0029,1.0,1.0;VDB=0.018 PL 0 MT 615 . A . 283 . DP=924;DP4=570,328,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0144 PL 0 MT 616 . T . 283 . DP=926;DP4=593,318,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0324 PL 0 MT 617 . G . 283 . DP=926;DP4=592,325,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 618 . T . 283 . DP=932;DP4=591,320,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.044 PL 0 MT 619 . T . 283 . DP=936;DP4=586,317,0,2;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.12,9.1e-09,0.06,1.0;VDB=0.0207 PL 0 MT 620 . T . 283 . DP=933;DP4=581,315,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.4e-06,1.0,0.057;VDB=0.0245 PL 0 MT 621 . A . 283 . DP=930;DP4=585,327,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 622 . G . 283 . DP=925;DP4=600,317,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 623 . A . 283 . DP=925;DP4=584,317,1,1;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,6.9e-13,0.017,0.03;VDB=0.0414 PL 0 MT 624 . C . 283 . DP=928;DP4=584,303,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0116 PL 0 MT 625 . G . 283 . DP=930;DP4=593,301,2,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.55,0.0069,1.0,0.24;VDB=0.0143 PL 0 MT 626 . G . 283 . DP=920;DP4=583,289,1,2;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.26,3e-08,0.011,0.15;VDB=0.0435 PL 0 MT 627 . G . 283 . DP=922;DP4=583,290,0,1;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.33,1.1e-06,1.0,1.0;VDB=0.0429 PL 0 MT 628 . C . 283 . DP=921;DP4=584,303,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0111 PL 0 MT 629 . T . 283 . DP=926;DP4=613,293,2,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,6.5e-08,1.0,0.1;VDB=0.009 PL 0 MT 630 . C . 283 . DP=927;DP4=604,308,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0363 PL 0 MT 631 . A . 283 . DP=925;DP4=609,306,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0343 PL 0 MT 632 . C . 283 . DP=923;DP4=595,309,3,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.55,5.8e-20,0.15,1.0;VDB=0.0335 PL 0 MT 633 . A . 283 . DP=926;DP4=606,312,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 634 . T . 283 . DP=926;DP4=614,282,0,1;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.32,0.0078,1.0,1.0;VDB=0.0125 PL 0 MT 635 . C . 283 . DP=925;DP4=597,304,6,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.19,2.3e-19,0.00018,0.23;VDB=0.0447 PL 0 MT 636 . A . 283 . DP=926;DP4=607,302,1,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0009,0.048,1.0;VDB=0.0435 PL 0 MT 637 . C . 283 . DP=933;DP4=589,289,1,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0029,1.0,1.0;VDB=0.0207 PL 0 MT 638 . C . 283 . DP=935;DP4=597,290,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 639 . C . 283 . DP=928;DP4=594,289,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 640 . C . 283 . DP=932;DP4=591,309,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0077 PL 0 MT 641 . A . 283 . DP=935;DP4=603,314,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 642 . T . 283 . DP=935;DP4=620,289,0,3;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.033,4.4e-10,0.44,1.0;VDB=0.0268 PL 0 MT 643 . A . 283 . DP=931;DP4=599,299,2,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.1e-09,0.29,0.0039;VDB=0.0173 PL 0 MT 644 . A . 283 . DP=927;DP4=593,298,0,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0192 PL 0 MT 645 . A . 283 . DP=928;DP4=593,318,1,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.5e-05,0.094,1.0;VDB=0.0335 PL 0 MT 646 . C . 283 . DP=927;DP4=591,319,1,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.1e-06,1.0,0.054;VDB=0.0237 PL 0 MT 647 . A . 283 . DP=932;DP4=602,303,0,1;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.34,1.5e-08,0.02,0.02 PL 0 MT 648 . A . 283 . DP=931;DP4=591,304,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 649 . A . 283 . DP=937;DP4=596,317,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 650 . T . 283 . DP=948;DP4=625,303,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0299 PL 0 MT 651 . A . 283 . DP=940;DP4=604,317,3,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.56,4.4e-09,1.0,1.0;VDB=0.0215 PL 0 MT 652 . G . 283 . DP=931;DP4=610,301,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 653 . G . 283 . DP=929;DP4=592,300,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0145 PL 0 MT 654 . T . 283 . DP=935;DP4=609,309,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.039,0.079,0.099;VDB=0.0445 PL 0 MT 655 . T . 283 . DP=940;DP4=601,309,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00025,1.0,0.33;VDB=0.0215 PL 0 MT 656 . T . 283 . DP=938;DP4=594,314,0,0;MQ=50;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0227 PL 0 MT 657 . G . 283 . DP=938;DP4=613,300,0,5;MQ=50;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.004,1.5e-13,0.083,0.12;VDB=0.0414 PL 0 MT 658 . G . 283 . DP=938;DP4=592,300,1,2;MQ=50;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.26,2.3e-11,1.0,1.0;VDB=0.0414 PL 0 MT 659 . T . 283 . DP=934;DP4=608,290,1,4;MQ=50;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.041,6.2e-12,1.0,0.46;VDB=0.0445 PL 0 MT 660 . C . 283 . DP=931;DP4=594,302,2,1;MQ=50;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.2e-19,0.056,0.13;VDB=0.0302 PL 0 MT 661 . C . 283 . DP=928;DP4=586,312,0,0;MQ=49;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0156 PL 0 MT 662 . T . 283 . DP=925;DP4=614,298,0,1;MQ=49;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.33,7.3e-06,1.0,0.33;VDB=0.0233 PL 0 MT 663 . A . 283 . DP=922;DP4=592,311,0,1;MQ=49;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.35,1e-07,0.17,0.016;VDB=0.02 PL 0 MT 664 . G . 283 . DP=915;DP4=600,298,1,0;MQ=49;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.054,0.0044,1.0;VDB=0.0248 PL 0 MT 665 . C . 283 . DP=911;DP4=567,292,4,0;MQ=49;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.31,8.9e-10,1.0,1.0;VDB=0.0367 PL 0 MT 666 . C . 283 . DP=906;DP4=576,308,2,0;MQ=48;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.55,5.6e-11,0.48,0.28;VDB=0.0238 PL 0 MT 667 . T . 283 . DP=908;DP4=595,299,0,0;MQ=48;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 668 . T . 283 . DP=906;DP4=582,298,0,0;MQ=48;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 669 . T . 283 . DP=905;DP4=574,303,2,0;MQ=48;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.55,2.6e-10,0.26,0.22;VDB=0.0252 PL 0 MT 670 . C . 283 . DP=901;DP4=582,310,0,0;MQ=47;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 671 . T . 283 . DP=900;DP4=590,304,0,0;MQ=47;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 672 . A . 283 . DP=899;DP4=573,307,0,0;MQ=47;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 673 . T . 283 . DP=902;DP4=591,301,1,0;MQ=47;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,8.7e-08,0.05,1.0;VDB=0.02 PL 0 MT 674 . T . 283 . DP=898;DP4=576,300,1,0;MQ=47;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,9.9e-12,1.0,0.03 PL 0 MT 675 . A . 283 . DP=893;DP4=576,301,2,0;MQ=46;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.55,7.1e-10,0.36,1.0;VDB=0.01 PL 0 MT 676 . G . 283 . DP=888;DP4=586,290,2,0;MQ=46;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,4.6e-14,1.0,0.34;VDB=0.0135 PL 0 MT 677 . C . 283 . DP=879;DP4=562,290,2,0;MQ=46;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.55,0.0012,1.0,0.11;VDB=0.0202 PL 0 MT 678 . T . 283 . DP=875;DP4=585,279,0,0;MQ=46;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0367 PL 0 MT 679 . C . 283 . DP=872;DP4=571,284,1,1;MQ=46;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.55,9.3e-10,0.38,0.06;VDB=0.0175 PL 0 MT 680 . T . 283 . DP=874;DP4=583,283,0,0;MQ=45;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 681 . T . 283 . DP=870;DP4=569,275,0,0;MQ=45;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 682 . A . 283 . DP=860;DP4=568,276,2,0;MQ=45;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1e-11,0.15,1.0;VDB=0.0252 PL 0 MT 683 . G . 283 . DP=858;DP4=584,270,0,0;MQ=45;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 684 . T . 283 . DP=855;DP4=584,262,0,0;MQ=45;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 685 . A . 283 . DP=853;DP4=571,262,1,0;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,5.3e-08,1.0,0.23 PL 0 MT 686 . A . 283 . DP=848;DP4=571,262,0,0;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 687 . G . 283 . DP=847;DP4=585,257,0,0;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 688 . A . 283 . DP=845;DP4=569,262,1,0;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,6.5e-07,0.15,1.0;VDB=0.0253 PL 0 MT 689 . T . 283 . DP=845;DP4=580,257,0,0;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.025 PL 0 MT 690 . T . 283 . DP=852;DP4=569,264,0,1;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.32,8.9e-09,0.26,1.0 PL 0 MT 691 . A . 283 . DP=846;DP4=568,263,1,0;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.6e-05,0.085,0.031;VDB=0.0078 PL 0 MT 692 . C . 283 . DP=843;DP4=554,266,0,0;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 693 . A . 283 . DP=835;DP4=566,262,0,2;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.1,2.1e-10,0.086,0.023;VDB=0.0168 PL 0 MT 694 . C . 283 . DP=833;DP4=556,263,1,0;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.8e-08,0.073,0.12;VDB=0.0 PL 0 MT 695 . A . 283 . DP=838;DP4=569,262,0,0;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0207 PL 0 MT 696 . T . 283 . DP=837;DP4=577,253,0,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 697 . G . 283 . DP=836;DP4=575,249,1,2;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.22,3.7e-16,1.0,1.0;VDB=0.0245 PL 0 MT 698 . C . 283 . DP=836;DP4=559,256,1,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.0,0.18,1.0;VDB=0.0106 PL 0 MT 699 . A . 283 . DP=833;DP4=571,253,0,0;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 700 . A . 283 . DP=830;DP4=558,258,0,0;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 701 . G . 283 . DP=826;DP4=565,248,0,0;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0062 PL 0 MT 702 . C . 283 . DP=834;DP4=554,266,0,0;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.019 PL 0 MT 703 . A . 283 . DP=828;DP4=563,260,0,1;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.32,2.7e-05,1.0,1.0 PL 0 MT 704 . T . 283 . DP=828;DP4=567,239,0,1;MQ=39;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.3,0.054,0.098,1.0;VDB=0.033 PL 0 MT 705 . C . 283 . DP=825;DP4=558,247,0,0;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0394 PL 0 MT 706 . C . 283 . DP=827;DP4=551,253,3,0;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.56,2.9e-10,0.045,1.0;VDB=0.0268 PL 0 MT 707 . C . 283 . DP=825;DP4=556,248,0,0;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0123 PL 0 MT 708 . C . 283 . DP=820;DP4=553,250,1,1;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.53,3.1e-06,1.0,0.16;VDB=0.0193 PL 0 MT 709 . G . 283 . DP=833;DP4=566,256,0,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 710 . T . 283 . DP=834;DP4=567,260,0,0;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0193 PL 0 MT 711 . T . 283 . DP=833;DP4=557,256,0,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 712 . C . 283 . DP=838;DP4=566,256,0,0;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 713 . C . 283 . DP=839;DP4=559,268,1,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,7.3e-06,0.48,1.0;VDB=0.0158 PL 0 MT 714 . A . 283 . DP=861;DP4=560,296,0,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0188 PL 0 MT 715 . G . 283 . DP=856;DP4=560,279,0,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 716 . T . 283 . DP=856;DP4=557,290,1,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.019,0.47,1.0;VDB=0.0073 PL 0 MT 717 . G . 283 . DP=853;DP4=554,288,1,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.1e-06,0.15,0.12;VDB=0.0111 PL ok testWrite (vcf.test.test_vcf.TestWriterDictionaryMeta) ... ok test_samples (vcf.test.test_vcf.TestSamplesSpace) ... ok test_metadata_whitespace (vcf.test.test_vcf.TestMetadataWhitespace) ... ok test_mixed_filtering (vcf.test.test_vcf.TestMixedFiltering) ... ok test_aaf (vcf.test.test_vcf.TestRecord) ... ok test_call_rate (vcf.test.test_vcf.TestRecord) ... ok test_coordinates_for_None_alt (vcf.test.test_vcf.TestRecord) ... ok test_coordinates_for_breakend (vcf.test.test_vcf.TestRecord) ... ok test_coordinates_for_deletion (vcf.test.test_vcf.TestRecord) ... ok test_coordinates_for_insert_and_snp (vcf.test.test_vcf.TestRecord) ... ok test_coordinates_for_insertion (vcf.test.test_vcf.TestRecord) ... ok test_coordinates_for_insertion_and_deletion (vcf.test.test_vcf.TestRecord) ... ok test_coordinates_for_multiple_snps (vcf.test.test_vcf.TestRecord) ... ok test_coordinates_for_snp (vcf.test.test_vcf.TestRecord) ... ok test_coordinates_for_snp_and_deletion (vcf.test.test_vcf.TestRecord) ... ok test_dunder_eq (vcf.test.test_vcf.TestRecord) ... ok test_heterozygosity (vcf.test.test_vcf.TestRecord) ... ok test_info_multiple_values (vcf.test.test_vcf.TestRecord) ... ok test_is_deletion (vcf.test.test_vcf.TestRecord) ... ok test_is_indel (vcf.test.test_vcf.TestRecord) ... ok test_is_snp (vcf.test.test_vcf.TestRecord) ... 0 MT 718 . A . 283 . DP=854;DP4=546,300,0,1;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.36,0.028,1.0,1.0 PL 0 MT 719 . G . 283 . DP=851;DP4=547,279,0,2;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.11,0.00011,1.0,0.1;VDB=0.0435 PL 0 MT 720 . T . 283 . DP=859;DP4=545,281,2,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.55,0.001,0.21,0.32;VDB=0.035 PL 0 MT 721 . T . 283 . DP=860;DP4=543,276,1,1;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,4.4e-10,0.18,1.0;VDB=0.0057 PL 0 MT 722 . C . 283 . DP=862;DP4=540,307,1,0;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.2e-05,0.14,0.46 PL 0 MT 723 . A . 283 . DP=857;DP4=545,297,1,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.14,0.25,0.036;VDB=0.0394 PL 0 MT 724 . C . 283 . DP=862;DP4=535,283,1,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0038,0.45,1.0;VDB=0.0094 PL 0 MT 725 . C . 283 . DP=864;DP4=532,286,1,2;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.28,4.9e-14,0.34,1.0;VDB=0.0417 PL 0 MT 726 . C . 283 . DP=861;DP4=537,308,0,1;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.37,2.3e-06,1.0,0.14;VDB=0.0042 PL 0 MT 727 . T . 283 . DP=861;DP4=548,290,0,0;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0325 PL 0 MT 728 . C . 283 . DP=860;DP4=541,312,0,0;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 729 . T . 283 . DP=863;DP4=547,283,0,1;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.34,7.1e-05,0.24,0.39;VDB=0.0025 PL 0 MT 730 . A . 283 . DP=865;DP4=543,282,0,0;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 731 . A . 283 . DP=867;DP4=542,280,0,0;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 732 . A . 283 . DP=868;DP4=542,317,1,0;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0024,0.22,0.44;VDB=0.0049 PL 0 MT 733 . T . 283 . DP=872;DP4=546,269,1,2;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.26,8.1e-05,0.31,0.14;VDB=0.0268 PL 0 MT 734 . C . 283 . DP=874;DP4=540,316,0,0;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.022 PL 0 MT 735 . A . 283 . DP=876;DP4=545,313,0,0;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0073 PL 0 MT 736 . C . 283 . DP=877;DP4=537,280,1,1;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,9.7e-05,0.096,1.0;VDB=0.0215 PL 0 MT 737 . C . 283 . DP=874;DP4=522,330,0,0;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 738 . A . 283 . DP=875;DP4=533,331,0,0;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0057 PL 0 MT 739 . C . 283 . DP=880;DP4=533,293,0,1;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.36,0.00013,0.043,1.0;VDB=0.0225 PL 0 MT 740 . G . 283 . DP=879;DP4=529,324,0,2;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.15,0.00048,0.21,1.0;VDB=0.0074 PL 0 MT 741 . A . 283 . DP=886;DP4=531,345,0,0;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.021 PL 0 MT 742 . T . 283 . DP=888;DP4=539,306,0,3;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.048,1.5e-08,1.0,1.0;VDB=0.0006 PL 0 MT 743 . C . 283 . DP=887;DP4=533,344,1,1;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,4.4e-08,1.0,0.048;VDB=0.035 PL 0 MT 744 . A . 283 . DP=888;DP4=538,316,0,0;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 745 . A . 283 . DP=891;DP4=532,320,0,0;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 746 . A . 283 . DP=887;DP4=528,317,1,0;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,6.3e-06,0.17,0.46;VDB=0.0123 PL 0 MT 747 . A . 283 . DP=884;DP4=524,347,0,0;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 748 . G . 283 . DP=883;DP4=520,311,1,0;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,8.1e-05,0.035,1.0;VDB=0.0302 PL 0 MT 749 . G . 283 . DP=888;DP4=503,316,0,1;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.39,0.027,0.035,1.0;VDB=0.044 PL 0 MT 750 . A G 222 . DP=890;DP4=0,3,483,315;MQ=45;FQ=-282.0;AF1=1.0;AC1=2.0;PV4=0.062,1.0,0.18,1.0;VDB=0.0435 GT:PL:GQ 1/1:255,255,0:99 Record(CHROM=20, POS=14370, REF=G, ALT=[A]) Call(sample=NA00001, CallData(GT=0|0, GQ=48, DP=1, HQ=[51, 51])) Call(sample=NA00002, CallData(GT=1|0, GQ=48, DP=8, HQ=[51, 51])) Call(sample=NA00003, CallData(GT=1/1, GQ=43, DP=5, HQ=[None, None])) Record(CHROM=20, POS=17330, REF=T, ALT=[A]) Call(sample=NA00001, CallData(GT=0|0, GQ=49, DP=3, HQ=[58, 50])) Call(sample=NA00002, CallData(GT=0|1, GQ=3, DP=5, HQ=[65, 3])) Call(sample=NA00003, CallData(GT=0/0, GQ=41, DP=3, HQ=None)) Record(CHROM=20, POS=1110696, REF=A, ALT=[G, T]) Call(sample=NA00001, CallData(GT=1|2, GQ=21, DP=6, HQ=[23, 27])) Call(sample=NA00002, CallData(GT=2|1, GQ=2, DP=0, HQ=[18, 2])) Call(sample=NA00003ok test_is_snp_for_n_alt (vcf.test.test_vcf.TestRecord) ... ok test_is_sv (vcf.test.test_vcf.TestRecord) ... ok test_is_sv_precise (vcf.test.test_vcf.TestRecord) ... ok test_is_transition (vcf.test.test_vcf.TestRecord) ... ok test_num_calls (vcf.test.test_vcf.TestRecord) ... ok test_pi (vcf.test.test_vcf.TestRecord) ... ok test_pickle (vcf.test.test_vcf.TestRecord) ... ok test_qual (vcf.test.test_vcf.TestRecord) ... ok test_sv_end (vcf.test.test_vcf.TestRecord) ... ok test_var_subtype (vcf.test.test_vcf.TestRecord) ... ok test_var_type (vcf.test.test_vcf.TestRecord) ... ok test_dunder_eq (vcf.test.test_vcf.TestCall) ... ok test_gt_bases (vcf.test.test_vcf.TestCall) ... ok test_gt_types (vcf.test.test_vcf.TestCall) ... ok test_phased (vcf.test.test_vcf.TestCall) ... ok testFetchRange (vcf.test.test_vcf.TestFetch) ... skipped 'test requires installation of PySAM.' testFetchesAllFromChromIfOnlyChromSpecified (vcf.test.test_vcf.TestFetch) ... skipped 'test requires installation of PySAM.' testFetchesFromStartIfStartOnlySpecified (vcf.test.test_vcf.TestFetch) ... skipped 'test requires installation of PySAM.' testNoVariantsForZeroLengthInterval (vcf.test.test_vcf.TestFetch) ... skipped 'test requires installation of PySAM.' testNoVariantsInRange (vcf.test.test_vcf.TestFetch) ... skipped 'test requires installation of PySAM.' testFetch (vcf.test.test_vcf.TestIssue201) ... skipped 'test requires installation of PySAM.' testIterate (vcf.test.test_vcf.TestIssue201) ... skipped 'test requires installation of PySAM.' testOpenFilehandle (vcf.test.test_vcf.TestOpenMethods) ... ok testOpenFilehandleGzipped (vcf.test.test_vcf.TestOpenMethods) ... ok testOpenFilename (vcf.test.test_vcf.TestOpenMethods) ... ok testOpenFilenameGzipped (vcf.test.test_vcf.TestOpenMethods) ... ok testCLIListSamples (vcf.test.test_vcf.TestSampleFilter) ... ok testCLIWithFilter (vcf.test.test_vcf.TestSampleFilter) ... ok testSampleFilterModule (vcf.test.test_vcf.TestSampleFilter) ... ok testApplyFilter (vcf.test.test_vcf.TestFilter) ... skipped 'test currently broken' testApplyMultipleFilters (vcf.test.test_vcf.TestFilter) ... skipped 'test currently broken' test_issue_16 (vcf.test.test_vcf.TestRegression) ... ok test_null_mono (vcf.test.test_vcf.TestRegression) ... , CallData(GT=2/2, GQ=35, DP=4, HQ=None)) Record(CHROM=20, POS=1230237, REF=T, ALT=[None]) Call(sample=NA00001, CallData(GT=0|0, GQ=54, DP=7, HQ=[56, 60])) Call(sample=NA00002, CallData(GT=0|0, GQ=48, DP=4, HQ=[51, 51])) Call(sample=NA00003, CallData(GT=0/0, GQ=61, DP=2, HQ=None)) Record(CHROM=20, POS=1234567, REF=GTCT, ALT=[G, GTACT]) Call(sample=NA00001, CallData(GT=./., GQ=35, DP=4)) Call(sample=NA00002, CallData(GT=0/2, GQ=17, DP=2)) Call(sample=NA00003, CallData(GT=1/1, GQ=40, DP=3)) CallData(GT=0|0, GQ=48, DP=1, HQ=[51, 51]) CallData(GT=1|0, GQ=48, DP=8, HQ=[51, 51]) CallData(GT=1/1, GQ=43, DP=5, HQ=[None, None]) CallData(GT=0|0, GQ=49, DP=3, HQ=[58, 50]) CallData(GT=0|1, GQ=3, DP=5, HQ=[65, 3]) CallData(GT=0/0, GQ=41, DP=3, HQ=None) CallData(GT=1|2, GQ=21, DP=6, HQ=[23, 27]) CallData(GT=2|1, GQ=2, DP=0, HQ=[18, 2]) CallData(GT=2/2, GQ=35, DP=4, HQ=None) CallData(GT=0|0, GQ=54, DP=7, HQ=[56, 60]) CallData(GT=0|0, GQ=48, DP=4, HQ=[51, 51]) CallData(GT=0/0, GQ=61, DP=2, HQ=None) CallData(GT=./., GQ=35, DP=4) CallData(GT=0/2, GQ=17, DP=2) CallData(GT=1/1, GQ=40, DP=3) /<>/vcf/test/null_genotype_mono.vcf ##fileformat=VCFv4.1 ##UnifiedGenotyper="analysis_type=UnifiedGenotyper input_file=[np_control.bam] read_buffer_size=null phone_home=STANDARD read_filter=[] intervals=[tests/read_chr.intervals] excludeIntervals=null interval_set_rule=UNION interval_merging=ALL reference_sequence=/data/reference/ucsc/hg19/ucsc.hg19.fasta rodBind=[] nonDeterministicRandomSeed=false downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=250 baq=OFF baqGapOpenPenalty=40.0 performanceLog=null useOriginalQualities=false defaultBaseQualities=-1 validation_strictness=SILENT unsafe=null num_threads=1 num_cpu_threads=null num_io_threads=null num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false logging_level=info log_to_file=null help=false genotype_likelihoods_model=SNP p_nonref_model=EXACT heterozygosity=0.001 pcr_error_rate=1.0E-4 genotyping_mode=DISCOVERY output_mode=EMIT_ALL_SITES standard_min_confidence_threshold_for_calling=30.0 standard_min_confidence_threshold_for_emitting=30.0 computeSLOD=false alleles=(RodBinding name= source=UNBOUND) min_base_quality_score=17 max_deletion_fraction=0.05 multiallelic=false max_alternate_alleles=5 min_indel_count_for_genotyping=5 indel_heterozygosity=1.25E-4 indelGapContinuationPenalty=10.0 indelGapOpenPenalty=45.0 indelHaplotypeSize=80 bandedIndel=false indelDebug=false ignoreSNPAlleles=false dbsnp=(RodBinding name= source=UNBOUND) out=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub NO_HEADER=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub sites_only=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub debug_file=null metrics_file=null annotation=[] excludeAnnotation=[] filter_mismatching_base_and_quals=false" ##reference=file:///data/reference/ucsc/hg19/ucsc.hg19.fasta ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##cook test_trim (vcf.test.test_vcf.TestUtils) ... ok test_walk (vcf.test.test_vcf.TestUtils) ... ok test_meta (vcf.test.test_vcf.TestGATKMeta) ... ok test_read_uncalled (vcf.test.test_vcf.TestUncalledGenotypes) Test that uncalled genotypes are properly read into ... ok test_write_uncalled (vcf.test.test_vcf.TestUncalledGenotypes) Test that uncalled genotypes are written just as ... ok test_strelka (vcf.test.test_vcf.TestStrelka) ... ok ---------------------------------------------------------------------- Ran 95 tests in 2.270s OK (skipped=9) ntig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA19239 chr1 65312657 . G . . . . GT ./. I: pybuild base:184: python3.6 setup.py test running test running build_py running egg_info writing PyVCF.egg-info/PKG-INFO writing dependency_links to PyVCF.egg-info/dependency_links.txt writing entry points to PyVCF.egg-info/entry_points.txt writing requirements to PyVCF.egg-info/requires.txt writing top-level names to PyVCF.egg-info/top_level.txt reading manifest file 'PyVCF.