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python-pyvcf package

python-pyvcf 0.6.8+git20170215.476169c-10 source package in Ubuntu

Changelog

python-pyvcf (0.6.8+git20170215.476169c-10) unstable; urgency=medium

  * Team upload.
  * Packaging update
  * Standards-Version: 4.6.2 (routine-update)
  * Build-Depends: s/dh-python/dh-sequence-python3/ (routine-update)
  * Set upstream metadata fields: Repository-Browse.
  * d/clean: Remove autogenerated file, vcf/cparse.c (Closes: #1046140)
  * d/control: Replace autopkgtest-pkg-python with autopkgtest-pkg-pybuild
  * d/rules: Copy tests to build directory
  * d/tests: Removed, run upstream tests with autopkgtest-pkg-pybuild
  * d/python-pyvcf-examples.lintian-overrides: Removed, override unused

 -- Lance Lin <email address hidden>  Mon, 04 Dec 2023 20:55:29 +0700

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any all
Section:
misc
Urgency:
Medium Urgency

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Binary packages built by this source

python-pyvcf-examples: Example data for Variant Call Format (VCF) parser for Python

 The Variant Call Format (VCF) specifies the format of a text file used
 in bioinformatics for storing gene sequence variations. The format has
 been developed with the advent of large-scale genotyping and DNA
 sequencing projects, such as the 1000 Genomes Project.
 .
 The intent of this module is to mimic the ``csv`` module in the Python
 stdlib, as opposed to more flexible serialization formats like JSON or
 YAML. ``vcf`` will attempt to parse the content of each record based on
 the data types specified in the meta-information lines -- specifically
 the ##INFO and
 ##FORMAT lines. If these lines are missing or incomplete, it will check
 against the reserved types mentioned in the spec. Failing that, it will
 just return strings.
 .
 This package provides example data to test the Python modules.

python3-vcf: Variant Call Format (VCF) parser for Python 3

 The Variant Call Format (VCF) specifies the format of a text file used
 in bioinformatics for storing gene sequence variations. The format has
 been developed with the advent of large-scale genotyping and DNA
 sequencing projects, such as the 1000 Genomes Project.
 .
 The intent of this module is to mimic the ``csv`` module in the Python
 stdlib, as opposed to more flexible serialization formats like JSON or
 YAML. ``vcf`` will attempt to parse the content of each record based on
 the data types specified in the meta-information lines -- specifically
 the ##INFO and
 ##FORMAT lines. If these lines are missing or incomplete, it will check
 against the reserved types mentioned in the spec. Failing that, it will
 just return strings.
 .
 This package provides the Python 3 modules.

python3-vcf-dbgsym: debug symbols for python3-vcf
pyvcf: helper scripts for Variant Call Format (VCF) parser

 The Variant Call Format (VCF) specifies the format of a text file used
 in bioinformatics for storing gene sequence variations. The format has
 been developed with the advent of large-scale genotyping and DNA
 sequencing projects, such as the 1000 Genomes Project.
 .
 The intent of this module is to mimic the ``csv`` module in the Python
 stdlib, as opposed to more flexible serialization formats like JSON or
 YAML. ``vcf`` will attempt to parse the content of each record based on
 the data types specified in the meta-information lines -- specifically
 the ##INFO and
 ##FORMAT lines. If these lines are missing or incomplete, it will check
 against the reserved types mentioned in the spec. Failing that, it will
 just return strings.
 .
 This package provides helper scripts using python3-pyvcf.