python-pyvcf 0.6.8+git20170215.476169c-10build1 source package in Ubuntu
Changelog
python-pyvcf (0.6.8+git20170215.476169c-10build1) noble; urgency=medium * No-change rebuild with Python 3.12 only -- Graham Inggs <email address hidden> Wed, 10 Apr 2024 17:40:13 +0000
Upload details
- Uploaded by:
- Graham Inggs
- Uploaded to:
- Noble
- Original maintainer:
- Debian Med
- Architectures:
- any all
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section | |
|---|---|---|---|---|
| Oracular | release | universe | misc | |
| Noble | release | universe | misc |
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| python-pyvcf_0.6.8+git20170215.476169c.orig.tar.xz | 913.8 KiB | df89a50c3b0faed0acffe86377ceca77053b2fc516de95e4a14623bbef42fb87 |
| python-pyvcf_0.6.8+git20170215.476169c-10build1.debian.tar.xz | 9.8 KiB | fb6a58d094a1fda6c1570c9dbe6016e018232bd2e7ad7a940ef5c1db7df96cef |
| python-pyvcf_0.6.8+git20170215.476169c-10build1.dsc | 2.3 KiB | bc08fbdc7b91b015e1cb94c889b5cba98e79c4f7c40597ff086bb98d797413d7 |
Available diffs
Binary packages built by this source
- python-pyvcf-examples: Example data for Variant Call Format (VCF) parser for Python
The Variant Call Format (VCF) specifies the format of a text file used
in bioinformatics for storing gene sequence variations. The format has
been developed with the advent of large-scale genotyping and DNA
sequencing projects, such as the 1000 Genomes Project.
.
The intent of this module is to mimic the ``csv`` module in the Python
stdlib, as opposed to more flexible serialization formats like JSON or
YAML. ``vcf`` will attempt to parse the content of each record based on
the data types specified in the meta-information lines -- specifically
the ##INFO and
##FORMAT lines. If these lines are missing or incomplete, it will check
against the reserved types mentioned in the spec. Failing that, it will
just return strings.
.
This package provides example data to test the Python modules.
- python3-vcf: Variant Call Format (VCF) parser for Python 3
The Variant Call Format (VCF) specifies the format of a text file used
in bioinformatics for storing gene sequence variations. The format has
been developed with the advent of large-scale genotyping and DNA
sequencing projects, such as the 1000 Genomes Project.
.
The intent of this module is to mimic the ``csv`` module in the Python
stdlib, as opposed to more flexible serialization formats like JSON or
YAML. ``vcf`` will attempt to parse the content of each record based on
the data types specified in the meta-information lines -- specifically
the ##INFO and
##FORMAT lines. If these lines are missing or incomplete, it will check
against the reserved types mentioned in the spec. Failing that, it will
just return strings.
.
This package provides the Python 3 modules.
- python3-vcf-dbgsym: debug symbols for python3-vcf
- pyvcf: helper scripts for Variant Call Format (VCF) parser
The Variant Call Format (VCF) specifies the format of a text file used
in bioinformatics for storing gene sequence variations. The format has
been developed with the advent of large-scale genotyping and DNA
sequencing projects, such as the 1000 Genomes Project.
.
The intent of this module is to mimic the ``csv`` module in the Python
stdlib, as opposed to more flexible serialization formats like JSON or
YAML. ``vcf`` will attempt to parse the content of each record based on
the data types specified in the meta-information lines -- specifically
the ##INFO and
##FORMAT lines. If these lines are missing or incomplete, it will check
against the reserved types mentioned in the spec. Failing that, it will
just return strings.
.
This package provides helper scripts using python3-pyvcf.