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'PyVCF.egg-info/SOURCES.txt' running egg_info creating /<>/.pybuild/pythonX.Y_3.6/build/PyVCF.egg-info writing /<>/.pybuild/pythonX.Y_3.6/build/PyVCF.egg-info/PKG-INFO writing dependency_links to /<>/.pybuild/pythonX.Y_3.6/build/PyVCF.egg-info/dependency_links.txt writing entry points to /<>/.pybuild/pythonX.Y_3.6/build/PyVCF.egg-info/entry_points.txt writing requirements to /<>/.pybuild/pythonX.Y_3.6/build/PyVCF.egg-info/requires.txt writing top-level names to /<>/.pybuild/pythonX.Y_3.6/build/PyVCF.egg-info/top_level.txt writing manifest file '/<>/.pybuild/pythonX.Y_3.6/build/PyVCF.egg-info/SOURCES.txt' reading manifest file '/<>/.pybuild/pythonX.Y_3.6/build/PyVCF.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file '/<>/.pybuild/pythonX.Y_3.6/build/PyVCF.egg-info/SOURCES.txt' running build_ext skipping 'vcf/cparse.c' Cython extension (up-to-date) test_contig_idonly (vcf.test.test_vcf.TestVcfSpecs) Test VCF inputs with ##contig inputs containing only IDs. produced by bcftools 1.2+ ... /usr/lib/python3.6/unittest/case.py:605: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<>/.pybuild/pythonX.Y_3.6/build/vcf/test/contig_idonly.vcf' mode='rt' encoding='UTF-8'> testMethod() ok test_vcf_4_0 (vcf.test.test_vcf.TestVcfSpecs) ... /usr/lib/python3.6/unittest/case.py:605: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<>/.pybuild/pythonX.Y_3.6/build/vcf/test/example-4.0.vcf' mode='rt' encoding='UTF-8'> testMethod() ok test_vcf_4_1 (vcf.test.test_vcf.TestVcfSpecs) ... /usr/lib/python3.6/unittest/case.py:605: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<>/.pybuild/pythonX.Y_3.6/build/vcf/test/example-4.1.vcf' mode='rt' encoding='UTF-8'> testMethod() ok test_vcf_4_1_bnd (vcf.test.test_vcf.TestVcfSpecs) ... /usr/lib/python3.6/unittest/case.py:605: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<>/.pybuild/pythonX.Y_3.6/build/vcf/test/example-4.1-bnd.vcf' mode='rt' encoding='UTF-8'> testMethod() ok test_vcf_4_1_sv (vcf.test.test_vcf.TestVcfSpecs) ... /usr/lib/python3.6/unittest/case.py:605: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<>/.pybuild/pythonX.Y_3.6/build/vcf/test/example-4.1-sv.vcf' mode='rt' encoding='UTF-8'> testMethod() ok test_vcf_4_2 (vcf.test.test_vcf.TestVcfSpecs) ... /usr/lib/python3.6/unittest/case.py:605: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<>/.pybuild/pythonX.Y_3.6/build/vcf/test/example-4.2.vcf' mode='rt' encoding='UTF-8'> testMethod() ok testCalls (vcf.test.test_vcf.TestGatkOutput) ... ok testFormats (vcf.test.test_vcf.TestGatkOutput) ... ok testInfos (vcf.test.test_vcf.TestGatkOutput) ... ok testSamples (vcf.test.test_vcf.TestGatkOutput) ... ok testCalls (vcf.test.test_vcf.TestFreebayesOutput) ... ok testFormats (vcf.test.test_vcf.TestFreebayesOutput) ... ok testInfos (vcf.test.test_vcf.TestFreebayesOutput) ... ok testParse (vcf.test.test_vcf.TestFreebayesOutput) ... /usr/lib/python3.6/unittest/case.py:605: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<>/.pybuild/pythonX.Y_3.6/build/vcf/test/freebayes.vcf' mode='rt' encoding='UTF-8'> testMethod() ok testSamples (vcf.test.test_vcf.TestFreebayesOutput) ... ok testParse (vcf.test.test_vcf.TestSamtoolsOutput) ... /usr/lib/python3.6/unittest/case.py:605: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<>/.pybuild/pythonX.Y_3.6/build/vcf/test/samtools.vcf' mode='rt' encoding='UTF-8'> testMethod() ok testParse (vcf.test.test_vcf.TestBcfToolsOutput) ... /usr/lib/python3.6/unittest/case.py:605: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<>/.pybuild/pythonX.Y_3.6/build/vcf/test/bcftools.vcf' mode='rt' encoding='UTF-8'> testMethod() ok test_issue_214_is_snp (vcf.test.test_vcf.TestIssue214) ... /usr/lib/python3.6/unittest/case.py:605: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<>/.pybuild/pythonX.Y_3.6/build/vcf/test/issue-214.vcf' mode='rt' encoding='UTF-8'> testMethod() ok test_issue_214_ref_is_del_is_snp (vcf.test.test_vcf.TestIssue214) ... ok test_issue_214_ref_is_del_var_type (vcf.test.test_vcf.TestIssue214) ... ok test_issue_214_var_type (vcf.test.test_vcf.TestIssue214) ... ok testParse (vcf.test.test_vcf.Test1kg) ... /usr/lib/python3.6/unittest/case.py:605: ResourceWarning: unclosed file <_io.BufferedReader name='/<>/.pybuild/pythonX.Y_3.6/build/vcf/test/1kg.vcf.gz'> testMethod() ok test_issue_49 (vcf.test.test_vcf.Test1kg) docstring for test_issue_49 ... /usr/lib/python3.6/unittest/case.py:605: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<>/.pybuild/pythonX.Y_3.6/build/vcf/test/issue_49.vcf' mode='r' encoding='UTF-8'> testMethod() ok test_reader (vcf.test.test_vcf.Test1kgSites) The samples attribute should be the empty list. ... /usr/lib/python3.6/unittest/case.py:605: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<>/.pybuild/pythonX.Y_3.6/build/vcf/test/1kg.sites.vcf' mode='r' encoding='UTF-8'> testMethod() ok test_writer (vcf.test.test_vcf.Test1kgSites) FORMAT should not be written if not present in the template and no ... ok testParse (vcf.test.test_vcf.TestGoNL) ... /usr/lib/python3.6/unittest/case.py:605: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<>/.pybuild/pythonX.Y_3.6/build/vcf/test/gonl.chr20.release4.gtc.vcf' mode='rt' encoding='UTF-8'> testMethod() ok test_contig_line (vcf.test.test_vcf.TestGoNL) ... ok test_string_as_flag (vcf.test.test_vcf.TestStringAsFlag) A flag INFO field is declared as string (not allowed by the spec, ... /usr/lib/python3.6/unittest/case.py:605: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<>/.pybuild/pythonX.Y_3.6/build/vcf/test/string_as_flag.vcf' mode='r' encoding='UTF-8'> testMethod() ok test_writer (vcf.test.test_vcf.TestInfoOrder) ... ok test_parse (vcf.test.test_vcf.TestInfoTypeCharacter) ... /usr/lib/python3.6/unittest/case.py:605: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<>/.pybuild/pythonX.Y_3.6/build/vcf/test/info-type-character.vcf' mode='rt' encoding='UTF-8'> testMethod() ok test_write (vcf.test.test_vcf.TestInfoTypeCharacter) ... ok test_parse (vcf.test.test_vcf.TestParseMetaLine) ... /usr/lib/python3.6/unittest/case.py:605: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<>/.pybuild/pythonX.Y_3.6/build/vcf/test/parse-meta-line.vcf' mode='rt' encoding='UTF-8'> testMethod() ok test_write (vcf.test.test_vcf.TestParseMetaLine) ... ok testWrite (vcf.test.test_vcf.TestGatkOutputWriter) ... Record(CHROM=1, POS=2, REF=A, ALT=[T]) T Call(sample=Germline, CallData(GT=0|1, MQ=[0, 40], HAP=[35, 46])) Call(sample=Tumor, CallData(GT=0|1, MQ=[0, 0], HAP=[35, 46])) Record(CHROM=1, POS=2, REF=T, ALT=[T[2:3[]) T[2:3[ Call(sample=Germline, CallData(GT=0|0, MQ=[0, 0], BHAP=['35>35', '46>46'])) Call(sample=Tumor, CallData(GT=0|1, MQ=[0, 40], BHAP=['35>35', '46>17'])) Record(CHROM=1, POS=3, REF=A, ALT=[]2:2]A]) ]2:2]A Call(sample=Germline, CallData(GT=0|0, MQ=[0, 0], BHAP=['35>35', '46>46'])) Call(sample=Tumor, CallData(GT=0|1, MQ=[0, 40], BHAP=['35>35', '46>17'])) Record(CHROM=2, POS=1, REF=G, ALT=[T]) T Call(sample=Germline, CallData(GT=1|0, MQ=[0, 40], HAP=[17, 23])) Call(sample=Tumor, CallData(GT=1|0, MQ=[0, 0], HAP=[17, 23])) Record(CHROM=2, POS=2, REF=G, ALT=[G[1:3[]) G[1:3[ Call(sample=Germline, CallData(GT=0|0, MQ=[0, 0], BHAP=['17>17', '23>23'], BCN=['1', '1'])) Call(sample=Tumor, CallData(GT=0|1, MQ=[0, 40], BHAP=['23>23', '17>46'], BCN=['2', '1'])) Record(CHROM=2, POS=3, REF=G, ALT=[]1:2]G]) ]1:2]G Call(sample=Germline, CallData(GT=0|0, MQ=[0, 0], BHAP=['17>17', '23>23'], BCN=['1', '1'])) Call(sample=Tumor, CallData(GT=0|1, MQ=[0, 40], BHAP=['23>23', '17>46'], BCN=['2', '1'])) Record(CHROM=2, POS=4, REF=G, ALT=[]2:6]G]) ]2:6]G Call(sample=Germline, CallData(GT=0|0, MQ=[0, 0], BHAP=['17>17', '23>23'], AHAP=[17, 23], BCN=['1', '1'])) Call(sample=Tumor, CallData(GT=0|0|1, MQ=[0, 0, 40], BHAP=['17>17', '23>23', '24>23'], AHAP=[17, 23, 23], BCN=['1', '2', '2'])) Record(CHROM=2, POS=6, REF=T, ALT=[T[2:4[]) T[2:4[ Call(sample=Germline, CallData(GT=0|0, MQ=[0, 0], BHAP=['17>17', '23>23'], AHAP=[17, 23], BCN=['1', '1'])) Call(sample=Tumor, CallData(GT=0|1|0, MQ=[0, 40, 0], BHAP=['17>17', '23>24', '24>24'], AHAP=[17, 23, 23], BCN=['1', '2', '2'])) Record(CHROM=2, POS=6, REF=T, ALT=[A]) A Call(sample=Germline, CallData(GT=0|1, MQ=[0, 40], HAP=[23, 17], AHAP=[23, 17])) Call(sample=Tumor, CallData(GT=0|1|1, MQ=[0, 0, 0], HAP=[17, 23, 24], AHAP=[17, 23, 23])) Record(CHROM=2, POS=8, REF=T, ALT=[A]) A Call(sample=Germline, CallData(GT=0|0, MQ=[0, 0], HAP=[23, 17], AHAP=[23, 17])) Call(sample=Tumor, CallData(GT=0|1|1, MQ=[0, 40, 40], HAP=[17, 23, 24], AHAP=[17, 23, 23])) Record(CHROM=1, POS=2827693, REF=CCGTGGATGCGGGGACCCGCATCCCCTCTCCCTTCACAGCTGAGTGACCCACATCCCCTCTCCCCTCGCA, ALT=[C]) C Call(sample=NA00001, CallData(GT=1/1, GQ=13.9)) Record(CHROM=2, POS=321682, REF=T, ALT=[]) Call(sample=NA00001, CallData(GT=0/1, GQ=12.0)) Record(CHROM=2, POS=14477084, REF=C, ALT=[]) Call(sample=NA00001, CallData(GT=0/1, GQ=12.0)) Record(CHROM=3, POS=9425916, REF=C, ALT=[]) Call(sample=NA00001, CallData(GT=1/1, GQ=15.0)) Record(CHROM=3, POS=12665100, REF=A, ALT=[]) Call(sample=NA00001, CallData(GT=./., GQ=0.0, CN=3, CNQ=16.2)) Record(CHROM=4, POS=18665128, REF=T, ALT=[]) Call(sample=NA00001, CallData(GT=./., GQ=0.0, CN=5, CNQ=8.3)) ['BLANK', 'NA12878', 'NA12891', 'NA12892', 'NA19238', 'NA19239', 'NA19240'] ##fileformat=VCFv4.1 ##UnifiedGenotyper="analysis_type=UnifiedGenotyper input_file=[reads.bam] read_buffer_size=null phone_home=NO_ET read_filter=[] intervals=[chr22:42020321-42527953] excludeIntervals=null interval_set_rule=UNION interval_merging=ALL reference_sequence=/data/reference/ucsc/hg19/ucsc.hg19.fasta rodBind=[] nonDeterministicRandomSeed=false downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=250 baq=CALCULATE_AS_NECESSARY baqGapOpenPenalty=40.0 performanceLog=null useOriginalQualities=false defaultBaseQualities=-1 validation_strictness=SILENT unsafe=null num_threads=2 num_cpu_threads=null num_io_threads=null num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false logging_level=INFO log_to_file=gatk.log help=false genotype_likelihoods_model=SNP p_nonref_model=EXACT heterozygosity=0.001 pcr_error_rate=1.0E-4 genotyping_mode=DISCOVERY output_mode=EMIT_VARIANTS_ONLY standard_min_confidence_threshold_for_calling=30.0 standard_min_confidence_threshold_for_emitting=30.0 computeSLOD=false alleles=(RodBinding name= source=UNBOUND) min_base_quality_score=17 max_deletion_fraction=0.15 multiallelic=false max_alternate_alleles=5 min_indel_count_for_genotyping=5 indel_heterozygosity=1.25E-4 indelGapContinuationPenalty=10.0 indelGapOpenPenalty=45.0 indelHaplotypeSize=80 bandedIndel=false indelDebug=false ignoreSNPAlleles=false dbsnp=(RodBinding name=dbsnp source=/data/reference/dbSNP_132/dbsnp_132.hg19.vcf) out=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub NO_HEADER=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub sites_only=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub debug_file=null metrics_file=null annotation=[] excludeAnnotation=[] filter_mismatching_base_and_quals=false" ##reference=file:///data/reference/ucsc/hg19/ucsc.hg19.fasta ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT BLANK NA12878 NA12891 NA12892 NA19238 NA19239 NA19240 chr22 42522392 rs28371738 G A 2951.95 . AC=2;AF=0.143;AN=14;BaseQRankSum=0.375;DB;DP=1506;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=123.5516;MQ=253.92;MQ0=0;MQRankSum=0.685;QD=5.9;ReadPosRankSum=0.59 GT:AD:DP:GQ:PL 0/0:6,0:6:18.04:0,18,211 0/1:138,107:250:99.0:1961,0,3049 0/1:169,77:250:99.0:1038,0,3533 0/0:249,0:250:99.0:0,600,5732 0/0:248,1:250:99.0:0,627,6191 0/0:250,0:250:99.0:0,615,5899 0/0:250,0:250:99.0:0,579,5674 chr22 42522613 rs1135840 G C 11611.03 . AC=6;AF=0.429;AN=14;BaseQRankSum=16.289;DB;DP=1518;DS;Dels=0.03;FS=0.0;HRun=0;HaplotypeScore=142.5716;MQ=242.46;MQ0=0;MQRankSum=2.01;QD=9.16;ReadPosRankSum=-1.731 GT:AD:DP:GQ:PL 0/1:13,4:17:62.64:63,0,296 0/1:118,127:246:99.0:2396,0,1719 0/0:241,0:244:99.0:0,459,4476 0/1:161,85:246:99.0:1489,0,2353 0/1:110,132:242:99.0:2561,0,1488 0/1:106,135:242:99.0:2613,0,1389 0/1:116,126:243:99.0:2489,0,1537 chr22 42522755 . C G 36.98 . AC=1;AF=0.071;AN=14;BaseQRankSum=-14.866;DP=1527;DS;Dels=0.01;FS=0.0;HRun=0;HaplotypeScore=253.4254;MQ=197.36;MQ0=2;MQRankSum=-10.81;QD=0.15;ReadPosRankSum=-17.244 GT:AD:DP:GQ:PL 0/0:26,1:27:51.08:0,51,570 0/0:208,40:248:99.0:0,236,4169 0/0:192,56:249:99.0:0,114,4292 0/1:179,66:245:75.42:75,0,3683 0/0:214,32:246:99.0:0,172,4235 0/0:200,49:249:61.05:0,61,4049 0/0:195,50:246:32.07:0,32,3757 chr22 42523003 rs116917064 A G 7113.55 . AC=8;AF=0.571;AN=14;BaseQRankSum=6.026;DB;DP=1433;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=101.7894;MQ=182.04;MQ0=0;MQRankSum=-2.501;QD=4.96;ReadPosRankSum=8.294 GT:AD:DP:GQ:PL 0/1:10,2:12:0.62:1,0,257 1/1:9,173:183:99.0:2385,273,0 0/1:153,95:249:99.0:355,0,2355 0/1:140,110:250:99.0:1334,0,2242 0/1:164,85:249:99.0:1070,0,2279 0/1:160,90:250:99.0:1245,0,2300 0/1:156,81:238:99.0:724,0,2764 chr22 42523077 . A G 54.31 . AC=1;AF=0.071;AN=14;BaseQRankSum=-0.563;DP=1521;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=54.8434;MQ=164.04;MQ0=1;MQRankSum=-2.419;QD=2.59;ReadPosRankSum=-1.229 GT:AD:DP:GQ:PL 0/1:17,4:21:92.74:93,0,533 0/0:249,1:250:99.0:0,544,6985 0/0:250,0:250:99.0:0,577,6968 0/0:248,2:250:99.0:0,605,7687 0/0:248,1:249:99.0:0,583,7300 0/0:246,2:249:99.0:0,626,7473 0/0:248,1:249:99.0:0,594,7553 chr22 42523209 rs28371730 T C 15556.89 . AC=8;AF=0.571;AN=14;BaseQRankSum=3.458;DB;DP=1509;DS;Dels=0.01;FS=0.0;HRun=0;HaplotypeScore=120.8206;MQ=221.07;MQ0=0;MQRankSum=-4.945;QD=10.31;ReadPosRankSum=0.639 GT:AD:DP:GQ:PL 0/1:3,6:9:99.0:154,0,101 1/1:6,237:247:99.0:4532,308,0 0/1:130,117:248:99.0:1399,0,3147 0/1:112,129:244:99.0:2641,0,2556 0/1:115,127:247:99.0:2320,0,2526 0/1:115,128:248:99.0:2546,0,2520 0/1:143,104:249:99.0:1965,0,3288 chr22 42523211 rs2004511 T C 2445.52 . AC=2;AF=0.143;AN=14;BaseQRankSum=10.587;DB;DP=1509;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=102.7564;MQ=221.5;MQ0=0;MQRankSum=-6.926;QD=4.89;ReadPosRankSum=2.057 GT:AD:DP:GQ:PL 0/0:9,0:9:24.06:0,24,289 0/1:136,113:250:99.0:1384,0,2176 0/1:146,104:250:99.0:1108,0,2809 0/0:247,3:250:99.0:0,439,5546 0/0:245,2:249:99.0:0,459,5316 0/0:248,2:250:99.0:0,459,5404 0/0:248,1:250:99.0:0,533,6069 chr22 42523409 rs1985842 G T 6801.9 . AC=6;AF=0.429;AN=14;BaseQRankSum=20.509;DB;DP=1454;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=150.8967;MQ=200.12;MQ0=0;MQRankSum=4.472;QD=5.65;ReadPosRankSum=9.396 GT:AD:DP:GQ:PL 0/1:1,3:4:25.84:53,0,26 0/1:153,95:249:99.0:1597,0,1798 0/0:245,4:250:99.0:0,336,4079 0/1:168,82:250:99.0:1339,0,1880 0/1:147,103:250:99.0:1522,0,1805 0/1:156,94:250:99.0:1341,0,2322 0/1:129,71:201:99.0:949,0,2082 chr22 42523805 rs28371725 C T 1637.33 . AC=1;AF=0.071;AN=14;BaseQRankSum=-0.379;DB;DP=1516;DS;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=77.2321;MQ=226.05;MQ0=0;MQRankSum=2.862;QD=6.55;ReadPosRankSum=0.064 GT:AD:DP:GQ:PL 0/0:16,0:16:39.09:0,39,475 0/0:248,1:249:99.0:0,613,7187 0/1:132,116:248:99.0:1676,0,2916 0/0:248,0:248:99.0:0,625,7171 0/0:248,2:250:99.0:0,604,7252 0/0:250,0:250:99.0:0,631,7426 0/0:248,1:249:99.0:0,584,6964 chr22 42523943 rs16947 A G 23661.1 . AC=8;AF=0.571;AN=14;BaseQRankSum=4.602;DB;DP=1514;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=38.3217;MQ=238.64;MQ0=0;MQRankSum=2.485;QD=15.63;ReadPosRankSum=3.749 GT:AD:DP:GQ:PL 0/1:9,5:14:99.0:163,0,303 1/1:3,246:250:99.0:8092,667,0 0/1:129,116:246:99.0:3190,0,2852 0/1:149,98:247:99.0:2429,0,3588 0/1:129,118:247:99.0:3267,0,3052 0/1:122,123:245:99.0:3428,0,3052 0/1:124,119:244:99.0:3092,0,2845 chr22 42524150 . C G 3758.65 . AC=8;AF=0.571;AN=14;BaseQRankSum=24.314;DP=1506;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=172.5901;MQ=242.92;MQ0=0;MQRankSum=11.537;QD=2.5;ReadPosRankSum=-9.185 GT:AD:DP:GQ:PL 1/1:3,3:6:5.98:46,6,0 0/1:161,88:250:99.0:708,0,300 0/1:161,88:250:99.0:635,0,308 0/1:160,90:250:99.0:658,0,229 0/1:180,69:250:99.0:478,0,113 0/1:176,73:250:99.0:530,0,271 0/1:170,79:249:99.0:704,0,133 chr22 42524435 rs1807313 T A 5252.25 . AC=3;AF=0.214;AN=14;BaseQRankSum=-0.192;DB;DP=1526;DS;Dels=0.01;FS=0.0;HRun=1;HaplotypeScore=152.3866;MQ=242.06;MQ0=0;MQRankSum=1.923;QD=9.99;ReadPosRankSum=3.008 GT:AD:DP:GQ:PL 0/1:7,19:26:99.0:456,0,195 0/0:250,0:250:99.0:0,698,8167 0/0:246,2:249:99.0:0,673,7735 0/0:248,2:250:99.0:0,685,7919 0/0:250,0:250:99.0:0,688,7814 0/1:120,126:247:99.0:2539,0,3250 0/1:131,110:246:99.0:2257,0,3278 chr22 42524696 rs58440431 T C 6423.61 . AC=2;AF=0.143;AN=14;BaseQRankSum=3.119;DB;DP=1509;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=53.0005;MQ=230.78;MQ0=0;MQRankSum=2.825;QD=12.85;ReadPosRankSum=2.051 GT:AD:DP:GQ:PL 0/0:9,0:9:27.08:0,27,351 0/1:132,116:250:99.0:3341,0,3914 0/1:141,108:250:99.0:3082,0,3917 0/0:248,1:250:99.0:0,692,8578 0/0:250,0:250:99.0:0,743,8836 0/0:247,2:250:99.0:0,695,8726 0/0:249,1:250:99.0:0,699,8650 chr22 42524947 rs3892097 C T 731.18 . AC=2;AF=0.143;AN=14;BaseQRankSum=0.602;DB;DP=1495;DS;Dels=0.01;FS=0.0;HRun=1;HaplotypeScore=154.5421;MQ=217.65;MQ0=0;MQRankSum=4.304;QD=1.47;ReadPosRankSum=1.019 GT:AD:DP:GQ:PL 0/0:3,0:3:8.99:0,9,89 0/1:108,75:244:99.0:403,0,1684 0/1:125,74:242:99.0:375,0,2335 0/0:227,1:249:99.0:0,460,5036 0/0:226,1:247:99.0:0,448,4884 0/0:192,1:247:99.0:0,400,4405 0/0:194,1:247:99.0:0,405,4694 chr22 42525132 rs1058164 G C 14639.91 . AC=5;AF=0.357;AN=14;BaseQRankSum=4.944;DB;DP=1508;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=38.1229;MQ=207.02;MQ0=6;MQRankSum=2.51;QD=11.71;ReadPosRankSum=0.306 GT:AD:DP:GQ:PL 0/0:8,0:8:24.05:0,24,309 0/1:125,125:250:99.0:3147,0,3294 0/0:245,1:248:99.0:0,549,7172 0/1:139,109:248:99.0:2470,0,3232 0/1:136,107:243:99.0:2545,0,3408 0/1:116,130:247:99.0:3206,0,2926 0/1:122,124:247:99.0:3271,0,3300 chr22 42525772 rs28371706 G A 7552.52 . AC=4;AF=0.286;AN=14;BaseQRankSum=12.028;DB;DP=1506;DS;Dels=0.01;FS=0.0;HRun=0;HaplotypeScore=89.8512;MQ=222.09;MQ0=0;MQRankSum=5.2;QD=9.99;ReadPosRankSum=2.275 GT:AD:DP:GQ:PL 0/1:4,2:6:29.34:29,0,147 0/0:249,0:249:99.0:0,592,6835 0/0:249,1:250:99.0:0,590,7041 0/0:248,0:248:99.0:0,652,7316 0/1:126,120:248:99.0:2668,0,2833 0/1:134,113:247:99.0:2453,0,2485 0/1:137,113:250:99.0:2403,0,2988 chr22 42525798 rs28371705 G C 1954.58 . AC=2;AF=0.143;AN=14;BaseQRankSum=6.229;DB;DP=1509;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=36.0442;MQ=228.55;MQ0=0;MQRankSum=0.852;QD=3.91;ReadPosRankSum=6.52 GT:AD:DP:GQ:PL 0/0:9,0:9:27.08:0,27,342 0/1:164,85:250:99.0:981,0,3519 0/1:171,79:250:99.0:1020,0,3665 0/0:249,1:250:99.0:0,526,6474 0/0:249,1:250:99.0:0,550,6481 0/0:248,2:250:99.0:0,542,6933 0/0:250,0:250:99.0:0,604,7282 chr22 42525811 rs28371704 T C 3688.26 . AC=2;AF=0.143;AN=14;BaseQRankSum=4.752;DB;DP=1510;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=36.9902;MQ=210.28;MQ0=0;MQRankSum=2.309;QD=7.38;ReadPosRankSum=6.262 GT:AD:DP:GQ:PL 0/0:10,0:10:27.06:0,27,333 0/1:163,86:249:99.0:1958,0,3391 0/1:167,78:245:99.0:1730,0,3945 0/0:248,1:249:99.0:0,542,6887 0/0:246,1:247:99.0:0,550,6569 0/0:247,1:250:99.0:0,548,6954 0/0:249,1:250:99.0:0,557,7079 chr22 42525821 rs28371703 G T 3940.9 . AC=2;AF=0.143;AN=14;BaseQRankSum=4.652;DB;DP=1510;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=34.0483;MQ=210.28;MQ0=0;MQRankSum=2.924;QD=7.88;ReadPosRankSum=5.487 GT:AD:DP:GQ:PL 0/0:10,0:10:24.08:0,24,317 0/1:164,85:250:99.0:2033,0,3659 0/1:167,79:249:99.0:1907,0,4271 0/0:249,1:250:99.0:0,565,7321 0/0:249,1:250:99.0:0,545,7102 0/0:248,2:250:99.0:0,536,7254 0/0:249,0:250:99.0:0,605,7633 chr22 42525952 rs71328650 C A 5872.92 . AC=7;AF=0.5;AN=14;BaseQRankSum=25.986;DB;DP=1505;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=144.2979;MQ=173.55;MQ0=0;MQRankSum=3.66;QD=4.68;ReadPosRankSum=7.152 GT:AD:DP:GQ:PL 1/1:2,3:5:6.0:53,6,0 0/1:132,117:250:99.0:1397,0,702 0/0:248,1:250:99.0:0,245,2219 0/1:166,83:250:99.0:1151,0,934 0/1:164,86:250:99.0:1070,0,1147 