python-pyvcf 0.6.8+git20170215.476169c-7 source package in Ubuntu
Changelog
python-pyvcf (0.6.8+git20170215.476169c-7) unstable; urgency=medium * Test-Depends: python3-pytest Closes: #951863 * Standards-Version: 4.5.0 (routine-update) * Add salsa-ci file (routine-update) -- Andreas Tille <email address hidden> Sat, 22 Feb 2020 17:08:31 +0100
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- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any all
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
Series | Published | Component | Section | |
---|---|---|---|---|
Focal | release | universe | misc |
Downloads
File | Size | SHA-256 Checksum |
---|---|---|
python-pyvcf_0.6.8+git20170215.476169c-7.dsc | 2.4 KiB | 641c6b5d0b355250c1ecb14457ba62b1b962a68e2902ce9b1e7eb88e00610ff4 |
python-pyvcf_0.6.8+git20170215.476169c.orig.tar.xz | 913.8 KiB | df89a50c3b0faed0acffe86377ceca77053b2fc516de95e4a14623bbef42fb87 |
python-pyvcf_0.6.8+git20170215.476169c-7.debian.tar.xz | 5.3 KiB | 69c3007d81632cce6612894e43bce863107bae1c7447dc9aacbb19e91f946593 |
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Binary packages built by this source
- python-pyvcf-examples: No summary available for python-pyvcf-examples in ubuntu hirsute.
No description available for python-
pyvcf-examples in ubuntu hirsute.
- python3-vcf: Variant Call Format (VCF) parser for Python 3
The Variant Call Format (VCF) specifies the format of a text file used
in bioinformatics for storing gene sequence variations. The format has
been developed with the advent of large-scale genotyping and DNA
sequencing projects, such as the 1000 Genomes Project.
.
The intent of this module is to mimic the ``csv`` module in the Python
stdlib, as opposed to more flexible serialization formats like JSON or
YAML. ``vcf`` will attempt to parse the content of each record based on
the data types specified in the meta-information lines -- specifically
the ##INFO and
##FORMAT lines. If these lines are missing or incomplete, it will check
against the reserved types mentioned in the spec. Failing that, it will
just return strings.
.
This package provides the Python 3 modules.
- python3-vcf-dbgsym: debug symbols for python3-vcf
- pyvcf: helper scripts for Variant Call Format (VCF) parser
The Variant Call Format (VCF) specifies the format of a text file used
in bioinformatics for storing gene sequence variations. The format has
been developed with the advent of large-scale genotyping and DNA
sequencing projects, such as the 1000 Genomes Project.
.
The intent of this module is to mimic the ``csv`` module in the Python
stdlib, as opposed to more flexible serialization formats like JSON or
YAML. ``vcf`` will attempt to parse the content of each record based on
the data types specified in the meta-information lines -- specifically
the ##INFO and
##FORMAT lines. If these lines are missing or incomplete, it will check
against the reserved types mentioned in the spec. Failing that, it will
just return strings.
.
This package provides helper scripts using python3-pyvcf.