python-pyvcf 0.6.8+git20170215.476169c-7 source package in Ubuntu

Changelog

python-pyvcf (0.6.8+git20170215.476169c-7) unstable; urgency=medium

  * Test-Depends: python3-pytest
    Closes: #951863
  * Standards-Version: 4.5.0 (routine-update)
  * Add salsa-ci file (routine-update)

 -- Andreas Tille <email address hidden>  Sat, 22 Feb 2020 17:08:31 +0100

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Uploaded by:
Debian Med on 2020-02-22
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any all
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Groovy release on 2020-04-24 universe misc
Focal release on 2020-02-24 universe misc

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Binary packages built by this source

python-pyvcf-examples: Example data for Variant Call Format (VCF) parser for Python

 The Variant Call Format (VCF) specifies the format of a text file used
 in bioinformatics for storing gene sequence variations. The format has
 been developed with the advent of large-scale genotyping and DNA
 sequencing projects, such as the 1000 Genomes Project.
 .
 The intent of this module is to mimic the ``csv`` module in the Python
 stdlib, as opposed to more flexible serialization formats like JSON or
 YAML. ``vcf`` will attempt to parse the content of each record based on
 the data types specified in the meta-information lines -- specifically
 the ##INFO and
 ##FORMAT lines. If these lines are missing or incomplete, it will check
 against the reserved types mentioned in the spec. Failing that, it will
 just return strings.
 .
 This package provides example data to test the Python modules.

python3-vcf: Variant Call Format (VCF) parser for Python 3

 The Variant Call Format (VCF) specifies the format of a text file used
 in bioinformatics for storing gene sequence variations. The format has
 been developed with the advent of large-scale genotyping and DNA
 sequencing projects, such as the 1000 Genomes Project.
 .
 The intent of this module is to mimic the ``csv`` module in the Python
 stdlib, as opposed to more flexible serialization formats like JSON or
 YAML. ``vcf`` will attempt to parse the content of each record based on
 the data types specified in the meta-information lines -- specifically
 the ##INFO and
 ##FORMAT lines. If these lines are missing or incomplete, it will check
 against the reserved types mentioned in the spec. Failing that, it will
 just return strings.
 .
 This package provides the Python 3 modules.

python3-vcf-dbgsym: debug symbols for python3-vcf
pyvcf: helper scripts for Variant Call Format (VCF) parser

 The Variant Call Format (VCF) specifies the format of a text file used
 in bioinformatics for storing gene sequence variations. The format has
 been developed with the advent of large-scale genotyping and DNA
 sequencing projects, such as the 1000 Genomes Project.
 .
 The intent of this module is to mimic the ``csv`` module in the Python
 stdlib, as opposed to more flexible serialization formats like JSON or
 YAML. ``vcf`` will attempt to parse the content of each record based on
 the data types specified in the meta-information lines -- specifically
 the ##INFO and
 ##FORMAT lines. If these lines are missing or incomplete, it will check
 against the reserved types mentioned in the spec. Failing that, it will
 just return strings.
 .
 This package provides helper scripts using python3-pyvcf.