0/1:170,80:250:99.0:1009,0,1141 0/1:162,87:250:99.0:1194,0,1085 chr22 42526049 . C G 8544.41 . AC=10;AF=0.714;AN=14;BaseQRankSum=-8.121;DP=1505;DS;Dels=0.01;FS=0.0;HRun=0;HaplotypeScore=241.7335;MQ=162.18;MQ0=2;MQRankSum=-1.399;QD=6.81;ReadPosRankSum=2.132 GT:AD:DP:GQ:PL 1/1:0,5:5:3.0:26,3,0 0/1:86,162:248:99.0:1053,0,1167 0/0:235,12:248:99.0:0,378,3886 0/1:108,137:245:99.0:782,0,1662 1/1:3,242:245:99.0:2351,264,0 1/1:5,245:250:99.0:2193,222,0 1/1:4,242:246:99.0:2140,240,0 chr22 42526449 . T A 151.47 . AC=1;AF=0.071;AN=14;BaseQRankSum=2.662;DP=1226;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=41.2083;MQ=240.47;MQ0=0;MQRankSum=0.578;QD=4.89;ReadPosRankSum=3.611 GT:AD:DP:GQ:PL 0/1:23,8:31:99.0:190,0,694 0/0:188,0:190:99.0:0,478,5376 0/0:187,0:187:99.0:0,493,5322 0/0:247,0:249:99.0:0,634,6728 0/0:185,0:185:99.0:0,487,5515 0/0:202,0:202:99.0:0,520,5857 0/0:181,1:182:99.0:0,440,5362 chr22 42526484 rs28371699 A C 4220.99 . AC=6;AF=0.429;AN=14;BaseQRankSum=-17.855;DB;DP=1532;DS;Dels=0.02;FS=0.0;HRun=0;HaplotypeScore=136.8893;MQ=233.92;MQ0=0;MQRankSum=3.448;QD=3.29;ReadPosRankSum=-2.663 GT:AD:DP:GQ:PL 0/1:16,15:31:99.0:238,0,428 0/1:112,135:247:99.0:796,0,1908 0/0:227,13:241:99.0:0,433,4747 0/1:108,133:242:99.0:588,0,2014 0/1:90,154:245:99.0:1055,0,1892 0/1:112,131:246:99.0:741,0,2222 0/1:108,137:246:99.0:803,0,2266 chr22 42526549 rs56011157 C T 14276.31 . AC=8;AF=0.571;AN=14;BaseQRankSum=17.75;DB;DP=1537;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=87.3394;MQ=231.34;MQ0=0;MQRankSum=4.781;QD=9.29;ReadPosRankSum=7.463 GT:AD:DP:GQ:PL 0/1:22,15:37:99.0:251,0,330 1/1:23,227:250:99.0:5404,430,0 0/1:151,98:250:99.0:1878,0,2475 0/1:153,97:250:99.0:1769,0,2410 0/1:149,100:250:99.0:1792,0,2569 0/1:164,84:250:99.0:1440,0,2646 0/1:149,98:248:99.0:1742,0,2601 chr22 42526561 rs28695233 G T 4524.61 . AC=7;AF=0.5;AN=14;BaseQRankSum=9.714;DB;DP=1538;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=98.8415;MQ=220.45;MQ0=0;MQRankSum=9.43;QD=3.02;ReadPosRankSum=7.682 GT:AD:DP:GQ:PL 0/0:22,15:38:15.74:0,16,609 1/1:4,240:249:99.0:2685,237,0 0/1:142,108:250:99.0:505,0,3133 0/1:138,109:249:99.0:521,0,3281 0/1:150,99:249:99.0:336,0,3601 0/1:153,93:250:99.0:194,0,3695 0/1:148,97:249:99.0:283,0,3093 chr22 42526562 rs75276289 G C 3780.51 . AC=6;AF=0.429;AN=14;BaseQRankSum=15.2;DB;DP=1540;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=116.437;MQ=215.67;MQ0=0;MQRankSum=9.072;QD=2.52;ReadPosRankSum=10.863 GT:AD:DP:GQ:PL 0/0:25,15:40:17.73:0,18,633 0/1:50,199:250:99.0:1522,0,283 0/1:143,106:250:99.0:600,0,2844 0/1:143,107:250:99.0:605,0,3002 0/1:151,99:250:99.0:432,0,3352 0/1:157,93:250:99.0:254,0,3483 0/1:149,99:248:99.0:368,0,2999 chr22 42526567 rs76312385 G A 434.33 . AC=1;AF=0.071;AN=14;BaseQRankSum=18.089;DB;DP=1540;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=89.3746;MQ=219.8;MQ0=0;MQRankSum=6.196;QD=1.74;ReadPosRankSum=7.564 GT:AD:DP:GQ:PL 0/0:22,18:40:4.68:0,5,427 0/1:34,215:250:56.26:473,0,56 0/0:142,108:250:20.78:0,21,2288 0/0:142,108:250:49.48:0,49,2451 0/0:152,97:250:99.0:0,210,2801 0/0:150,100:250:34.96:0,35,2515 0/0:148,102:250:77.19:0,77,2590 chr22 42526571 rs74644586 C G 339.6 . AC=1;AF=0.071;AN=14;BaseQRankSum=-11.48;DB;DP=1540;DS;Dels=0.02;FS=0.0;HRun=4;HaplotypeScore=93.3402;MQ=218.52;MQ0=0;MQRankSum=3.709;QD=1.36;ReadPosRankSum=6.322 GT:AD:DP:GQ:PL 0/0:22,18:40:36.46:0,36,689 0/1:4,232:239:30.49:378,0,30 0/0:138,110:249:99.0:0,295,4017 0/0:137,111:249:99.0:0,250,4041 0/0:147,97:245:99.0:0,321,4348 0/0:150,97:247:99.0:0,358,4657 0/0:144,101:247:99.0:0,275,4123 chr22 42526573 rs1080996 T G 12579.34 . AC=8;AF=0.571;AN=14;BaseQRankSum=6.163;DB;DP=1540;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=76.655;MQ=224.49;MQ0=0;MQRankSum=1.355;QD=8.17;ReadPosRankSum=5.794 GT:AD:DP:GQ:PL 0/1:22,18:40:99.0:200,0,668 1/1:4,244:248:99.0:5175,439,0 0/1:136,110:250:99.0:1862,0,3521 0/1:136,113:249:99.0:1734,0,3677 0/1:144,99:250:99.0:1119,0,3818 0/1:150,99:250:99.0:1196,0,4178 0/1:145,104:250:99.0:1293,0,3628 chr22 42526580 rs1080995 G C 16619.47 . AC=8;AF=0.571;AN=14;BaseQRankSum=7.991;DB;DP=1541;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=56.1489;MQ=221.29;MQ0=0;MQRankSum=2.223;QD=10.78;ReadPosRankSum=4.443 GT:AD:DP:GQ:PL 0/1:22,19:41:99.0:335,0,664 1/1:15,234:250:99.0:5895,337,0 0/1:137,113:250:99.0:2421,0,3301 0/1:134,116:250:99.0:2262,0,3430 0/1:144,105:250:99.0:1929,0,3421 0/1:148,101:250:99.0:1778,0,3867 0/1:142,108:250:99.0:1999,0,3334 chr22 42526634 . T C 32.6 . AC=1;AF=0.071;AN=14;BaseQRankSum=1.147;DP=1225;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=50.0151;MQ=240.65;MQ0=0;MQRankSum=1.151;QD=1.3;ReadPosRankSum=1.276 GT:AD:DP:GQ:PL 0/1:21,4:25:71.04:71,0,702 0/0:187,2:189:99.0:0,481,6080 0/0:233,0:233:99.0:0,667,7351 0/0:230,0:230:99.0:0,667,7394 0/0:174,1:175:99.0:0,446,5469 0/0:194,2:196:99.0:0,498,6239 0/0:174,0:175:99.0:0,511,5894 chr22 42526679 . G C 60.6 . AC=1;AF=0.071;AN=14;BaseQRankSum=-12.425;DP=1525;DS;Dels=0.09;FS=0.0;HRun=1;HaplotypeScore=331.3182;MQ=215.48;MQ0=0;MQRankSum=-14.68;QD=0.24;ReadPosRankSum=-13.323 GT:AD:DP:GQ:PL 0/0:23,0:23:66.17:0,66,829 0/1:175,56:232:99.0:99,0,4273 0/0:199,26:226:76.45:0,76,5104 0/0:196,37:233:41.98:0,42,5109 0/0:170,47:218:99.0:0,162,4505 0/0:188,36:224:99.0:0,230,4974 0/0:177,47:225:99.0:0,167,4592 chr22 42526694 rs1065852 G A 4420.63 . AC=2;AF=0.143;AN=14;BaseQRankSum=8.566;DB;DP=1529;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=117.6833;MQ=214.96;MQ0=0;MQRankSum=5.852;QD=8.84;ReadPosRankSum=1.454 GT:AD:DP:GQ:PL 0/0:29,0:29:81.24:0,81,1040 0/1:136,114:250:99.0:2333,0,3170 0/1:145,104:250:99.0:2087,0,2794 0/0:250,0:250:99.0:0,586,6963 0/0:247,2:250:99.0:0,497,6185 0/0:248,2:250:99.0:0,544,6640 0/0:250,0:250:99.0:0,571,6444 chr22 42527471 rs28633410 T C 26831.16 . AC=10;AF=0.833;AN=12;BaseQRankSum=-1.092;DB;DP=1501;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=79.3853;MQ=176.86;MQ0=0;MQRankSum=-2.644;QD=17.89;ReadPosRankSum=2.185 GT:AD:DP:GQ:PL ./.:.:.:.:. 1/1:1,249:250:99.0:5741,478,0 0/1:102,148:250:99.0:3026,0,1748 0/1:115,132:250:99.0:2716,0,1896 1/1:1,249:250:99.0:5040,392,0 1/1:1,248:250:99.0:5109,427,0 1/1:4,245:249:99.0:5199,306,0 chr22 42527533 rs28624811 A G 13619.46 . AC=7;AF=0.583;AN=12;BaseQRankSum=-8.893;DB;DP=1501;DS;Dels=0.01;FS=0.0;HRun=1;HaplotypeScore=86.1948;MQ=179.18;MQ0=0;MQRankSum=0.472;QD=9.08;ReadPosRankSum=0.778 GT:AD:DP:GQ:PL ./.:.:.:.:. 1/1:2,241:243:99.0:4171,416,0 0/1:113,132:245:99.0:2000,0,2018 0/1:120,126:246:99.0:1781,0,1970 0/1:131,118:249:99.0:1885,0,1784 0/1:122,126:248:99.0:1893,0,1807 0/1:122,127:249:99.0:1890,0,2119 chr22 42527793 rs1080989 C T 3454.66 . AC=2;AF=0.167;AN=12;BaseQRankSum=-3.007;DB;DP=1074;DS;Dels=0.01;FS=0.0;HRun=1;HaplotypeScore=75.7865;MQ=209.0;MQ0=0;MQRankSum=3.014;QD=9.36;ReadPosRankSum=0.618 GT:AD:DP:GQ:PL ./.:.:.:.:. 0/1:72,90:162:99.0:1699,0,1767 0/1:103,96:202:99.0:1756,0,2532 0/0:188,0:188:99.0:0,526,5889 0/0:160,0:160:99.0:0,457,4983 0/0:197,0:198:99.0:0,544,6100 0/0:156,0:156:99.0:0,439,5041 chr22 42527891 . T A 109.83 . AC=5;AF=0.417;AN=12;BaseQRankSum=11.235;DP=1500;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=638.4601;MQ=166.82;MQ0=0;MQRankSum=1.444;QD=0.09;ReadPosRankSum=0.839 GT:AD:DP:GQ:PL ./.:.:.:.:. 0/1:238,7:248:13.7:14,0,38 0/0:246,3:250:5.97:0,6,45 0/1:239,11:250:31.42:31,0,54 0/1:232,16:250:49.09:49,0,76 0/1:233,14:249:52.1:52,0,53 0/1:238,11:250:12.71:13,0,36 /usr/lib/python3.6/unittest/case.py:605: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<>/.pybuild/pythonX.Y_3.6/build/vcf/test/gatk.vcf' mode='rt' encoding='UTF-8'> testMethod() ok testWrite (vcf.test.test_vcf.TestBcfToolsOutputWriter) ... ##fileformat=VCFv4.1 ##samtoolsVersion=0.1.18 (r982:295) ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT sample MT 1 . G . 283 . DP=245;DP4=240,0,0,0;MQ=30;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 2 . A . 283 . DP=250;DP4=247,0,0,0;MQ=31;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 3 . T . 283 . DP=253;DP4=252,0,0,0;MQ=31;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 4 . C . 283 . DP=257;DP4=253,0,0,0;MQ=32;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 5 . A . 283 . DP=263;DP4=258,0,0,0;MQ=32;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 6 . C . 283 . DP=268;DP4=259,0,0,0;MQ=33;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 7 . A . 283 . DP=272;DP4=265,0,2,0;MQ=34;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.9e-05,0.32,1.0;VDB=0.0111 PL 0 MT 8 . G . 283 . DP=275;DP4=272,0,0,0;MQ=34;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 9 . G . 283 . DP=276;DP4=266,0,1,0;MQ=34;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.006,0.36,0.13 PL 0 MT 10 . T . 283 . DP=277;DP4=269,0,1,0;MQ=34;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,3.7e-05,0.36,1.0;VDB=0.0 PL 0 MT 11 . C . 283 . DP=279;DP4=274,0,1,0;MQ=34;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0031,0.36,0.12 PL 0 MT 12 . T . 283 . DP=286;DP4=284,0,0,0;MQ=35;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 13 . A . 283 . DP=289;DP4=281,0,0,0;MQ=36;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 14 . T . 283 . DP=290;DP4=288,0,0,0;MQ=36;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 15 . C . 283 . DP=290;DP4=280,0,0,0;MQ=36;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 16 . A . 283 . DP=293;DP4=290,0,0,0;MQ=36;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 17 . C . 283 . DP=297;DP4=290,0,0,0;MQ=36;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0111 PL 0 MT 18 . C . 283 . DP=298;DP4=284,0,0,0;MQ=37;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 19 . C . 283 . DP=301;DP4=293,0,1,0;MQ=37;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.0,0.32,0.38;VDB=0.0111 PL 0 MT 20 . T . 283 . DP=311;DP4=307,0,0,0;MQ=37;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 21 . A . 283 . DP=311;DP4=305,0,0,0;MQ=38;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 22 . T . 283 . DP=305;DP4=303,0,0,0;MQ=38;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 23 . T . 283 . DP=309;DP4=305,0,0,0;MQ=38;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 24 . A . 283 . DP=309;DP4=301,0,0,0;MQ=39;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 25 . A . 283 . DP=308;DP4=302,0,1,0;MQ=39;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.2e-09,0.28,1.0 PL 0 MT 26 . C . 283 . DP=309;DP4=302,0,0,0;MQ=39;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 27 . C . 283 . DP=307;DP4=293,0,0,0;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 28 . A . 283 . DP=309;DP4=305,0,0,0;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 29 . C . 283 . DP=308;DP4=302,0,0,0;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 30 . T . 283 . DP=305;DP4=303,0,0,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 31 . C . 283 . DP=302;DP4=293,0,0,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 32 . A . 283 . DP=303;DP4=294,0,0,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 33 . C . 283 . DP=300;DP4=287,0,0,0;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 34 . G . 280 . DP=296;DP4=288,0,0,0;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 35 . G . 283 . DP=296;DP4=280,0,0,0;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0111 PL 0 MT 36 . G . 283 . DP=291;DP4=272,0,0,0;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 37 . A . 283 . DP=290;DP4=276,0,1,0;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00038,0.22,1.0;VDB=0.0212 PL 0 MT 38 . G . 283 . DP=288;DP4=282,0,0,0;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 39 . C . 283 . DP=289;DP4=264,0,2,0;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,8.3e-11,1.0,1.0;VDB=0.004 PL 0 MT 40 . T . 283 . DP=288;DP4=285,0,0,0;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 41 . C . 283 . DP=284;DP4=276,0,0,0;MQ=45;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 42 . T . 283 . DP=279;DP4=277,0,0,0;MQ=45;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 43 . C . 283 . DP=279;DP4=268,0,0,0;MQ=46;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 44 . C . 283 . DP=280;DP4=265,0,1,0;MQ=46;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0064,0.17,1.0 PL 0 MT 45 . A . 283 . DP=279;DP4=272,0,0,0;MQ=47;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 46 . T . 283 . DP=279;DP4=276,0,0,0;MQ=47;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 47 . G . 283 . DP=280;DP4=277,0,0,0;MQ=47;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 48 . C . 283 . DP=281;DP4=271,0,0,0;MQ=48;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 49 . A . 283 . DP=278;DP4=272,0,0,0;MQ=48;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0051 PL 0 MT 50 . T . 283 . DP=276;DP4=274,0,0,0;MQ=48;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 51 . T . 283 . DP=271;DP4=261,0,0,0;MQ=49;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 52 . T . 283 . DP=271;DP4=262,0,0,0;MQ=49;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 53 . G . 283 . DP=273;DP4=271,0,0,0;MQ=49;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 54 . G . 283 . DP=274;DP4=264,0,0,0;MQ=49;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 55 . T . 283 . DP=271;DP4=268,0,0,0;MQ=50;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 56 . A . 283 . DP=274;DP4=266,0,0,0;MQ=50;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 57 . T . 283 . DP=272;DP4=270,0,0,0;MQ=50;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 58 . T . 283 . DP=273;DP4=266,0,0,0;MQ=50;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 59 . T . 283 . DP=277;DP4=272,0,0,0;MQ=50;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 60 . T . 283 . DP=279;DP4=272,0,0,0;MQ=50;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 61 . C . 283 . DP=285;DP4=275,0,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 62 . G . 283 . DP=285;DP4=278,0,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.3e-08,0.097,0.066 PL 0 MT 63 . T . 283 . DP=285;DP4=285,0,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 64 . C . 283 . DP=283;DP4=276,0,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 65 . T . 283 . DP=277;DP4=277,0,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 66 . G . 283 . DP=276;DP4=274,0,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 67 . G . 283 . DP=275;DP4=264,0,0,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 68 . G . 283 . DP=281;DP4=265,0,0,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 69 . G . 283 . DP=288;DP4=269,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 70 . G . 283 . DP=296;DP4=275,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 71 . G . 283 . DP=300;DP4=272,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 72 . T . 283 . DP=301;DP4=285,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0367 PL 0 MT 73 . A . 283 . DP=295;DP4=283,0,1,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0066,1.0,1.0 PL 0 MT 74 . T . 283 . DP=298;DP4=298,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 75 . G . 283 . DP=300;DP4=299,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 76 . C . 283 . DP=304;DP4=281,0,2,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,8.3e-13,1.0,1.0;VDB=0.0342 PL 0 MT 77 . A . 283 . DP=303;DP4=293,0,1,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00064,0.019,0.25;VDB=0.02 PL 0 MT 78 . C . 283 . DP=302;DP4=283,0,3,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,4.1e-13,0.21,0.36;VDB=0.0026 PL 0 MT 79 . G . 283 . DP=301;DP4=285,0,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 80 . C . 283 . DP=308;DP4=286,0,1,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,9.8e-07,0.0098,0.14;VDB=0.0217 PL 0 MT 81 . G . 282 . DP=314;DP4=302,0,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 82 . A . 283 . DP=313;DP4=296,0,2,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.013,0.069,0.1;VDB=0.0049 PL 0 MT 83 . T . 283 . DP=316;DP4=313,0,2,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0029,1.0,1.0;VDB=0.02 PL 0 MT 84 . A . 283 . DP=316;DP4=302,0,1,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.3e-05,0.0044,1.0 PL 0 MT 85 . G . 283 . DP=314;DP4=314,0,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 86 . C . 283 . DP=318;DP4=297,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0198 PL 0 MT 87 . A . 283 . DP=324;DP4=316,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 88 . T . 283 . DP=326;DP4=325,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 89 . T . 283 . DP=328;DP4=313,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.3e-08,1.0,0.064 PL 0 MT 90 . G . 283 . DP=329;DP4=326,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0193 PL 0 MT 91 . C . 283 . DP=328;DP4=310,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,4.2e-05,1.0,0.37 PL 0 MT 92 . G . 278 . DP=327;DP4=314,0,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.17,1.0,0.2;VDB=0.0237 PL 0 MT 93 . A . 283 . DP=328;DP4=310,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 94 . G . 283 . DP=327;DP4=327,0,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 95 . A . 283 . DP=323;DP4=308,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,4.8e-05,0.002,1.0 PL 0 MT 96 . C . 283 . DP=323;DP4=305,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.17,1.0,1.0 PL 0 MT 97 . G . 275 . DP=321;DP4=311,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 98 . C . 283 . DP=322;DP4=301,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0006 PL 0 MT 99 . T . 283 . DP=327;DP4=327,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 100 . G . 283 . DP=332;DP4=332,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 101 . G . 283 . DP=332;DP4=306,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 102 . A . 283 . DP=331;DP4=290,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.005 PL 0 MT 103 . G . 283 . DP=329;DP4=321,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0342 PL 0 MT 104 . C . 283 . DP=330;DP4=273,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0026,1.0,0.047;VDB=0.0003 PL 0 MT 105 . C . 283 . DP=338;DP4=302,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 106 . G . 283 . DP=343;DP4=314,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 107 . G . 283 . DP=344;DP4=300,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 108 . A . 283 . DP=347;DP4=305,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0302 PL 0 MT 109 . G . 283 . DP=348;DP4=344,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 110 . C . 283 . DP=341;DP4=279,0,2,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,6.4e-06,1.4e-08,1.0;VDB=0.0445 PL 0 MT 111 . A . 283 . DP=343;DP4=321,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0233 PL 0 MT 112 . C . 283 . DP=348;DP4=300,0,3,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,3.2e-08,7.4e-07,0.16;VDB=0.0169 PL 0 MT 113 . C . 283 . DP=350;DP4=307,0,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,4.8e-08,1.0,0.38;VDB=0.0252 PL 0 MT 114 . C . 283 . DP=351;DP4=307,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 115 . T . 283 . DP=351;DP4=346,0,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0025 PL 0 MT 116 . A . 283 . DP=352;DP4=317,0,3,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,8.3e-07,0.0073,0.45;VDB=0.0183 PL 0 MT 117 . T . 283 . DP=355;DP4=351,0,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0025 PL 0 MT 118 . G . 283 . DP=352;DP4=348,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0306 PL 0 MT 119 . T . 283 . DP=353;DP4=345,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.005,1.0,1.0;VDB=0.0335 PL 0 MT 120 . C . 283 . DP=354;DP4=331,0,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00033,1.0,0.14;VDB=0.044 PL 0 MT 121 . G . 283 . DP=356;DP4=311,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 122 . C . 283 . DP=353;DP4=304,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0064,1.0,0.29;VDB=0.0237 PL 0 MT 123 . A . 283 . DP=357;DP4=332,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0141 PL 0 MT 124 . G . 283 . DP=357;DP4=353,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 125 . T . 283 . DP=359;DP4=347,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0037,1.0,1.0;VDB=0.0302 PL 0 MT 126 . A . 283 . DP=360;DP4=327,0,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00072,0.0069,0.13;VDB=0.0215 PL 0 MT 127 . T . 283 . DP=358;DP4=355,0,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,9.7e-05,5e-08,0.14;VDB=0.0245 PL 0 MT 128 . C . 283 . DP=360;DP4=336,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0335 PL 0 MT 129 . T . 283 . DP=360;DP4=356,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00053,0.0013,1.0 PL 0 MT 130 . G . 283 . DP=357;DP4=355,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0141 PL 0 MT 131 . T . 283 . DP=360;DP4=351,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0057 PL 0 MT 132 . C . 283 . DP=359;DP4=338,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0367 PL 0 MT 133 . T . 283 . DP=358;DP4=353,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00063,0.0012,1.0;VDB=0.0033 PL 0 MT 134 . T . 283 . DP=357;DP4=326,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 135 . T . 283 . DP=356;DP4=322,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 136 . G . 283 . DP=358;DP4=353,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 137 . A . 283 . DP=358;DP4=317,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0044 PL 0 MT 138 . T . 283 . DP=358;DP4=355,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.025 PL 0 MT 139 . T . 283 . DP=360;DP4=328,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 140 . C . 283 . DP=356;DP4=338,0,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0065,2.6e-06,0.23;VDB=0.0367 PL 0 MT 141 . C . 283 . DP=360;DP4=321,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.012,1.0,0.13 PL 0 MT 142 . T . 283 . DP=362;DP4=357,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0342 PL 0 MT 143 . G . 