Ubuntu
python-pyfaidx package

python-pyfaidx 0.8.1.1-2 source package in Ubuntu

Changelog

python-pyfaidx (0.8.1.1-2) unstable; urgency=medium

  * Team upload.
  * d/control: build-dep on setuptools-scm to fix wrong "0.0.0" version

 -- Michael R. Crusoe <email address hidden>  Fri, 26 Apr 2024 14:29:27 +0200

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
all
Section:
misc
Urgency:
Medium Urgency

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Builds

Oracular: [FULLYBUILT] amd64

Downloads

File Size SHA-256 Checksum
python-pyfaidx_0.8.1.1-2.dsc 2.5 KiB 67951f5421832b0a73e9017ab0db5f3f8b72ff0d524629a308a55516360f8fda
python-pyfaidx_0.8.1.1.orig.tar.gz 94.3 KiB c20059a5ecf0b57d263501cefc192f8e1a8b08e8f730fafced0e3bc04e3c20ef
python-pyfaidx_0.8.1.1-2.debian.tar.xz 6.8 KiB 01d1547375cc5658118a9235645f1a9cf093ef2e6177325e485549f854198f10

Available diffs

No changes file available.

Binary packages built by this source

python-pyfaidx-examples: example data for efficient random access to fasta subsequences for Python

 Samtools provides a function "faidx" (FAsta InDeX), which creates a
 small flat index file ".fai" allowing for fast random access to any
 subsequence in the indexed FASTA file, while loading a minimal amount of
 the file in to memory. This Python module implements pure Python classes
 for indexing, retrieval, and in-place modification of FASTA files using
 a samtools compatible index. The pyfaidx module is API compatible with
 the pygr seqdb module. A command-line script "faidx" is installed
 alongside the pyfaidx module, and facilitates complex manipulation of
 FASTA files without any programming knowledge.
 .
 This package provides example data to test the Python modules.

python3-pyfaidx: efficient random access to fasta subsequences for Python 3

 Samtools provides a function "faidx" (FAsta InDeX), which creates a
 small flat index file ".fai" allowing for fast random access to any
 subsequence in the indexed FASTA file, while loading a minimal amount of
 the file in to memory. This Python module implements pure Python classes
 for indexing, retrieval, and in-place modification of FASTA files using
 a samtools compatible index. The pyfaidx module is API compatible with
 the pygr seqdb module. A command-line script "faidx" is installed
 alongside the pyfaidx module, and facilitates complex manipulation of
 FASTA files without any programming knowledge.
 .
 This package provides the Python 3 modules to access fasta files.