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python-pyvcf package

python-pyvcf 0.6.8+git20170215.476169c-6ubuntu1 source package in Ubuntu

Changelog

python-pyvcf (0.6.8+git20170215.476169c-6ubuntu1) focal; urgency=medium

  * Add test dependencies to debian/tests/control.

 -- Matthias Klose <email address hidden>  Sat, 22 Feb 2020 14:23:22 +0100

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Uploaded by:
Matthias Klose
Uploaded to:
Focal
Original maintainer:
Debian Med
Architectures:
any all
Section:
misc
Urgency:
Medium Urgency

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python-pyvcf_0.6.8+git20170215.476169c.orig.tar.xz 913.8 KiB df89a50c3b0faed0acffe86377ceca77053b2fc516de95e4a14623bbef42fb87
python-pyvcf_0.6.8+git20170215.476169c-6ubuntu1.debian.tar.xz 5.3 KiB 6580a6fdf1194f58936790f4ad55d218d65e73e5a1a8f24a46899aba7ee83e55
python-pyvcf_0.6.8+git20170215.476169c-6ubuntu1.dsc 2.4 KiB 1311cf38aa52396f9b3442a1421f5962fde781c82017be86ed0e33ef1679a6c9

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Binary packages built by this source

python-pyvcf-examples: Example data for Variant Call Format (VCF) parser for Python

 The Variant Call Format (VCF) specifies the format of a text file used
 in bioinformatics for storing gene sequence variations. The format has
 been developed with the advent of large-scale genotyping and DNA
 sequencing projects, such as the 1000 Genomes Project.
 .
 The intent of this module is to mimic the ``csv`` module in the Python
 stdlib, as opposed to more flexible serialization formats like JSON or
 YAML. ``vcf`` will attempt to parse the content of each record based on
 the data types specified in the meta-information lines -- specifically
 the ##INFO and
 ##FORMAT lines. If these lines are missing or incomplete, it will check
 against the reserved types mentioned in the spec. Failing that, it will
 just return strings.
 .
 This package provides example data to test the Python modules.

python3-vcf: Variant Call Format (VCF) parser for Python 3

 The Variant Call Format (VCF) specifies the format of a text file used
 in bioinformatics for storing gene sequence variations. The format has
 been developed with the advent of large-scale genotyping and DNA
 sequencing projects, such as the 1000 Genomes Project.
 .
 The intent of this module is to mimic the ``csv`` module in the Python
 stdlib, as opposed to more flexible serialization formats like JSON or
 YAML. ``vcf`` will attempt to parse the content of each record based on
 the data types specified in the meta-information lines -- specifically
 the ##INFO and
 ##FORMAT lines. If these lines are missing or incomplete, it will check
 against the reserved types mentioned in the spec. Failing that, it will
 just return strings.
 .
 This package provides the Python 3 modules.

python3-vcf-dbgsym: debug symbols for python3-vcf
pyvcf: helper scripts for Variant Call Format (VCF) parser

 The Variant Call Format (VCF) specifies the format of a text file used
 in bioinformatics for storing gene sequence variations. The format has
 been developed with the advent of large-scale genotyping and DNA
 sequencing projects, such as the 1000 Genomes Project.
 .
 The intent of this module is to mimic the ``csv`` module in the Python
 stdlib, as opposed to more flexible serialization formats like JSON or
 YAML. ``vcf`` will attempt to parse the content of each record based on
 the data types specified in the meta-information lines -- specifically
 the ##INFO and
 ##FORMAT lines. If these lines are missing or incomplete, it will check
 against the reserved types mentioned in the spec. Failing that, it will
 just return strings.
 .
 This package provides helper scripts using python3-pyvcf.