283 . DP=360;DP4=353,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0017,1.0,0.18;VDB=0.0183 PL 0 MT 144 . C . 283 . DP=364;DP4=325,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0101 PL 0 MT 145 . C . 283 . DP=363;DP4=330,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0063 PL 0 MT 146 . T . 283 . DP=361;DP4=358,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0207 PL 0 MT 147 . C . 283 . DP=362;DP4=357,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 148 . A . 283 . DP=363;DP4=347,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0051 PL 0 MT 149 . T . 283 . DP=363;DP4=363,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 150 . C . 283 . DP=363;DP4=350,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0168 PL 0 MT 151 . C . 283 . DP=359;DP4=337,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,6.7e-05,1.0,0.077 PL 0 MT 152 . T . 283 . DP=355;DP4=352,0,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.028,1.0,1.0;VDB=0.0237 PL 0 MT 153 . A . 283 . DP=354;DP4=327,0,5,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.001,0.15,0.009;VDB=0.0115 PL 0 MT 154 . T . 283 . DP=353;DP4=349,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0051 PL 0 MT 155 . T . 283 . DP=357;DP4=343,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 156 . A . 283 . DP=357;DP4=337,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.021 PL 0 MT 157 . T . 283 . DP=356;DP4=355,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 158 . T . 283 . DP=351;DP4=333,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 159 . T . 283 . DP=343;DP4=321,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 160 . A . 283 . DP=337;DP4=313,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 161 . T . 283 . DP=336;DP4=334,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,7.6e-06,1.0,1.0 PL 0 MT 162 . C . 283 . DP=333;DP4=314,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0245 PL 0 MT 163 . G . 278 . DP=328;DP4=308,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.02 PL 0 MT 164 . C . 283 . DP=328;DP4=306,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0212 PL 0 MT 165 . A . 283 . DP=330;DP4=319,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0026,1.0,0.18;VDB=0.0167 PL 0 MT 166 . C . 283 . DP=332;DP4=308,0,2,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.6e-07,1.0,1.0;VDB=0.0134 PL 0 MT 167 . C . 283 . DP=330;DP4=310,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,3e-05,1.0,1.0 PL 0 MT 168 . T . 283 . DP=329;DP4=329,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 169 . A . 283 . DP=332;DP4=314,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 170 . C . 283 . DP=327;DP4=307,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0013,1.0,1.0;VDB=0.0144 PL 0 MT 171 . G . 283 . DP=326;DP4=315,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 172 . T . 283 . DP=325;DP4=323,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0086 PL 0 MT 173 . T . 283 . DP=324;DP4=311,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 174 . C . 283 . DP=321;DP4=307,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.4e-06,1.0,0.32;VDB=0.0227 PL 0 MT 175 . A . 283 . DP=323;DP4=312,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0183 PL 0 MT 176 . A . 283 . DP=320;DP4=306,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00011,1.0,1.0 PL 0 MT 177 . T . 283 . DP=317;DP4=317,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 178 . A . 283 . DP=321;DP4=313,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 179 . T . 283 . DP=322;DP4=322,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 180 . T . 283 . DP=324;DP4=307,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 181 . A . 283 . DP=323;DP4=311,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 182 . C . 283 . DP=323;DP4=302,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.12,1.7e-06,1.0;VDB=0.016 PL 0 MT 183 . A . 283 . DP=326;DP4=318,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0096 PL 0 MT 184 . G . 283 . DP=328;DP4=325,0,2,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1e-05,1.0,0.37;VDB=0.0128 PL 0 MT 185 . G . 283 . DP=328;DP4=298,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,4.8e-06,1.0,1.0 PL 0 MT 186 . C . 283 . DP=324;DP4=295,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0238 PL 0 MT 187 . G . 283 . DP=325;DP4=305,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 188 . A . 283 . DP=326;DP4=301,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0032,1.0,1.0;VDB=0.0335 PL 0 MT 189 . A . 283 . DP=324;DP4=300,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 190 . C . 283 . DP=322;DP4=298,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,3.9e-06,7.9e-07,1.0;VDB=0.0192 PL 0 MT 191 . A . 283 . DP=324;DP4=313,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0009 PL 0 MT 192 . T . 283 . DP=321;DP4=320,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 193 . A . 283 . DP=329;DP4=307,0,2,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.003,1.0,0.11;VDB=0.0299 PL 0 MT 194 . C . 283 . DP=332;DP4=301,0,2,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,3e-05,1.0,0.071;VDB=0.0429 PL 0 MT 195 . T . 283 . DP=329;DP4=327,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0121 PL 0 MT 196 . T . 283 . DP=326;DP4=308,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 197 . A . 283 . DP=328;DP4=311,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 198 . C . 283 . DP=329;DP4=310,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.3e-05,1.0,0.25;VDB=0.0187 PL 0 MT 199 . T . 283 . DP=329;DP4=327,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 200 . A . 283 . DP=333;DP4=321,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.022 PL 0 MT 201 . A . 283 . DP=331;DP4=315,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 202 . A . 283 . DP=332;DP4=311,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 203 . G . 283 . DP=327;DP4=324,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0021,1.0,0.093;VDB=0.0123 PL 0 MT 204 . T . 283 . DP=326;DP4=318,0,2,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.1e-05,9.1e-07,0.23;VDB=0.0025 PL 0 MT 205 . G . 283 . DP=329;DP4=326,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 206 . T . 283 . DP=331;DP4=322,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00013,2.1e-07,0.23;VDB=0.0044 PL 0 MT 207 . G . 283 . DP=333;DP4=330,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 208 . T . 283 . DP=332;DP4=332,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 209 . T . 283 . DP=332;DP4=318,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 210 . A . 283 . DP=332;DP4=319,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.9e-05,2.5e-06,1.0 PL 0 MT 211 . A . 283 . DP=334;DP4=324,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 212 . T . 283 . DP=335;DP4=335,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 213 . T . 283 . DP=335;DP4=325,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 214 . A . 283 . DP=338;DP4=330,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 215 . A . 283 . DP=333;DP4=323,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 216 . T . 283 . DP=331;DP4=331,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 217 . T . 283 . DP=332;DP4=324,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 218 . A . 283 . DP=332;DP4=327,0,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,3.1e-12,0.00014,0.25;VDB=0.0072 PL 0 MT 219 . A . 283 . DP=331;DP4=324,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 220 . T . 283 . DP=331;DP4=330,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,4.3e-07,0.00018,0.4 PL 0 MT 221 . G . 283 . DP=330;DP4=328,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 222 . C . 283 . DP=333;DP4=320,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0248 PL 0 MT 223 . T . 283 . DP=329;DP4=327,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0198 PL 0 MT 224 . T . 283 . DP=328;DP4=320,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 225 . G . 283 . DP=331;DP4=330,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 226 . T . 283 . DP=329;DP4=327,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 227 . A . 283 . DP=324;DP4=316,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 228 . G . 283 . DP=321;DP4=320,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2e-06,0.00026,1.0 PL 0 MT 229 . G . 283 . DP=318;DP4=304,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 230 . A . 283 . DP=320;DP4=311,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 231 . C . 283 . DP=319;DP4=309,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 232 . A . 283 . DP=317;DP4=309,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 233 . T . 283 . DP=319;DP4=319,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 234 . A . 283 . DP=314;DP4=308,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 235 . A . 283 . DP=314;DP4=307,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 236 . T . 283 . DP=318;DP4=317,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,4.1e-10,1.0,0.44 PL 0 MT 237 . A . 283 . DP=320;DP4=313,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00077,1.0,0.1;VDB=0.0168 PL 0 MT 238 . A . 283 . DP=318;DP4=313,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 239 . T . 283 . DP=316;DP4=316,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 240 . A . 283 . DP=315;DP4=310,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 241 . A . 283 . DP=314;DP4=309,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.036,1.0,1.0;VDB=0.016 PL 0 MT 242 . C . 283 . DP=314;DP4=305,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0183 PL 0 MT 243 . A . 283 . DP=316;DP4=313,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 244 . A . 283 . DP=320;DP4=314,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 245 . T . 283 . DP=316;DP4=316,0,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 246 . T . 283 . DP=319;DP4=311,0,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 247 . G . 283 . DP=323;DP4=322,0,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 248 . A . 283 . DP=327;DP4=320,0,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 249 . A . 283 . DP=328;DP4=318,0,1,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.7e-07,0.00026,1.0 PL 0 MT 250 . T . 283 . DP=326;DP4=324,0,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 251 . G . 283 . DP=323;DP4=323,0,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 252 . T . 283 . DP=324;DP4=322,0,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0217 PL 0 MT 253 . C . 283 . DP=328;DP4=322,0,1,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,5.7e-05,1.0,0.41;VDB=0.0158 PL 0 MT 254 . T . 283 . DP=324;DP4=324,0,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 255 . G . 283 . DP=319;DP4=318,0,1,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.7e-08,1.0,0.033 PL 0 MT 256 . C . 283 . DP=312;DP4=303,0,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 257 . A . 283 . DP=312;DP4=307,0,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 258 . C . 283 . DP=313;DP4=303,0,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 259 . A . 283 . DP=312;DP4=300,0,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0069 PL 0 MT 260 . G . 283 . DP=309;DP4=307,0,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 261 . C . 283 . DP=303;DP4=290,0,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 262 . C . 283 . DP=303;DP4=286,0,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 263 . A G 210 . DP=302;DP4=0,0,289,0;MQ=56;FQ=-282.0;AF1=1.0;AC1=2.0;VDB=0.0417 GT:PL:GQ 1/1:243,255,0:99 MT 264 . C . 283 . DP=309;DP4=290,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.018 PL 0 MT 265 . T . 283 . DP=311;DP4=310,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 266 . T . 283 . DP=311;DP4=298,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 267 . T . 283 . DP=310;DP4=293,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 268 . C . 283 . DP=308;DP4=298,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0214 PL 0 MT 269 . C . 283 . DP=307;DP4=293,0,2,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.4e-10,1.0,0.1;VDB=0.0183 PL 0 MT 270 . A . 283 . DP=306;DP4=300,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 271 . C . 283 . DP=307;DP4=298,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 272 . A . 283 . DP=308;DP4=300,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 273 . C . 283 . DP=306;DP4=296,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 274 . A . 283 . DP=303;DP4=294,0,1,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0016,0.05,1.0 PL 0 MT 275 . G . 283 . DP=308;DP4=306,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 276 . A . 283 . DP=308;DP4=289,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0253 PL 0 MT 277 . C . 283 . DP=307;DP4=291,0,1,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.04,1.0,0.18;VDB=0.0163 PL 0 MT 278 . A . 283 . DP=305;DP4=295,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0144 PL 0 MT 279 . T . 283 . DP=303;DP4=303,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 280 . C . 283 . DP=300;DP4=296,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 281 . A . 283 . DP=298;DP4=294,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 282 . T . 283 . DP=298;DP4=298,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 283 . A . 283 . DP=292;DP4=281,0,2,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.5e-06,0.094,0.37;VDB=0.0183 PL 0 MT 284 . A . 283 . DP=287;DP4=278,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 285 . C . 283 . DP=283;DP4=278,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0121 PL 0 MT 286 . A . 283 . DP=279;DP4=274,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 287 . A . 283 . DP=273;DP4=265,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 288 . A . 283 . DP=270;DP4=260,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 289 . A . 283 . DP=267;DP4=252,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0106 PL 0 MT 290 . A . 283 . DP=261;DP4=250,0,0,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0133 PL 0 MT 291 . A . 283 . DP=259;DP4=247,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 292 . T . 283 . DP=255;DP4=255,0,0,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 293 . T . 283 . DP=259;DP4=246,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 294 . T . 283 . DP=257;DP4=245,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 295 . C . 283 . DP=254;DP4=246,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 296 . C . 283 . DP=253;DP4=234,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 297 . A . 283 . DP=253;DP4=244,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0099 PL 0 MT 298 . C . 283 . DP=253;DP4=236,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0168 PL 0 MT 299 . C . 283 . DP=251;DP4=229,0,1,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0068,1.0,1.0 PL 0 MT 300 . A . 283 . DP=249;DP4=237,0,0,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 301 . A . 283 . DP=248;DP4=223,0,1,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.3e-05,0.058,0.12;VDB=0.0369 PL 0 MT 302 . A . 283 . DP=248;DP4=221,0,1,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,8.3e-05,0.057,0.14;VDB=0.0227 PL 0 MT 302 . ACCCCCCC . 84.6 . DP=248;DP4=26,0,2,0;MQ=47;FQ=-88.5;AF1=0.0;AC1=0.0;PV4=1.0,1.0,1.0,0.21;INDEL;VDB=0.0435 PL 0 MT 303 . C . 283 . DP=244;DP4=205,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 304 . C . 283 . DP=242;DP4=197,0,1,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0027,0.0048,1.0;VDB=0.01 PL 0 MT 304 . C . 85.5 . DP=242;DP4=59,0,1,0;MQ=53;FQ=-197.0;AF1=0.0;AC1=0.0;PV4=1.0,0.22,1.0,1.0;INDEL;VDB=0.0435 PL 0 MT 305 . C . 283 . DP=250;DP4=193,0,2,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00014,1.0,0.3;VDB=0.0158 PL 0 MT 306 . C . 283 . DP=252;DP4=194,0,2,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00023,1.0,0.11;VDB=0.0111 PL 0 MT 307 . C . 283 . DP=252;DP4=190,0,3,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2e-06,0.0019,0.34;VDB=0.0284 PL 0 MT 308 . C . 283 . DP=255;DP4=175,0,2,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.9e-06,1.0,0.11;VDB=0.009 PL 0 MT 309 . C . 283 . DP=257;DP4=176,0,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0001 PL 0 MT 310 . T . 283 . DP=260;DP4=204,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0268 PL 0 MT 311 . C . 105 . DP=265;DP4=25,0,0,0;MQ=53;FQ=-102.0;AF1=0.0;AC1=0.0;VDB=0.0195 PL 0 MT 312 . C . 102 . DP=271;DP4=23,1,0,0;MQ=58;FQ=-99.0;AF1=0.0;AC1=0.0 PL 0 MT 313 . C . 132 . DP=282;DP4=33,1,0,0;MQ=59;FQ=-129.0;AF1=0.0;AC1=0.0 PL 0 MT 314 . C . 138 . DP=280;DP4=35,1,0,0;MQ=58;FQ=-135.0;AF1=0.0;AC1=0.0 PL 0 MT 315 . C . 147 . DP=281;DP4=38,1,0,0;MQ=58;FQ=-144.0;AF1=0.0;AC1=0.0 PL 0 MT 316 . G . 255 . DP=270;DP4=199,1,2,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0058,0.075,1.0;VDB=0.0233 PL 0 MT 317 . C . 283 . DP=278;DP4=221,2,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0227 PL 0 MT 318 . T . 283 . DP=286;DP4=267,2,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0367 PL 0 MT 319 . T . 283 . DP=287;DP4=236,2,2,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,5.5e-08,0.011,0.33;VDB=0.0449 PL 0 MT 320 . C . 283 . DP=288;DP4=263,3,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0233 PL 0 MT 321 . T . 283 . DP=289;DP4=270,3,1,1;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.029,0.00028,0.12,0.0089;VDB=0.0302 PL 0 MT 322 . G . 283 . DP=290;DP4=258,4,4,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,6.5e-05,1.4e-06,1.0;VDB=0.0093 PL 0 MT 323 . G . 283 . DP=291;DP4=212,5,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0081 PL 0 MT 324 . C . 283 . DP=292;DP4=231,5,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0031,1.0,0.26;VDB=0.0099 PL 0 MT 325 . C . 283 . DP=295;DP4=236,10,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,8.7e-06,2.3e-05,0.47;VDB=0.0128 PL 0 MT 326 . A . 283 . DP=298;DP4=257,14,3,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0039,1.0,1.0;VDB=0.0449 PL 0 MT 327 . C . 283 . DP=307;DP4=238,18,2,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00016,0.077,0.41;VDB=0.0302 PL 0 MT 328 . A . 283 . DP=311;DP4=258,19,1,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.023,1.0,1.0;VDB=0.0115 PL 0 MT 329 . G . 283 . DP=316;DP4=279,16,3,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00045,0.017,1.0;VDB=0.0335 PL 0 MT 330 . C . 283 . DP=322;DP4=237,22,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0115 PL 0 MT 331 . A . 283 . DP=332;DP4=268,25,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0302 PL 0 MT 332 . C . 283 . DP=337;DP4=257,28,1,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00057,0.00021,0.22;VDB=0.0104 PL 0 MT 333 . T . 283 . DP=339;DP4=305,24,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0005 PL 0 MT 334 . T . 283 . DP=349;DP4=275,31,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0106 PL 0 MT 335 . A . 283 . DP=356;DP4=283,32,1,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.037,0.014,1.0;VDB=0.0057 PL 0 MT 336 . A . 283 . DP=361;DP4=279,34,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 337 . A . 283 . DP=359;DP4=278,40,1,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.16,1.0,0.093;VDB=0.0022 PL 0 MT 338 . C . 283 . DP=359;DP4=267,41,3,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,3.1e-06,1.0,1.0;VDB=0.0302 PL 0 MT 339 . A . 283 . DP=365;DP4=295,45,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0242 PL 0 MT 340 . C . 283 . DP=372;DP4=284,51,1,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00047,0.025,1.0;VDB=0.0169 PL 0 MT 341 . A . 283 . DP=378;DP4=299,54,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0325 PL 0 MT 342 . T . 283 . DP=385;DP4=321,47,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0324 PL 0 MT 343 . C . 283 . DP=387;DP4=298,62,2,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,9.5e-06,1.0,0.48;VDB=0.0169 PL 0 MT 344 . T . 283 . DP=392;DP4=319,49,1,1;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.25,6.8e-05,0.16,1.0;VDB=0.0394 PL 0 MT 345 . C . 283 . DP=403;DP4=314,70,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 346 . T . 283 . DP=412;DP4=335,70,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0124 PL 0 MT 347 . G . 283 . DP=418;DP4=290,71,5,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.59,6.4e-09,0.002,1.0;VDB=0.0335 PL 0 MT 348 . C . 283 . DP=429;DP4=300,80,1,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0017,1.0,0.19 PL 0 MT 349 . C . 283 . DP=441;DP4=312,87,1,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.7e-05,0.043,1.0;VDB=0.0396 PL 0 MT 350 . A . 283 . DP=451;DP4=333,83,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0115 PL 0 MT 351 . A . 283 . DP=456;DP4=322,89,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0445 PL 0 MT 352 . A . 283 . DP=458;DP4=321,98,0,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0245 PL 0 MT 353 . C . 283 . DP=467;DP4=317,100,0,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0449 PL 0 MT 354 . C . 283 . DP=481;DP4=328,104,1,1;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.43,0.00091,0.012,1.0;VDB=0.0447 PL 0 MT 355 . C . 283 . DP=483;DP4=339,104,0,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 356 . C . 283 . DP=494;DP4=340,122,1,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.023,1.0,0.026;VDB=0.0166 PL 0 MT 357 . A . 283 . DP=500;DP4=353,115,2,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.4e-06,1.0,1.0;VDB=0.0073 PL 0 MT 358 . A . 283 . DP=503;DP4=357,115,0,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0063 PL 0 MT 359 . A . 283 . DP=507;DP4=348,119,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0146 PL 0 MT 360 . A . 283 . DP=515;DP4=355,125,1,1;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.45,2.4e-06,0.29,0.0068;VDB=0.009 PL 0 MT 361 . A . 