python-pyvcf 0.6.8+git20170215.476169c-3 source package in Ubuntu
Changelog
python-pyvcf (0.6.8+git20170215.476169c-3) unstable; urgency=medium
* Rename Python3 module package from python3-pyvcf to python3-vcf
to follow DPMT policy
* Standards-Version: 4.4.1
-- Andreas Tille <email address hidden> Fri, 29 Nov 2019 12:47:44 +0100
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- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any all
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section |
|---|
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| python-pyvcf_0.6.8+git20170215.476169c-3.dsc | 2.3 KiB | a67633ed08cfd406822e90184051965e1d35b72174351e01fc168158db5da856 |
| python-pyvcf_0.6.8+git20170215.476169c.orig.tar.xz | 913.8 KiB | df89a50c3b0faed0acffe86377ceca77053b2fc516de95e4a14623bbef42fb87 |
| python-pyvcf_0.6.8+git20170215.476169c-3.debian.tar.xz | 4.6 KiB | c53e9e3d56f9ec9314ee611a66a71e2e00da1378679a9145334e809917250826 |
Available diffs
No changes file available.
Binary packages built by this source
- python-pyvcf-examples: Example data for Variant Call Format (VCF) parser for Python
The Variant Call Format (VCF) specifies the format of a text file used
in bioinformatics for storing gene sequence variations. The format has
been developed with the advent of large-scale genotyping and DNA
sequencing projects, such as the 1000 Genomes Project.
.
The intent of this module is to mimic the ``csv`` module in the Python
stdlib, as opposed to more flexible serialization formats like JSON or
YAML. ``vcf`` will attempt to parse the content of each record based on
the data types specified in the meta-information lines -- specifically
the ##INFO and
##FORMAT lines. If these lines are missing or incomplete, it will check
against the reserved types mentioned in the spec. Failing that, it will
just return strings.
.
This package provides example data to test the Python modules.
- python3-vcf: Variant Call Format (VCF) parser for Python 3
The Variant Call Format (VCF) specifies the format of a text file used
in bioinformatics for storing gene sequence variations. The format has
been developed with the advent of large-scale genotyping and DNA
sequencing projects, such as the 1000 Genomes Project.
.
The intent of this module is to mimic the ``csv`` module in the Python
stdlib, as opposed to more flexible serialization formats like JSON or
YAML. ``vcf`` will attempt to parse the content of each record based on
the data types specified in the meta-information lines -- specifically
the ##INFO and
##FORMAT lines. If these lines are missing or incomplete, it will check
against the reserved types mentioned in the spec. Failing that, it will
just return strings.
.
This package provides the Python 3 modules.
- python3-vcf-dbgsym: debug symbols for python3-vcf
- pyvcf: helper scripts for Variant Call Format (VCF) parser
The Variant Call Format (VCF) specifies the format of a text file used
in bioinformatics for storing gene sequence variations. The format has
been developed with the advent of large-scale genotyping and DNA
sequencing projects, such as the 1000 Genomes Project.
.
The intent of this module is to mimic the ``csv`` module in the Python
stdlib, as opposed to more flexible serialization formats like JSON or
YAML. ``vcf`` will attempt to parse the content of each record based on
the data types specified in the meta-information lines -- specifically
the ##INFO and
##FORMAT lines. If these lines are missing or incomplete, it will check
against the reserved types mentioned in the spec. Failing that, it will
just return strings.
.
This package provides helper scripts using python3-pyvcf.