283 . DP=516;DP4=359,134,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.003 PL 0 MT 362 . C . 283 . DP=522;DP4=361,138,1,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,5.4e-06,0.078,1.0 PL 0 MT 363 . A . 283 . DP=528;DP4=380,128,1,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.2e-05,0.072,0.067;VDB=0.0185 PL 0 MT 364 . A . 283 . DP=540;DP4=370,143,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 365 . A . 283 . DP=552;DP4=379,152,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0112 PL 0 MT 366 . G . 283 . DP=553;DP4=385,146,1,2;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.19,5.9e-09,0.12,1.0;VDB=0.0429 PL 0 MT 367 . A . 283 . DP=560;DP4=386,146,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 368 . A . 283 . DP=566;DP4=388,156,2,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0066,0.32,0.38;VDB=0.0367 PL 0 MT 369 . C . 283 . DP=573;DP4=376,150,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0009 PL 0 MT 370 . C . 283 . DP=578;DP4=390,153,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 371 . C . 283 . DP=587;DP4=395,176,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.068,0.091,1.0;VDB=0.0369 PL 0 MT 372 . T . 283 . DP=597;DP4=415,162,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0063 PL 0 MT 373 . A . 283 . DP=607;DP4=413,169,2,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00013,1.0,1.0;VDB=0.0168 PL 0 MT 374 . A . 283 . DP=612;DP4=414,185,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0165 PL 0 MT 375 . C . 283 . DP=620;DP4=406,186,7,4;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.75,1.0,0.49,1.0;VDB=0.0394 PL 0 MT 376 . A . 283 . DP=631;DP4=423,191,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0302 PL 0 MT 377 . C . 283 . DP=641;DP4=421,192,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.5e-06,1.0,0.4;VDB=0.0342 PL 0 MT 378 . C . 283 . DP=656;DP4=432,204,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.12,0.093,1.0;VDB=0.0144 PL 0 MT 379 . A . 283 . DP=671;DP4=452,207,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0335 PL 0 MT 380 . G . 283 . DP=676;DP4=458,206,0,2;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.097,7.4e-09,0.0067,0.052;VDB=0.0193 PL 0 MT 381 . C . 283 . DP=686;DP4=456,209,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 382 . C . 283 . DP=691;DP4=462,216,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.9e-06,0.091,1.0 PL 0 MT 383 . T . 283 . DP=697;DP4=474,215,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.3e-08,1.0,0.33;VDB=0.0111 PL 0 MT 384 . A . 283 . DP=699;DP4=467,221,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,7.9e-07,1.0,0.032 PL 0 MT 385 . A . 283 . DP=702;DP4=465,221,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.071,1.0,0.23;VDB=0.027 PL 0 MT 386 . C . 283 . DP=707;DP4=464,223,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.022,1.0,0.064;VDB=0.0245 PL 0 MT 387 . C . 283 . DP=713;DP4=468,230,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2e-09,1.0,1.0 PL 0 MT 388 . A . 283 . DP=719;DP4=477,234,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 389 . G . 283 . DP=725;DP4=488,235,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 390 . A . 283 . DP=727;DP4=471,239,2,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.55,8.2e-09,0.34,1.0;VDB=0.0165 PL 0 MT 391 . T . 283 . DP=736;DP4=490,238,2,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,4.7e-07,0.34,1.0;VDB=0.0193 PL 0 MT 392 . T . 283 . DP=744;DP4=488,241,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.4e-09,1.0,1.0 PL 0 MT 393 . T . 283 . DP=746;DP4=486,241,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 394 . C . 283 . DP=750;DP4=496,250,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0202 PL 0 MT 395 . A . 283 . DP=746;DP4=492,247,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 396 . A . 283 . DP=752;DP4=480,252,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 397 . A . 283 . DP=755;DP4=479,258,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.8e-06,0.096,1.0;VDB=0.0215 PL 0 MT 398 . T . 283 . DP=759;DP4=495,253,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 399 . T . 283 . DP=763;DP4=488,256,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,3.9e-07,0.017,0.11 PL 0 MT 400 . T . 283 . DP=764;DP4=485,262,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0138 PL 0 MT 401 . T . 283 . DP=772;DP4=483,271,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 402 . A . 283 . DP=767;DP4=477,275,0,1;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.37,2.2e-06,0.093,1.0;VDB=0.019 PL 0 MT 403 . T . 283 . DP=767;DP4=484,268,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 404 . C . 283 . DP=771;DP4=478,284,0,1;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.37,4e-06,0.092,1.0 PL 0 MT 405 . T . 283 . DP=766;DP4=479,272,1,1;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.2e-21,1.0,0.19;VDB=0.0227 PL 0 MT 406 . T . 283 . DP=770;DP4=470,281,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 407 . T . 283 . DP=764;DP4=459,283,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 408 . T . 283 . DP=762;DP4=454,297,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 409 . G . 283 . DP=768;DP4=466,292,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 410 . G . 283 . DP=766;DP4=447,286,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0261 PL 0 MT 411 . C . 283 . DP=767;DP4=449,292,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 412 . G . 283 . DP=771;DP4=459,287,0,1;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.39,0.0013,1.0,0.029;VDB=0.0185 PL 0 MT 413 . G . 283 . DP=776;DP4=451,285,0,2;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.15,0.0059,0.025,1.0;VDB=0.0394 PL 0 MT 414 . T . 283 . DP=781;DP4=470,297,0,1;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.39,2.6e-05,1.0,0.061;VDB=0.0429 PL 0 MT 415 . A . 283 . DP=787;DP4=462,310,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 416 . T . 283 . DP=788;DP4=473,306,1,1;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,5.1e-12,0.31,1.0;VDB=0.0205 PL 0 MT 417 . G . 283 . DP=782;DP4=471,290,0,1;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.38,3.1e-08,0.079,1.0;VDB=0.0366 PL 0 MT 418 . C . 283 . DP=785;DP4=457,310,1,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,4.5e-08,1.0,0.013;VDB=0.0227 PL 0 MT 419 . A . 283 . DP=785;DP4=462,309,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0447 PL 0 MT 420 . C . 283 . DP=787;DP4=450,313,3,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.27,1.3e-11,0.11,1.0;VDB=0.0268 PL 0 MT 421 . T . 283 . DP=785;DP4=470,296,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 422 . T . 283 . DP=786;DP4=457,302,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 423 . T . 283 . DP=782;DP4=453,298,1,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.3e-08,0.073,1.0;VDB=0.0253 PL 0 MT 424 . T . 283 . DP=780;DP4=453,299,0,2;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.16,1.3e-11,1.0,0.043;VDB=0.021 PL 0 MT 425 . A . 283 . DP=781;DP4=449,296,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 426 . A . 283 . DP=782;DP4=455,310,0,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0067 PL 0 MT 427 . C . 283 . DP=778;DP4=447,311,3,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.27,2.2e-13,0.0044,1.0;VDB=0.0342 PL 0 MT 428 . A . 283 . DP=785;DP4=460,311,2,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.52,0.0039,0.014,1.0;VDB=0.0013 PL 0 MT 429 . G . 283 . DP=782;DP4=468,290,0,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 430 . T . 283 . DP=783;DP4=468,279,0,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0417 PL 0 MT 431 . C . 283 . DP=783;DP4=456,308,3,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.28,2.7e-07,0.25,0.48;VDB=0.0417 PL 0 MT 432 . A . 283 . DP=778;DP4=458,293,0,1;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.39,0.0053,1.0,0.074;VDB=0.0417 PL 0 MT 433 . C . 283 . DP=778;DP4=438,276,2,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.53,6.9e-09,0.011,1.0;VDB=0.0088 PL 0 MT 434 . C . 283 . DP=779;DP4=442,285,3,1;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,8.7e-16,1.0,0.0067;VDB=0.0367 PL 0 MT 435 . C . 283 . DP=775;DP4=447,282,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 436 . C . 283 . DP=773;DP4=436,286,3,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.28,1.7e-10,0.06,0.39;VDB=0.0233 PL 0 MT 437 . C . 283 . DP=773;DP4=444,285,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 438 . C . 283 . DP=772;DP4=449,298,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 439 . A . 283 . DP=773;DP4=448,284,1,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00018,1.0,1.0;VDB=0.0253 PL 0 MT 440 . A . 283 . DP=772;DP4=449,300,0,2;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.16,0.0016,1.0,0.27;VDB=0.0324 PL 0 MT 441 . C . 283 . DP=770;DP4=444,299,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 442 . T . 283 . DP=773;DP4=473,275,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0373 PL 0 MT 443 . A . 283 . DP=772;DP4=458,273,2,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.53,3.5e-09,0.18,0.012;VDB=0.0169 PL 0 MT 444 . A . 283 . DP=758;DP4=451,284,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0417 PL 0 MT 445 . C . 283 . DP=765;DP4=454,287,1,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00013,1.0,1.0;VDB=0.0124 PL 0 MT 446 . A . 283 . DP=763;DP4=465,283,0,1;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.38,1.0,1.0,1.0;VDB=0.0233 PL 0 MT 447 . C . 283 . DP=761;DP4=444,291,1,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.014,0.023,1.0;VDB=0.0121 PL 0 MT 448 . A . 283 . DP=768;DP4=459,293,1,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0033,0.025,1.0;VDB=0.0445 PL 0 MT 449 . T . 283 . DP=765;DP4=467,251,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0183 PL 0 MT 450 . T . 283 . DP=758;DP4=446,248,1,1;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00099,0.031,0.3;VDB=0.0242 PL 0 MT 451 . A . 283 . DP=766;DP4=458,292,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0166 PL 0 MT 452 . T . 283 . DP=761;DP4=467,250,0,1;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.35,6.8e-05,0.02,0.13 PL 0 MT 453 . T . 283 . DP=768;DP4=447,255,0,1;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.36,7e-06,1.0,0.074;VDB=0.0195 PL 0 MT 454 . T . 283 . DP=757;DP4=440,257,0,1;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.37,2.3e-05,1.0,1.0;VDB=0.0227 PL 0 MT 455 . T . 283 . DP=759;DP4=436,201,0,3;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.032,3.9e-07,0.22,0.48;VDB=0.0057 PL 0 MT 456 . C . 283 . DP=765;DP4=435,252,4,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.3,1.5e-10,0.0092,0.05;VDB=0.0018 PL 0 MT 457 . C . 283 . DP=765;DP4=437,252,2,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.54,8.3e-10,1.0,0.0021;VDB=0.0089 PL 0 MT 458 . C . 283 . DP=765;DP4=437,251,2,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.54,6.9e-06,1.0,1.0;VDB=0.0435 PL 0 MT 459 . C . 283 . DP=761;DP4=444,290,1,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00014,0.00041,0.49;VDB=0.0062 PL 0 MT 460 . T . 283 . DP=759;DP4=465,242,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0002 PL 0 MT 461 . C . 283 . DP=761;DP4=452,250,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0069 PL 0 MT 462 . C . 283 . DP=763;DP4=441,252,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 463 . C . 283 . DP=762;DP4=437,283,3,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.28,6.3e-06,0.16,0.39;VDB=0.0363 PL 0 MT 464 . A . 283 . DP=763;DP4=444,262,0,1;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.37,0.08,1.0,1.0;VDB=0.0367 PL 0 MT 465 . C . 283 . DP=762;DP4=453,290,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0215 PL 0 MT 466 . T . 283 . DP=758;DP4=465,244,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0115 PL 0 MT 467 . C . 283 . DP=757;DP4=460,246,0,1;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.35,2.1e-06,1.0,1.0;VDB=0.0343 PL 0 MT 468 . C . 283 . DP=754;DP4=440,251,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0175 PL 0 MT 469 . C . 283 . DP=755;DP4=445,293,1,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00029,0.0029,0.27;VDB=0.0096 PL 0 MT 470 . A . 283 . DP=762;DP4=446,296,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.02 PL 0 MT 471 . T . 283 . DP=759;DP4=463,256,0,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.36,0.001,0.0016,1.0;VDB=0.0232 PL 0 MT 472 . A . 283 . DP=757;DP4=448,287,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0027,0.002,0.16;VDB=0.0447 PL 0 MT 473 . C . 283 . DP=757;DP4=451,293,1,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.3e-07,0.033,1.0;VDB=0.0193 PL 0 MT 474 . T . 283 . DP=763;DP4=468,251,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0134 PL 0 MT 475 . A . 283 . DP=768;DP4=460,285,0,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.38,0.0041,0.0013,1.0;VDB=0.0268 PL 0 MT 476 . C . 283 . DP=768;DP4=462,292,0,2;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.15,1.3e-06,1.1e-05,1.0;VDB=0.02 PL 0 MT 477 . T . 283 . DP=772;DP4=474,257,0,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.35,0.00014,1.0,0.11;VDB=0.0242 PL 0 MT 478 . A . 283 . DP=772;DP4=462,253,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.54,8.5e-10,0.015,0.19;VDB=0.0054 PL 0 MT 479 . A . 283 . DP=773;DP4=458,298,1,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0012,1.0,0.038;VDB=0.0281 PL 0 MT 480 . T . 283 . DP=783;DP4=471,231,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0025 PL 0 MT 481 . C . 283 . DP=784;DP4=458,309,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.048,1.0,0.13;VDB=0.0217 PL 0 MT 482 . T . 283 . DP=783;DP4=460,259,2,2;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.62,0.0001,1.0,1.0;VDB=0.0335 PL 0 MT 483 . C . 283 . DP=791;DP4=460,322,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0077 PL 0 MT 484 . A . 283 . DP=792;DP4=457,324,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0225 PL 0 MT 485 . T . 283 . DP=799;DP4=467,258,0,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.36,0.064,1.0,1.0;VDB=0.0169 PL 0 MT 486 . C . 283 . DP=799;DP4=456,333,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 487 . A . 283 . DP=803;DP4=458,267,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 488 . A . 283 . DP=798;DP4=447,334,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.064,0.00075,1.0;VDB=0.0207 PL 0 MT 489 . T . 283 . DP=803;DP4=468,264,0,3;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.048,4.9e-06,0.042,0.021;VDB=0.0044 PL 0 MT 490 . A . 283 . DP=797;DP4=451,317,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.007,0.00036,0.4;VDB=0.0044 PL 0 MT 491 . C . 283 . DP=791;DP4=448,324,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 492 . A . 283 . DP=797;DP4=456,298,0,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.4,0.00027,0.0004,1.0;VDB=0.0156 PL 0 MT 493 . A . 283 . DP=798;DP4=457,282,0,3;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.056,0.00012,0.064,0.3;VDB=0.0115 PL 0 MT 494 . C . 283 . DP=804;DP4=444,277,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0156 PL 0 MT 495 . C . 283 . DP=814;DP4=460,288,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2e-05,1.0,0.27;VDB=0.0174 PL 0 MT 496 . C . 283 . DP=821;DP4=448,292,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.52,2e-06,1.0,0.11;VDB=0.0372 PL 0 MT 497 . C . 283 . DP=825;DP4=457,296,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.52,0.048,1.0,1.0;VDB=0.0207 PL 0 MT 498 . C . 283 . DP=828;DP4=460,304,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0253 PL 0 MT 499 . G . 283 . DP=831;DP4=469,285,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0037,1.0,0.015;VDB=0.0394 PL 0 MT 500 . C . 283 . DP=843;DP4=477,292,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.019 PL 0 MT 501 . C . 283 . DP=846;DP4=477,302,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 502 . C . 283 . DP=843;DP4=475,338,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0198 PL 0 MT 503 . A . 283 . DP=843;DP4=486,336,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0076 PL 0 MT 504 . T . 283 . DP=844;DP4=501,279,1,3;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.14,4.7e-06,3.5e-06,1.0;VDB=0.0115 PL 0 MT 505 . C . 283 . DP=836;DP4=481,308,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0119 PL 0 MT 506 . C . 283 . DP=835;DP4=479,332,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.5e-05,1.0,0.021;VDB=0.0089 PL 0 MT 507 . T . 283 . DP=841;DP4=498,307,1,3;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.16,1.7e-08,0.16,0.086;VDB=0.0324 PL 0 MT 508 . A . 283 . DP=847;DP4=483,322,2,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,8.7e-05,0.082,1.0;VDB=0.044 PL 0 MT 509 . C . 283 . DP=854;DP4=471,319,4,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.15,1.2e-09,0.0011,0.28;VDB=0.0394 PL 0 MT 510 . C . 283 . DP=853;DP4=463,322,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.4e-06,1.0,0.045;VDB=0.018 PL 0 MT 511 . C . 283 . DP=855;DP4=470,358,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.7e-05,0.0014,0.053;VDB=0.0146 PL 0 MT 512 . A . 283 . DP=857;DP4=488,355,0,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.42,0.00018,0.0016,1.0;VDB=0.0166 PL 0 MT 513 . G . 283 . DP=857;DP4=496,312,3,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.29,2.2e-11,0.00027,1.0;VDB=0.0417 PL 0 MT 514 . C . 283 . DP=851;DP4=471,346,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.18,0.011,1.0 PL 0 MT 515 . A . 283 . DP=843;DP4=479,344,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0019,1.0,0.017;VDB=0.0445 PL 0 MT 516 . C . 283 . DP=839;DP4=472,342,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 517 . A . 283 . DP=850;DP4=475,350,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0367 PL 0 MT 518 . C . 283 . DP=841;DP4=457,349,0,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.43,0.00018,1.0,0.063;VDB=0.0155 PL 0 MT 519 . A . 283 . DP=839;DP4=470,343,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0394 PL 0 MT 520 . C . 283 . DP=833;DP4=457,341,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.51,1e-06,0.02,0.46;VDB=0.0145 PL 0 MT 521 . A . 283 . DP=831;DP4=463,335,1,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0021,1.0,0.0088;VDB=0.0394 PL 0 MT 522 . C . 283 . DP=835;DP4=462,345,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0118 PL 0 MT 523 . A . 283 . DP=833;DP4=463,329,0,4;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.03,5.1e-08,0.11,0.026;VDB=0.0335 PL 0 MT 524 . C . 283 . DP=828;DP4=454,324,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 525 . C . 283 . DP=828;DP4=448,333,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0101 PL 0 MT 526 . G . 283 . DP=829;DP4=449,327,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0206 PL 0 MT 527 . C . 283 . DP=832;DP4=458,353,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.51,4.6e-09,0.089,0.31;VDB=0.0074 PL 0 MT 528 . T . 283 . DP=828;DP4=470,345,0,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.42,0.017,1.0,1.0;VDB=0.0417 PL 0 MT 529 . G . 283 . DP=819;DP4=465,322,0,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.41,9.5e-07,0.00067,1.0;VDB=0.0074 PL 0 MT 530 . C . 283 . DP=822;DP4=451,348,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0074 PL 0 MT 531 . T . 283 . DP=828;DP4=471,331,1,2;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.57,2e-10,0.065,1.0;VDB=0.0093 PL 0 MT 532 . A . 283 . DP=830;DP4=433,335,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.51,5e-06,1.0,0.15;VDB=0.02 PL 0 MT 533 . A . 283 . DP=825;DP4=431,343,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.51,5.8e-06,0.017,1.0;VDB=0.0374 PL 0 MT 534 . C . 283 . DP=828;DP4=452,322,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 535 . C . 283 . DP=827;DP4=441,333,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00017,1.1e-06,1.0;VDB=0.0253 PL 0 MT 536 . C . 283 . DP=830;DP4=446,328,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.004 PL 0 MT 537 . C . 283 . DP=830;DP4=436,361,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0212 PL 0 MT 538 . A . 283 . DP=830;DP4=461,358,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0245 PL 0 MT 539 . T . 283 . DP=832;DP4=474,330,1,2;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.57,8.2e-07,1.5e-05,1.0;VDB=0.0445 PL 0 MT 540 . A . 283 . DP=834;DP4=456,327,3,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.27,2.4e-05,1.0,0.078;VDB=0.0445 PL 0 MT 541 . C . 283 . DP=828;DP4=442,326,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.51,0.00044,0.01,0.18;VDB=0.0435 PL 0 MT 542 . C . 283 . DP=832;DP4=437,327,4,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.4,1.7e-12,8e-07,1.0;VDB=0.0447 PL 0 MT 543 . C . 283 . DP=829;DP4=448,323,3,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.27,5.3e-09,1.0,0.3;VDB=0.0429 PL 0 MT 544 . C . 283 . DP=833;DP4=459,326,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.27,4e-07,1.0;VDB=0.0153 PL 0 MT 545 . G . 283 . DP=831;DP4=453,338,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0373 PL 0 MT 546 . A . 283 . DP=831;DP4=460,323,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0354 PL 0 MT 547 . A . 283 . DP=826;DP4=461,331,0,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.42,2.8e-05,0.00042,0.027;VDB=0.0268 PL 0 MT 548 . C . 283 . DP=827;DP4=460,317,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 549 . C . 283 . DP=839;DP4=461,350,3,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.26,2e-08,1.0,0.01;VDB=0.0051 PL 0 MT 550 . A . 283 . DP=840;DP4=469,331,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0417 PL 0 MT 551 . A . 283 . DP=837;DP4=468,342,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.017,1.0,1.0;VDB=0.0367 PL 0 MT 552 . C . 283 . DP=834;DP4=457,322,2,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.51,3.6e-05,1.0,0.34;VDB=0.0183 PL 0 MT 553 . C . 283 . DP=838;DP4=459,345,4,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.14,2.1e-13,0.00082,1.0;VDB=0.0367 PL 0 MT 554 . A . 283 . DP=842;DP4=482,321,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00051,0.17,0.24;VDB=0.0123 PL 0 MT 555 . A . 283 . DP=842;DP4=478,326,0,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.41,3.8e-08,0.00018,1.0;VDB=0.0165 PL 0 MT 556 . A . 283 . DP=843;DP4=473,331,0,2;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.17,5.5e-08,1.0,0.31;VDB=0.0429 PL 0 MT 557 . C . 283 . DP=843;DP4=463,321,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,3.7e-05,1.0,1.0;VDB=0.0435 PL 0 MT 558 . C . 283 . DP=839;DP4=462,321,2,1;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.4e-12,5.7e-15,1.0;VDB=0.0447 PL 0 MT 559 . C . 283 . DP=827;DP4=454,315,4,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.15,6.5e-16,0.007,0.31;VDB=0.0073 PL 0 MT 560 . C . 283 . DP=816;DP4=450,334,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.9e-05,9.4e-08,1.0 PL 0 MT 561 . A . 283 . DP=821;DP4=470,317,0,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.4,0.049,1.0,1.0;VDB=0.0074 PL 0 MT 562 . A . 283 . DP=827;DP4=457,322,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0002 PL 0 MT 563 . A . 283 . DP=834;DP4=457,340,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 564 . G . 283 . DP=828;DP4=478,331,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.011,1.0,1.0;VDB=0.0025 PL 0 MT 565 . A . 283 . DP=824;DP4=452,331,2,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.51,0.00016,0.0075,0.14;VDB=0.0429 PL 0 MT 566 . C . 283 . DP=827;DP4=451,332,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00033,2.7e-05,1.0;VDB=0.0123 PL 0 MT 567 . A . 283 . DP=827;DP4=472,315,0,1;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.4,0.29,1.0,1.0;VDB=0.0367 PL 0 MT 568 . C . 283 . DP=827;DP4=449,310,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0116 PL 0 MT 569 . C . 283 . DP=826;DP4=444,307,6,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.086,3.2e-15,2.2e-08,1.0;VDB=0.0141 PL 0 MT 570 . C . 283 . DP=819;DP4=436,301,2,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.52,0.0003,1.0,1.0;VDB=0.0241 PL 0 MT 571 . C . 283 . DP=822;DP4=459,302,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0025 PL 0 MT 572 . C . 283 . DP=822;DP4=459,305,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 573 . C . 283 . DP=823;DP4=466,317,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0133 PL 0 MT 574 . A . 283 . DP=826;DP4=488,315,1,2;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.56,4.9e-06,0.019,1.0;VDB=0.044 PL 0 MT 575 . C . 283 . DP=827;DP4=479,314,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0128 PL 0 MT 576 . A . 283 . DP=831;DP4=495,313,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0028,1.6e-05,0.36;VDB=0.0169 PL 0 MT 577 . G . 283 . DP=830;DP4=516,300,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0195 PL 0 MT 578 . T . 283 . DP=837;DP4=519,299,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0302 PL 0 MT 579 . T . 283 . DP=833;DP4=495,295,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 580 . T . 283 . DP=839;DP4=497,302,1,1;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,4.3e-06,0.00033,0.061;VDB=0.0042 PL 0 MT 581 . A . 283 . DP=848;DP4=509,313,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,8e-05,1.0,0.29;VDB=0.0088 PL 0 MT 582 . T . 283 . DP=848;DP4=531,308,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,8e-07,1.0,0.33;VDB=0.0184 PL 0 MT 583 . G . 283 . DP=842;DP4=524,304,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.5e-07,2.9e-06,0.24 PL 0 MT 584 . T . 283 . DP=848;DP4=530,310,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 585 . A . 283 . DP=844;DP4=499,317,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.021 PL 0 MT 586 . G . 283 . DP=835;DP4=516,304,0,1;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.37,4.9e-06,1.0,0.035;VDB=0.044 PL 0 MT 587 . C . 283 . DP=847;DP4=503,324,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 588 . T . 283 . DP=847;DP4=521,309,0,1;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.37,2.3e-05,2.5e-12,1.0;VDB=0.0051 PL 0 MT 589 . T . 283 . DP=846;DP4=502,310,0,2;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.15,2.1e-14,0.0001,0.29;VDB=0.0227 PL 0 MT 590 . A . 283 . DP=843;DP4=504,320,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.02 PL 0 MT 591 . C . 283 . DP=847;DP4=497,316,2,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.52,1.3e-11,0.00017,0.43;VDB=0.0263 PL 0 MT 592 . C . 283 . DP=853;DP4=492,335,3,1;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.65,1.8e-12,1.2e-33,1.0;VDB=0.0169 PL 0 MT 593 . T . 283 . DP=853;DP4=511,317,3,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.29,6e-10,0.005,0.47;VDB=0.0073 PL 0 MT 594 . C . 283 . DP=853;DP4=507,323,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0017,1.0,1.0;VDB=0.0121 PL 0 MT 595 . C . 283 . DP=855;DP4=495,333,1,1;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,6.9e-14,0.00031,0.29;VDB=0.0215 PL 0 MT 596 . T . 283 . DP=859;DP4=513,329,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0032 PL 0 MT 597 . C . 283 . DP=861;DP4=509,338,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0195 PL 0 MT 598 . A . 283 . DP=853;DP4=513,318,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 599 . A . 283 . DP=845;DP4=507,310,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.7e-06,1.0,0.021;VDB=0.0 PL 0 MT 600 . A . 283 . DP=847;DP4=509,316,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.023,1.0,0.036;VDB=0.0101 PL 0 MT 601 . G . 283 . DP=846;DP4=525,302,0,1;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.37,1.6e-07,1.1e-06,1.0;VDB=0.0242 PL 0 MT 602 . C . 283 . DP=847;DP4=508,317,3,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.29,7.8e-13,0.0041,0.07;VDB=0.0013 PL 0 MT 603 . A . 283 . DP=861;DP4=534,303,2,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.54,7.4e-14,0.00014,0.5;VDB=0.0215 PL 0 MT 604 . A . 283 . DP=866;DP4=528,319,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,7.1e-07,1.0,0.036;VDB=0.0205 PL 0 MT 605 . T . 283 . DP=873;DP4=547,316,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0099 PL 0 MT 606 . A . 283 . DP=884;DP4=540,326,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.18,1.0,1.0;VDB=0.0356 PL 0 MT 607 . C . 283 . DP=880;DP4=540,323,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0086 PL 0 MT 608 . A . 283 . DP=883;DP4=542,324,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,3.8e-06,1.0,1.0;VDB=0.0374 PL 0 MT 609 . C . 283 . DP=890;DP4=548,326,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0163 PL 0 MT 610 . T . 283 . DP=900;DP4=572,322,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0242 PL 0 MT 611 . G . 283 . DP=905;DP4=577,314,0,1;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.35,0.04,1.0,1.0;VDB=0.0394 PL 0 MT 612 . A . 283 . DP=904;DP4=568,314,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0049,1.0,0.18 PL 0 MT 613 . A . 283 . DP=913;DP4=571,316,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00039,1.0,0.49;VDB=0.0064 PL 0 MT 614 . A . 283 . DP=918;DP4=571,314,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0029,1.0,1.0;VDB=0.018 PL 0 MT 615 . A . 283 . DP=924;DP4=570,328,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0144 PL 0 MT 616 . T . 283 . DP=926;DP4=593,318,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0324 PL 0 MT 617 . G . 283 . DP=926;DP4=592,325,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 618 . T . 283 . DP=932;DP4=591,320,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.044 PL 0 MT 619 . T . 283 . DP=936;DP4=586,317,0,2;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.12,9.1e-09,0.06,1.0;VDB=0.0207 PL 0 MT 620 . T . 283 . DP=933;DP4=581,315,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.4e-06,1.0,0.057;VDB=0.0245 PL 0 MT 621 . A . 283 . DP=930;DP4=585,327,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 622 . G . 283 . DP=925;DP4=600,317,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 623 . A . 283 . DP=925;DP4=584,317,1,1;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,6.9e-13,0.017,0.03;VDB=0.0414 PL 0 MT 624 . C . 283 . DP=928;DP4=584,303,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0116 PL 0 MT 625 . G . 283 . DP=930;DP4=593,301,2,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.55,0.0069,1.0,0.24;VDB=0.0143 PL 0 MT 626 . G . 283 . DP=920;DP4=583,289,1,2;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.26,3e-08,0.011,0.15;VDB=0.0435 PL 0 MT 627 . G . 283 . DP=922;DP4=583,290,0,1;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.33,1.1e-06,1.0,1.0;VDB=0.0429 PL 0 MT 628 . C . 283 . DP=921;DP4=584,303,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0111 PL 0 MT 629 . T . 283 . DP=926;DP4=613,293,2,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,6.5e-08,1.0,0.1;VDB=0.009 PL 0 MT 630 . C . 283 . DP=927;DP4=604,308,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0363 PL 0 MT 631 . A . 283 . DP=925;DP4=609,306,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0343 PL 0 MT 632 . C . 283 . DP=923;DP4=595,309,3,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.55,5.8e-20,0.15,1.0;VDB=0.0335 PL 0 MT 633 . A . 283 . DP=926;DP4=606,312,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 634 . T . 283 . DP=926;DP4=614,282,0,1;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.32,0.0078,1.0,1.0;VDB=0.0125 PL 0 MT 635 . C . 283 . DP=925;DP4=597,304,6,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.19,2.3e-19,0.00018,0.23;VDB=0.0447 PL 0 MT 636 . A . 283 . DP=926;DP4=607,302,1,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0009,0.048,1.0;VDB=0.0435 PL 0 MT 637 . C . 283 . DP=933;DP4=589,289,1,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0029,1.0,1.0;VDB=0.0207 PL 0 MT 638 . C . 283 . DP=935;DP4=597,290,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 639 . C . 283 . DP=928;DP4=594,289,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 640 . C . 283 . DP=932;DP4=591,309,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0077 PL 0 MT 641 . A . 283 . DP=935;DP4=603,314,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 642 . T . 283 . DP=935;DP4=620,289,0,3;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.033,4.4e-10,0.44,1.0;VDB=0.0268 PL 0 MT 643 . A . 283 . DP=931;DP4=599,299,2,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.1e-09,0.29,0.0039;VDB=0.0173 PL 0 MT 644 . A . 283 . DP=927;DP4=593,298,0,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0192 PL 0 MT 645 . A . 283 . DP=928;DP4=593,318,1,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.5e-05,0.094,1.0;VDB=0.0335 PL 0 MT 646 . C . 283 . DP=927;DP4=591,319,1,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.1e-06,1.0,0.054;VDB=0.0237 PL 0 MT 647 . A . 283 . DP=932;DP4=602,303,0,1;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.34,1.5e-08,0.02,0.02 PL 0 MT 648 . A . 283 . DP=931;DP4=591,304,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 649 . A . 283 . DP=937;DP4=596,317,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 650 . T . 283 . DP=948;DP4=625,303,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0299 PL 0 MT 651 . A . 283 . DP=940;DP4=604,317,3,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.56,4.4e-09,1.0,1.0;VDB=0.0215 PL 0 MT 652 . G . 283 . DP=931;DP4=610,301,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 653 . G . 283 . DP=929;DP4=592,300,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0145 PL 0 MT 654 . T . 283 . DP=935;DP4=609,309,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.039,0.079,0.099;VDB=0.0445 PL 0 MT 655 . T . 283 . DP=940;DP4=601,309,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00025,1.0,0.33;VDB=0.0215 PL 0 MT 656 . T . 283 . DP=938;DP4=594,314,0,0;MQ=50;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0227 PL 0 MT 657 . G . 283 . DP=938;DP4=613,300,0,5;MQ=50;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.004,1.5e-13,0.083,0.12;VDB=0.0414 PL 0 MT 658 . G . 283 . DP=938;DP4=592,300,1,2;MQ=50;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.26,2.3e-11,1.0,1.0;VDB=0.0414 PL 0 MT 659 . T . 283 . DP=934;DP4=608,290,1,4;MQ=50;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.041,6.2e-12,1.0,0.46;VDB=0.0445 PL 0 MT 660 . C . 283 . DP=931;DP4=594,302,2,1;MQ=50;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.2e-19,0.056,0.13;VDB=0.0302 PL 0 MT 661 . C . 283 . DP=928;DP4=586,312,0,0;MQ=49;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0156 PL 0 MT 662 . T . 283 . DP=925;DP4=614,298,0,1;MQ=49;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.33,7.3e-06,1.0,0.33;VDB=0.0233 PL 0 MT 663 . A . 283 . DP=922;DP4=592,311,0,1;MQ=49;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.35,1e-07,0.17,0.016;VDB=0.02 PL 0 MT 664 . G . 283 . DP=915;DP4=600,298,1,0;MQ=49;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.054,0.0044,1.0;VDB=0.0248 PL 0 MT 665 . C . 283 . DP=911;DP4=567,292,4,0;MQ=49;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.31,8.9e-10,1.0,1.0;VDB=0.0367 PL 0 MT 666 . C . 283 . DP=906;DP4=576,308,2,0;MQ=48;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.55,5.6e-11,0.48,0.28;VDB=0.0238 PL 0 MT 667 . T . 283 . DP=908;DP4=595,299,0,0;MQ=48;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 668 . T . 283 . DP=906;DP4=582,298,0,0;MQ=48;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 669 . T . 283 . DP=905;DP4=574,303,2,0;MQ=48;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.55,2.6e-10,0.26,0.22;VDB=0.0252 PL 0 MT 670 . C . 283 . DP=901;DP4=582,310,0,0;MQ=47;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 671 . T . 283 . DP=900;DP4=590,304,0,0;MQ=47;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 672 . A . 283 . DP=899;DP4=573,307,0,0;MQ=47;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 673 . T . 283 . DP=902;DP4=591,301,1,0;MQ=47;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,8.7e-08,0.05,1.0;VDB=0.02 PL 0 MT 674 . T . 283 . DP=898;DP4=576,300,1,0;MQ=47;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,9.9e-12,1.0,0.03 PL 0 MT 675 . A . 283 . DP=893;DP4=576,301,2,0;MQ=46;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.55,7.1e-10,0.36,1.0;VDB=0.01 PL 0 MT 676 . G . 283 . DP=888;DP4=586,290,2,0;MQ=46;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,4.6e-14,1.0,0.34;VDB=0.0135 PL 0 MT 677 . C . 283 . DP=879;DP4=562,290,2,0;MQ=46;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.55,0.0012,1.0,0.11;VDB=0.0202 PL 0 MT 678 . T . 283 . DP=875;DP4=585,279,0,0;MQ=46;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0367 PL 0 MT 679 . C . 283 . DP=872;DP4=571,284,1,1;MQ=46;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.55,9.3e-10,0.38,0.06;VDB=0.0175 PL 0 MT 680 . T . 283 . DP=874;DP4=583,283,0,0;MQ=45;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 681 . T . 283 . DP=870;DP4=569,275,0,0;MQ=45;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 682 . A . 283 . DP=860;DP4=568,276,2,0;MQ=45;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1e-11,0.15,1.0;VDB=0.0252 PL 0 MT 683 . G . 283 . DP=858;DP4=584,270,0,0;MQ=45;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 684 . T . 283 . DP=855;DP4=584,262,0,0;MQ=45;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 685 . A . 283 . DP=853;DP4=571,262,1,0;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,5.3e-08,1.0,0.23 PL 0 MT 686 . A . 283 . DP=848;DP4=571,262,0,0;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 687 . G . 283 . DP=847;DP4=585,257,0,0;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 688 . A . 283 . DP=845;DP4=569,262,1,0;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,6.5e-07,0.15,1.0;VDB=0.0253 PL 0 MT 689 . T . 283 . DP=845;DP4=580,257,0,0;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.025 PL 0 MT 690 . T . 283 . DP=852;DP4=569,264,0,1;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.32,8.9e-09,0.26,1.0 PL 0 MT 691 . A . 283 . DP=846;DP4=568,263,1,0;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.6e-05,0.085,0.031;VDB=0.0078 PL 0 MT 692 . C . 283 . DP=843;DP4=554,266,0,0;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 693 . A . 283 . DP=835;DP4=566,262,0,2;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.1,2.1e-10,0.086,0.023;VDB=0.0168 PL 0 MT 694 . C . 283 . DP=833;DP4=556,263,1,0;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.8e-08,0.073,0.12;VDB=0.0 PL 0 MT 695 . A . 283 . DP=838;DP4=569,262,0,0;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0207 PL 0 MT 696 . T . 283 . DP=837;DP4=577,253,0,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 697 . G . 283 . DP=836;DP4=575,249,1,2;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.22,3.7e-16,1.0,1.0;VDB=0.0245 PL 0 MT 698 . C . 283 . DP=836;DP4=559,256,1,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.0,0.18,1.0;VDB=0.0106 PL 0 MT 699 . A . 283 . DP=833;DP4=571,253,0,0;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 700 . A . 283 . DP=830;DP4=558,258,0,0;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 701 . G . 283 . DP=826;DP4=565,248,0,0;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0062 PL 0 MT 702 . C . 283 . DP=834;DP4=554,266,0,0;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.019 PL 0 MT 703 . A . 283 . DP=828;DP4=563,260,0,1;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.32,2.7e-05,1.0,1.0 PL 0 MT 704 . T . 283 . DP=828;DP4=567,239,0,1;MQ=39;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.3,0.054,0.098,1.0;VDB=0.033 PL 0 MT 705 . C . 283 . DP=825;DP4=558,247,0,0;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0394 PL 0 MT 706 . C . 283 . DP=827;DP4=551,253,3,0;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.56,2.9e-10,0.045,1.0;VDB=0.0268 PL 0 MT 707 . C . 283 . DP=825;DP4=556,248,0,0;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0123 PL 0 MT 708 . C . 283 . DP=820;DP4=553,250,1,1;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.53,3.1e-06,1.0,0.16;VDB=0.0193 PL 0 MT 709 . G . 283 . DP=833;DP4=566,256,0,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 710 . T . 283 . DP=834;DP4=567,260,0,0;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0193 PL 0 MT 711 . T . 283 . DP=833;DP4=557,256,0,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 712 . C . 283 . DP=838;DP4=566,256,0,0;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 713 . C . 283 . DP=839;DP4=559,268,1,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,7.3e-06,0.48,1.0;VDB=0.0158 PL 0 MT 714 . A . 283 . DP=861;DP4=560,296,0,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0188 PL 0 MT 715 . G . 283 . DP=856;DP4=560,279,0,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 716 . T . 283 . DP=856;DP4=557,290,1,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.019,0.47,1.0;VDB=0.0073 PL 0 MT 717 . G . 283 . DP=853;DP4=554,288,1,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.1e-06,0.15,0.12;VDB=0.0111 PL 0 MT 718 . A . 283 . DP=854;DP4=546,300,0,1;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.36,0.028,1.0,1.0 PL 0 MT 719 . G . 283 . DP=851;DP4=547,279,0,2;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.11,0.00011,1.0,0.1;VDB=0.0435 PL 0 MT 720 . T . 283 . DP=859;DP4=545,281,2,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.55,0.001,0.21,0.32;VDB=0.035 PL 0 MT 721 . T . 283 . DP=860;DP4=543,276,1,1;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,4.4e-10,0.18,1.0;VDB=0.0057 PL 0 MT 722 . C . 283 . DP=862;DP4=540,307,1,0;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.2e-05,0.14,0.46 PL 0 MT 723 . A . 283 . DP=857;DP4=545,297,1,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.14,0.25,0.036;VDB=0.0394 PL 0 MT 724 . C . 283 . DP=862;DP4=535,283,1,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0038,0.45,1.0;VDB=0.0094 PL 0 MT 725 . C . 283 . DP=864;DP4=532,286,1,2;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.28,4.9e-14,0.34,1.0;VDB=0.0417 PL 0 MT 726 . C . 283 . DP=861;DP4=537,308,0,1;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.37,2.3e-06,1.0,0.14;VDB=0.0042 PL 0 MT 727 . T . 283 . DP=861;DP4=548,290,0,0;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0325 PL 0 MT 728 . C . 283 . DP=860;DP4=541,312,0,0;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 729 . T . 283 . DP=863;DP4=547,283,0,1;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.34,7.1e-05,0.24,0.39;VDB=0.0025 PL 0 MT 730 . A . 283 . DP=865;DP4=543,282,0,0;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 731 . A . 283 . DP=867;DP4=542,280,0,0;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 732 . A . 283 . DP=868;DP4=542,317,1,0;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0024,0.22,0.44;VDB=0.0049 PL 0 MT 733 . T . 283 . DP=872;DP4=546,269,1,2;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.26,8.1e-05,0.31,0.14;VDB=0.0268 PL 0 MT 734 . C . 283 . DP=874;DP4=540,316,0,0;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.022 PL 0 MT 735 . A . 283 . DP=876;DP4=545,313,0,0;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0073 PL 0 MT 736 . C . 283 . DP=877;DP4=537,280,1,1;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,9.7e-05,0.096,1.0;VDB=0.0215 PL 0 MT 737 . C . 283 . DP=874;DP4=522,330,0,0;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 738 . A . 283 . DP=875;DP4=533,331,0,0;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0057 PL 0 MT 739 . C . 283 . DP=880;DP4=533,293,0,1;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.36,0.00013,0.043,1.0;VDB=0.0225 PL 0 MT 740 . G . 283 . DP=879;DP4=529,324,0,2;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.15,0.00048,0.21,1.0;VDB=0.0074 PL 0 MT 741 . A . 283 . DP=886;DP4=531,345,0,0;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.021 PL 0 MT 742 . T . 283 . DP=888;DP4=539,306,0,3;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.048,1.5e-08,1.0,1.0;VDB=0.0006 PL 0 MT 743 . C . 283 . DP=887;DP4=533,344,1,1;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,4.4e-08,1.0,0.048;VDB=0.035 PL 0 MT 744 . A . 283 . DP=888;DP4=538,316,0,0;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 745 . A . 283 . DP=891;DP4=532,320,0,0;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 746 . A . 283 . DP=887;DP4=528,317,1,0;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,6.3e-06,0.17,0.46;VDB=0.0123 PL 0 MT 747 . A . 283 . DP=884;DP4=524,347,0,0;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 748 . G . 283 . DP=883;DP4=520,311,1,0;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,8.1e-05,0.035,1.0;VDB=0.0302 PL 0 MT 749 . G . 283 . DP=888;DP4=503,316,0,1;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.39,0.027,0.035,1.0;VDB=0.044 PL 0 MT 750 . A G 222 . DP=890;DP4=0,3,483,315;MQ=45;FQ=-282.0;AF1=1.0;AC1=2.0;PV4=0.062,1.0,0.18,1.0;VDB=0.0435 GT:PL:GQ 1/1:255,255,0:99 ok testWrite (vcf.test.test_vcf.TestWriterDictionaryMeta) ... ok test_samples (vcf.test.test_vcf.TestSamplesSpace) ... ok test_metadata_whitespace (vcf.test.test_vcf.TestMetadataWhitespace) ... ok test_mixed_filtering (vcf.test.test_vcf.TestMixedFiltering) ... /usr/lib/python3.6/unittest/case.py:605: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<>/.pybuild/pythonX.Y_3.6/build/vcf/test/mixed-filtering.vcf' mode='rt' encoding='UTF-8'> testMethod() ok test_aaf (vcf.test.test_vcf.TestRecord) ... /<>/.pybuild/pythonX.Y_3.6/build/vcf/test/test_vcf.py:598: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<>/.pybuild/pythonX.Y_3.6/build/vcf/test/example-4.0.vcf' mode='rt' encoding='UTF-8'> reader = vcf.Reader(fh('example-4.1-ploidy.vcf')) /usr/lib/python3.6/unittest/case.py:605: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<>/.pybuild/pythonX.Y_3.6/build/vcf/test/example-4.1-ploidy.vcf' mode='rt' encoding='UTF-8'> testMethod() ok test_call_rate (vcf.test.test_vcf.TestRecord) ... ok test_coordinates_for_None_alt (vcf.test.test_vcf.TestRecord) ... ok test_coordinates_for_breakend (vcf.test.test_vcf.TestRecord) ... ok test_coordinates_for_deletion (vcf.test.test_vcf.TestRecord) ... ok test_coordinates_for_insert_and_snp (vcf.test.test_vcf.TestRecord) ... ok test_coordinates_for_insertion (vcf.test.test_vcf.TestRecord) ... ok test_coordinates_for_insertion_and_deletion (vcf.test.test_vcf.TestRecord) ... ok test_coordinates_for_multiple_snps (vcf.test.test_vcf.TestRecord) ... ok test_coordinates_for_snp (vcf.test.test_vcf.TestRecord) ... ok test_coordinates_for_snp_and_deletion (vcf.test.test_vcf.TestRecord) ... ok test_dunder_eq (vcf.test.test_vcf.TestRecord) ... /<>/.pybuild/pythonX.Y_3.6/build/vcf/test/test_vcf.py:565: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<>/.pybuild/pythonX.Y_3.6/build/vcf/test/example-4.0.vcf' mode='rt' encoding='UTF-8'> rec = next(vcf.Reader(fh('example-4.0.vcf'))) ok test_heterozygosity (vcf.test.test_vcf.TestRecord) ... ok test_info_multiple_values (vcf.test.test_vcf.TestRecord) ... /usr/lib/python3.6/unittest/case.py:605: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<>/.pybuild/pythonX.Y_3.6/build/vcf/test/example-4.1-info-multiple-values.vcf' mode='rt' encoding='UTF-8'> testMethod() ok test_is_deletion (vcf.test.test_vcf.TestRecord) ... ok test_is_indel (vcf.test.test_vcf.TestRecord) ... ok test_is_snp (vcf.test.test_vcf.TestRecord) ... ok test_is_snp_for_n_alt (vcf.test.test_vcf.TestRecord) ... ok test_is_sv (vcf.test.test_vcf.TestRecord) ... /<>/.pybuild/pythonX.Y_3.6/build/vcf/test/test_vcf.py:799: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<>/.pybuild/pythonX.Y_3.6/build/vcf/test/example-4.1-sv.vcf' mode='rt' encoding='UTF-8'> reader = vcf.Reader(fh('example-4.0.vcf')) ok test_is_sv_precise (vcf.test.test_vcf.TestRecord) ... /<>/.pybuild/pythonX.Y_3.6/build/vcf/test/test_vcf.py:830: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<>/.pybuild/pythonX.Y_3.6/build/vcf/test/example-4.1-sv.vcf' mode='rt' encoding='UTF-8'> reader = vcf.Reader(fh('example-4.0.vcf')) ok test_is_transition (vcf.test.test_vcf.TestRecord) ... ok test_num_calls (vcf.test.test_vcf.TestRecord) ... ok test_pi (vcf.test.test_vcf.TestRecord) ... ok test_pickle (vcf.test.test_vcf.TestRecord) ... ok test_qual (vcf.test.test_vcf.TestRecord) ... ok test_sv_end (vcf.test.test_vcf.TestRecord) ... /<>/.pybuild/pythonX.Y_3.6/build/vcf/test/test_vcf.py:861: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<>/.pybuild/pythonX.Y_3.6/build/vcf/test/example-4.1-sv.vcf' mode='rt' encoding='UTF-8'> reader = vcf.Reader(fh('example-4.0.vcf')) ok test_var_subtype (vcf.test.test_vcf.TestRecord) ... /<>/.pybuild/pythonX.Y_3.6/build/vcf/test/test_vcf.py:766: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<>/.pybuild/pythonX.Y_3.6/build/vcf/test/example-4.0.vcf' mode='rt' encoding='UTF-8'> reader = vcf.Reader(fh('example-4.1-sv.vcf')) ok test_var_type (vcf.test.test_vcf.TestRecord) ... /<>/.pybuild/pythonX.Y_3.6/build/vcf/test/test_vcf.py:734: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<>/.pybuild/pythonX.Y_3.6/build/vcf/test/example-4.0.vcf' mode='rt' encoding='UTF-8'> reader = vcf.Reader(fh('example-4.1-sv.vcf')) ok test_dunder_eq (vcf.test.test_vcf.TestCall) ... ok test_gt_bases (vcf.test.test_vcf.TestCall) ... ok test_gt_types (vcf.test.test_vcf.TestCall) ... ok test_phased (vcf.test.test_vcf.TestCall) ... ok testFetchRange (vcf.test.test_vcf.TestFetch) ... skipped 'test requires installation of PySAM.' testFetchesAllFromChromIfOnlyChromSpecified (vcf.test.test_vcf.TestFetch) ... skipped 'test requires installation of PySAM.' testFetchesFromStartIfStartOnlySpecified (vcf.test.test_vcf.TestFetch) ... skipped 'test requires installation of PySAM.' testNoVariantsForZeroLengthInterval (vcf.test.test_vcf.TestFetch) ... skipped 'test requires installation of PySAM.' testNoVariantsInRange (vcf.test.test_vcf.TestFetch) ... skipped 'test requires installation of PySAM.' testFetch (vcf.test.test_vcf.TestIssue201) ... skipped 'test requires installation of PySAM.' testIterate (vcf.test.test_vcf.TestIssue201) ... skipped 'test requires installation of PySAM.' testOpenFilehandle (vcf.test.test_vcf.TestOpenMethods) ... ok testOpenFilehandleGzipped (vcf.test.test_vcf.TestOpenMethods) ... /usr/lib/python3.6/unittest/case.py:605: ResourceWarning: unclosed file <_io.BufferedReader name='/<>/.pybuild/pythonX.Y_3.6/build/vcf/test/tb.vcf.gz'> testMethod() ok testOpenFilename (vcf.test.test_vcf.TestOpenMethods) ... ok testOpenFilenameGzipped (vcf.test.test_vcf.TestOpenMethods) ... ok testCLIListSamples (vcf.test.test_vcf.TestSampleFilter) ... skipped 'test broken for Python 3' testCLIWithFilter (vcf.test.test_vcf.TestSampleFilter) ... skipped 'test broken for Python 3' testSampleFilterModule (vcf.test.test_vcf.TestSampleFilter) ... /<>/.pybuild/pythonX.Y_3.6/build/vcf/test/test_vcf.py:1340: ResourceWarning: unclosed file <_io.TextIOWrapper name='vcf/test/example-4.1.vcf' mode='rt' encoding='UTF-8'> del filt ok testApplyFilter (vcf.test.test_vcf.TestFilter) ... skipped 'test currently broken' testApplyMultipleFilters (vcf.test.test_vcf.TestFilter) ... skipped 'test currently broken' test_issue_16 (vcf.test.test_vcf.TestRegression) ... /usr/lib/python3.6/unittest/case.py:605: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<>/.pybuild/pythonX.Y_3.6/build/vcf/test/issue-16.vcf' mode='rt' encoding='UTF-8'> testMethod() ok test_null_mono (vcf.test.test_vcf.TestRegression) ... Record(CHROM=20, POS=14370, REF=G, ALT=[A]) Call(sample=NA00001, CallData(GT=0|0, GQ=48, DP=1, HQ=[51, 51])) Call(sample=NA00002, CallData(GT=1|0, GQ=48, DP=8, HQ=[51, 51])) Call(sample=NA00003, CallData(GT=1/1, GQ=43, DP=5, HQ=[None, None])) Record(CHROM=20, POS=17330, REF=T, ALT=[A]) Call(sample=NA00001, CallData(GT=0|0, GQ=49, DP=3, HQ=[58, 50])) Call(sample=NA00002, CallData(GT=0|1, GQ=3, DP=5, HQ=[65, 3])) Call(sample=NA00003, CallData(GT=0/0, GQ=41, DP=3, HQ=None)) Record(CHROM=20, POS=1110696, REF=A, ALT=[G, T]) Call(sample=NA00001, CallData(GT=1|2, GQ=21, DP=6, HQ=[23, 27])) Call(sample=NA00002, CallData(GT=2|1, GQ=2, DP=0, HQ=[18, 2])) Call(sample=NA00003, CallData(GT=2/2, GQ=35, DP=4, HQ=None)) Record(CHROM=20, POS=1230237, REF=T, ALT=[None]) Call(sample=NA00001, CallData(GT=0|0, GQ=54, DP=7, HQ=[56, 60])) Call(sample=NA00002, CallData(GT=0|0, GQ=48, DP=4, HQ=[51, 51])) Call(sample=NA00003, CallData(GT=0/0, GQ=61, DP=2, HQ=None)) Record(CHROM=20, POS=1234567, REF=GTCT, ALT=[G, GTACT]) Call(sample=NA00001, CallData(GT=./., GQ=35, DP=4)) Call(sample=NA00002, CallData(GT=0/2, GQ=17, DP=2)) Call(sample=NA00003, CallData(GT=1/1, GQ=40, DP=3)) CallData(GT=0|0, GQ=48, DP=1, HQ=[51, 51]) CallData(GT=1|0, GQ=48, DP=8, HQ=[51, 51]) CallData(GT=1/1, GQ=43, DP=5, HQ=[None, None]) CallData(GT=0|0, GQ=49, DP=3, HQ=[58, 50]) CallData(GT=0|1, GQ=3, DP=5, HQ=[65, 3]) CallData(GT=0/0, GQ=41, DP=3, HQ=None) CallData(GT=1|2, GQ=21, DP=6, HQ=[23, 27]) CallData(GT=2|1, GQ=2, DP=0, HQ=[18, 2]) CallData(GT=2/2, GQ=35, DP=4, HQ=None) CallData(GT=0|0, GQ=54, DP=7, HQ=[56, 60]) CallData(GT=0|0, GQ=48, DP=4, HQ=[51, 51]) CallData(GT=0/0, GQ=61, DP=2, HQ=None) CallData(GT=./., GQ=35, DP=4) CallData(GT=0/2, GQ=17, DP=2) CallData(GT=1/1, GQ=40, DP=3) /<>/.pybuild/pythonX.Y_3.6/build/vcf/test/null_genotype_mono.vcf ##fileformat=VCFv4.1 ##UnifiedGenotyper="analysis_type=UnifiedGenotyper input_file=[np_control.bam] read_buffer_size=null phone_home=STANDARD read_filter=[] intervals=[tests/read_chr.intervals] excludeIntervals=null interval_set_rule=UNION interval_merging=ALL reference_sequence=/data/reference/ucsc/hg19/ucsc.hg19.fasta rodBind=[] nonDeterministicRandomSeed=false downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=250 baq=OFF baqGapOpenPenalty=40.0 performanceLog=null useOriginalQualities=false defaultBaseQualities=-1 validation_strictness=SILENT unsafe=null num_threads=1 num_cpu_threads=null num_io_threads=null num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false logging_level=info log_to_file=null help=false genotype_likelihoods_model=SNP p_nonref_model=EXACT heterozygosity=0.001 pcr_error_rate=1.0E-4 genotyping_mode=DISCOVERY output_mode=EMIT_ALL_SITES standard_min_confidence_threshold_for_calling=30.0 standard_min_confidence_threshold_for_emitting=30.0 computeSLOD=false alleles=(RodBinding name= source=UNBOUND) min_base_quality_score=17 max_deletion_fraction=0.05 multiallelic=false max_alternate_alleles=5 min_indel_count_for_genotyping=5 indel_heterozygosity=1.25E-4 indelGapContinuationPenalty=10.0 indelGapOpenPenalty=45.0 indelHaplotypeSize=80 bandedIndel=false indelDebug=false ignoreSNPAlleles=false dbsnp=(RodBinding name= source=UNBOUND) out=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub NO_HEADER=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub sites_only=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub debug_file=null metrics_file=null annotation=[] excludeAnnotation=[] filter_mismatching_base_and_quals=false" ##reference=file:///data/reference/ucsc/hg19/ucsc.hg19.fasta ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA19239 chr1 65312657 . G . . . . GT ./. /usr/lib/python3.6/unittest/case.py:605: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<>/.pybuild/pythonX.Y_3.6/build/vcf/test/null_genotype_mono.vcf' mode='rt' encoding='UTF-8'> testMethod() ok test_trim (vcf.test.test_vcf.TestUtils) ... ok test_walk (vcf.test.test_vcf.TestUtils) ... /<>/.pybuild/pythonX.Y_3.6/build/vcf/test/test_vcf.py:1441: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<>/.pybuild/pythonX.Y_3.6/build/vcf/test/example-4.0.vcf' mode='rt' encoding='UTF-8'> reader1 = vcf.Reader(fh('walk_left.vcf')) /<>/.pybuild/pythonX.Y_3.6/build/vcf/test/test_vcf.py:1442: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<>/.pybuild/pythonX.Y_3.6/build/vcf/test/example-4.0.vcf' mode='rt' encoding='UTF-8'> reader2 = vcf.Reader(fh('example-4.0.vcf')) /<>/.pybuild/pythonX.Y_3.6/build/vcf/test/test_vcf.py:1458: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<>/.pybuild/pythonX.Y_3.6/build/vcf/test/walk_left.vcf' mode='rt' encoding='UTF-8'> reader1 = vcf.Reader(fh('issue-140-file1.vcf')) /<>/.pybuild/pythonX.Y_3.6/build/vcf/test/test_vcf.py:1459: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<>/.pybuild/pythonX.Y_3.6/build/vcf/test/example-4.0.vcf' mode='rt' encoding='UTF-8'> reader2 = vcf.Reader(fh('issue-140-file2.vcf')) /<>/.pybuild/pythonX.Y_3.6/build/vcf/test/test_vcf.py:1460: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<>/.pybuild/pythonX.Y_3.6/build/vcf/test/example-4.0.vcf' mode='rt' encoding='UTF-8'> reader3 = vcf.Reader(fh('issue-140-file3.vcf')) /usr/lib/python3.6/unittest/case.py:605: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<>/.pybuild/pythonX.Y_3.6/build/vcf/test/issue-140-file1.vcf' mode='rt' encoding='UTF-8'> testMethod() /usr/lib/python3.6/unittest/case.py:605: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<>/.pybuild/pythonX.Y_3.6/build/vcf/test/issue-140-file2.vcf' mode='rt' encoding='UTF-8'> testMethod() /usr/lib/python3.6/unittest/case.py:605: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<>/.pybuild/pythonX.Y_3.6/build/vcf/test/issue-140-file3.vcf' mode='rt' encoding='UTF-8'> testMethod() ok test_meta (vcf.test.test_vcf.TestGATKMeta) ... /usr/lib/python3.6/unittest/case.py:605: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<>/.pybuild/pythonX.Y_3.6/build/vcf/test/gatk_26_meta.vcf' mode='rt' encoding='UTF-8'> testMethod() ok test_read_uncalled (vcf.test.test_vcf.TestUncalledGenotypes) Test that uncalled genotypes are properly read into ... ok test_write_uncalled (vcf.test.test_vcf.TestUncalledGenotypes) Test that uncalled genotypes are written just as ... ok test_strelka (vcf.test.test_vcf.TestStrelka) ... /usr/lib/python3.6/unittest/case.py:605: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<>/.pybuild/pythonX.Y_3.6/build/vcf/test/strelka.vcf' mode='rt' encoding='UTF-8'> testMethod() ok ---------------------------------------------------------------------- Ran 95 tests in 3.667s OK (skipped=11) create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --with python2,python3 --buildsystem=pybuild dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild dh_auto_install -a -O--buildsystem=pybuild I: pybuild base:184: /usr/bin/python setup.py install --root /<>/debian/python-pyvcf running install running build running build_py running egg_info writing requirements to PyVCF.egg-info/requires.txt writing PyVCF.egg-info/PKG-INFO writing top-level names to PyVCF.egg-info/top_level.txt writing dependency_links to PyVCF.egg-info/dependency_links.txt writing entry points to PyVCF.egg-info/entry_points.txt reading manifest file 'PyVCF.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'PyVCF.egg-info/SOURCES.txt' running build_ext skipping 'vcf/cparse.c' Cython extension (up-to-date) running build_scripts running install_lib creating /<>/debian/python-pyvcf/usr creating /<>/debian/python-pyvcf/usr/lib creating /<>/debian/python-pyvcf/usr/lib/python2.7 creating /<>/debian/python-pyvcf/usr/lib/python2.7/dist-packages creating /<>/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf copying /<>/.pybuild/pythonX.Y_2.7/build/vcf/filters.py -> /<>/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf copying /<>/.pybuild/pythonX.Y_2.7/build/vcf/cparse.pyx -> /<>/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf copying /<>/.pybuild/pythonX.Y_2.7/build/vcf/parser.py -> /<>/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf copying /<>/.pybuild/pythonX.Y_2.7/build/vcf/model.py -> /<>/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf copying /<>/.pybuild/pythonX.Y_2.7/build/vcf/cparse.so -> /<>/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf copying /<>/.pybuild/pythonX.Y_2.7/build/vcf/__init__.py -> /<>/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf copying /<>/.pybuild/pythonX.Y_2.7/build/vcf/sample_filter.py -> /<>/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf creating /<>/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_2.7/build/vcf/test/issue-140-file3.vcf -> /<>/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_2.7/build/vcf/test/mixed-filtering.vcf -> /<>/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_2.7/build/vcf/test/issue-214.vcf -> /<>/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_2.7/build/vcf/test/FT.vcf -> /<>/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_2.7/build/vcf/test/tb.vcf.gz.tbi -> /<>/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_2.7/build/vcf/test/issue-140-file2.vcf -> /<>/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_2.7/build/vcf/test/metadata-whitespace.vcf -> /<>/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_2.7/build/vcf/test/tb.vcf.gz -> /<>/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_2.7/build/vcf/test/example-4.1-sv.vcf -> /<>/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_2.7/build/vcf/test/contig_idonly.vcf -> /<>/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_2.7/build/vcf/test/string_as_flag.vcf -> /<>/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_2.7/build/vcf/test/gonl.chr20.release4.gtc.vcf -> /<>/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_2.7/build/vcf/test/issue-201.vcf.gz.tbi -> /<>/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_2.7/build/vcf/test/__init__.py -> /<>/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_2.7/build/vcf/test/gatk.vcf -> /<>/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_2.7/build/vcf/test/parse-meta-line.vcf -> /<>/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_2.7/build/vcf/test/prof.py -> /<>/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_2.7/build/vcf/test/example-4.1-info-multiple-values.vcf -> /<>/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_2.7/build/vcf/test/walk_left.vcf -> /<>/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_2.7/build/vcf/test/info-type-character.vcf -> /<>/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_2.7/build/vcf/test/strelka.vcf -> /<>/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_2.7/build/vcf/test/issue-16.vcf -> /<>/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_2.7/build/vcf/test/issue-140-file1.vcf -> /<>/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_2.7/build/vcf/test/gatk_26_meta.vcf -> /<>/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_2.7/build/vcf/test/uncalled_genotypes.vcf -> /<>/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_2.7/build/vcf/test/example-4.2.vcf -> /<>/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_2.7/build/vcf/test/1kg.sites.vcf -> /<>/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_2.7/build/vcf/test/samtools.vcf -> /<>/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_2.7/build/vcf/test/1kg.vcf.gz -> /<>/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_2.7/build/vcf/test/example-4.0.vcf -> /<>/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_2.7/build/vcf/test/issue_49.vcf -> /<>/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_2.7/build/vcf/test/null_genotype_mono.vcf -> /<>/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_2.7/build/vcf/test/walk_refcall.vcf -> /<>/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_2.7/build/vcf/test/example-4.1-bnd.vcf -> /<>/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_2.7/build/vcf/test/freebayes.vcf -> /<>/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_2.7/build/vcf/test/example-4.1.vcf -> /<>/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_2.7/build/vcf/test/samples-space.vcf -> /<>/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_2.7/build/vcf/test/example-4.1-ploidy.vcf -> /<>/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_2.7/build/vcf/test/bcftools.vcf -> /<>/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_2.7/build/vcf/test/test_vcf.py -> /<>/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_2.7/build/vcf/test/issue-201.vcf.gz -> /<>/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_2.7/build/vcf/utils.py -> /<>/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf byte-compiling /<>/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/filters.py to filters.pyc byte-compiling /<>/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/parser.py to parser.pyc byte-compiling /<>/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/model.py to model.pyc byte-compiling /<>/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/__init__.py to __init__.pyc byte-compiling /<>/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/sample_filter.py to sample_filter.pyc byte-compiling /<>/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test/__init__.py to __init__.pyc byte-compiling /<>/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test/prof.py to prof.pyc byte-compiling /<>/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test/test_vcf.py to test_vcf.pyc byte-compiling /<>/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/utils.py to utils.pyc running install_egg_info Copying PyVCF.egg-info to /<>/debian/python-pyvcf/usr/lib/python2.7/dist-packages/PyVCF-0.6.8.egg-info Skipping SOURCES.txt running install_scripts creating /<>/debian/python-pyvcf/usr/bin copying build/scripts-2.7/vcf_melt -> /<>/debian/python-pyvcf/usr/bin copying build/scripts-2.7/vcf_filter.py -> /<>/debian/python-pyvcf/usr/bin copying build/scripts-2.7/vcf_sample_filter.py -> /<>/debian/python-pyvcf/usr/bin changing mode of /<>/debian/python-pyvcf/usr/bin/vcf_melt to 775 changing mode of /<>/debian/python-pyvcf/usr/bin/vcf_filter.py to 775 changing mode of /<>/debian/python-pyvcf/usr/bin/vcf_sample_filter.py to 775 I: pybuild base:184: /usr/bin/python3 setup.py install --root /<>/debian/python3-pyvcf running install running build running build_py running egg_info writing PyVCF.egg-info/PKG-INFO writing dependency_links to PyVCF.egg-info/dependency_links.txt writing entry points to PyVCF.egg-info/entry_points.txt writing requirements to PyVCF.egg-info/requires.txt writing top-level names to PyVCF.egg-info/top_level.txt reading manifest file 'PyVCF.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'PyVCF.egg-info/SOURCES.txt' running build_ext skipping 'vcf/cparse.c' Cython extension (up-to-date) running build_scripts running install_lib creating /<>/debian/python3-pyvcf/usr creating /<>/debian/python3-pyvcf/usr/lib creating /<>/debian/python3-pyvcf/usr/lib/python3.6 creating /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages creating /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf copying /<>/.pybuild/pythonX.Y_3.6/build/vcf/filters.py -> /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf creating /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf/__pycache__ copying /<>/.pybuild/pythonX.Y_3.6/build/vcf/__pycache__/sample_filter.cpython-36.pyc -> /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf/__pycache__ copying /<>/.pybuild/pythonX.Y_3.6/build/vcf/__pycache__/__init__.cpython-36.pyc -> /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf/__pycache__ copying /<>/.pybuild/pythonX.Y_3.6/build/vcf/__pycache__/utils.cpython-36.pyc -> /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf/__pycache__ copying /<>/.pybuild/pythonX.Y_3.6/build/vcf/__pycache__/model.cpython-36.pyc -> /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf/__pycache__ copying /<>/.pybuild/pythonX.Y_3.6/build/vcf/__pycache__/filters.cpython-36.pyc -> /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf/__pycache__ copying /<>/.pybuild/pythonX.Y_3.6/build/vcf/__pycache__/parser.cpython-36.pyc -> /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf/__pycache__ copying /<>/.pybuild/pythonX.Y_3.6/build/vcf/cparse.pyx -> /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf copying /<>/.pybuild/pythonX.Y_3.6/build/vcf/parser.py -> /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf copying /<>/.pybuild/pythonX.Y_3.6/build/vcf/model.py -> /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf copying /<>/.pybuild/pythonX.Y_3.6/build/vcf/__init__.py -> /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf copying /<>/.pybuild/pythonX.Y_3.6/build/vcf/cparse.cpython-36m-s390x-linux-gnu.so -> /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf copying /<>/.pybuild/pythonX.Y_3.6/build/vcf/sample_filter.py -> /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf creating /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_3.6/build/vcf/test/issue-140-file3.vcf -> /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_3.6/build/vcf/test/mixed-filtering.vcf -> /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_3.6/build/vcf/test/issue-214.vcf -> /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_3.6/build/vcf/test/FT.vcf -> /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_3.6/build/vcf/test/tb.vcf.gz.tbi -> /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_3.6/build/vcf/test/issue-140-file2.vcf -> /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_3.6/build/vcf/test/metadata-whitespace.vcf -> /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_3.6/build/vcf/test/tb.vcf.gz -> /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_3.6/build/vcf/test/example-4.1-sv.vcf -> /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_3.6/build/vcf/test/contig_idonly.vcf -> /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf/test creating /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf/test/__pycache__ copying /<>/.pybuild/pythonX.Y_3.6/build/vcf/test/__pycache__/__init__.cpython-36.pyc -> /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf/test/__pycache__ copying /<>/.pybuild/pythonX.Y_3.6/build/vcf/test/__pycache__/test_vcf.cpython-36.pyc -> /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf/test/__pycache__ copying /<>/.pybuild/pythonX.Y_3.6/build/vcf/test/string_as_flag.vcf -> /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_3.6/build/vcf/test/gonl.chr20.release4.gtc.vcf -> /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_3.6/build/vcf/test/issue-201.vcf.gz.tbi -> /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_3.6/build/vcf/test/__init__.py -> /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_3.6/build/vcf/test/gatk.vcf -> /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_3.6/build/vcf/test/parse-meta-line.vcf -> /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_3.6/build/vcf/test/prof.py -> /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_3.6/build/vcf/test/example-4.1-info-multiple-values.vcf -> /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_3.6/build/vcf/test/walk_left.vcf -> /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_3.6/build/vcf/test/info-type-character.vcf -> /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_3.6/build/vcf/test/strelka.vcf -> /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_3.6/build/vcf/test/issue-16.vcf -> /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_3.6/build/vcf/test/issue-140-file1.vcf -> /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_3.6/build/vcf/test/gatk_26_meta.vcf -> /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_3.6/build/vcf/test/uncalled_genotypes.vcf -> /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_3.6/build/vcf/test/example-4.2.vcf -> /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_3.6/build/vcf/test/1kg.sites.vcf -> /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_3.6/build/vcf/test/samtools.vcf -> /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_3.6/build/vcf/test/1kg.vcf.gz -> /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_3.6/build/vcf/test/example-4.0.vcf -> /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_3.6/build/vcf/test/issue_49.vcf -> /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_3.6/build/vcf/test/null_genotype_mono.vcf -> /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_3.6/build/vcf/test/walk_refcall.vcf -> /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_3.6/build/vcf/test/example-4.1-bnd.vcf -> /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_3.6/build/vcf/test/freebayes.vcf -> /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_3.6/build/vcf/test/example-4.1.vcf -> /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_3.6/build/vcf/test/samples-space.vcf -> /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_3.6/build/vcf/test/example-4.1-ploidy.vcf -> /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_3.6/build/vcf/test/bcftools.vcf -> /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_3.6/build/vcf/test/test_vcf.py -> /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_3.6/build/vcf/test/issue-201.vcf.gz -> /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf/test copying /<>/.pybuild/pythonX.Y_3.6/build/vcf/utils.py -> /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf byte-compiling /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf/filters.py to filters.cpython-36.pyc byte-compiling /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf/parser.py to parser.cpython-36.pyc byte-compiling /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf/model.py to model.cpython-36.pyc byte-compiling /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf/__init__.py to __init__.cpython-36.pyc byte-compiling /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf/sample_filter.py to sample_filter.cpython-36.pyc byte-compiling /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf/test/__init__.py to __init__.cpython-36.pyc byte-compiling /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf/test/prof.py to prof.cpython-36.pyc byte-compiling /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf/test/test_vcf.py to test_vcf.cpython-36.pyc byte-compiling /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/vcf/utils.py to utils.cpython-36.pyc running install_egg_info Copying PyVCF.egg-info to /<>/debian/python3-pyvcf/usr/lib/python3.6/dist-packages/PyVCF-0.6.8.egg-info Skipping SOURCES.txt running install_scripts creating /<>/debian/python3-pyvcf/usr/bin copying build/scripts-3.6/vcf_melt -> /<>/debian/python3-pyvcf/usr/bin copying build/scripts-3.6/vcf_filter.py -> /<>/debian/python3-pyvcf/usr/bin copying build/scripts-3.6/vcf_sample_filter.py -> /<>/debian/python3-pyvcf/usr/bin changing mode of /<>/debian/python3-pyvcf/usr/bin/vcf_melt to 775 changing mode of /<>/debian/python3-pyvcf/usr/bin/vcf_filter.py to 775 changing mode of /<>/debian/python3-pyvcf/usr/bin/vcf_sample_filter.py to 775 debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install # move testdata to separate dir mkdir -p debian/python-pyvcf-examples/usr/share/doc/python-pyvcf-examples mv `find debian/python-pyvcf -type d -name test | head -n 1` debian/python-pyvcf-examples/usr/share/doc/python-pyvcf-examples find debian/python3-pyvcf -type d -name test | xargs rm -rf find debian/python-pyvcf-examples/usr/share/doc/python-pyvcf-examples -name "*.pyc" -delete mkdir -p debian/pyvcf/usr mv debian/python3-pyvcf/usr/bin debian/pyvcf/usr # strip .py extension for py in debian/pyvcf/usr/bin/*.py ; do \ mv ${py} debian/pyvcf/usr/bin/`basename ${py} .py` ; \ done rm -rf debian/python-pyvcf/usr/bin make[1]: Leaving directory '/<>' dh_installdocs -a -O--buildsystem=pybuild dh_installchangelogs -a -O--buildsystem=pybuild dh_installman -a -O--buildsystem=pybuild dh_python2 -a -O--buildsystem=pybuild I: dh_python2 fs:322: renaming cparse.so to cparse.s390x-linux-gnu.so dh_python3 -a -O--buildsystem=pybuild dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild dh_fixperms -a -O--buildsystem=pybuild dh_missing -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python3-pyvcf/usr/lib/python3/dist-packages/vcf/cparse.cpython-36m-s390x-linux-gnu.so was not linked against libpthread.so.0 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/cparse.s390x-linux-gnu.so was not linked against libpthread.so.0 (it uses none of the library's symbols) dh_installdeb -a -O--buildsystem=pybuild dh_gencontrol -a -O--buildsystem=pybuild dpkg-gencontrol: warning: package python3-pyvcf: unused substitution variable ${python3:Provides} dpkg-gencontrol: warning: package python3-pyvcf: unused substitution variable ${python3:Versions} dpkg-gencontrol: warning: package python-pyvcf: unused substitution variable ${python:Provides} dpkg-gencontrol: warning: package python-pyvcf: unused substitution variable ${python:Versions} dpkg-gencontrol: warning: package python3-pyvcf: unused substitution variable ${python3:Versions} dpkg-gencontrol: warning: package python3-pyvcf: unused substitution variable ${python3:Provides} dpkg-gencontrol: warning: package python-pyvcf: unused substitution variable ${python:Provides} dpkg-gencontrol: warning: package python-pyvcf: unused substitution variable ${python:Versions} dh_md5sums -a -O--buildsystem=pybuild dh_builddeb -a -O--buildsystem=pybuild INFO: pkgstriptranslations version 131 INFO: pkgstriptranslations version 131 INFO: pkgstriptranslations version 131 INFO: pkgstriptranslations version 131 pkgstriptranslations: processing python-pyvcf (in debian/python-pyvcf); do_strip: , oemstrip: pkgstriptranslations: processing python3-pyvcf (in debian/python3-pyvcf); do_strip: , oemstrip: pkgstriptranslations: processing python3-pyvcf-dbgsym (in debian/.debhelper/python3-pyvcf/dbgsym-root); do_strip: , oemstrip: pkgstriptranslations: processing python-pyvcf-dbgsym (in debian/.debhelper/python-pyvcf/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/python-pyvcf/DEBIAN/control, package python-pyvcf, directory debian/python-pyvcf pkgstripfiles: processing control file: debian/.debhelper/python3-pyvcf/dbgsym-root/DEBIAN/control, package python3-pyvcf-dbgsym, directory debian/.debhelper/python3-pyvcf/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package python3-pyvcf-dbgsym ... pkgstripfiles: Running PNG optimization (using 4 cpus) for package python-pyvcf ... pkgstripfiles: No PNG files. pkgstripfiles: No PNG files. dpkg-deb: building package 'python3-pyvcf-dbgsym' in 'debian/.debhelper/scratch-space/build-python3-pyvcf/python3-pyvcf-dbgsym_0.6.8-1ubuntu4_s390x.deb'. dpkg-deb: building package 'python-pyvcf' in '../python-pyvcf_0.6.8-1ubuntu4_s390x.deb'. Renaming python3-pyvcf-dbgsym_0.6.8-1ubuntu4_s390x.deb to python3-pyvcf-dbgsym_0.6.8-1ubuntu4_s390x.ddeb pkgstripfiles: processing control file: debian/.debhelper/python-pyvcf/dbgsym-root/DEBIAN/control, package python-pyvcf-dbgsym, directory debian/.debhelper/python-pyvcf/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package python-pyvcf-dbgsym ... pkgstripfiles: No PNG files. dpkg-deb: building package 'python-pyvcf-dbgsym' in 'debian/.debhelper/scratch-space/build-python-pyvcf/python-pyvcf-dbgsym_0.6.8-1ubuntu4_s390x.deb'. Renaming python-pyvcf-dbgsym_0.6.8-1ubuntu4_s390x.deb to python-pyvcf-dbgsym_0.6.8-1ubuntu4_s390x.ddeb pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/python3-pyvcf/DEBIAN/control, package python3-pyvcf, directory debian/python3-pyvcf pkgstripfiles: Running PNG optimization (using 4 cpus) for package python3-pyvcf ... pkgstripfiles: No PNG files. dpkg-deb: building package 'python3-pyvcf' in '../python3-pyvcf_0.6.8-1ubuntu4_s390x.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../python-pyvcf_0.6.8-1ubuntu4_s390x.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build python-pyvcf-0.6.8 dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20170805-1704 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ python-pyvcf_0.6.8-1ubuntu4_s390x.changes: ------------------------------------------ Format: 1.8 Date: Sat, 05 Aug 2017 16:27:52 +0000 Source: python-pyvcf Binary: python-pyvcf python3-pyvcf pyvcf python-pyvcf-examples Architecture: s390x Version: 0.6.8-1ubuntu4 Distribution: artful-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Matthias Klose Description: python-pyvcf - Variant Call Format (VCF) parser for Python python-pyvcf-examples - Example data for Variant Call Format (VCF) parser for Python python3-pyvcf - Variant Call Format (VCF) parser for Python 3 pyvcf - helper scripts for Variant Call Format (VCF) parser Changes: python-pyvcf (0.6.8-1ubuntu4) artful; urgency=medium . * No-change rebuild to build to drop python3.5. 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The format has been developed with the advent of large-scale genotyping and DNA sequencing projects, such as the 1000 Genomes Project. . The intent of this module is to mimic the ``csv`` module in the Python stdlib, as opposed to more flexible serialization formats like JSON or YAML. ``vcf`` will attempt to parse the content of each record based on the data types specified in the meta-information lines -- specifically the ##INFO and ##FORMAT lines. If these lines are missing or incomplete, it will check against the reserved types mentioned in the spec. Failing that, it will just return strings. . This package provides the Python 2 modules. Original-Maintainer: Debian Med Packaging Team drwxr-xr-x root/root 0 2017-08-05 16:27 ./ drwxr-xr-x root/root 0 2017-08-05 16:27 ./usr/ drwxr-xr-x root/root 0 2017-08-05 16:27 ./usr/lib/ drwxr-xr-x root/root 0 2017-08-05 16:27 ./usr/lib/python2.7/ drwxr-xr-x root/root 0 2017-08-05 16:27 ./usr/lib/python2.7/dist-packages/ drwxr-xr-x root/root 0 2017-08-05 16:27 ./usr/lib/python2.7/dist-packages/PyVCF-0.6.8.egg-info/ -rw-r--r-- root/root 1082 2017-08-05 16:27 ./usr/lib/python2.7/dist-packages/PyVCF-0.6.8.egg-info/PKG-INFO -rw-r--r-- root/root 1 2017-08-05 16:27 ./usr/lib/python2.7/dist-packages/PyVCF-0.6.8.egg-info/dependency_links.txt -rw-r--r-- root/root 232 2017-08-05 16:27 ./usr/lib/python2.7/dist-packages/PyVCF-0.6.8.egg-info/entry_points.txt -rw-r--r-- root/root 0 2017-08-05 16:27 ./usr/lib/python2.7/dist-packages/PyVCF-0.6.8.egg-info/requires.txt -rw-r--r-- root/root 4 2017-08-05 16:27 ./usr/lib/python2.7/dist-packages/PyVCF-0.6.8.egg-info/top_level.txt drwxr-xr-x root/root 0 2017-08-05 16:27 ./usr/lib/python2.7/dist-packages/vcf/ -rw-r--r-- root/root 384 2016-03-18 16:17 ./usr/lib/python2.7/dist-packages/vcf/__init__.py -rw-r--r-- root/root 2398 2016-03-18 16:16 ./usr/lib/python2.7/dist-packages/vcf/cparse.pyx -rw-r--r-- root/root 52856 2017-08-05 16:27 ./usr/lib/python2.7/dist-packages/vcf/cparse.s390x-linux-gnu.so -rw-r--r-- root/root 6240 2016-03-18 16:16 ./usr/lib/python2.7/dist-packages/vcf/filters.py -rw-r--r-- root/root 23718 2016-03-18 16:16 ./usr/lib/python2.7/dist-packages/vcf/model.py -rw-r--r-- root/root 27506 2016-03-18 16:16 ./usr/lib/python2.7/dist-packages/vcf/parser.py -rw-r--r-- root/root 4026 2016-03-18 16:16 ./usr/lib/python2.7/dist-packages/vcf/sample_filter.py -rw-r--r-- root/root 3267 2016-03-18 16:16 ./usr/lib/python2.7/dist-packages/vcf/utils.py drwxr-xr-x root/root 0 2017-08-05 16:27 ./usr/share/ drwxr-xr-x root/root 0 2017-08-05 16:27 ./usr/share/doc/ drwxr-xr-x root/root 0 2017-08-05 16:27 ./usr/share/doc/python-pyvcf/ -rw-r--r-- root/root 632 2017-08-05 16:27 ./usr/share/doc/python-pyvcf/changelog.Debian.gz -rw-r--r-- root/root 1909 2016-12-02 19:33 ./usr/share/doc/python-pyvcf/copyright python3-pyvcf_0.6.8-1ubuntu4_s390x.deb -------------------------------------- new debian package, version 2.0. size 36720 bytes: control archive=1759 bytes. 1312 bytes, 27 lines control 1314 bytes, 15 lines md5sums 165 bytes, 9 lines * postinst #!/bin/sh 401 bytes, 12 lines * prerm #!/bin/sh Package: python3-pyvcf Source: python-pyvcf Version: 0.6.8-1ubuntu4 Architecture: s390x Maintainer: Ubuntu Developers Installed-Size: 147 Depends: libc6 (>= 2.4), python3 (<< 3.7), python3 (>= 3.6~), python3-pkg-resources, python3:any (>= 3.3.2-2~) Section: python Priority: optional Homepage: https://pypi.python.org/pypi/PyVCF Description: Variant Call Format (VCF) parser for Python 3 The Variant Call Format (VCF) specifies the format of a text file used in bioinformatics for storing gene sequence variations. The format has been developed with the advent of large-scale genotyping and DNA sequencing projects, such as the 1000 Genomes Project. . The intent of this module is to mimic the ``csv`` module in the Python stdlib, as opposed to more flexible serialization formats like JSON or YAML. ``vcf`` will attempt to parse the content of each record based on the data types specified in the meta-information lines -- specifically the ##INFO and ##FORMAT lines. If these lines are missing or incomplete, it will check against the reserved types mentioned in the spec. Failing that, it will just return strings. . This package provides the Python 3 modules. Original-Maintainer: Debian Med Packaging Team drwxr-xr-x root/root 0 2017-08-05 16:27 ./ drwxr-xr-x root/root 0 2017-08-05 16:27 ./usr/ drwxr-xr-x root/root 0 2017-08-05 16:27 ./usr/lib/ drwxr-xr-x root/root 0 2017-08-05 16:27 ./usr/lib/python3/ drwxr-xr-x root/root 0 2017-08-05 16:27 ./usr/lib/python3/dist-packages/ drwxr-xr-x root/root 0 2017-08-05 16:27 ./usr/lib/python3/dist-packages/PyVCF-0.6.8.egg-info/ -rw-r--r-- root/root 1082 2017-08-05 16:27 ./usr/lib/python3/dist-packages/PyVCF-0.6.8.egg-info/PKG-INFO -rw-r--r-- root/root 1 2017-08-05 16:27 ./usr/lib/python3/dist-packages/PyVCF-0.6.8.egg-info/dependency_links.txt -rw-r--r-- root/root 232 2017-08-05 16:27 ./usr/lib/python3/dist-packages/PyVCF-0.6.8.egg-info/entry_points.txt -rw-r--r-- root/root 0 2017-08-05 16:27 ./usr/lib/python3/dist-packages/PyVCF-0.6.8.egg-info/requires.txt -rw-r--r-- root/root 4 2017-08-05 16:27 ./usr/lib/python3/dist-packages/PyVCF-0.6.8.egg-info/top_level.txt drwxr-xr-x root/root 0 2017-08-05 16:27 ./usr/lib/python3/dist-packages/vcf/ -rw-r--r-- root/root 384 2016-03-18 16:17 ./usr/lib/python3/dist-packages/vcf/__init__.py -rw-r--r-- root/root 57056 2017-08-05 16:27 ./usr/lib/python3/dist-packages/vcf/cparse.cpython-36m-s390x-linux-gnu.so -rw-r--r-- root/root 2398 2016-03-18 16:16 ./usr/lib/python3/dist-packages/vcf/cparse.pyx -rw-r--r-- root/root 6240 2016-03-18 16:16 ./usr/lib/python3/dist-packages/vcf/filters.py -rw-r--r-- root/root 23697 2017-08-05 16:27 ./usr/lib/python3/dist-packages/vcf/model.py -rw-r--r-- root/root 27487 2017-08-05 16:27 ./usr/lib/python3/dist-packages/vcf/parser.py -rw-r--r-- root/root 4023 2017-08-05 16:27 ./usr/lib/python3/dist-packages/vcf/sample_filter.py -rw-r--r-- root/root 3278 2017-08-05 16:27 ./usr/lib/python3/dist-packages/vcf/utils.py drwxr-xr-x root/root 0 2017-08-05 16:27 ./usr/share/ drwxr-xr-x root/root 0 2017-08-05 16:27 ./usr/share/doc/ drwxr-xr-x root/root 0 2017-08-05 16:27 ./usr/share/doc/python3-pyvcf/ -rw-r--r-- root/root 632 2017-08-05 16:27 ./usr/share/doc/python3-pyvcf/changelog.Debian.gz -rw-r--r-- root/root 1909 2016-12-02 19:33 ./usr/share/doc/python3-pyvcf/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Not removing build depends: as requested Keeping session: +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: s390x Build-Space: 8448 Build-Time: 26 Distribution: artful-proposed Host Architecture: s390x Install-Time: 72 Job: python-pyvcf_0.6.8-1ubuntu4.dsc Machine Architecture: s390x Package: python-pyvcf Package-Time: 98 Source-Version: 0.6.8-1ubuntu4 Space: 8448 Status: successful Version: 0.6.8-1ubuntu4 -------------------------------------------------------------------------------- Finished at 20170805-1704 Build needed 00:01:38, 8448k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-13203696'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-13203696/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-13203696'] Unmounting chroot for build PACKAGEBUILD-13203696... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-13203696'] Removing build PACKAGEBUILD-13203696